Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0271800 | XP_003593196.2 | 95.065 | 851 | 12 | 3 | 1 | 823 | 1 | 849 | 0.0 | 1630 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0271800 | sp|Q9FY75|POT7_ARATH | 74.596 | 866 | 169 | 7 | 1 | 823 | 1 | 858 | 0.0 | 1253 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0271800 | G7INV8 | 95.065 | 851 | 12 | 3 | 1 | 823 | 1 | 849 | 0.0 | 1630 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0271800 | Msa0310420 | 0.942239 | 1.022074e-101 | -8.615850e-47 |
Msa0271800 | Msa0475620 | 0.808183 | 3.510243e-50 | -8.615850e-47 |
Msa0271800 | Msa0591780 | 0.803230 | 3.849500e-49 | -8.615850e-47 |
Msa0271800 | Msa0698760 | 0.801725 | 7.864526e-49 | -8.615850e-47 |
Msa0271800 | Msa0847390 | 0.814879 | 1.230507e-51 | -8.615850e-47 |
Msa0271800 | Msa1215960 | 0.807321 | 5.352480e-50 | -8.615850e-47 |
Msa0271800 | Msa1301790 | 0.809228 | 2.099430e-50 | -8.615850e-47 |
Msa0271800 | Msa1303720 | 0.820240 | 7.613936e-53 | -8.615850e-47 |
Msa0271800 | Msa1372300 | 0.957655 | 1.606670e-115 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0271800 | MtrunA17_Chr2g0279131 | 95.065 | 851 | 12 | 3 | 1 | 823 | 1 | 849 | 0.0 | 1630 |
Msa0271800 | MtrunA17_Chr5g0429991 | 81.154 | 849 | 125 | 5 | 1 | 823 | 10 | 849 | 0.0 | 1359 |
Msa0271800 | MtrunA17_Chr8g0365001 | 52.821 | 833 | 346 | 8 | 21 | 823 | 25 | 840 | 0.0 | 866 |
Msa0271800 | MtrunA17_Chr4g0055471 | 41.384 | 795 | 406 | 9 | 72 | 823 | 38 | 815 | 0.0 | 625 |
Msa0271800 | MtrunA17_Chr2g0297291 | 41.045 | 804 | 422 | 12 | 52 | 823 | 6 | 789 | 0.0 | 612 |
Msa0271800 | MtrunA17_Chr4g0052401 | 42.105 | 779 | 404 | 9 | 79 | 823 | 22 | 787 | 0.0 | 601 |
Msa0271800 | MtrunA17_Chr7g0268981 | 39.136 | 810 | 410 | 10 | 52 | 821 | 5 | 771 | 0.0 | 598 |
Msa0271800 | MtrunA17_Chr6g0461871 | 38.924 | 799 | 417 | 8 | 79 | 823 | 4 | 785 | 0.0 | 580 |
Msa0271800 | MtrunA17_Chr8g0380281 | 39.747 | 790 | 422 | 7 | 72 | 823 | 9 | 782 | 0.0 | 568 |
Msa0271800 | MtrunA17_Chr5g0430731 | 37.887 | 776 | 413 | 9 | 85 | 823 | 11 | 754 | 0.0 | 556 |
Msa0271800 | MtrunA17_Chr6g0451081 | 39.052 | 781 | 418 | 11 | 88 | 823 | 9 | 776 | 0.0 | 554 |
Msa0271800 | MtrunA17_Chr3g0128831 | 38.432 | 791 | 425 | 13 | 86 | 823 | 13 | 794 | 0.0 | 539 |
Msa0271800 | MtrunA17_Chr8g0387661 | 37.061 | 769 | 432 | 10 | 102 | 823 | 29 | 792 | 1.41e-159 | 484 |
Msa0271800 | MtrunA17_Chr8g0344561 | 39.363 | 597 | 322 | 5 | 226 | 821 | 13 | 570 | 1.07e-146 | 443 |
Msa0271800 | MtrunA17_Chr8g0365031 | 38.144 | 582 | 286 | 5 | 244 | 821 | 38 | 549 | 1.84e-143 | 434 |
Msa0271800 | MtrunA17_Chr8g0393241 | 31.790 | 799 | 464 | 12 | 89 | 819 | 10 | 795 | 1.11e-130 | 409 |
Msa0271800 | MtrunA17_Chr8g0375411 | 35.276 | 635 | 379 | 7 | 100 | 707 | 29 | 658 | 6.64e-129 | 401 |
Msa0271800 | MtrunA17_Chr5g0430571 | 35.959 | 584 | 305 | 9 | 244 | 823 | 17 | 535 | 8.30e-119 | 370 |
Msa0271800 | MtrunA17_Chr8g0344591 | 40.000 | 450 | 246 | 4 | 226 | 675 | 13 | 438 | 3.37e-111 | 347 |
Msa0271800 | MtrunA17_Chr2g0297311 | 43.590 | 390 | 193 | 3 | 108 | 472 | 58 | 445 | 1.15e-106 | 335 |
Msa0271800 | MtrunA17_Chr5g0413721 | 38.568 | 433 | 227 | 7 | 85 | 480 | 6 | 436 | 1.30e-89 | 302 |
Msa0271800 | MtrunA17_Chr5g0413721 | 34.456 | 386 | 236 | 5 | 448 | 823 | 493 | 871 | 1.29e-62 | 226 |
Msa0271800 | MtrunA17_Chr2g0297321 | 40.227 | 353 | 202 | 5 | 472 | 823 | 3 | 347 | 6.33e-84 | 271 |
Msa0271800 | MtrunA17_Chr1g0159401 | 76.471 | 119 | 21 | 2 | 224 | 342 | 12 | 123 | 2.73e-52 | 179 |
Msa0271800 | MtrunA17_Chr5g0413751 | 39.409 | 203 | 114 | 1 | 445 | 647 | 115 | 308 | 1.04e-44 | 163 |
Msa0271800 | MtrunA17_Chr6g0467721 | 59.259 | 162 | 55 | 4 | 229 | 385 | 8 | 163 | 2.11e-39 | 145 |
Msa0271800 | MtrunA17_Chr8g0365041 | 35.294 | 221 | 110 | 5 | 52 | 241 | 11 | 229 | 1.93e-34 | 132 |
Msa0271800 | MtrunA17_Chr8g0344581 | 40.132 | 152 | 61 | 3 | 100 | 226 | 4 | 150 | 5.81e-28 | 110 |
Msa0271800 | MtrunA17_Chr8g0344551 | 40.132 | 152 | 61 | 3 | 100 | 226 | 4 | 150 | 9.79e-28 | 109 |
