AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0435000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435000 MtrunA17_Chr3g0141821 93.322 569 37 1 11 578 4 572 0.0 1024
Msa0435000 MtrunA17_Chr1g0155521 69.732 598 145 6 14 575 18 615 0.0 822
Msa0435000 MtrunA17_Chr4g0035391 58.333 600 205 9 14 575 18 610 0.0 669
Msa0435000 MtrunA17_Chr3g0144911 68.750 400 118 2 14 406 18 417 0.0 577
Msa0435000 MtrunA17_Chr8g0372651 49.479 576 212 12 25 567 13 542 1.90e-167 495
Msa0435000 MtrunA17_Chr3g0144891 49.652 574 225 10 20 567 20 555 2.55e-160 477
Msa0435000 MtrunA17_Chr5g0404711 56.479 409 166 5 31 437 10 408 1.66e-157 466
Msa0435000 MtrunA17_Chr5g0404711 41.250 80 46 1 501 580 397 475 3.97e-11 66.2
Msa0435000 MtrunA17_Chr7g0236461 42.712 590 297 11 11 574 6 580 3.98e-146 442
Msa0435000 MtrunA17_Chr4g0035361 50.202 496 182 12 100 567 1 459 7.47e-144 431
Msa0435000 MtrunA17_Chr3g0080051 43.067 613 299 11 14 580 9 617 1.37e-142 433
Msa0435000 MtrunA17_Chr8g0369291 42.708 576 291 12 37 580 33 601 5.22e-128 395
Msa0435000 MtrunA17_Chr4g0035381 58.974 273 105 1 71 336 48 320 5.58e-116 356
Msa0435000 MtrunA17_Chr5g0399151 53.763 279 129 0 59 337 74 352 6.61e-107 335
Msa0435000 MtrunA17_Chr3g0144901 47.059 187 67 5 421 575 4 190 1.35e-33 127
Msa0435000 MtrunA17_Chr3g0131581 31.364 220 132 6 97 315 66 267 2.54e-21 94.7
Msa0435000 MtrunA17_Chr3g0102691 28.163 245 163 5 66 307 1 235 1.11e-18 88.6
Msa0435000 MtrunA17_Chr8g0385691 31.696 224 134 7 93 315 42 247 1.38e-18 86.3
Msa0435000 MtrunA17_Chr4g0076441 28.571 252 150 7 87 317 18 260 5.17e-18 86.3
Msa0435000 MtrunA17_Chr2g0290661 28.638 213 136 5 101 307 39 241 2.82e-16 80.9
Msa0435000 MtrunA17_Chr1g0161441 30.275 218 133 8 101 315 32 233 2.89e-16 79.3
Msa0435000 MtrunA17_Chr8g0385291 28.507 221 133 8 100 310 181 386 1.58e-12 70.9
Msa0435000 MtrunA17_Chr4g0004981 29.148 223 129 8 100 310 125 330 6.44e-12 68.6
Msa0435000 MtrunA17_Chr3g0131071 26.638 229 149 6 91 310 238 456 6.99e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0435000 AT2G21520.1 58.682 622 213 8 6 586 13 631 0.0 698
Msa0435000 AT2G21520.2 58.682 622 213 8 6 586 17 635 0.0 698
Msa0435000 AT2G21520.3 58.682 622 213 8 6 586 17 635 0.0 698
Msa0435000 AT4G39170.1 60.899 601 201 8 12 580 16 614 0.0 696
Msa0435000 AT4G39170.2 60.732 601 200 9 12 580 16 612 0.0 688
Msa0435000 AT1G75370.1 57.311 595 216 10 12 574 16 604 0.0 591
Msa0435000 AT1G75370.2 57.262 599 210 11 12 574 16 604 0.0 590
Msa0435000 AT1G19650.1 55.743 592 222 10 15 573 16 600 0.0 590
Msa0435000 AT1G19650.2 56.917 506 187 7 97 575 29 530 0.0 536
Msa0435000 AT2G21540.3 50.455 549 236 8 20 567 18 531 1.69e-177 521
Msa0435000 AT2G21540.5 50.455 549 236 8 20 567 18 531 1.69e-177 521
Msa0435000 AT2G21540.6 50.455 549 242 8 20 567 18 537 1.80e-177 521
Msa0435000 AT2G21540.2 50.455 549 242 8 20 567 18 537 1.80e-177 521
Msa0435000 AT2G21540.1 50.455 549 242 8 20 567 18 537 1.80e-177 521
Msa0435000 AT2G21540.4 50.455 549 242 8 20 567 18 537 1.80e-177 521
Msa0435000 AT4G36490.1 51.268 552 224 11 29 567 12 531 2.67e-177 520
Msa0435000 AT4G34580.2 51.332 563 227 12 21 567 11 542 3.40e-177 520
Msa0435000 AT4G34580.1 51.332 563 227 12 21 567 11 542 3.40e-177 520
Msa0435000 AT2G18180.2 50.000 568 204 13 30 567 17 534 2.19e-174 513
Msa0435000 AT2G18180.1 49.735 567 207 12 30 567 17 534 5.46e-174 512
Msa0435000 AT4G39180.3 48.611 576 216 13 20 567 18 541 1.48e-170 503
Msa0435000 AT4G39180.2 48.611 576 216 13 20 567 18 541 1.48e-170 503
Msa0435000 AT4G39180.1 48.785 576 216 14 20 567 18 542 1.65e-170 503
Msa0435000 AT1G19650.3 64.141 396 132 4 15 404 16 407 4.46e-166 488
Msa0435000 AT2G16380.2 46.564 582 234 13 20 573 9 541 7.94e-157 468
Msa0435000 AT2G16380.1 46.564 582 234 13 20 573 9 541 7.94e-157 468
Msa0435000 AT3G24840.7 46.549 565 243 9 20 562 23 550 1.16e-156 469
Msa0435000 AT3G24840.3 46.549 565 243 9 20 562 23 550 1.16e-156 469
Msa0435000 AT3G24840.5 46.549 565 243 9 20 562 23 550 1.16e-156 469
Msa0435000 AT3G24840.1 46.643 566 240 10 20 562 23 549 1.30e-156 468
Msa0435000 AT3G24840.6 46.643 566 240 10 20 562 23 549 1.30e-156 468
Msa0435000 AT3G24840.4 46.643 566 240 10 20 562 23 549 1.30e-156 468
Msa0435000 AT3G24840.2 46.643 566 240 10 20 562 23 549 1.30e-156 468
Msa0435000 AT2G18180.4 49.595 494 181 10 101 567 11 463 1.61e-153 456
Msa0435000 AT2G18180.3 49.595 494 181 10 101 567 11 463 2.52e-153 456
Msa0435000 AT2G18180.5 49.057 477 175 10 118 567 1 436 3.85e-145 434
Msa0435000 AT1G55690.3 42.571 599 280 10 13 562 22 605 5.41e-133 409
Msa0435000 AT1G55690.2 42.571 599 280 10 13 562 22 605 7.46e-133 409
Msa0435000 AT1G55690.4 42.571 599 280 10 13 562 22 605 7.46e-133 409
Msa0435000 AT1G55690.1 42.571 599 280 10 13 562 22 605 7.46e-133 409
Msa0435000 AT1G55690.5 42.571 599 280 10 13 562 22 605 7.46e-133 409
Msa0435000 AT2G16380.3 46.025 478 194 10 118 573 1 436 3.10e-126 385
Msa0435000 AT5G56160.1 40.378 582 293 12 23 576 19 574 7.23e-126 389
Msa0435000 AT5G56160.3 40.378 582 293 12 23 576 19 574 7.23e-126 389
Msa0435000 AT5G56160.2 54.518 332 142 3 23 350 19 345 6.94e-123 378
Msa0435000 AT5G47510.2 55.469 256 114 0 78 333 29 284 3.09e-104 324
Msa0435000 AT5G47510.1 55.469 256 114 0 78 333 28 283 7.17e-104 325
Msa0435000 AT5G47510.4 55.469 256 114 0 78 333 29 284 7.72e-104 325
Msa0435000 AT5G47510.3 55.752 226 100 0 108 333 2 227 1.18e-93 296
Msa0435000 AT5G47730.4 28.333 240 157 5 77 307 8 241 3.94e-19 90.1
Msa0435000 AT5G47730.1 28.333 240 157 5 77 307 8 241 3.94e-19 90.1
Msa0435000 AT1G55840.1 28.906 256 155 8 64 307 1 241 8.50e-18 85.9
Msa0435000 AT1G55840.2 30.180 222 139 6 93 307 2 214 1.55e-17 84.7
Msa0435000 AT1G01630.1 29.730 222 133 7 97 315 49 250 6.16e-16 79.0
Msa0435000 AT5G47730.2 27.604 192 131 3 118 307 1 186 3.45e-14 74.3
Msa0435000 AT5G47730.3 27.604 192 131 3 118 307 1 186 3.45e-14 74.3
Msa0435000 AT1G72160.1 23.585 318 210 11 14 314 78 379 1.02e-13 75.1
Msa0435000 AT4G09160.3 24.756 307 192 12 40 322 249 540 3.60e-11 67.4
Msa0435000 AT4G09160.2 24.756 307 192 12 40 322 249 540 3.95e-11 67.0
Msa0435000 AT4G09160.1 24.756 307 192 12 40 322 274 565 3.96e-11 67.0

Find 162 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATCACTTGCCTCTTCT+TGG 0.202570 3_2:+88008950 None:intergenic
ATGAATCTTTGAAGTAGTTT+TGG 0.227191 3_2:+88009732 None:intergenic
AGGTTCCAGCACAACAATTT+TGG 0.228844 3_2:-88010447 Msa0435000:CDS
TGAATGTTCCATTAGGTTCT+TGG 0.246980 3_2:-88009603 Msa0435000:intron
CCGTGACTTCAGCTCAGATC+TGG 0.268147 3_2:+88005814 Msa0434990:intron
GGAAAACCTTTAAAATGTTT+TGG 0.274087 3_2:+88009365 None:intergenic
AAAGTTGAGAGGTGAGAAAA+AGG 0.283841 3_2:+88007546 Msa0434990:three_prime_UTR
GTCTTGCCATGGCCCTTTAT+CGG 0.290544 3_2:+88009387 None:intergenic
AGTAAGAAGTACTGAGAATT+TGG 0.292222 3_2:+88005770 Msa0434990:intron
TTGTTCGAACAAAGGCAAAA+AGG 0.292384 3_2:+88008548 None:intergenic
GGGGTTTGGCTTTGTGAATC+TGG 0.297857 3_2:+88008480 None:intergenic
TAAATGCATCATGCAAATTA+AGG 0.298711 3_2:-88011309 Msa0435000:CDS
AGTTAATATCGATTTGTAAA+AGG 0.303709 3_2:+88007414 Msa0434990:three_prime_UTR
AACCATGTGGATAGTACTTC+TGG 0.304122 3_2:+88010648 None:intergenic