Msa0271800 | MtrunA17_Chr5g0430551 | 34.591 | 159 | 76 | 3 | 95 | 226 | 6 | 163 | 1.40e-20 | 90.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0271800 | AT5G09400.1 | 74.596 | 866 | 169 | 7 | 1 | 823 | 1 | 858 | 0.0 | 1253 |
Msa0271800 | AT4G33530.1 | 70.344 | 843 | 220 | 3 | 7 | 823 | 17 | 855 | 0.0 | 1172 |
Msa0271800 | AT4G33530.2 | 75.935 | 615 | 147 | 1 | 210 | 823 | 13 | 627 | 0.0 | 955 |
Msa0271800 | AT1G60160.1 | 52.494 | 842 | 359 | 5 | 7 | 823 | 2 | 827 | 0.0 | 874 |
Msa0271800 | AT4G13420.1 | 39.627 | 805 | 430 | 11 | 50 | 821 | 2 | 783 | 0.0 | 606 |
Msa0271800 | AT2G35060.4 | 42.768 | 802 | 404 | 12 | 53 | 823 | 15 | 792 | 0.0 | 592 |
Msa0271800 | AT2G35060.1 | 42.768 | 802 | 404 | 12 | 53 | 823 | 15 | 792 | 0.0 | 592 |
Msa0271800 | AT2G35060.3 | 42.768 | 802 | 404 | 12 | 53 | 823 | 15 | 792 | 0.0 | 592 |
Msa0271800 | AT2G35060.2 | 42.715 | 803 | 404 | 12 | 53 | 823 | 15 | 793 | 0.0 | 592 |
Msa0271800 | AT1G31120.1 | 42.274 | 809 | 423 | 11 | 44 | 823 | 3 | 796 | 0.0 | 588 |
Msa0271800 | AT4G19960.2 | 41.567 | 753 | 400 | 7 | 104 | 823 | 62 | 807 | 0.0 | 575 |
Msa0271800 | AT4G19960.1 | 40.702 | 769 | 400 | 8 | 104 | 823 | 62 | 823 | 0.0 | 565 |
Msa0271800 | AT4G19960.3 | 40.180 | 779 | 400 | 8 | 104 | 823 | 62 | 833 | 0.0 | 561 |
Msa0271800 | AT5G14880.1 | 40.000 | 790 | 403 | 13 | 88 | 823 | 9 | 781 | 5.42e-180 | 537 |
Msa0271800 | AT2G40540.1 | 37.692 | 780 | 422 | 12 | 100 | 823 | 23 | 794 | 5.83e-179 | 535 |
Msa0271800 | AT2G40540.5 | 37.692 | 780 | 422 | 12 | 100 | 823 | 23 | 794 | 5.83e-179 | 535 |
Msa0271800 | AT2G40540.4 | 37.692 | 780 | 422 | 12 | 100 | 823 | 23 | 794 | 5.83e-179 | 535 |
Msa0271800 | AT2G40540.2 | 37.692 | 780 | 422 | 12 | 100 | 823 | 23 | 794 | 5.83e-179 | 535 |
Msa0271800 | AT2G40540.3 | 37.692 | 780 | 422 | 12 | 100 | 823 | 23 | 794 | 5.83e-179 | 535 |
Msa0271800 | AT3G02050.1 | 37.970 | 798 | 419 | 13 | 84 | 823 | 10 | 789 | 2.01e-176 | 528 |
Msa0271800 | AT2G30070.1 | 40.976 | 615 | 334 | 5 | 85 | 672 | 11 | 623 | 1.58e-172 | 515 |
Msa0271800 | AT2G30070.1 | 43.056 | 72 | 41 | 0 | 752 | 823 | 641 | 712 | 3.02e-11 | 67.8 |
Msa0271800 | AT1G70300.1 | 36.295 | 799 | 439 | 14 | 77 | 823 | 2 | 782 | 5.66e-169 | 508 |
Msa0271800 | AT4G23640.1 | 38.372 | 774 | 413 | 10 | 100 | 821 | 12 | 773 | 6.61e-169 | 508 |
Msa0271800 | AT4G19960.4 | 43.322 | 584 | 326 | 3 | 244 | 823 | 4 | 586 | 1.47e-163 | 488 |
Msa0271800 | AT2G30070.2 | 43.651 | 504 | 282 | 2 | 169 | 672 | 2 | 503 | 2.99e-155 | 466 |
Msa0271800 | AT2G30070.2 | 43.056 | 72 | 41 | 0 | 752 | 823 | 521 | 592 | 2.74e-11 | 67.8 |
Find 207 sgRNAs with CRISPR-Local
Find 544 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCACACCTCCCGAAAATTTA+TGG | 0.137961 | 2_3:-3322883 | Msa0271800:CDS |
GTGCCTGCTATTGGGTTATT+TGG | 0.144893 | 2_3:-3323219 | Msa0271800:CDS |
CAGACTCTTGGTGTTGTCTT+TGG | 0.216333 | 2_3:-3325803 | Msa0271800:CDS |
GTTCCATTGGGCAGTAAAAT+TGG | 0.229548 | 2_3:+3320457 | None:intergenic |
ATTCAGTGTTATGTTTAAAA+AGG | 0.231641 | 2_3:-3325753 | Msa0271800:CDS |
CACTCCATTATAAAACCTTT+TGG | 0.239377 | 2_3:+3320393 | None:intergenic |
ATGGATTTGATGCGAGAATT+AGG | 0.247192 | 2_3:-3321856 | Msa0271800:CDS |
TCTGGAGTAGTTTATCTTCT+TGG | 0.260685 | 2_3:-3320643 | Msa0271800:CDS |
CCCTTCTAGTTGTTTGGTCT+TGG | 0.262949 | 2_3:-3320346 | Msa0271800:three_prime_UTR |
ATATTAATAGCGTCTTCTTC+AGG | 0.263031 | 2_3:+3325123 | None:intergenic |
CCCTTGTTATGCTTCTTATA+TGG | 0.278680 | 2_3:-3322080 | Msa0271800:CDS |
ATAATGTATGTATGGAATTA+TGG | 0.280268 | 2_3:-3321922 | Msa0271800:CDS |
TGTTTGCAGGTGGTGCATTT+TGG | 0.288230 | 2_3:-3323025 | Msa0271800:intron |
CTTGATCCCTTCTAGTTGTT+TGG | 0.294922 | 2_3:-3320352 | Msa0271800:three_prime_UTR |
TGTGCTTGCTGGTACTTCTA+TGG | 0.295310 | 2_3:-3325099 | Msa0271800:CDS |
ATTCACAAGGCTAAAGAATC+TGG | 0.298396 | 2_3:-3320661 | Msa0271800:CDS |
TTAGCCTAAAGCTTGATATA+CGG | 0.309324 | 2_3:+3325210 | None:intergenic |
TTGTTCAGCGTACAAAAGTA+TGG | 0.311377 | 2_3:-3323771 | Msa0271800:CDS |
AATGAAAATGAAGACATTCT+TGG | 0.313675 | 2_3:-3325722 | Msa0271800:CDS |
TAGGACCTGCTTTGTTCATA+TGG | 0.318038 | 2_3:-3323725 | Msa0271800:CDS |