CCTTCACTTATACGATTTCA+TGG 0.315350 3_2:+88004438 Msa0434990:intron
TTCAAATAATCGGCAAGAAT+TGG 0.317585 3_2:+88007500 Msa0434990:three_prime_UTR
TTCCTTTGGTCAGCCTAGTT+TGG 0.320424 3_2:+88005840 Msa0434990:intron
CATAGAATTCCCACATGCTT+TGG 0.329438 3_2:+88008993 None:intergenic
AATGAGACAAGAAGAACTTT+TGG 0.329773 3_2:-88008129 Msa0435000:CDS
GGCTGTATGACATCCGATAA+AGG 0.337655 3_2:-88009400 Msa0435000:CDS
CAACTACCGCCTAGAAATTC+TGG 0.341995 3_2:+88009442 None:intergenic
CTTGGACATGAGTCAGTATA+GGG 0.349834 3_2:+88008968 None:intergenic
GATGATAAGTGGAAAAGAAT+TGG 0.351511 3_2:-88011352 Msa0435000:CDS
AGTTACTTGCATAAGCCTAT+TGG 0.352097 3_2:+88010565 None:intergenic
GTGTGACAAAGGGAGTAAAA+AGG 0.353499 3_2:-88008516 Msa0435000:CDS
CTCTGCAAGTCAAAATATCT+AGG 0.355038 3_2:+88004533 Msa0434990:intron
GTTACTTGCATAAGCCTATT+GGG 0.369599 3_2:+88010566 None:intergenic
GGATGCAGAAAATCTGCTTT+TGG 0.376361 3_2:-88008605 Msa0435000:intron
GTGTGAATATTTCAAATAAT+CGG 0.378658 3_2:+88007490 Msa0434990:three_prime_UTR
AGTGAGCTACCAGAATTTCT+AGG 0.380292 3_2:-88009451 Msa0435000:CDS
TACCATAGTCTTTCCTCCAT+TGG 0.380545 3_2:+88010827 None:intergenic
GGTGCTGCTTGCTTCTCCTT+TGG 0.389658 3_2:+88008759 None:intergenic
CCTAGCCTCTCAATATAAAC+AGG 0.390737 3_2:+88010599 None:intergenic
ATAGAATTCCCACATGCTTT+GGG 0.391941 3_2:+88008994 None:intergenic
TCTTGGACATGAGTCAGTAT+AGG 0.395958 3_2:+88008967 None:intergenic
TTTGTAAAAGGTACTGCTTA+AGG 0.396097 3_2:+88007426 Msa0434990:three_prime_UTR
AATCCTCCAGCACAGATATA+TGG 0.397244 3_2:-88004470 Msa0435000:CDS
AGCAGCTCCTCTTTCTCACT+TGG 0.399254 3_2:+88008379 None:intergenic
CGAAACTCATTTGGCTCAAA+AGG 0.401215 3_2:-88008735 Msa0435000:intron
GTAGAAGATGAGGAGGGGTT+TGG 0.414982 3_2:+88008466 None:intergenic
CTAGGCAAGATTTGTTGATA+AGG 0.428115 3_2:-88008853 Msa0435000:intron
GCAAGATTTGTTGATAAGGT+TGG 0.435405 3_2:-88008849 Msa0435000:CDS
GAAACACTACTGATTATAGT+AGG 0.436443 3_2:-88011403 Msa0435000:CDS
CTGTTCAAGATGCGGGCAAA+AGG 0.442884 3_2:+88007385 Msa0434990:three_prime_UTR
CTCCTCTTTCTCACTTGGCA+TGG 0.452012 3_2:+88008384 None:intergenic
AAGCTCACTGAGGCGTTTCA+AGG 0.453754 3_2:+88008444 None:intergenic
TACTATCCACATGGTTATCA+TGG 0.455469 3_2:-88010641 Msa0435000:CDS
AACATCCAAAATTGTTGTGC+TGG 0.460482 3_2:+88010442 None:intergenic
GCAGCACCACGAAACTCATT+TGG 0.462925 3_2:-88008744 Msa0435000:CDS
TTTATCATCAATGCTGGTCC+TGG 0.464243 3_2:-88009796 Msa0435000:CDS
AAAAGTGGCTGTACATCTAC+TGG 0.471399 3_2:-88009051 Msa0435000:CDS
ATCCAATGGAGGAAAGACTA+TGG 0.472951 3_2:-88010829 Msa0435000:CDS
TTTGAGCCAAATGAGTTTCG+TGG 0.473382 3_2:+88008738 None:intergenic
CGTGACTTCAGCTCAGATCT+GGG 0.473438 3_2:+88005815 Msa0434990:intron
GTTGATAAGGTTGGTCATAC+CGG 0.475173 3_2:-88008840 Msa0435000:CDS
GGTAACCAGGACTGTTACAG+TGG 0.476374 3_2:-88008584 Msa0435000:CDS
GACAATTATGACTACACAGC+TGG 0.478304 3_2:-88005725 Msa0435000:CDS
GTCGAACATCCTCAATGGAC+AGG 0.479812 3_2:+88011233 None:intergenic
ATGACTATCATATGTTATTG+AGG 0.481600 3_2:-88011135 Msa0435000:intron
TTGAGAAAGCAAAGCTTATG+TGG 0.482104 3_2:-88010861 Msa0435000:CDS
AACTGCGCTGTTCAAGATGC+GGG 0.482477 3_2:+88007378 Msa0434990:three_prime_UTR
GCTGTATGACATCCGATAAA+GGG 0.483951 3_2:-88009399 Msa0435000:CDS
GATGAGTTCTCGAGCAGACT+TGG 0.484272 3_2:+88010157 None:intergenic
CTGCTTAAGGTGACAGTGAT+TGG 0.486967 3_2:+88007439 Msa0434990:three_prime_UTR
TCGTAACAATTTCCAACGAC+GGG 0.488552 3_2:-88009206 Msa0435000:CDS
TACAGAAGCATGTCAGTGTA+AGG 0.489548 3_2:-88007258 Msa0435000:CDS
AGAGTTCAGAGGATGATAAG+TGG 0.489773 3_2:-88011363 Msa0435000:CDS
TCCGAGCCATATATCTGTGC+TGG 0.492938 3_2:+88004464 Msa0434990:intron
ATCAATAATCTTGTCAACCA+TGG 0.500918 3_2:+88008788 None:intergenic
TAGGAAAAGTTGATCCCAAT+AGG 0.504043 3_2:-88010580 Msa0435000:CDS
TGCCATGCCAAGTGAGAAAG+AGG 0.504746 3_2:-88008386 Msa0435000:CDS
TACTTCTTACTGCATTACAC+TGG 0.504919 3_2:-88005758 Msa0435000:CDS
GTTGACAAGATTATTGATGT+TGG 0.506685 3_2:-88008783 Msa0435000:CDS
TGGTCAGCCTAGTTTGGCTG+TGG 0.509107 3_2:+88005846 Msa0434990:intron
GAGGATTGTGTATACTGCTC+TGG 0.509117 3_2:+88004486 Msa0434990:intron
TTTCCTCCATTGGATCATGT+TGG 0.513399 3_2:+88010837 None:intergenic
ATATTTGAGATACCATGTGC+AGG 0.520320 3_2:-88010531 Msa0435000:CDS
TATAATCAGTAGTGTTTCAA+AGG 0.520512 3_2:+88011408 None:intergenic
TGATAGTCATCATGTATTGA+AGG 0.523730 3_2:+88011148 None:intergenic
AACTTGTCGAACATCCTCAA+TGG 0.528444 3_2:+88011228 None:intergenic
GGCAAGAATTGGTTGACTAG+AGG 0.535879 3_2:+88007511 Msa0434990:three_prime_UTR
CCTGTTTATATTGAGAGGCT+AGG 0.536718 3_2:-88010599 Msa0435000:CDS
GTTGTAGATTCTTGAAAGCA+AGG 0.537683 3_2:-88010894 Msa0435000:intron
CAAATGTTTATCATCAATGC+TGG 0.541743 3_2:-88009802 Msa0435000:CDS
GCAAGAATTGGTTGACTAGA+GGG 0.542845 3_2:+88007512 Msa0434990:three_prime_UTR
TATTTGAGATACCATGTGCA+GGG 0.548634 3_2:-88010530 Msa0435000:CDS
TGGTACAGATACAATTATAG+AGG 0.554834 3_2:-88010809 Msa0435000:intron
TGAGGATGTTCGACAAGTTG+AGG 0.556408 3_2:-88011224 Msa0435000:CDS
TTGACTTGCAGAGAATGGAA+TGG 0.559054 3_2:-88004523 Msa0435000:CDS
TGGTTATCATGGTGTGGACA+AGG 0.560676 3_2:-88010630 Msa0435000:CDS
TAACAATTTCCAACGACGGG+GGG 0.562654 3_2:-88009203 Msa0435000:CDS
ATAGCATTTCGTGTGACAAA+GGG 0.564103 3_2:-88008526 Msa0435000:CDS
AATAGCATTTCGTGTGACAA+AGG 0.565114 3_2:-88008527 Msa0435000:CDS
TCCAGCACAGATATATGGCT+CGG 0.565187 3_2:-88004465 Msa0435000:CDS
TCAATAATCTTGTCAACCAT+GGG 0.565693 3_2:+88008789 None:intergenic
TCTGCAAGTCAAAATATCTA+GGG 0.566047 3_2:+88004534 Msa0434990:intron
TTATGACTACACAGCTGGAA+AGG 0.568054 3_2:-88005720 Msa0435000:intron
GATTATTGATGTTGGACCAA+AGG 0.573610 3_2:-88008775 Msa0435000:CDS
ATTCCCACATGCTTTGGGAG+AGG 0.576118 3_2:+88008999 None:intergenic
TTTGGCATACATAGACAGTC+GGG 0.579008 3_2:-88008111 Msa0435000:CDS
AGAGCTCATTGCTACAAAGA+AGG 0.579053 3_2:-88008320 Msa0435000:intron
AGTCACGCCACAGCCAAACT+AGG 0.579179 3_2:-88005853 Msa0435000:CDS
GCAGCAAAAGTAGTGGCAGT+AGG 0.581849 3_2:-88011264 Msa0435000:CDS
GGAACATATTCATCATACTC+AGG 0.584478 3_2:+88008810 None:intergenic
GAAGACCTGTTTATATTGAG+AGG 0.585453 3_2:-88010604 Msa0435000:CDS
GCGTTTCAAGGTAGAAGATG+AGG 0.585982 3_2:+88008456 None:intergenic
GTATCTCAAATATCTTTCCA+TGG 0.587541 3_2:+88010541 None:intergenic
ATCACCTCTCCCAAAGCATG+TGG 0.587564 3_2:-88009003 Msa0435000:CDS
AACAATTTCCAACGACGGGG+GGG 0.590029 3_2:-88009202 Msa0435000:CDS
GATGCCCACTGTAACAGTCC+TGG 0.590148 3_2:+88008579 None:intergenic
AAATGCTATTGTTCGAACAA+AGG 0.593799 3_2:+88008540 None:intergenic
TGCATGCAGATGGTTCTTAG+TGG 0.596223 3_2:-88009252 Msa0435000:intron
TGTGGGCCAACATGATCCAA+TGG 0.599513 3_2:-88010843 Msa0435000:CDS
GAGCAATTCCCTGTCCATTG+AGG 0.600815 3_2:-88011242 Msa0435000:CDS
TACTTGAGATTATCGATGCG+AGG 0.602427 3_2:-88009560 Msa0435000:intron
ACTGACTCATGTCCAAGAAG+AGG 0.602573 3_2:-88008962 Msa0435000:intron
AAACTGCGCTGTTCAAGATG+CGG 0.602856 3_2:+88007377 Msa0434990:three_prime_UTR
GTTGACTAGAGGGACTCCTA+AGG 0.603746 3_2:+88007522 Msa0434990:three_prime_UTR
AGTTTATCGTGTGGATGCAT+TGG 0.603746 3_2:-88008347 Msa0435000:CDS
CCAGATCTGAGCTGAAGTCA+CGG 0.605295 3_2:-88005814 Msa0435000:CDS
TGTTATGAACATCTCGGTGG+CGG 0.607259 3_2:+88004565 Msa0434990:intron
ATCGTAACAATTTCCAACGA+CGG 0.608081 3_2:-88009207 Msa0435000:CDS
TCCTAAACAGGCTTTGTACG+AGG 0.609326 3_2:-88008156 Msa0435000:intron
GATAAGGTTGGTCATACCGG+TGG 0.614668 3_2:-88008837 Msa0435000:CDS
ACTTCTTACTGCATTACACT+GGG 0.615513 3_2:-88005757 Msa0435000:CDS
TGACATCCGATAAAGGGCCA+TGG 0.616150 3_2:-88009393 Msa0435000:CDS
TTCAAGGTAGAAGATGAGGA+GGG 0.616304 3_2:+88008460 None:intergenic
TCAAGGTAGAAGATGAGGAG+GGG 0.617122 3_2:+88008461 None:intergenic
AAAAGAAGCAGCAAAAGTAG+TGG 0.618855 3_2:-88011271 Msa0435000:CDS
TCCACATGGTTATCATGGTG+TGG 0.619712 3_2:-88010636 Msa0435000:CDS
TCGAACATCCTCAATGGACA+GGG 0.623693 3_2:+88011234 None:intergenic
TTAGCAGCTATAGAGCAAGC+TGG 0.628886 3_2:+88010479 None:intergenic
ATCATACTCAGGAAAACCAC+CGG 0.629075 3_2:+88008821 None:intergenic
TGAAAGAAGAGAGAGTTCAG+AGG 0.630165 3_2:-88011374 Msa0435000:CDS
ACTTGCAGAGAATGGAATGG+AGG 0.631384 3_2:-88004520 Msa0435000:CDS
TTTCAAGGTAGAAGATGAGG+AGG 0.637871 3_2:+88008459 None:intergenic
TGAGAAAGCAAAGCTTATGT+GGG 0.641603 3_2:-88010860 Msa0435000:CDS
AGCCAAACTAGGCTGACCAA+AGG 0.642703 3_2:-88005842 Msa0435000:CDS
GTAACAATTTCCAACGACGG+GGG 0.643422 3_2:-88009204 Msa0435000:CDS
ATAGCTGCTAAGAGACACAT+AGG 0.643444 3_2:-88010467 Msa0435000:CDS
TTCCATAGAAGCTTAAAACC+AGG 0.645111 3_2:+88009778 None:intergenic
GCTTATGCAAGTAACTACCA+TGG 0.650661 3_2:-88010558 Msa0435000:CDS
TTGGTGAAACTGACATGATG+AGG 0.651013 3_2:+88007458 Msa0434990:three_prime_UTR
TATCATGGTGTGGACAAGGA+GGG 0.652614 3_2:-88010626 Msa0435000:CDS
TGTTGCTGTTATGAACATCT+CGG 0.653304 3_2:+88004559 Msa0434990:intron
TAATCTCAAGTAATTTACTG+TGG 0.654334 3_2:+88009571 None:intergenic
GTATGATGAATATGTTCCCA+TGG 0.657630 3_2:-88008805 Msa0435000:CDS
GAGCCATATATCTGTGCTGG+AGG 0.658217 3_2:+88004467 Msa0434990:intron
CGTAACAATTTCCAACGACG+GGG 0.667892 3_2:-88009205 Msa0435000:CDS
GTAACCAGGACTGTTACAGT+GGG 0.670798 3_2:-88008583 Msa0435000:CDS
TGCACCTGTGTAGATCATGA+TGG 0.672539 3_2:-88009421 Msa0435000:CDS
GTCCAGAAGTACTATCCACA+TGG 0.674124 3_2:-88010650 Msa0435000:CDS
TCACCTCTCCCAAAGCATGT+GGG 0.674728 3_2:-88009002 Msa0435000:CDS
ACTCCTAAGGAAAAGTTGAG+AGG 0.675291 3_2:+88007535 Msa0434990:three_prime_UTR
TTATCATGGTGTGGACAAGG+AGG 0.685438 3_2:-88010627 Msa0435000:CDS
GAATGCTGCAGTTTATCGTG+TGG 0.686694 3_2:-88008356 Msa0435000:CDS
GGGCCAACATGATCCAATGG+AGG 0.693515 3_2:-88010840 Msa0435000:CDS
ACAGCCATCATGATCTACAC+AGG 0.695056 3_2:+88009417 None:intergenic
TGGTGAAACTGACATGATGA+GGG 0.697684 3_2:+88007459 Msa0434990:three_prime_UTR
TCCACACCATGATAACCATG+TGG 0.713264 3_2:+88010635 None:intergenic
TGCTGTTATGAACATCTCGG+TGG 0.747066 3_2:+88004562 Msa0434990:intron
GAGCTACCAGAATTTCTAGG+CGG 0.787653 3_2:-88009448 Msa0435000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTAATTTAAAATTAATA+TGG + chr3_2:88005715-88005734 Msa0434990:intron 0.0%
!!! ATATTAATTTTAAATTAATT+AGG - chr3_2:88005714-88005733 Msa0435000:intron 0.0%
!! AAATAATAATAATAAAAATT+AGG - chr3_2:88011235-88011254 Msa0435000:CDS 0.0%
!! AATAATAATAATAAAAATTA+GGG - chr3_2:88011236-88011255 Msa0435000:CDS 0.0%
!!! AATTTTTCAATTAATTTTCA+TGG + chr3_2:88004888-88004907 Msa0434990:intron 10.0%
!!! AATTAATTGAAAAATTGTTT+TGG - chr3_2:88004892-88004911 Msa0435000:intron 10.0%
!!! TATTTTTCTTTGTAAAAATA+TGG + chr3_2:88009315-88009334 None:intergenic 10.0%
!! AGAAAAATATATAAATAAAG+GGG + chr3_2:88009629-88009648 None:intergenic 10.0%
!!! TTATTCTTTTTCATGAATTT+AGG - chr3_2:88004455-88004474 Msa0435000:CDS 15.0%
!!! TATTTTGTTTTTATTTGTGT+GGG + chr3_2:88009123-88009142 None:intergenic 15.0%
!! TTACAAAGAAAAATATGTAT+TGG - chr3_2:88009320-88009339 Msa0435000:intron 15.0%
!! TCACAAAAATTGTTATAAAA+TGG - chr3_2:88009405-88009424 Msa0435000:CDS 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr3_2:88009565-88009584 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr3_2:88009566-88009585 None:intergenic 15.0%
!! ATAGATTTAAGAAATGATAA+TGG - chr3_2:88010562-88010581 Msa0435000:CDS 15.0%
!!! TATGCAATTAAGATTTTTAT+TGG - chr3_2:88010748-88010767 Msa0435000:intron 15.0%
!!! TTTTATAGATAAAGAAAACA+TGG - chr3_2:88010966-88010985 Msa0435000:intron 15.0%
!!! TTTTTATCAAATTCAGATTT+TGG + chr3_2:88011344-88011363 None:intergenic 15.0%
!!! ACTCTCTTTTTTTTCATATT+TGG - chr3_2:88005220-88005239 Msa0435000:intron 20.0%
!!! ATTTTTATAAGATTCCATTG+AGG - chr3_2:88006283-88006302 Msa0435000:intron 20.0%
!! TATTTCAGGAAAATACATAA+GGG + chr3_2:88006315-88006334 Msa0434990:intron 20.0%
!! TTATTTCAGGAAAATACATA+AGG + chr3_2:88006316-88006335 Msa0434990:intron 20.0%
!! TTTCAATTCATCATTATTTC+AGG + chr3_2:88006329-88006348 Msa0434990:intron 20.0%
!! TTCCACTTATTATTAATCAT+AGG - chr3_2:88006607-88006626 Msa0435000:intron 20.0%
!! ATCCTATGATTAATAATAAG+TGG + chr3_2:88006612-88006631 Msa0434990:intron 20.0%
!!! TACTATAATCCTTTGAATTT+TGG - chr3_2:88006863-88006882 Msa0435000:intron 20.0%
!!! TATTTAGGTTCCATTTATAT+TGG - chr3_2:88007270-88007289 Msa0435000:CDS 20.0%
!!! TTGTTAAGAACTTTAACTTT+AGG - chr3_2:88007713-88007732 Msa0435000:intron 20.0%
!! ATAAGATCATATCTTTAACA+TGG - chr3_2:88008367-88008386 Msa0435000:CDS 20.0%
!! GTGTGAATATTTCAAATAAT+CGG + chr3_2:88008466-88008485 None:intergenic 20.0%
!!! AGTTAATATCGATTTGTAAA+AGG + chr3_2:88008542-88008561 None:intergenic 20.0%
!!! GTCTAGTTTTTATATATTCT+GGG + chr3_2:88008807-88008826 None:intergenic 20.0%
!! TATATAAAAACTAGACGATT+TGG - chr3_2:88008811-88008830 Msa0435000:CDS 20.0%
!! TAAAGACAATAATTTATCGT+AGG + chr3_2:88008888-88008907 None:intergenic 20.0%
!!! TATGTATTTTGGTAATTTTC+TGG + chr3_2:88009097-88009116 None:intergenic 20.0%
!!! GTATTTTGTTTTTATTTGTG+TGG + chr3_2:88009124-88009143 None:intergenic 20.0%
!! CATTAATTTAGATTGTAATG+AGG - chr3_2:88009143-88009162 Msa0435000:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr3_2:88009496-88009515 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + chr3_2:88009606-88009625 None:intergenic 20.0%
!! AAAATCTTAATTGCATATTG+AGG + chr3_2:88010745-88010764 None:intergenic 20.0%
!!! ACTGCAATTTAATTTGTATT+AGG + chr3_2:88010901-88010920 None:intergenic 20.0%
!! TAAATCAGACTTACTTAAAT+TGG - chr3_2:88011040-88011059 Msa0435000:intron 20.0%
!! AAATCAGACTTACTTAAATT+GGG - chr3_2:88011041-88011060 Msa0435000:intron 20.0%
! TATAATCAGTAGTGTTTCAA+AGG + chr3_2:88004548-88004567 Msa0434990:intron 25.0%
! TAAATGCATCATGCAAATTA+AGG - chr3_2:88004644-88004663 Msa0435000:intron 25.0%
! ATGACTATCATATGTTATTG+AGG - chr3_2:88004818-88004837 Msa0435000:intron 25.0%
!!! TACTATGGTTTTTTCTCTAT+AGG - chr3_2:88005254-88005273 Msa0435000:intron 25.0%
!!! TCTATAGGATTTTGATTTCA+AGG - chr3_2:88005269-88005288 Msa0435000:intron 25.0%
! TTAGAGCTTCAATTAAATCA+TGG + chr3_2:88005608-88005627 Msa0434990:intron 25.0%
! TCAGTTACATATCTTAAATG+AGG + chr3_2:88006112-88006131 Msa0434990:intron 25.0%
!!! TGAATCTTTGAAGTAGTTTT+GGG + chr3_2:88006223-88006242 Msa0434990:intron 25.0%
!!! ATGAATCTTTGAAGTAGTTT+TGG + chr3_2:88006224-88006243 Msa0434990:intron 25.0%
! TTGAAATTGAATGTTCCATT+AGG - chr3_2:88006343-88006362 Msa0435000:intron 25.0%
! TAATCTCAAGTAATTTACTG+TGG + chr3_2:88006385-88006404 Msa0434990:intron 25.0%
!!! GGAAAACCTTTAAAATGTTT+TGG + chr3_2:88006591-88006610 Msa0434990:intron 25.0%
!! TGATAAAACATCTTTTCCAA+AGG - chr3_2:88006784-88006803 Msa0435000:intron 25.0%