CTATTAATATTTGTGCTTGC+TGG | 0.319199 | 2_3:-3325110 | Msa0271800:CDS |
TACTTTAATCTTGATTCCTT+TGG | 0.321978 | 2_3:-3325678 | Msa0271800:CDS |
GTTGAAGCTCTTGATGTTCC+TGG | 0.322031 | 2_3:-3327280 | Msa0271800:CDS |
GGGTCAAGCTGCATACCTTA+TGG | 0.322112 | 2_3:-3323198 | Msa0271800:CDS |
TTTGTTCTCTTGCGGGTATC+GGG | 0.328192 | 2_3:-3323701 | Msa0271800:CDS |
CGGGTTGCTTTATAATGAAT+TGG | 0.333129 | 2_3:-3321800 | Msa0271800:CDS |
TGCCTGCTATTGGGTTATTT+GGG | 0.341959 | 2_3:-3323218 | Msa0271800:CDS |
CAGATGCGTCTTCATCTTCA+TGG | 0.349595 | 2_3:+3327440 | None:intergenic |
ACTCGGAACAGAAGAATAAA+AGG | 0.354316 | 2_3:+3323151 | None:intergenic |
TGCGGTATTCTTCTTGGGAT+TGG | 0.359234 | 2_3:-3322028 | Msa0271800:CDS |
CCTTCTTGAGAAAGAATTGC+AGG | 0.363067 | 2_3:-3320552 | Msa0271800:CDS |
ATATGATTTCAATGGAGTTT+CGG | 0.363177 | 2_3:+3320068 | None:intergenic |
GTTTCTCCTGGCTGCTTCGC+TGG | 0.368299 | 2_3:-3322832 | Msa0271800:CDS |
CACACCTCCCGAAAATTTAT+GGG | 0.370524 | 2_3:-3322882 | Msa0271800:CDS |
CTAAAGCATGGTATTCTCTT+GGG | 0.378949 | 2_3:-3323593 | Msa0271800:CDS |
TGGATTTGATGCGAGAATTA+GGG | 0.380612 | 2_3:-3321855 | Msa0271800:CDS |
CGAGAATTAGGGTCTAATCT+TGG | 0.383348 | 2_3:-3321844 | Msa0271800:CDS |
AAACCATGCTGATGCTGGTC+GGG | 0.383842 | 2_3:-3323174 | Msa0271800:CDS |
GTACGCTGAACAAAACAATA+AGG | 0.384509 | 2_3:+3323781 | None:intergenic |
AACCTCATAGTCATTTCTAT+TGG | 0.385117 | 2_3:+3327255 | None:intergenic |
ACCAAGACCAAACAACTAGA+AGG | 0.386193 | 2_3:+3320345 | None:intergenic |
CTAAGTGTAGTTGAAATCTA+TGG | 0.387167 | 2_3:-3327530 | Msa0271800:exon |
AAATCATAGTGATGTTTGTT+GGG | 0.387872 | 2_3:-3320307 | Msa0271800:three_prime_UTR |
ACAATACGTGCTCCTGGAAT+CGG | 0.389358 | 2_3:-3321820 | Msa0271800:CDS |
TCTGTTGGTGGTTTAAAAGT+TGG | 0.392607 | 2_3:-3324817 | Msa0271800:CDS |
ACTTTCAGGAATTGCTGAGC+TGG | 0.394031 | 2_3:-3322133 | Msa0271800:intron |
GCCCAATGGAACAATTTACT+TGG | 0.395606 | 2_3:-3320446 | Msa0271800:three_prime_UTR |
GTGGCTGCCATCTTCATATA+CGG | 0.397382 | 2_3:-3320279 | Msa0271800:three_prime_UTR |
ATGATCATGGAGTGAATTGC+AGG | 0.399627 | 2_3:+3321733 | None:intergenic |
TCTATATCCCTGTCCTAAAC+TGG | 0.402232 | 2_3:-3322854 | Msa0271800:CDS |
TTCCAAGTAAATTGTTCCAT+TGG | 0.403903 | 2_3:+3320444 | None:intergenic |
TTATAAAGCAACCCGATTCC+AGG | 0.404543 | 2_3:+3321808 | None:intergenic |
CGTAGGAAAGAAAATTGTAT+TGG | 0.404565 | 2_3:-3325831 | Msa0271800:CDS |
CTTTGAGGCACCACAGGAAC+CGG | 0.404600 | 2_3:+3321688 | None:intergenic |
CAAGCACCAGCGAAGCAGCC+AGG | 0.404858 | 2_3:+3322826 | None:intergenic |
CTGTTGGTGGTTTAAAAGTT+GGG | 0.409078 | 2_3:-3324816 | Msa0271800:CDS |
GGTTGTCTTCTGTGTGCAAC+TGG | 0.410842 | 2_3:-3323570 | Msa0271800:intron |
GGTGTTGTCTTTGGTGATGT+TGG | 0.411654 | 2_3:-3325794 | Msa0271800:CDS |
AGATGGAAGTTGGATAATAT+TGG | 0.413109 | 2_3:-3321968 | Msa0271800:CDS |
AAAGGAATACCAGCAATTCT+TGG | 0.414799 | 2_3:-3321775 | Msa0271800:CDS |
TGCGGCACTGATTGCAAGTC+GGG | 0.415495 | 2_3:-3322979 | Msa0271800:CDS |
CAGCCAGGAGAAACCAGTTT+AGG | 0.416163 | 2_3:+3322841 | None:intergenic |
TGTTTCTTATAATGTATGTA+TGG | 0.417252 | 2_3:-3321930 | Msa0271800:CDS |
TCTGTTCAGCATCAAACAAC+AGG | 0.418440 | 2_3:+3320707 | None:intergenic |
AAAAGGAACCTTTCACTTTG+AGG | 0.420669 | 2_3:+3321673 | None:intergenic |
AGAAAATGTCCAAGAATTGC+TGG | 0.423202 | 2_3:+3321766 | None:intergenic |
GCATCTGATGGTAGCTGATT+GGG | 0.423414 | 2_3:+3325233 | None:intergenic |
GAAGAAATAGTAAATATGAA+TGG | 0.426232 | 2_3:+3323629 | None:intergenic |
CTTTCAGGAATTGCTGAGCT+GGG | 0.431720 | 2_3:-3322132 | Msa0271800:intron |
GGCATCTGATGGTAGCTGAT+TGG | 0.432359 | 2_3:+3325232 | None:intergenic |
GTAGTTTATCTTCTTGGTCA+TGG | 0.439210 | 2_3:-3320637 | Msa0271800:CDS |
ATGCCCGTATATCAAGCTTT+AGG | 0.442437 | 2_3:-3325214 | Msa0271800:CDS |
ACTAAAGCATGGTATTCTCT+TGG | 0.444735 | 2_3:-3323594 | Msa0271800:CDS |
AGTTAATAACCTGACATTGC+TGG | 0.450510 | 2_3:+3325053 | None:intergenic |
TGAGGCAGACTCGCCGGAAA+AGG | 0.451759 | 2_3:+3321656 | None:intergenic |
AAGAAATAGTAAATATGAAT+GGG | 0.454594 | 2_3:+3323630 | None:intergenic |
ATATCCAGCATAGATGAGAT+TGG | 0.454646 | 2_3:-3322795 | Msa0271800:CDS |
TGTAAGCATCAAGTATGTTC+CGG | 0.455755 | 2_3:-3321707 | Msa0271800:CDS |
ATATATTTCGTTGTATTGCC+AGG | 0.456519 | 2_3:-3321624 | Msa0271800:intron |
AGTGAATAAACGCTTCCATT+GGG | 0.457065 | 2_3:+3320823 | None:intergenic |
TCCAAGTAAATTGTTCCATT+GGG | 0.457525 | 2_3:+3320445 | None:intergenic |
CGTTGAAGTGGAATTGTTCA+CGG | 0.457690 | 2_3:+3320185 | None:intergenic |
GAGAATTAGGGTCTAATCTT+GGG | 0.458778 | 2_3:-3321843 | Msa0271800:CDS |
TTCAATTCCGTATATGAAGA+TGG | 0.459831 | 2_3:+3320272 | None:intergenic |
TATTAATAGCGTCTTCTTCA+GGG | 0.465224 | 2_3:+3325124 | None:intergenic |
GAAATCATAGTGATGTTTGT+TGG | 0.467836 | 2_3:-3320308 | Msa0271800:three_prime_UTR |
AATGGAAGCGTTTATTCACT+TGG | 0.473194 | 2_3:-3320820 | Msa0271800:CDS |
CAATACGTGCTCCTGGAATC+GGG | 0.474200 | 2_3:-3321819 | Msa0271800:CDS |
TGTCCTAAACTGGTTTCTCC+TGG | 0.474358 | 2_3:-3322844 | Msa0271800:CDS |
TTCTTCATGAAACATTTACT+TGG | 0.476263 | 2_3:-3320091 | Msa0271800:three_prime_UTR |
TCAGCAGCTGCTCAAAAGTC+TGG | 0.476307 | 2_3:+3320962 | None:intergenic |
TATATCAAGCTTTAGGCTAA+AGG | 0.476598 | 2_3:-3325207 | Msa0271800:CDS |
AAAAGTAAATATGATTTCAA+TGG | 0.476934 | 2_3:+3320060 | None:intergenic |
ATGGTAGCTGATTGGGAAGA+AGG | 0.477525 | 2_3:+3325240 | None:intergenic |
CTTGGGACAATACGTGCTCC+TGG | 0.479722 | 2_3:-3321826 | Msa0271800:CDS |
CTTTCACTTTGAGGCACCAC+AGG | 0.480620 | 2_3:+3321682 | None:intergenic |
TAAGAGCAAGGAAGGACTCT+TGG | 0.481413 | 2_3:-3320609 | Msa0271800:CDS |
AGTAAATGTTTCATGAAGAA+AGG | 0.481550 | 2_3:+3320094 | None:intergenic |
CTTTATAATGAATTGGTCAA+AGG | 0.481749 | 2_3:-3321793 | Msa0271800:CDS |
ATGGAAGCGTTTATTCACTT+GGG | 0.492546 | 2_3:-3320819 | Msa0271800:CDS |
GCAAGTTAGCATGACTTACA+TGG | 0.495159 | 2_3:-3320488 | Msa0271800:CDS |
TGAAAGGTCATTGAAAATCA+AGG | 0.496610 | 2_3:-3325168 | Msa0271800:CDS |
GGACTCAACTGAATCACGTT+GGG | 0.497829 | 2_3:-3327467 | Msa0271800:CDS |
AGCATCAAACAACAGGGAAT+CGG | 0.498425 | 2_3:+3320714 | None:intergenic |
TCCTTTGGTGAAGTATATCC+TGG | 0.498531 | 2_3:-3325663 | Msa0271800:intron |
AGGAGAAACCAGTTTAGGAC+AGG | 0.501279 | 2_3:+3322846 | None:intergenic |
CCTGCAATTCTTTCTCAAGA+AGG | 0.501438 | 2_3:+3320552 | None:intergenic |
CAACAGGGAATCGGAGGTTG+TGG | 0.502786 | 2_3:+3320723 | None:intergenic |
AAGTGAATAAACGCTTCCAT+TGG | 0.503620 | 2_3:+3320822 | None:intergenic |
TAGCCTAAAGCTTGATATAC+GGG | 0.505721 | 2_3:+3325211 | None:intergenic |
ATATGACAGAAGTGTCTTGA+GGG | 0.507600 | 2_3:-3323661 | Msa0271800:CDS |
GTTGTAACACCAGCAATGTC+AGG | 0.511990 | 2_3:-3325062 | Msa0271800:intron |
TTAGGACAGGGATATAGATC+TGG | 0.515594 | 2_3:+3322859 | None:intergenic |
TGCCATCCTCTGAGCTTGAA+AGG | 0.517067 | 2_3:-3325184 | Msa0271800:CDS |
GCTGCAGTATTGTCATCTGT+TGG | 0.518428 | 2_3:-3324832 | Msa0271800:intron |
GTTGTACATTCGCGTTGAAG+TGG | 0.519857 | 2_3:+3320173 | None:intergenic |
TAAAGCATGGTATTCTCTTG+GGG | 0.521463 | 2_3:-3323592 | Msa0271800:CDS |
TTTCAGGAATTGCTGAGCTG+GGG | 0.526090 | 2_3:-3322131 | Msa0271800:intron |
GCAGTATTGTCATCTGTTGG+TGG | 0.527231 | 2_3:-3324829 | Msa0271800:intron |
CACAGTGTGATAGCGGTAGC+AGG | 0.530339 | 2_3:-3320419 | Msa0271800:three_prime_UTR |
CAATGCCACTGTACAATACT+CGG | 0.530456 | 2_3:+3320140 | None:intergenic |
ATTTCCAATCTCATCTATGC+TGG | 0.536818 | 2_3:+3322791 | None:intergenic |
TGAGAAAGAATTGCAGGAGG+GGG | 0.537424 | 2_3:-3320546 | Msa0271800:CDS |
GATGAGATTGGAAATGCCTA+TGG | 0.540323 | 2_3:-3322783 | Msa0271800:intron |
ATGGAAAACCATGCTGATGC+TGG | 0.541748 | 2_3:-3323179 | Msa0271800:CDS |
ATATTTACTATTTCTTCAAG+AGG | 0.542838 | 2_3:-3323623 | Msa0271800:CDS |
AATCAACGGTGGATTCTCAA+TGG | 0.542962 | 2_3:-3327488 | Msa0271800:CDS |
GATGCTTACAAATATGATCA+TGG | 0.545546 | 2_3:+3321720 | None:intergenic |
GCGTCCTCTGAATCTCAAAT+CGG | 0.547883 | 2_3:+3327399 | None:intergenic |
ACATCAAATGAATCGATTCG+AGG | 0.550546 | 2_3:+3327301 | None:intergenic |
TGGAGATATAAGAGCAAGGA+AGG | 0.556829 | 2_3:-3320617 | Msa0271800:CDS |
AAAGTATGGAACGAGTAAAG+TGG | 0.559349 | 2_3:-3323757 | Msa0271800:CDS |
AGCGGTAGCAGGTCCCCAAA+AGG | 0.559515 | 2_3:-3320408 | Msa0271800:three_prime_UTR |