! GTGATAGTACATTAATTACA+AGG - chr3_2:88007017-88007036 Msa0435000:intron 25.0%
! ATAGGTTTATACTACAGATT+AGG - chr3_2:88007246-88007265 Msa0435000:CDS 25.0%
! TACTACAGATTAGGATATTT+AGG - chr3_2:88007255-88007274 Msa0435000:CDS 25.0%
! TGTTTGACATCCAATATAAA+TGG + chr3_2:88007283-88007302 Msa0434990:intron 25.0%
! CAGTCATTAAAGAATCTTTA+TGG - chr3_2:88007322-88007341 Msa0435000:CDS 25.0%
! ATTAAAGAATCTTTATGGCA+TGG - chr3_2:88007327-88007346 Msa0435000:CDS 25.0%
! TCAAATGAAGAAGTTTGTAT+TGG + chr3_2:88008146-88008165 Msa0434990:three_prime_UTR 25.0%
! TTCTTCATTTGAATGTGTTT+GGG - chr3_2:88008154-88008173 Msa0435000:intron 25.0%
! GTTCCATTATGTTATTAACT+CGG + chr3_2:88008323-88008342 None:intergenic 25.0%
!!! CGTCTAGTTTTTATATATTC+TGG + chr3_2:88008808-88008827 None:intergenic 25.0%
! ATCAAATATAGAGGTTGTAA+TGG + chr3_2:88009042-88009061 None:intergenic 25.0%
! GATCTGATTATCAAATATAG+AGG + chr3_2:88009051-88009070 None:intergenic 25.0%
! TAATTTAGATTGTAATGAGG+TGG - chr3_2:88009146-88009165 Msa0435000:intron 25.0%
! AATTTAGATTGTAATGAGGT+GGG - chr3_2:88009147-88009166 Msa0435000:intron 25.0%
! TAAAAATATGGTTGTCCATT+AGG + chr3_2:88009303-88009322 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr3_2:88009497-88009516 None:intergenic 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr3_2:88009518-88009537 None:intergenic 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr3_2:88009519-88009538 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + chr3_2:88009607-88009626 None:intergenic 25.0%
! TATATAAATAAAGGGGAAAG+TGG + chr3_2:88009622-88009641 None:intergenic 25.0%
! TTAATTATCCTGATCAAAAC+AGG - chr3_2:88009854-88009873 Msa0435000:intron 25.0%
! TAATTATCCTGATCAAAACA+GGG - chr3_2:88009855-88009874 Msa0435000:intron 25.0%
! TCATGAATTCTAGTACAAAA+TGG + chr3_2:88009979-88009998 None:intergenic 25.0%
! CAACTAAATTAACTGACAAT+AGG + chr3_2:88010278-88010297 None:intergenic 25.0%
!!! AAAAGCACTTGAATTCTAAA+TGG - chr3_2:88010399-88010418 Msa0435000:intron 25.0%
! CACATACTTTGATTACAATA+TGG + chr3_2:88010449-88010468 None:intergenic 25.0%
! GAAACACTACTGATTATAGT+AGG - chr3_2:88004550-88004569 Msa0435000:CDS 30.0%
GATGATAAGTGGAAAAGAAT+TGG - chr3_2:88004601-88004620 Msa0435000:intron 30.0%
TGATAGTCATCATGTATTGA+AGG + chr3_2:88004808-88004827 Msa0434990:intron 30.0%
ACATAGCAAGTAAAGCATAA+TGG + chr3_2:88004851-88004870 Msa0434990:intron 30.0%
GCTTATGAAAACTTATCTAC+TGG + chr3_2:88004952-88004971 Msa0434990:intron 30.0%
ATGAATATGCAAAGAGATCT+AGG + chr3_2:88004988-88005007 Msa0434990:intron 30.0%
!! GTATGATATTGCATTTTGAC+TGG - chr3_2:88005009-88005028 Msa0435000:intron 30.0%
TGGTACAGATACAATTATAG+AGG - chr3_2:88005144-88005163 Msa0435000:intron 30.0%
! TTGGTGTTCATACTATACTA+TGG - chr3_2:88005239-88005258 Msa0435000:intron 30.0%
GTATCTCAAATATCTTTCCA+TGG + chr3_2:88005415-88005434 Msa0434990:intron 30.0%
! ACAACAATTTTGGATGTTCA+AGG - chr3_2:88005516-88005535 Msa0435000:intron 30.0%
TTGAAACCCTATAAAGCAAA+GGG + chr3_2:88005768-88005787 Msa0434990:intron 30.0%
! TTTGAAACCCTATAAAGCAA+AGG + chr3_2:88005769-88005788 Msa0434990:intron 30.0%
TCTCTTATTCTACATACTTC+AGG + chr3_2:88005855-88005874 Msa0434990:intron 30.0%
! TTAGACATAGTTCCTTGTTT+AGG + chr3_2:88006043-88006062 Msa0434990:intron 30.0%
CAAATGTTTATCATCAATGC+TGG - chr3_2:88006151-88006170 Msa0435000:intron 30.0%
!! TCAACATTTGGTTCTGTTAT+TGG - chr3_2:88006420-88006439 Msa0435000:intron 30.0%
! GCAAGACCAAAACATTTTAA+AGG - chr3_2:88006582-88006601 Msa0435000:intron 30.0%
ATTCATACTACATCTTAACC+TGG - chr3_2:88006630-88006649 Msa0435000:intron 30.0%
GAAATGAAAAACTGTACCTT+TGG + chr3_2:88006803-88006822 Msa0434990:intron 30.0%
ACTCAGTAACCAAAATTCAA+AGG + chr3_2:88006875-88006894 Msa0434990:intron 30.0%
!!! AACTGTTTTTATACTCGTCT+AGG - chr3_2:88007082-88007101 Msa0435000:intron 30.0%
TCAATAATCTTGTCAACCAT+GGG + chr3_2:88007167-88007186 Msa0434990:intron 30.0%
ATCAATAATCTTGTCAACCA+TGG + chr3_2:88007168-88007187 Msa0434990:intron 30.0%
GTTGACAAGATTATTGATGT+TGG - chr3_2:88007170-88007189 Msa0435000:intron 30.0%
AAATGCTATTGTTCGAACAA+AGG + chr3_2:88007416-88007435 Msa0434990:three_prime_UTR 30.0%
TAAAGTTCTTAACAATGACG+TGG + chr3_2:88007708-88007727 Msa0434990:three_prime_UTR 30.0%
! AATGAGACAAGAAGAACTTT+TGG - chr3_2:88007824-88007843 Msa0435000:intron 30.0%
TCAAGGTAAGTCAAAAGTTA+AGG - chr3_2:88007877-88007896 Msa0435000:intron 30.0%
ATAAAAATTCCCATGACAGA+TGG + chr3_2:88007946-88007965 Msa0434990:three_prime_UTR 30.0%
CTTCTTCATTTGAATGTGTT+TGG - chr3_2:88008153-88008172 Msa0435000:intron 30.0%
!! ACATTATTTTGCTTGACAGA+TGG - chr3_2:88008272-88008291 Msa0435000:intron 30.0%
! AGATGGATAATGGTACAAAA+TGG - chr3_2:88008289-88008308 Msa0435000:intron 30.0%
TTCAAATAATCGGCAAGAAT+TGG + chr3_2:88008456-88008475 None:intergenic 30.0%
!! TTTGTAAAAGGTACTGCTTA+AGG + chr3_2:88008530-88008549 None:intergenic 30.0%
!!! TTATTTTGACTCTCAGCTTT+TGG + chr3_2:88008660-88008679 None:intergenic 30.0%
!!! AGGAATTCTTTATTTTCTGC+TGG + chr3_2:88008868-88008887 None:intergenic 30.0%
! TTTTCAGCCAAACATCTATT+TGG + chr3_2:88008943-88008962 None:intergenic 30.0%
AATGTAGCAAAAGAGATAGT+AGG - chr3_2:88008966-88008985 Msa0435000:CDS 30.0%
TGTAATGGTGAATAGATGTT+GGG + chr3_2:88009027-88009046 None:intergenic 30.0%
TTGTAATGGTGAATAGATGT+TGG + chr3_2:88009028-88009047 None:intergenic 30.0%
!! GGTAATTTTCTGGTGAATAT+GGG + chr3_2:88009087-88009106 None:intergenic 30.0%
!! TGGTAATTTTCTGGTGAATA+TGG + chr3_2:88009088-88009107 None:intergenic 30.0%
!!! TTTGTTTTTATTTGTGTGGG+TGG + chr3_2:88009120-88009139 None:intergenic 30.0%
!! AGAGCACACAAATAGTTTTA+TGG + chr3_2:88009215-88009234 None:intergenic 30.0%
CTATTTGTTTGACAACCTAA+TGG - chr3_2:88009285-88009304 Msa0435000:intron 30.0%
ATTTGTGTGAAAAACCAAAC+TGG - chr3_2:88009651-88009670 Msa0435000:intron 30.0%
ATATAAGCTAACCTCAAATG+AGG - chr3_2:88009752-88009771 Msa0435000:CDS 30.0%
AGCTATTTATTCCTCATTTG+AGG + chr3_2:88009766-88009785 None:intergenic 30.0%
GAATAAATAGCTACCCATAA+AGG - chr3_2:88009774-88009793 Msa0435000:CDS 30.0%
!! AGTAAGAAGTACTGAGAATT+TGG + chr3_2:88010186-88010205 None:intergenic 30.0%
! TCAATTTTCACGTCTAAGAA+AGG + chr3_2:88010348-88010367 None:intergenic 30.0%
CTTAAATCTATATAGCTGTG+TGG + chr3_2:88010553-88010572 None:intergenic 30.0%
CAACAACTGTCATATGTTTA+GGG - chr3_2:88010634-88010653 Msa0435000:CDS 30.0%
CATATTGAGGTCTAATTAGA+TGG + chr3_2:88010732-88010751 None:intergenic 30.0%
GAAATGATCAAAATGGATCA+AGG + chr3_2:88010792-88010811 None:intergenic 30.0%
CTACAGTGAAATGATCAAAA+TGG + chr3_2:88010799-88010818 None:intergenic 30.0%
TATGAAGCGAATGAGTAAAA+TGG + chr3_2:88010859-88010878 None:intergenic 30.0%
!! TTAGGTGTATTTTATCGACT+TGG + chr3_2:88010883-88010902 None:intergenic 30.0%
! ACAAAATGTAATGAGCATTG+CGG - chr3_2:88010932-88010951 Msa0435000:intron 30.0%
GAAAACATGGTCATTAAGAA+AGG - chr3_2:88010979-88010998 Msa0435000:intron 30.0%
TGAAACACATGAAAGGAAAA+GGG - chr3_2:88011113-88011132 Msa0435000:intron 30.0%
ATAAAAATTAGGGTTGTGCA+TGG - chr3_2:88011246-88011265 Msa0435000:CDS 30.0%
!! CCAATTAGAAATCCACTTTT+GGG + chr3_2:88011303-88011322 None:intergenic 30.0%
! ACCAATTAGAAATCCACTTT+TGG + chr3_2:88011304-88011323 None:intergenic 30.0%
!! ATTCAGATTTTGGCAAAATC+TGG + chr3_2:88011334-88011353 None:intergenic 30.0%
TCTGCAAGTCAAAATATCTA+GGG + chr3_2:88011422-88011441 None:intergenic 30.0%
!!! ATATTTTGACTTGCAGAGAA+TGG - chr3_2:88011425-88011444 Msa0435000:exon 30.0%
AAAAGAAGCAGCAAAAGTAG+TGG - chr3_2:88004682-88004701 Msa0435000:intron 35.0%
!!! TGATATTGCATTTTGACTGG+TGG - chr3_2:88005012-88005031 Msa0435000:intron 35.0%
GTTGTAGATTCTTGAAAGCA+AGG - chr3_2:88005059-88005078 Msa0435000:intron 35.0%
TTGAGAAAGCAAAGCTTATG+TGG - chr3_2:88005092-88005111 Msa0435000:intron 35.0%
TGAGAAAGCAAAGCTTATGT+GGG - chr3_2:88005093-88005112 Msa0435000:intron 35.0%
TACTATCCACATGGTTATCA+TGG - chr3_2:88005312-88005331 Msa0435000:intron 35.0%
GAAGACCTGTTTATATTGAG+AGG - chr3_2:88005349-88005368 Msa0435000:intron 35.0%
! TAGGAAAAGTTGATCCCAAT+AGG - chr3_2:88005373-88005392 Msa0435000:intron 35.0%
GTTACTTGCATAAGCCTATT+GGG + chr3_2:88005390-88005409 Msa0434990:intron 35.0%
AGTTACTTGCATAAGCCTAT+TGG + chr3_2:88005391-88005410 Msa0434990:intron 35.0%
! ATATTTGAGATACCATGTGC+AGG - chr3_2:88005422-88005441 Msa0435000:intron 35.0%
! TATTTGAGATACCATGTGCA+GGG - chr3_2:88005423-88005442 Msa0435000:intron 35.0%
AACATCCAAAATTGTTGTGC+TGG + chr3_2:88005514-88005533 Msa0434990:intron 35.0%
GTTTAGATTGACAGTGAGTA+TGG - chr3_2:88005566-88005585 Msa0435000:intron 35.0%
TGGACTAATGGTGAATTTAG+CGG + chr3_2:88005648-88005667 Msa0434990:intron 35.0%
TCTTCTTCCCTTTGCTTTAT+AGG - chr3_2:88005758-88005777 Msa0435000:CDS 35.0%
CTTCTTCCCTTTGCTTTATA+GGG - chr3_2:88005759-88005778 Msa0435000:CDS 35.0%
TTCCATAGAAGCTTAAAACC+AGG + chr3_2:88006178-88006197 Msa0434990:intron 35.0%
TGAATGTTCCATTAGGTTCT+TGG - chr3_2:88006350-88006369 Msa0435000:intron 35.0%
ACTTGTTTCCAAGAACCTAA+TGG + chr3_2:88006361-88006380 Msa0434990:intron 35.0%
!!! AAAATGTTTTGGTCTTGCCA+TGG + chr3_2:88006580-88006599 Msa0434990:intron 35.0%
!! CTACATCTTAACCTGGTTTT+TGG - chr3_2:88006637-88006656 Msa0435000:intron 35.0%
ATCGTAACAATTTCCAACGA+CGG - chr3_2:88006746-88006765 Msa0435000:intron 35.0%
!!! GAATTTTGGTTACTGAGTAC+AGG - chr3_2:88006877-88006896 Msa0435000:intron 35.0%
ATAGAATTCCCACATGCTTT+GGG + chr3_2:88006962-88006981 Msa0434990:intron 35.0%
!! CTAGGCAAGATTTGTTGATA+AGG - chr3_2:88007100-88007119 Msa0435000:intron 35.0%
!! GCAAGATTTGTTGATAAGGT+TGG - chr3_2:88007104-88007123 Msa0435000:intron 35.0%
GGAACATATTCATCATACTC+AGG + chr3_2:88007146-88007165 Msa0434990:intron 35.0%
GTATGATGAATATGTTCCCA+TGG - chr3_2:88007148-88007167 Msa0435000:intron 35.0%
GATTATTGATGTTGGACCAA+AGG - chr3_2:88007178-88007197 Msa0435000:intron 35.0%
!! AAAATCTGCTTTTGGTAACC+AGG - chr3_2:88007356-88007375 Msa0435000:CDS 35.0%
TGTTCGAACAAAGGCAAAAA+GGG + chr3_2:88007407-88007426 Msa0434990:three_prime_UTR 35.0%
TTGTTCGAACAAAGGCAAAA+AGG + chr3_2:88007408-88007427 Msa0434990:three_prime_UTR 35.0%
AATAGCATTTCGTGTGACAA+AGG - chr3_2:88007426-88007445 Msa0435000:CDS 35.0%
ATAGCATTTCGTGTGACAAA+GGG - chr3_2:88007427-88007446 Msa0435000:CDS 35.0%
TGTGACAAAGGGAGTAAAAA+GGG - chr3_2:88007438-88007457 Msa0435000:CDS 35.0%
!!! CATTTTTTTCAAGCTCACTG+AGG + chr3_2:88007522-88007541 Msa0434990:three_prime_UTR 35.0%
GCATGTTCAATTTCCTAAAC+AGG - chr3_2:88007785-88007804 Msa0435000:intron 35.0%
! TTTTGGCATACATAGACAGT+CGG - chr3_2:88007841-88007860 Msa0435000:intron 35.0%
TCGGGAAAAAAGCAAATTCA+AGG - chr3_2:88007860-88007879 Msa0435000:intron 35.0%
TTAGTACTTACCATCTGTCA+TGG - chr3_2:88007933-88007952 Msa0435000:intron 35.0%
TAGTACTTACCATCTGTCAT+GGG - chr3_2:88007934-88007953 Msa0435000:intron 35.0%
TAAAGAGACAGTGTACATGA+CGG - chr3_2:88008004-88008023 Msa0435000:intron 35.0%
!!! ACATCCATGCTGTTTTAACT+TGG - chr3_2:88008191-88008210 Msa0435000:intron 35.0%
ATTGCCAAGTTAAAACAGCA+TGG + chr3_2:88008198-88008217 None:intergenic 35.0%
!!! ATGCTGTTTTAACTTGGCAA+TGG - chr3_2:88008197-88008216 Msa0435000:intron 35.0%
TTTGCTTGACAGATGGATAA+TGG - chr3_2:88008279-88008298 Msa0435000:intron 35.0%
TAATGGTACAAAATGGCACA+AGG - chr3_2:88008296-88008315 Msa0435000:intron 35.0%
GGACCGAGTTAATAACATAA+TGG - chr3_2:88008317-88008336 Msa0435000:intron 35.0%
GGAACAAACATAATCAGCAA+TGG - chr3_2:88008338-88008357 Msa0435000:CDS 35.0%
AAAGTTGAGAGGTGAGAAAA+AGG + chr3_2:88008410-88008429 None:intergenic 35.0%
CATAGAAGACTGCTATAAAG+TGG - chr3_2:88008759-88008778 Msa0435000:CDS 35.0%
! TATTTGGAACATGGTGAACA+GGG + chr3_2:88008927-88008946 None:intergenic 35.0%
! CCAAACATCTATTTGGAACA+TGG + chr3_2:88008936-88008955 None:intergenic 35.0%
CCATGTTCCAAATAGATGTT+TGG - chr3_2:88008933-88008952 Msa0435000:intron 35.0%
TACTCCTTTCCAGAATTAGT+TGG + chr3_2:88009192-88009211 None:intergenic 35.0%
AGAAAATGGGTCAGATATTC+CGG + chr3_2:88009483-88009502 None:intergenic 35.0%
TTTCCAGAGCAATCCTTTAT+GGG + chr3_2:88009790-88009809 None:intergenic 35.0%
ATTTCCAGAGCAATCCTTTA+TGG + chr3_2:88009791-88009810 None:intergenic 35.0%
TCTGTACAGATTGCAAAAGA+AGG - chr3_2:88009817-88009836 Msa0435000:intron 35.0%
!!! TTTCATACCCTGTTTTGATC+AGG + chr3_2:88009865-88009884 None:intergenic 35.0%
! TAGTACAAAATGGACTTGTG+GGG + chr3_2:88009969-88009988 None:intergenic 35.0%
! CTAGTACAAAATGGACTTGT+GGG + chr3_2:88009970-88009989 None:intergenic 35.0%
! TCTAGTACAAAATGGACTTG+TGG + chr3_2:88009971-88009990 None:intergenic 35.0%
AAAAATCCTAGTGTATCCCT+TGG - chr3_2:88010007-88010026 Msa0435000:intron 35.0%
AAAATCCTAGTGTATCCCTT+GGG - chr3_2:88010008-88010027 Msa0435000:intron 35.0%
CAGATTGAGAGTTCATTGTA+CGG - chr3_2:88010062-88010081 Msa0435000:intron 35.0%
TACTTCTTACTGCATTACAC+TGG - chr3_2:88010195-88010214 Msa0435000:intron 35.0%
ACTTCTTACTGCATTACACT+GGG - chr3_2:88010196-88010215 Msa0435000:intron 35.0%
ATTACAATATGGTCATGTGC+AGG + chr3_2:88010438-88010457 None:intergenic 35.0%
GCAACAACTGTCATATGTTT+AGG - chr3_2:88010633-88010652 Msa0435000:CDS 35.0%
TTTAGGGAGGAAACAGTAAA+AGG - chr3_2:88010650-88010669 Msa0435000:CDS 35.0%
ACTTTCATATTCAGAGCTAC+AGG - chr3_2:88011011-88011030 Msa0435000:intron 35.0%
! CTTTTCCTTTCATGTGTTTC+AGG + chr3_2:88011114-88011133 None:intergenic 35.0%
CTGAAACACATGAAAGGAAA+AGG - chr3_2:88011112-88011131 Msa0435000:intron 35.0%
! TTTGGAAATGCTATGGCTTT+TGG - chr3_2:88011168-88011187 Msa0435000:CDS 35.0%
!! TTGGGACAGAAATTTGGTTT+TGG + chr3_2:88011285-88011304 None:intergenic 35.0%
! CCCAAAAGTGGATTTCTAAT+TGG - chr3_2:88011300-88011319 Msa0435000:CDS 35.0%
! TGTTGCTGTTATGAACATCT+CGG + chr3_2:88011397-88011416 None:intergenic 35.0%
CTCTGCAAGTCAAAATATCT+AGG + chr3_2:88011423-88011442 None:intergenic 35.0%
TGAAAGAAGAGAGAGTTCAG+AGG - chr3_2:88004579-88004598 Msa0435000:intron 40.0%
AGAGTTCAGAGGATGATAAG+TGG - chr3_2:88004590-88004609 Msa0435000:intron 40.0%
AACTTGTCGAACATCCTCAA+TGG + chr3_2:88004728-88004747 Msa0434990:intron 40.0%
TTTCCTCCATTGGATCATGT+TGG + chr3_2:88005119-88005138 Msa0434990:CDS 40.0%
ATCCAATGGAGGAAAGACTA+TGG - chr3_2:88005124-88005143 Msa0435000:intron 40.0%
TACCATAGTCTTTCCTCCAT+TGG + chr3_2:88005129-88005148 Msa0434990:CDS 40.0%
AACCATGTGGATAGTACTTC+TGG + chr3_2:88005308-88005327 Msa0434990:intron 40.0%
CCTAGCCTCTCAATATAAAC+AGG + chr3_2:88005357-88005376 Msa0434990:intron 40.0%
CCTGTTTATATTGAGAGGCT+AGG - chr3_2:88005354-88005373 Msa0435000:intron 40.0%