ATGTTAGCAATGAGGAAGGT+TGG | 0.560639 | 2_3:+3323002 | None:intergenic |
GTGATCTCTCTTGAGCCTCA+CGG | 0.560643 | 2_3:+3320914 | None:intergenic |
ACTTCTATGGTGATCGCTAA+CGG | 0.560947 | 2_3:-3325086 | Msa0271800:CDS |
TTCAGGAATTGCTGAGCTGG+GGG | 0.562340 | 2_3:-3322130 | Msa0271800:intron |
GACCCAAATAACCCAATAGC+AGG | 0.563900 | 2_3:+3323216 | None:intergenic |
GTGAATAAACGCTTCCATTG+GGG | 0.564522 | 2_3:+3320824 | None:intergenic |
CAATGACCTTTCAAGCTCAG+AGG | 0.565110 | 2_3:+3325178 | None:intergenic |
CTTGATATACGGGCATCTGA+TGG | 0.566143 | 2_3:+3325221 | None:intergenic |
TCCTGAAAATCAGCAAGAAG+AGG | 0.567874 | 2_3:+3320793 | None:intergenic |
CTGTGGTGCCTCAAAGTGAA+AGG | 0.571215 | 2_3:-3321681 | Msa0271800:CDS |
CAAAACCATATGAACAAAGC+AGG | 0.571506 | 2_3:+3323720 | None:intergenic |
CCAAGACCAAACAACTAGAA+GGG | 0.571710 | 2_3:+3320346 | None:intergenic |
AACAAGGGTTACTAAGACAG+TGG | 0.573481 | 2_3:+3322095 | None:intergenic |
TAAAAGACAACTCCCTCTCA+AGG | 0.576106 | 2_3:+3320683 | None:intergenic |
TTCATCTGTTCTGTGGAGCG+TGG | 0.577279 | 2_3:-3321992 | Msa0271800:CDS |
AAAGGAATATATTATAGCAA+AGG | 0.577438 | 2_3:+3320112 | None:intergenic |
CACGGCGTATAAACTTCTCT+AGG | 0.577736 | 2_3:+3320932 | None:intergenic |
GGAGCGTGGCAGATGGAAGT+TGG | 0.577791 | 2_3:-3321978 | Msa0271800:CDS |
TGGAAGCGTTTATTCACTTG+GGG | 0.578719 | 2_3:-3320818 | Msa0271800:CDS |
ATTAAACAATCAACTGCACT+TGG | 0.579481 | 2_3:-3322930 | Msa0271800:CDS |
TGCCAATAGAAATGACTATG+AGG | 0.584828 | 2_3:-3327257 | Msa0271800:intron |
GTTCTGTGGAGCGTGGCAGA+TGG | 0.584980 | 2_3:-3321985 | Msa0271800:CDS |
GTAACAAAGATCTGCAAACA+TGG | 0.587034 | 2_3:+3323374 | None:intergenic |
ACTGAATGTATACAATGGAC+TGG | 0.587271 | 2_3:+3325769 | None:intergenic |
CGCAATGTTAGCAATGAGGA+AGG | 0.588556 | 2_3:+3322998 | None:intergenic |
CAAGTATGTTCCGGTTCCTG+TGG | 0.590365 | 2_3:-3321698 | Msa0271800:CDS |
GACCTTTCAAGCTCAGAGGA+TGG | 0.591500 | 2_3:+3325182 | None:intergenic |
AAGTATGGAACGAGTAAAGT+GGG | 0.598718 | 2_3:-3323756 | Msa0271800:CDS |
TAGTCATTTCTATTGGCACC+AGG | 0.598737 | 2_3:+3327262 | None:intergenic |
GAGATCACTAGAGAGTGATG+TGG | 0.599682 | 2_3:-3320899 | Msa0271800:CDS |
TGATGTTTGTTGGGGTTGCG+TGG | 0.599716 | 2_3:-3320298 | Msa0271800:three_prime_UTR |
TTGTTCTCTTGCGGGTATCG+GGG | 0.600260 | 2_3:-3323700 | Msa0271800:CDS |
TGAATAAACGCTTCCATTGG+GGG | 0.600500 | 2_3:+3320825 | None:intergenic |
TGCTGAACAGAGCCTTGAGA+GGG | 0.603921 | 2_3:-3320695 | Msa0271800:CDS |
TTGCGGCACTGATTGCAAGT+CGG | 0.607457 | 2_3:-3322980 | Msa0271800:CDS |
ATGCTGAACAGAGCCTTGAG+AGG | 0.607553 | 2_3:-3320696 | Msa0271800:CDS |
ACTTGCATCAGATGTGAATG+AGG | 0.609358 | 2_3:+3320505 | None:intergenic |
TTATTGCAGGATATCAGCGT+AGG | 0.610140 | 2_3:-3325848 | Msa0271800:intron |
GCTGAACAAAACAATAAGGC+AGG | 0.611501 | 2_3:+3323785 | None:intergenic |
GCCATATAAGAAGCATAACA+AGG | 0.611953 | 2_3:+3322079 | None:intergenic |
ATAACACTGAATGTATACAA+TGG | 0.612682 | 2_3:+3325764 | None:intergenic |
AAATAACCCAATAGCAGGCA+CGG | 0.613647 | 2_3:+3323221 | None:intergenic |
CTTGAGAAAGAATTGCAGGA+GGG | 0.613692 | 2_3:-3320548 | Msa0271800:CDS |
AAAGCATGGTATTCTCTTGG+GGG | 0.616942 | 2_3:-3323591 | Msa0271800:CDS |
ATCAAACAACAGGGAATCGG+AGG | 0.617754 | 2_3:+3320717 | None:intergenic |
ACCAGGATATACTTCACCAA+AGG | 0.620280 | 2_3:+3325662 | None:intergenic |
GGGATAGATTCGATCAAGCA+AGG | 0.623023 | 2_3:-3324796 | Msa0271800:intron |
AATATGACAGAAGTGTCTTG+AGG | 0.629090 | 2_3:-3323662 | Msa0271800:CDS |
AGAGGAACTCAACTAAAGCA+TGG | 0.629932 | 2_3:-3323605 | Msa0271800:CDS |
TGGACTCAACTGAATCACGT+TGG | 0.630947 | 2_3:-3327468 | Msa0271800:CDS |
TGGTTACAAAGATGTTCGAA+AGG | 0.631161 | 2_3:-3320992 | Msa0271800:CDS |
TTTAGAAGCGAGCACATCAG+AGG | 0.632966 | 2_3:-3320755 | Msa0271800:CDS |
AATCATAGTGATGTTTGTTG+GGG | 0.635808 | 2_3:-3320306 | Msa0271800:three_prime_UTR |
CTTCCTCATTGCTAACATTG+CGG | 0.638578 | 2_3:-3322997 | Msa0271800:CDS |
TGTGCTCGCTTCTAAAACAG+AGG | 0.642931 | 2_3:+3320762 | None:intergenic |
AAATCTATGGCAGAAGAGAG+TGG | 0.647974 | 2_3:-3327517 | Msa0271800:exon |
AGTAAAGTGGGACTTGCAGT+AGG | 0.649750 | 2_3:-3323744 | Msa0271800:CDS |