GCTTATGCAAGTAACTACCA+TGG - chr3_2:88005395-88005414 Msa0435000:intron 40.0%
! TTTTCTCAAAACCCTGCACA+TGG + chr3_2:88005437-88005456 Msa0434990:intron 40.0%
ATAGCTGCTAAGAGACACAT+AGG - chr3_2:88005486-88005505 Msa0435000:intron 40.0%
! AGGTTCCAGCACAACAATTT+TGG - chr3_2:88005506-88005525 Msa0435000:intron 40.0%
! AATTTTGGATGTTCAAGGCG+TGG - chr3_2:88005521-88005540 Msa0435000:intron 40.0%
CAGTGAGTATGGCTTAATCA+TGG - chr3_2:88005577-88005596 Msa0435000:intron 40.0%
TGAGTATGGCTTAATCATGG+CGG - chr3_2:88005580-88005599 Msa0435000:intron 40.0%
AGTGCATGACTTTGGACTAA+TGG + chr3_2:88005660-88005679 Msa0434990:intron 40.0%
GTCCAAAGTCATGCACTAAA+TGG - chr3_2:88005663-88005682 Msa0435000:intron 40.0%
AGCCATTTAGTGCATGACTT+TGG + chr3_2:88005668-88005687 Msa0434990:intron 40.0%
TTGAGAAGCTCACCTAAACA+AGG - chr3_2:88006028-88006047 Msa0435000:intron 40.0%
TTTATCATCAATGCTGGTCC+TGG - chr3_2:88006157-88006176 Msa0435000:intron 40.0%
!!! GTCCTGGTTTTAAGCTTCTA+TGG - chr3_2:88006173-88006192 Msa0435000:intron 40.0%
CATAAGGGTTCTTACCTCAA+TGG + chr3_2:88006300-88006319 Msa0434990:intron 40.0%
TACTTGAGATTATCGATGCG+AGG - chr3_2:88006393-88006412 Msa0435000:intron 40.0%
ATGCGAGGTAACTCAACATT+TGG - chr3_2:88006408-88006427 Msa0435000:intron 40.0%
AGTGAGCTACCAGAATTTCT+AGG - chr3_2:88006502-88006521 Msa0435000:intron 40.0%
GCTGTATGACATCCGATAAA+GGG - chr3_2:88006554-88006573 Msa0435000:intron 40.0%
GCAAAGTAGAACCAAAAACC+AGG + chr3_2:88006651-88006670 Msa0434990:intron 40.0%
AATAGTTGTCTGCATGCAGA+TGG - chr3_2:88006691-88006710 Msa0435000:intron 40.0%
TCGTAACAATTTCCAACGAC+GGG - chr3_2:88006747-88006766 Msa0435000:intron 40.0%
TACTGAGTACAGGCAAAAAG+TGG - chr3_2:88006887-88006906 Msa0435000:intron 40.0%
AAAAGTGGCTGTACATCTAC+TGG - chr3_2:88006902-88006921 Msa0435000:intron 40.0%
CATAGAATTCCCACATGCTT+TGG + chr3_2:88006963-88006982 Msa0434990:intron 40.0%
CTTGGACATGAGTCAGTATA+GGG + chr3_2:88006988-88007007 Msa0434990:intron 40.0%
TCTTGGACATGAGTCAGTAT+AGG + chr3_2:88006989-88007008 Msa0434990:intron 40.0%
TACTATCACTTGCCTCTTCT+TGG + chr3_2:88007006-88007025 Msa0434990:intron 40.0%
! GTTGATAAGGTTGGTCATAC+CGG - chr3_2:88007113-88007132 Msa0435000:intron 40.0%
ATCATACTCAGGAAAACCAC+CGG + chr3_2:88007135-88007154 Msa0434990:intron 40.0%
TTTGAGCCAAATGAGTTTCG+TGG + chr3_2:88007218-88007237 Msa0434990:intron 40.0%
! CGAAACTCATTTGGCTCAAA+AGG - chr3_2:88007218-88007237 Msa0435000:intron 40.0%
TTGGCTCAAAAGGTGAGAAT+AGG - chr3_2:88007228-88007247 Msa0435000:intron 40.0%
! GGATGCAGAAAATCTGCTTT+TGG - chr3_2:88007348-88007367 Msa0435000:CDS 40.0%
GTGTGACAAAGGGAGTAAAA+AGG - chr3_2:88007437-88007456 Msa0435000:CDS 40.0%
TTCAAGGTAGAAGATGAGGA+GGG + chr3_2:88007496-88007515 Msa0434990:three_prime_UTR 40.0%
TTTCAAGGTAGAAGATGAGG+AGG + chr3_2:88007497-88007516 Msa0434990:three_prime_UTR 40.0%
AGTTTATCGTGTGGATGCAT+TGG - chr3_2:88007606-88007625 Msa0435000:intron 40.0%
AGAGCTCATTGCTACAAAGA+AGG - chr3_2:88007633-88007652 Msa0435000:intron 40.0%
TTTGGCATACATAGACAGTC+GGG - chr3_2:88007842-88007861 Msa0435000:intron 40.0%
! TCACCTCTCAACTTTTCCTT+AGG - chr3_2:88008415-88008434 Msa0435000:CDS 40.0%
ACTCCTAAGGAAAAGTTGAG+AGG + chr3_2:88008421-88008440 None:intergenic 40.0%
TGGTGAAACTGACATGATGA+GGG + chr3_2:88008497-88008516 None:intergenic 40.0%
TTGGTGAAACTGACATGATG+AGG + chr3_2:88008498-88008517 None:intergenic 40.0%
! TACAGAAGCATGTCAGTGTA+AGG - chr3_2:88008695-88008714 Msa0435000:intron 40.0%
! CTATTTGGAACATGGTGAAC+AGG + chr3_2:88008928-88008947 None:intergenic 40.0%
! TGTGTGGGTGGTATGTATTT+TGG + chr3_2:88009108-88009127 None:intergenic 40.0%
ACGAAAACCAAAGCAATGGA+GGG - chr3_2:88009344-88009363 Msa0435000:intron 40.0%
GAAAATGGGTCAGATATTCC+GGG + chr3_2:88009482-88009501 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG - chr3_2:88009665-88009684 Msa0435000:intron 40.0%
! CAAACTGGCTCAGATAAAAC+GGG - chr3_2:88009666-88009685 Msa0435000:intron 40.0%
CCATGTTTGCACAATTATGC+TGG + chr3_2:88009927-88009946 None:intergenic 40.0%
CCAGCATAATTGTGCAAACA+TGG - chr3_2:88009924-88009943 Msa0435000:intron 40.0%
AAATCCTAGTGTATCCCTTG+GGG - chr3_2:88010009-88010028 Msa0435000:intron 40.0%
TGAACTCTCAATCTGTTACG+AGG + chr3_2:88010057-88010076 None:intergenic 40.0%
CTGAAGTCACGGTCAAAAAT+AGG - chr3_2:88010150-88010169 Msa0435000:CDS 40.0%
GACAATTATGACTACACAGC+TGG - chr3_2:88010228-88010247 Msa0435000:intron 40.0%
TTATGACTACACAGCTGGAA+AGG - chr3_2:88010233-88010252 Msa0435000:intron 40.0%
TTGAACTAACTCAACAGAGC+AGG - chr3_2:88010295-88010314 Msa0435000:intron 40.0%
ACGAAGATTCAAACAAAGCC+AGG - chr3_2:88010517-88010536 Msa0435000:CDS 40.0%
CAACTGTCATATGTTTAGGG+AGG - chr3_2:88010637-88010656 Msa0435000:CDS 40.0%
! GTCTAATTAGATGGCATTGG+AGG + chr3_2:88010723-88010742 None:intergenic 40.0%
GAGGTCTAATTAGATGGCAT+TGG + chr3_2:88010726-88010745 None:intergenic 40.0%
GGTCATTAAGAAAGGCAATC+AGG - chr3_2:88010987-88011006 Msa0435000:intron 40.0%
TTCATATTCAGAGCTACAGG+AGG - chr3_2:88011014-88011033 Msa0435000:intron 40.0%
GACAACCTGAAACACATGAA+AGG - chr3_2:88011106-88011125 Msa0435000:intron 40.0%
ACACATGAAAGGAAAAGGGA+AGG - chr3_2:88011117-88011136 Msa0435000:intron 40.0%
CACATGAAAGGAAAAGGGAA+GGG - chr3_2:88011118-88011137 Msa0435000:intron 40.0%
ACATGAAAGGAAAAGGGAAG+GGG - chr3_2:88011119-88011138 Msa0435000:intron 40.0%
GTACAGATTGTGGGTCAATT+TGG - chr3_2:88011150-88011169 Msa0435000:CDS 40.0%
GGGTCAATTTGGAAATGCTA+TGG - chr3_2:88011161-88011180 Msa0435000:CDS 40.0%
AATTAGGGTTGTGCATGGAT+TGG - chr3_2:88011251-88011270 Msa0435000:CDS 40.0%
!!! CCACTTTTGGGACAGAAATT+TGG + chr3_2:88011291-88011310 None:intergenic 40.0%
CCAAATTTCTGTCCCAAAAG+TGG - chr3_2:88011288-88011307 Msa0435000:CDS 40.0%
!! TTGACTTGCAGAGAATGGAA+TGG - chr3_2:88011430-88011449 Msa0435000:exon 40.0%
AATCCTCCAGCACAGATATA+TGG - chr3_2:88011483-88011502 Msa0435000:five_prime_UTR 40.0%
TCGAACATCCTCAATGGACA+GGG + chr3_2:88004722-88004741 Msa0434990:intron 45.0%
TGAGGATGTTCGACAAGTTG+AGG - chr3_2:88004729-88004748 Msa0435000:intron 45.0%
!!! GCATTTTGACTGGTGGAATG+TGG - chr3_2:88005019-88005038 Msa0435000:intron 45.0%
!! GTCCAGAAGTACTATCCACA+TGG - chr3_2:88005303-88005322 Msa0435000:intron 45.0%
TCCACATGGTTATCATGGTG+TGG - chr3_2:88005317-88005336 Msa0435000:intron 45.0%
TCCACACCATGATAACCATG+TGG + chr3_2:88005321-88005340 Msa0434990:intron 45.0%
TGGTTATCATGGTGTGGACA+AGG - chr3_2:88005323-88005342 Msa0435000:intron 45.0%
TTATCATGGTGTGGACAAGG+AGG - chr3_2:88005326-88005345 Msa0435000:intron 45.0%
TATCATGGTGTGGACAAGGA+GGG - chr3_2:88005327-88005346 Msa0435000:intron 45.0%
TTAGCAGCTATAGAGCAAGC+TGG + chr3_2:88005477-88005496 Msa0434990:intron 45.0%
GCTCACTGAGAACTTATAGC+TGG + chr3_2:88006489-88006508 Msa0434990:intron 45.0%
! GAGCTACCAGAATTTCTAGG+CGG - chr3_2:88006505-88006524 Msa0435000:intron 45.0%
CAACTACCGCCTAGAAATTC+TGG + chr3_2:88006514-88006533 Msa0434990:intron 45.0%
TGCACCTGTGTAGATCATGA+TGG - chr3_2:88006532-88006551 Msa0435000:intron 45.0%
ACAGCCATCATGATCTACAC+AGG + chr3_2:88006539-88006558 Msa0434990:intron 45.0%
GGCTGTATGACATCCGATAA+AGG - chr3_2:88006553-88006572 Msa0435000:intron 45.0%
TGCATGCAGATGGTTCTTAG+TGG - chr3_2:88006701-88006720 Msa0435000:intron 45.0%
CGTAACAATTTCCAACGACG+GGG - chr3_2:88006748-88006767 Msa0435000:intron 45.0%
GTAACAATTTCCAACGACGG+GGG - chr3_2:88006749-88006768 Msa0435000:intron 45.0%
TAACAATTTCCAACGACGGG+GGG - chr3_2:88006750-88006769 Msa0435000:intron 45.0%
! ACTGACTCATGTCCAAGAAG+AGG - chr3_2:88006991-88007010 Msa0435000:intron 45.0%
GTAACCAGGACTGTTACAGT+GGG - chr3_2:88007370-88007389 Msa0435000:CDS 45.0%
GACAAAGGGAGTAAAAAGGG+AGG - chr3_2:88007441-88007460 Msa0435000:CDS 45.0%
TCAAGGTAGAAGATGAGGAG+GGG + chr3_2:88007495-88007514 Msa0434990:three_prime_UTR 45.0%
GCGTTTCAAGGTAGAAGATG+AGG + chr3_2:88007500-88007519 Msa0434990:three_prime_UTR 45.0%
GAATGCTGCAGTTTATCGTG+TGG - chr3_2:88007597-88007616 Msa0435000:intron 45.0%
! TCCTAAACAGGCTTTGTACG+AGG - chr3_2:88007797-88007816 Msa0435000:intron 45.0%
! GTGTACATGACGGAGTTGTT+TGG - chr3_2:88008014-88008033 Msa0435000:intron 45.0%
! TACATGACGGAGTTGTTTGG+TGG - chr3_2:88008017-88008036 Msa0435000:intron 45.0%
TCTCTCTCTCTCTTTGCACT+GGG - chr3_2:88008045-88008064 Msa0435000:intron 45.0%
CTGCTTAAGGTGACAGTGAT+TGG + chr3_2:88008517-88008536 None:intergenic 45.0%
AAACTGCGCTGTTCAAGATG+CGG + chr3_2:88008579-88008598 None:intergenic 45.0%
!! TTGACTCTCAGCTTTTGGCT+GGG + chr3_2:88008655-88008674 None:intergenic 45.0%
! TTTGACTCTCAGCTTTTGGC+TGG + chr3_2:88008656-88008675 None:intergenic 45.0%
!! TTCTGCTGGTGCTTGTTTTC+TGG + chr3_2:88008854-88008873 None:intergenic 45.0%
GGTGAACAGGGTAGTATAGA+TGG + chr3_2:88008915-88008934 None:intergenic 45.0%
AAGAGCAGGCCAACTAATTC+TGG - chr3_2:88009180-88009199 Msa0435000:CDS 45.0%
! CAGGCCAACTAATTCTGGAA+AGG - chr3_2:88009185-88009204 Msa0435000:CDS 45.0%
TGGCACGAAAACCAAAGCAA+TGG - chr3_2:88009340-88009359 Msa0435000:intron 45.0%
CACGAAAACCAAAGCAATGG+AGG - chr3_2:88009343-88009362 Msa0435000:intron 45.0%
ACTTTCTCCCTCCATTGCTT+TGG + chr3_2:88009354-88009373 None:intergenic 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG + chr3_2:88009668-88009687 None:intergenic 45.0%
CTACCCATAAAGGATTGCTC+TGG - chr3_2:88009784-88009803 Msa0435000:CDS 45.0%
! ACAAAATGGACTTGTGGGGT+TGG + chr3_2:88009965-88009984 None:intergenic 45.0%
AATCCTAGTGTATCCCTTGG+GGG - chr3_2:88010010-88010029 Msa0435000:intron 45.0%
TTCCTTTGGTCAGCCTAGTT+TGG + chr3_2:88010116-88010135 None:intergenic 45.0%
! CTCAGATCTGGGTTTTCCTT+TGG + chr3_2:88010130-88010149 None:intergenic 45.0%
TGTTATGAACATCTCGGTGG+CGG + chr3_2:88011391-88011410 None:intergenic 45.0%
TGCTGTTATGAACATCTCGG+TGG + chr3_2:88011394-88011413 None:intergenic 45.0%
ACTTGCAGAGAATGGAATGG+AGG - chr3_2:88011433-88011452 Msa0435000:exon 45.0%
GAGGATTGTGTATACTGCTC+TGG + chr3_2:88011470-88011489 None:intergenic 45.0%
TCCAGCACAGATATATGGCT+CGG - chr3_2:88011488-88011507 Msa0435000:five_prime_UTR 45.0%
!! AAGAAAAATATATAAATAAA+GGG + chr3_2:88009630-88009649 None:intergenic 5.0%
!! TAAGAAAAATATATAAATAA+AGG + chr3_2:88009631-88009650 None:intergenic 5.0%
GCAGCAAAAGTAGTGGCAGT+AGG - chr3_2:88004689-88004708 Msa0435000:intron 50.0%
GAGCAATTCCCTGTCCATTG+AGG - chr3_2:88004711-88004730 Msa0435000:intron 50.0%
GTCGAACATCCTCAATGGAC+AGG + chr3_2:88004723-88004742 Msa0434990:intron 50.0%
TGACTGGTGGAATGTGGACA+TGG - chr3_2:88005025-88005044 Msa0435000:intron 50.0%
TGTGGGCCAACATGATCCAA+TGG - chr3_2:88005110-88005129 Msa0435000:intron 50.0%
GATGAGTTCTCGAGCAGACT+TGG + chr3_2:88005799-88005818 Msa0434990:intron 50.0%
TGACATCCGATAAAGGGCCA+TGG - chr3_2:88006560-88006579 Msa0435000:intron 50.0%
GTCTTGCCATGGCCCTTTAT+CGG + chr3_2:88006569-88006588 Msa0434990:intron 50.0%
AACAATTTCCAACGACGGGG+GGG - chr3_2:88006751-88006770 Msa0435000:intron 50.0%
ATCACCTCTCCCAAAGCATG+TGG - chr3_2:88006950-88006969 Msa0435000:intron 50.0%
TCACCTCTCCCAAAGCATGT+GGG - chr3_2:88006951-88006970 Msa0435000:intron 50.0%
!! ATTCCCACATGCTTTGGGAG+AGG + chr3_2:88006957-88006976 Msa0434990:intron 50.0%
! GATAAGGTTGGTCATACCGG+TGG - chr3_2:88007116-88007135 Msa0435000:intron 50.0%
GCAGCACCACGAAACTCATT+TGG - chr3_2:88007209-88007228 Msa0435000:intron 50.0%
GGTAACCAGGACTGTTACAG+TGG - chr3_2:88007369-88007388 Msa0435000:CDS 50.0%
!! GGGGTTTGGCTTTGTGAATC+TGG + chr3_2:88007476-88007495 Msa0434990:three_prime_UTR 50.0%
GTAGAAGATGAGGAGGGGTT+TGG + chr3_2:88007490-88007509 Msa0434990:three_prime_UTR 50.0%
! AAGCTCACTGAGGCGTTTCA+AGG + chr3_2:88007512-88007531 Msa0434990:three_prime_UTR 50.0%
TGCCATGCCAAGTGAGAAAG+AGG - chr3_2:88007567-88007586 Msa0435000:intron 50.0%
CTCCTCTTTCTCACTTGGCA+TGG + chr3_2:88007572-88007591 Msa0434990:three_prime_UTR 50.0%
AGCAGCTCCTCTTTCTCACT+TGG + chr3_2:88007577-88007596 Msa0434990:three_prime_UTR 50.0%
GCCTCGTACAAAGCCTGTTT+AGG + chr3_2:88007801-88007820 Msa0434990:three_prime_UTR 50.0%
TGTCTGTAAAGCAGTGCTGC+TGG - chr3_2:88007981-88008000 Msa0435000:intron 50.0%
CTCTCTCTCTCTCTTTGCAC+TGG - chr3_2:88008044-88008063 Msa0435000:intron 50.0%
CTGTTCAAGATGCGGGCAAA+AGG + chr3_2:88008571-88008590 None:intergenic 50.0%
AACTGCGCTGTTCAAGATGC+GGG + chr3_2:88008578-88008597 None:intergenic 50.0%
TGGGTGAGATACTGAAGAGC+AGG - chr3_2:88009166-88009185 Msa0435000:intron 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr3_2:88009478-88009497 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG - chr3_2:88009670-88009689 Msa0435000:intron 50.0%
CTCAGATAAAACGGGACGGA+GGG - chr3_2:88009674-88009693 Msa0435000:intron 50.0%
!! CGGAGGGAGTATCTGATATC+AGG - chr3_2:88009690-88009709 Msa0435000:intron 50.0%
CTGATATCAGGCTACCAGCA+AGG - chr3_2:88009702-88009721 Msa0435000:intron 50.0%
GGGGTTGGATTTGCAGAAGT+AGG + chr3_2:88009950-88009969 None:intergenic 50.0%
TTCTCTCTCTCTTCCCCCAA+GGG + chr3_2:88010026-88010045 None:intergenic 50.0%
TTTCTCTCTCTCTTCCCCCA+AGG + chr3_2:88010027-88010046 None:intergenic 50.0%
TTGGGGGAAGAGAGAGAGAA+AGG - chr3_2:88010026-88010045 Msa0435000:intron 50.0%
AGCCAAACTAGGCTGACCAA+AGG - chr3_2:88010111-88010130 Msa0435000:intron 50.0%
CGTGACTTCAGCTCAGATCT+GGG + chr3_2:88010141-88010160 None:intergenic 50.0%
CCAGATCTGAGCTGAAGTCA+CGG - chr3_2:88010139-88010158 Msa0435000:CDS 50.0%
TGAAAGGAAAAGGGAAGGGG+CGG - chr3_2:88011122-88011141 Msa0435000:intron 50.0%
GCGGTCTTCGTACAGATTGT+GGG - chr3_2:88011141-88011160 Msa0435000:CDS 50.0%
CTGAGACTGCGAGGATTGTT+CGG + chr3_2:88011367-88011386 None:intergenic 50.0%
GAGCCATATATCTGTGCTGG+AGG + chr3_2:88011489-88011508 None:intergenic 50.0%
TCCGAGCCATATATCTGTGC+TGG + chr3_2:88011492-88011511 None:intergenic 50.0%
GGGCCAACATGATCCAATGG+AGG - chr3_2:88005113-88005132 Msa0435000:intron 55.0%
!! GGTGCTGCTTGCTTCTCCTT+TGG + chr3_2:88007197-88007216 Msa0434990:intron 55.0%
GATGCCCACTGTAACAGTCC+TGG + chr3_2:88007377-88007396 Msa0434990:three_prime_UTR 55.0%
! CAGCGCAGTTTTGCTGACGT+CGG - chr3_2:88008588-88008607 Msa0435000:CDS 55.0%
AAGAGATACTCCCTCCGTCC+CGG - chr3_2:88009461-88009480 Msa0435000:intron 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr3_2:88009474-88009493 None:intergenic 55.0%
GCTCAGATAAAACGGGACGG+AGG - chr3_2:88009673-88009692 Msa0435000:intron 55.0%
GTCAGCACTGCAAACCTTGC+TGG + chr3_2:88009719-88009738 None:intergenic 55.0%
CTTCCCCCAAGGGATACACT+AGG + chr3_2:88010016-88010035 None:intergenic 55.0%
AGTCACGCCACAGCCAAACT+AGG - chr3_2:88010100-88010119 Msa0435000:intron 55.0%