AAAACCATGCTGATGCTGGT+CGG | 0.649875 | 2_3:-3323175 | Msa0271800:CDS |
GACGCCGATTTGAGATTCAG+AGG | 0.651293 | 2_3:-3327403 | Msa0271800:CDS |
GTCATGGAGATATAAGAGCA+AGG | 0.652606 | 2_3:-3320621 | Msa0271800:CDS |
TCTTGAGAAAGAATTGCAGG+AGG | 0.654437 | 2_3:-3320549 | Msa0271800:CDS |
TTGAGAAAGAATTGCAGGAG+GGG | 0.655752 | 2_3:-3320547 | Msa0271800:CDS |
GGATGACGATATTGATTCAG+AGG | 0.660485 | 2_3:-3320878 | Msa0271800:CDS |
TGGAAACCACAGTGTGATAG+CGG | 0.660769 | 2_3:-3320426 | Msa0271800:three_prime_UTR |
AGGCCCGACCAGCATCAGCA+TGG | 0.666480 | 2_3:+3323171 | None:intergenic |
CTGTTCAGCATCAAACAACA+GGG | 0.675419 | 2_3:+3320708 | None:intergenic |
GAGAGTGGTGATGAAATCAA+CGG | 0.675671 | 2_3:-3327502 | Msa0271800:CDS |
GTGCCGCAATGTTAGCAATG+AGG | 0.677050 | 2_3:+3322994 | None:intergenic |
CCATATAAGAAGCATAACAA+GGG | 0.690773 | 2_3:+3322080 | None:intergenic |
GGAGAAACCAGTTTAGGACA+GGG | 0.692910 | 2_3:+3322847 | None:intergenic |
AGTGGTGATGAAATCAACGG+TGG | 0.707852 | 2_3:-3327499 | Msa0271800:CDS |
CTGCTACCGCTATCACACTG+TGG | 0.716941 | 2_3:+3320420 | None:intergenic |
AGAGAAGTTTATACGCCGTG+AGG | 0.724530 | 2_3:-3320929 | Msa0271800:CDS |
AGACACCGAGTATTGTACAG+TGG | 0.737096 | 2_3:-3320145 | Msa0271800:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATTCAATTAACAATTATA+AGG | + | chr2_3:3321293-3321312 | None:intergenic | 10.0% |
!!! | TTAAGTTAAATATTCTAAAA+TGG | - | chr2_3:3322033-3322052 | Msa0271800:CDS | 10.0% |
!!! | AATTTTCACAAGTTTTTTTT+TGG | - | chr2_3:3320665-3320684 | Msa0271800:CDS | 15.0% |
!!! | GGAGTTTTTTTTTTTTTTTT+TGG | - | chr2_3:3320971-3320990 | Msa0271800:CDS | 15.0% |
!! | AATAAGTATGAAATTTAACA+CGG | - | chr2_3:3321354-3321373 | Msa0271800:intron | 15.0% |
!!! | TGATAATTTTATTTAGCTTA+TGG | - | chr2_3:3321602-3321621 | Msa0271800:intron | 15.0% |
!! | ATCATAAAACATTTATATAC+AGG | + | chr2_3:3321750-3321769 | None:intergenic | 15.0% |
!!! | TTATAGTGTTTTTTTCTTTT+TGG | - | chr2_3:3322750-3322769 | Msa0271800:intron | 15.0% |
!!! | AGATAAAAGAATTGATTTAT+AGG | + | chr2_3:3322877-3322896 | None:intergenic | 15.0% |
!!! | TTTTTGTAGAAAAAAAAGAA+AGG | - | chr2_3:3322951-3322970 | Msa0271800:CDS | 15.0% |
!! | AAGAAATAGTAAATATGAAT+GGG | + | chr2_3:3324009-3324028 | None:intergenic | 15.0% |
!!! | TAAATTTTACATATTATCTG+CGG | + | chr2_3:3324907-3324926 | None:intergenic | 15.0% |
!! | AAAAGTAAATATGATTTCAA+TGG | + | chr2_3:3327579-3327598 | None:intergenic | 15.0% |
!!! | AGGTATTTTGTTTTTAGATA+TGG | - | chr2_3:3320522-3320541 | Msa0271800:CDS | 20.0% |
!!! | TTTTTTTTTTGGTAGATAGA+CGG | - | chr2_3:3320982-3321001 | Msa0271800:CDS | 20.0% |
!!! | TATAAGTTGAAATTTCAGAA+TGG | - | chr2_3:3321185-3321204 | Msa0271800:intron | 20.0% |
!! | GTTAATTGAATATTATGAGT+TGG | - | chr2_3:3321300-3321319 | Msa0271800:intron | 20.0% |
!! | TCTTCATAATAATTTATTGC+AGG | - | chr2_3:3321775-3321794 | Msa0271800:CDS | 20.0% |
!! | ATTCAGTGTTATGTTTAAAA+AGG | - | chr2_3:3321883-3321902 | Msa0271800:CDS | 20.0% |
!!! | TGTCTTCATTTTCATTTATA+GGG | + | chr2_3:3321910-3321929 | None:intergenic | 20.0% |
!!! | ATGTCTTCATTTTCATTTAT+AGG | + | chr2_3:3321911-3321930 | None:intergenic | 20.0% |
!! | TTCTACAAAAAAATTTCTTC+AGG | + | chr2_3:3322942-3322961 | None:intergenic | 20.0% |
!! | AAACAAAACTAAAACATGAA+AGG | + | chr2_3:3323697-3323716 | None:intergenic | 20.0% |
!!! | ATGTTTTAGTTTTGTTTATG+AGG | - | chr2_3:3323700-3323719 | Msa0271800:CDS | 20.0% |
!!! | TGTTTTAGTTTTGTTTATGA+GGG | - | chr2_3:3323701-3323720 | Msa0271800:CDS | 20.0% |
!! | TGATTTATAAGCTTATGATT+TGG | - | chr2_3:3323757-3323776 | Msa0271800:CDS | 20.0% |
!! | GAAGAAATAGTAAATATGAA+TGG | + | chr2_3:3324010-3324029 | None:intergenic | 20.0% |
!!! | ATATTTACTATTTCTTCAAG+AGG | - | chr2_3:3324013-3324032 | Msa0271800:intron | 20.0% |
!!! | GAATTTTAATATAGTTGAAC+TGG | + | chr2_3:3324214-3324233 | None:intergenic | 20.0% |
!! | ATTAAAACAATCATTACCAT+AGG | + | chr2_3:3324872-3324891 | None:intergenic | 20.0% |
!! | TGTTTCTTATAATGTATGTA+TGG | - | chr2_3:3325706-3325725 | Msa0271800:CDS | 20.0% |
!! | ATAATGTATGTATGGAATTA+TGG | - | chr2_3:3325714-3325733 | Msa0271800:CDS | 20.0% |
!!! | GAAATATATGATAACTTTTG+AGG | + | chr2_3:3326001-3326020 | None:intergenic | 20.0% |
!! | TGTATAAGTGTATTAAAAAG+AGG | - | chr2_3:3326068-3326087 | Msa0271800:intron | 20.0% |
!! | GTATAAGTGTATTAAAAAGA+GGG | - | chr2_3:3326069-3326088 | Msa0271800:intron | 20.0% |
!! | TATAAGTGTATTAAAAAGAG+GGG | - | chr2_3:3326070-3326089 | Msa0271800:intron | 20.0% |
!! | AGATAGTTAGAAAATTACTT+TGG | + | chr2_3:3326426-3326445 | None:intergenic | 20.0% |
!!! | AAAGTAATTTTCTAACTATC+TGG | - | chr2_3:3326425-3326444 | Msa0271800:intron | 20.0% |
!! | TGTGTCTAAAAGAAATATTT+AGG | + | chr2_3:3326502-3326521 | None:intergenic | 20.0% |
!! | AAAGGAATATATTATAGCAA+AGG | + | chr2_3:3327527-3327546 | None:intergenic | 20.0% |
!!! | ACTTACTTTTGAATTGAATG+TGG | - | chr2_3:3320467-3320486 | Msa0271800:exon | 25.0% |
! | TCAAATAAGTAAATCCAAAC+AGG | + | chr2_3:3320582-3320601 | None:intergenic | 25.0% |
!!! | ATAAGTTTTGTGAGACTATT+AGG | - | chr2_3:3320616-3320635 | Msa0271800:CDS | 25.0% |
!!! | TAAGTTTTGTGAGACTATTA+GGG | - | chr2_3:3320617-3320636 | Msa0271800:CDS | 25.0% |
! | GACCAAAAAAAGAAATAGAA+AGG | - | chr2_3:3320950-3320969 | Msa0271800:CDS | 25.0% |
!!! | CTCCTTTCTATTTCTTTTTT+TGG | + | chr2_3:3320955-3320974 | None:intergenic | 25.0% |
! | AAATACCAAAATTGTTAGGT+TGG | + | chr2_3:3321066-3321085 | None:intergenic | 25.0% |
! | GAGAGATAATTTACAATGAT+TGG | - | chr2_3:3321397-3321416 | Msa0271800:intron | 25.0% |
! | ATAATTTACAATGATTGGTG+AGG | - | chr2_3:3321402-3321421 | Msa0271800:intron | 25.0% |
! | TGTAAAATTTGTGAGAGATA+AGG | + | chr2_3:3321484-3321503 | None:intergenic | 25.0% |
!! | TGTTCAACTTCTATTACTTT+TGG | - | chr2_3:3321575-3321594 | Msa0271800:intron | 25.0% |
! | ATAACACTGAATGTATACAA+TGG | + | chr2_3:3321875-3321894 | None:intergenic | 25.0% |
!! | GTCTTCATTTTCATTTATAG+GGG | + | chr2_3:3321909-3321928 | None:intergenic | 25.0% |
! | AATGAAAATGAAGACATTCT+TGG | - | chr2_3:3321914-3321933 | Msa0271800:CDS | 25.0% |
! | TACTTTAATCTTGATTCCTT+TGG | - | chr2_3:3321958-3321977 | Msa0271800:CDS | 25.0% |
! | TTGAAATCATCTAGATATTG+AGG | + | chr2_3:3322317-3322336 | None:intergenic | 25.0% |
! | TATCATTACAGGTATGTTAT+GGG | + | chr2_3:3322676-3322695 | None:intergenic | 25.0% |
! | ATATCATTACAGGTATGTTA+TGG | + | chr2_3:3322677-3322696 | None:intergenic | 25.0% |
! | ATCTAACAAGATATCATTAC+AGG | + | chr2_3:3322687-3322706 | None:intergenic | 25.0% |
!! | ACACTATAACAGTTTTCAAA+TGG | + | chr2_3:3322739-3322758 | None:intergenic | 25.0% |
!! | AATTCTTTTATCTGTAACCT+GGG | - | chr2_3:3322884-3322903 | Msa0271800:CDS | 25.0% |
! | CATGCACACTTAAAAAATAT+GGG | + | chr2_3:3323198-3323217 | None:intergenic | 25.0% |
! | ACATGCACACTTAAAAAATA+TGG | + | chr2_3:3323199-3323218 | None:intergenic | 25.0% |
! | AGGAATGAATAAAGAATTCA+AGG | - | chr2_3:3323276-3323295 | Msa0271800:intron | 25.0% |
! | TATAGTAAATACTGTAGAAC+TGG | + | chr2_3:3323568-3323587 | None:intergenic | 25.0% |
! | TAGTGAGAAATTGTGTATAT+GGG | + | chr2_3:3323620-3323639 | None:intergenic | 25.0% |
! | ATAGTGAGAAATTGTGTATA+TGG | + | chr2_3:3323621-3323640 | None:intergenic | 25.0% |
!!! | GTTTTAGTTTTGTTTATGAG+GGG | - | chr2_3:3323702-3323721 | Msa0271800:CDS | 25.0% |
!!! | TTTTAGTTTTGTTTATGAGG+GGG | - | chr2_3:3323703-3323722 | Msa0271800:CDS | 25.0% |
! | TTCATCTGCATAGTTAAAAA+TGG | + | chr2_3:3323812-3323831 | None:intergenic | 25.0% |
! | TGATATTGTCAATACTTACT+CGG | + | chr2_3:3324505-3324524 | None:intergenic | 25.0% |
! | CATATCTTACTGTAATTATG+TGG | - | chr2_3:3325033-3325052 | Msa0271800:intron | 25.0% |
!!! | CAGTTTTTCAGGAAAAAAAA+GGG | + | chr2_3:3325184-3325203 | None:intergenic | 25.0% |
!!! | CTATCATTTTTTTCCACATT+TGG | - | chr2_3:3325274-3325293 | Msa0271800:intron | 25.0% |
!!! | ATTTTTTTCCACATTTGGTA+TGG | - | chr2_3:3325279-3325298 | Msa0271800:intron | 25.0% |
! | CTTTATAATGAATTGGTCAA+AGG | - | chr2_3:3325843-3325862 | Msa0271800:intron | 25.0% |
! | AAAATGCAAATAAAAGGATC+TGG | + | chr2_3:3326041-3326060 | None:intergenic | 25.0% |
!!! | GATCCTTTTATTTGCATTTT+CGG | - | chr2_3:3326041-3326060 | Msa0271800:intron | 25.0% |