TGGTCAGCCTAGTTTGGCTG+TGG + chr3_2:88010110-88010129 None:intergenic 55.0%
CCGTGACTTCAGCTCAGATC+TGG + chr3_2:88010142-88010161 None:intergenic 55.0%
GGCGGTCTTCGTACAGATTG+TGG - chr3_2:88011140-88011159 Msa0435000:CDS 55.0%
CGAACAATCCTCGCAGTCTC+AGG - chr3_2:88011365-88011384 Msa0435000:CDS 55.0%
TTCAATCACCCCCCCGTCGT+TGG + chr3_2:88006762-88006781 Msa0434990:intron 60.0%
CTTTGCACTGGGCGTGTGTG+TGG - chr3_2:88008056-88008075 Msa0435000:intron 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr3_2:88009475-88009494 None:intergenic 60.0%
CTGTGTGGCGTACTGCAACC+TGG + chr3_2:88010538-88010557 None:intergenic 60.0%
! GGTGGCGGCCTGAGACTGCG+AGG + chr3_2:88011376-88011395 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 88004445 88011530 88004445 ID=Msa0435000;Name=Msa0435000
chr3_2 mRNA 88004445 88011530 88004445 ID=Msa0435000-mRNA-1;Parent=Msa0435000;Name=Msa0435000-mRNA-1;_AED=0.20;_eAED=0.24;_QI=87|0.78|0.8|0.93|1|1|15|0|791
chr3_2 exon 88004445 88004594 88004445 ID=Msa0435000-mRNA-1:exon:25846;Parent=Msa0435000-mRNA-1
chr3_2 exon 88005721 88005885 88005721 ID=Msa0435000-mRNA-1:exon:25845;Parent=Msa0435000-mRNA-1
chr3_2 exon 88007241 88007576 88007241 ID=Msa0435000-mRNA-1:exon:25844;Parent=Msa0435000-mRNA-1
chr3_2 exon 88008094 88008168 88008094 ID=Msa0435000-mRNA-1:exon:25843;Parent=Msa0435000-mRNA-1
chr3_2 exon 88008321 88008619 88008321 ID=Msa0435000-mRNA-1:exon:25842;Parent=Msa0435000-mRNA-1
chr3_2 exon 88008736 88008871 88008736 ID=Msa0435000-mRNA-1:exon:25841;Parent=Msa0435000-mRNA-1
chr3_2 exon 88008963 88009076 88008963 ID=Msa0435000-mRNA-1:exon:25840;Parent=Msa0435000-mRNA-1
chr3_2 exon 88009170 88009265 88009170 ID=Msa0435000-mRNA-1:exon:25839;Parent=Msa0435000-mRNA-1
chr3_2 exon 88009372 88009471 88009372 ID=Msa0435000-mRNA-1:exon:25838;Parent=Msa0435000-mRNA-1
chr3_2 exon 88009561 88009610 88009561 ID=Msa0435000-mRNA-1:exon:25837;Parent=Msa0435000-mRNA-1
chr3_2 exon 88009732 88009833 88009732 ID=Msa0435000-mRNA-1:exon:25836;Parent=Msa0435000-mRNA-1
chr3_2 exon 88010118 88010195 88010118 ID=Msa0435000-mRNA-1:exon:25835;Parent=Msa0435000-mRNA-1
chr3_2 exon 88010433 88010699 88010433 ID=Msa0435000-mRNA-1:exon:25834;Parent=Msa0435000-mRNA-1
chr3_2 exon 88010810 88010909 88010810 ID=Msa0435000-mRNA-1:exon:25833;Parent=Msa0435000-mRNA-1
chr3_2 exon 88011136 88011530 88011136 ID=Msa0435000-mRNA-1:exon:25832;Parent=Msa0435000-mRNA-1
chr3_2 five_prime_UTR 88011444 88011530 88011444 ID=Msa0435000-mRNA-1:five_prime_utr;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88011136 88011443 88011136 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88010810 88010909 88010810 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88010433 88010699 88010433 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88010118 88010195 88010118 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88009732 88009833 88009732 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88009561 88009610 88009561 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88009372 88009471 88009372 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88009170 88009265 88009170 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88008963 88009076 88008963 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88008736 88008871 88008736 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88008321 88008619 88008321 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88008094 88008168 88008094 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88007241 88007576 88007241 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88005721 88005885 88005721 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
chr3_2 CDS 88004445 88004594 88004445 ID=Msa0435000-mRNA-1:cds;Parent=Msa0435000-mRNA-1
Gene Sequence

>Msa0435000

ATGAATTATGACACCTTTGAAACACTACTGATTATAGTAGGCAACGATGAAAGAAGAGAGAGTTCAGAGGATGATAAGTGGAAAAGAATTGGAAGTCTTAAAAAGAAAGCAATAAATGCATCATGCAAATTAAGGCATTCTCTTAAGAAGAAAAGAAGCAGCAAAAGTAGTGGCAGTAGGAGCAATTCCCTGTCCATTGAGGATGTTCGACAAGTTGAGGAGCTAAATGCAGTCGATGCATTTCGACAAACACTTCTACTAGACAACTTGCTTCCTTCAATACATGATGACTATCATATGTTATTGAGATTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCTTATGTGGGCCAACATGATCCAATGGAGGAAAGACTATGGTACAGATACAATTATAGAGGATTTTGATTTCAAGGAGTTGCAAGAAGTCCAGAAGTACTATCCACATGGTTATCATGGTGTGGACAAGGAGGGAAGACCTGTTTATATTGAGAGGCTAGGAAAAGTTGATCCCAATAGGCTTATGCAAGTAACTACCATGGAAAGATATTTGAGATACCATGTGCAGGGTTTTGAGAAAACATTCTCTGTGAAGTTTCCAGCTTGCTCTATAGCTGCTAAGAGACACATAGGTTCCAGCACAACAATTTTGGATGTTCAAGGCGTGGGTTTCAAAAACTTCACCAAGTCTGCTCGAGAACTCATCATTCAGCTGCAGAAGATTGATAGTGATTACTATCCTGAAACACTTCATCAAATGTTTATCATCAATGCTGGTCCTGGTTTTAAGCTTCTATGGAACACAGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATGTTCTTGGAAACAAGTTCCACAGTAAATTACTTGAGATTATCGATGCGAGTGAGCTACCAGAATTTCTAGGCGGTAGTTGCACCTGTGTAGATCATGATGGCTGTATGACATCCGATAAAGGGCCATGGCAAGACCAAAACATTTTAAAGATGGTTCTTAGTGGTAAAGTGCAATGTTCTAAACAAATCGTAACAATTTCCAACGACGGGGGGGTGATTGAATGTGATAAAACATCTTTTCCAAAGGCAAAAAGTGGCTGTACATCTACTGGAGAATCAGTATCTGAAGTTGAAGATATCACCTCTCCCAAAGCATGTGGGAATTCTATGAACCCTATACTGACTCATGTCCAAGAAGAGGCAAGATTTGTTGATAAGGTTGGTCATACCGGTGGTTTTCCTGAGTATGATGAATATGTTCCCATGGTTGACAAGATTATTGATGTTGGACCAAAGGAGAAGCAAGCAGCACCACGAAACTCATTTGGCTCAAAAGAAAATCTGCTTTTGGTAACCAGGACTGTTACAGTGGGCATCGTGTTTGCCCTTTTTGCCTTTGTTCGAACAATAGCATTTCGTGTGACAAAGGGAGTAAAAAGGGAGGAACTTGCTACCAGATTCACAAAGCCAAACCCCTCCTCATCTTCTACCTTGAAACGCCTCAGTGAGCTTGAAAAAAATGTTGACATACTACAGTCAAAACTTAATGCCATGCCAAGTGAGAAAGAGGAGCTGCTGAATGCTGCAGTTTATCGTGTGGATGCATTGGAAGCAGAGCTCATTGCTACAAAGAAGGCTTTGTACGAGGCTTTAATGAGACAAGAAGAACTTTTGGCATACATAGACAGTCGGGAAAAAAGCAAATTCAAGAGTGTCTTCCTTTTTCTCACCTCTCAACTTTTCCTTAGGAGTCCCTCTAGTCAACCAATTCTTGCCGATTATTTGAAATATTCACACATTGATGACCCTCATCATGTCAGTTTCACCAATCACTGTCACCTTAAGCAGTACCTTTTACAAATCGATATTAACTTCATCGCCTTTTGCCCGCATCTTGAACAGCGCAGTTTTGCTGACGTCGGAGTCTCTGCAATACAAGAGTGCATCAGTTATGCAAATACTTCCCAGCCAAAAGCTGAGAGTCAAAATAAACAAACAACAAATAGTACAGAAGCATGTCAGTGTAAGGAAAGAAAGAATTTAGAAACAGATCATCAGTCACGCCACAGCCAAACTAGGCTGACCAAAGGAAAACCCAGATCTGAGCTGAAGTCACGGTCAAAAATAGGCTTTGCTCTGCCAAATTCTCAGTACTTCTTACTGCATTACACTGGGAAGTTAGCAGACAATTATGACTACACAGCTGGAAAGTCTCAGGCCGCCACCGAGATGTTCATAACAGCAACATACCCTAGATATTTTGACTTGCAGAGAATGGAATGGAGGAATCACACTTTCCAGAGCAGTATACACAATCCTCCAGCACAGATATATGGCTCGGAGAACCATGAAATCGTATAA
Protein sequence

>Msa0435000

MNYDTFETLLIIVGNDERRESSEDDKWKRIGSLKKKAINASCKLRHSLKKKRSSKSSGSRSNSLSIEDVRQVEELNAVDAFRQTLLLDNLLPSIHDDYHMLLRFLKARKFDIEKAKLMWANMIQWRKDYGTDTIIEDFDFKELQEVQKYYPHGYHGVDKEGRPVYIERLGKVDPNRLMQVTTMERYLRYHVQGFEKTFSVKFPACSIAAKRHIGSSTTILDVQGVGFKNFTKSARELIIQLQKIDSDYYPETLHQMFIINAGPGFKLLWNTVKTFLDPKTTSKIHVLGNKFHSKLLEIIDASELPEFLGGSCTCVDHDGCMTSDKGPWQDQNILKMVLSGKVQCSKQIVTISNDGGVIECDKTSFPKAKSGCTSTGESVSEVEDITSPKACGNSMNPILTHVQEEARFVDKVGHTGGFPEYDEYVPMVDKIIDVGPKEKQAAPRNSFGSKENLLLVTRTVTVGIVFALFAFVRTIAFRVTKGVKREELATRFTKPNPSSSSTLKRLSELEKNVDILQSKLNAMPSEKEELLNAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSREKSKFKSVFLFLTSQLFLRSPSSQPILADYLKYSHIDDPHHVSFTNHCHLKQYLLQIDINFIAFCPHLEQRSFADVGVSAIQECISYANTSQPKAESQNKQTTNSTEACQCKERKNLETDHQSRHSQTRLTKGKPRSELKSRSKIGFALPNSQYFLLHYTGKLADNYDYTAGKSQAATEMFITATYPRYFDLQRMEWRNHTFQSSIHNPPAQIYGSENHEIV*