!! | TTAACCTTCTAAGAGTTAAA+TGG | - | chr2_3:3326123-3326142 | Msa0271800:intron | 25.0% |
! | TAATCCATTTAACTCTTAGA+AGG | + | chr2_3:3326130-3326149 | None:intergenic | 25.0% |
! | TGAAAGAGAACAAATTTGTA+GGG | - | chr2_3:3326194-3326213 | Msa0271800:intron | 25.0% |
! | CTATTAACTCTCTTGAAAAA+GGG | + | chr2_3:3326293-3326312 | None:intergenic | 25.0% |
! | ACTATTAACTCTCTTGAAAA+AGG | + | chr2_3:3326294-3326313 | None:intergenic | 25.0% |
! | GACATCTGAATTGATATAAT+AGG | + | chr2_3:3326324-3326343 | None:intergenic | 25.0% |
! | GTTAACTTAAATAGTAAGAG+AGG | + | chr2_3:3326368-3326387 | None:intergenic | 25.0% |
! | TTCATGTGAATATCACTTTA+AGG | - | chr2_3:3326536-3326555 | Msa0271800:intron | 25.0% |
! | TCATGTGAATATCACTTTAA+GGG | - | chr2_3:3326537-3326556 | Msa0271800:intron | 25.0% |
!! | ACTCCATTATAAAACCTTTT+GGG | + | chr2_3:3327245-3327264 | None:intergenic | 25.0% |
! | AAATCATAGTGATGTTTGTT+GGG | - | chr2_3:3327329-3327348 | Msa0271800:CDS | 25.0% |
! | AGTAAATGTTTCATGAAGAA+AGG | + | chr2_3:3327545-3327564 | None:intergenic | 25.0% |
! | TTCTTCATGAAACATTTACT+TGG | - | chr2_3:3327545-3327564 | Msa0271800:five_prime_UTR | 25.0% |
! | ATATGATTTCAATGGAGTTT+CGG | + | chr2_3:3327571-3327590 | None:intergenic | 25.0% |
CTAAGTGTAGTTGAAATCTA+TGG | - | chr2_3:3320106-3320125 | Msa0271800:three_prime_UTR | 30.0% | |
AACCTCATAGTCATTTCTAT+TGG | + | chr2_3:3320384-3320403 | None:intergenic | 30.0% | |
TGCATGATTAAGATAGAGAA+AGG | + | chr2_3:3320410-3320429 | None:intergenic | 30.0% | |
TCTCTATCTTAATCATGCAA+AGG | - | chr2_3:3320411-3320430 | Msa0271800:three_prime_UTR | 30.0% | |
TCTTGTAATGCTTGTTTATG+AGG | - | chr2_3:3320502-3320521 | Msa0271800:CDS | 30.0% | |
TATAAGCTGTTTATCCAAAC+AGG | - | chr2_3:3320830-3320849 | Msa0271800:CDS | 30.0% | |
TGGCAAATACCAAAATTGTT+AGG | + | chr2_3:3321070-3321089 | None:intergenic | 30.0% | |
!! | ACAATTTTGGTATTTGCCAA+TGG | - | chr2_3:3321071-3321090 | Msa0271800:intron | 30.0% |
!! | TGACTTGTTGACAAATAGAT+TGG | - | chr2_3:3321099-3321118 | Msa0271800:intron | 30.0% |
AGTTGGTCATAATTCATAAG+TGG | - | chr2_3:3321317-3321336 | Msa0271800:intron | 30.0% | |
GTGAATCTGAATTCGTTATT+TGG | + | chr2_3:3321452-3321471 | None:intergenic | 30.0% | |
ATTCACTGATGCATTGTATA+AGG | - | chr2_3:3321647-3321666 | Msa0271800:CDS | 30.0% | |
CGTAGGAAAGAAAATTGTAT+TGG | - | chr2_3:3321805-3321824 | Msa0271800:CDS | 30.0% | |
GCATGTGTAAAAATGCTTTA+TGG | + | chr2_3:3322075-3322094 | None:intergenic | 30.0% | |
! | GATATTTGTGGAGACATTTT+AGG | - | chr2_3:3322132-3322151 | Msa0271800:intron | 30.0% |
AGAAAGGCGAGTAATATTAA+AGG | + | chr2_3:3322260-3322279 | None:intergenic | 30.0% | |
TTAGCCTAAAGCTTGATATA+CGG | + | chr2_3:3322429-3322448 | None:intergenic | 30.0% | |
!! | TATATCAAGCTTTAGGCTAA+AGG | - | chr2_3:3322429-3322448 | Msa0271800:intron | 30.0% |
TGAAAGGTCATTGAAAATCA+AGG | - | chr2_3:3322468-3322487 | Msa0271800:intron | 30.0% | |
TATTAATAGCGTCTTCTTCA+GGG | + | chr2_3:3322515-3322534 | None:intergenic | 30.0% | |
ATATTAATAGCGTCTTCTTC+AGG | + | chr2_3:3322516-3322535 | None:intergenic | 30.0% | |
CTATTAATATTTGTGCTTGC+TGG | - | chr2_3:3322526-3322545 | Msa0271800:intron | 30.0% | |
TATCTTGTTAGATGTGTTCA+CGG | - | chr2_3:3322694-3322713 | Msa0271800:intron | 30.0% | |
! | CAATTCTTTTATCTGTAACC+TGG | - | chr2_3:3322883-3322902 | Msa0271800:CDS | 30.0% |
AAGGAGACAGCTTAAAATTT+GGG | + | chr2_3:3322996-3323015 | None:intergenic | 30.0% | |
AAAGGAGACAGCTTAAAATT+TGG | + | chr2_3:3322997-3323016 | None:intergenic | 30.0% | |
TATGCATCCATAACTATTAC+AGG | + | chr2_3:3323074-3323093 | None:intergenic | 30.0% | |
TGTAATAGTTATGGATGCAT+AGG | - | chr2_3:3323073-3323092 | Msa0271800:intron | 30.0% | |
CTTCTAATATATGCTCAACT+GGG | + | chr2_3:3323453-3323472 | None:intergenic | 30.0% | |
CAGTTGAGCATATATTAGAA+GGG | - | chr2_3:3323452-3323471 | Msa0271800:intron | 30.0% | |
AGTTGAGCATATATTAGAAG+GGG | - | chr2_3:3323453-3323472 | Msa0271800:intron | 30.0% | |
!! | TTTTAACTATGCAGATGAAG+TGG | - | chr2_3:3323813-3323832 | Msa0271800:intron | 30.0% |
AACTGGTAAACAAAATATGC+AGG | - | chr2_3:3324083-3324102 | Msa0271800:intron | 30.0% | |
CACAATAAAGAAGTTACTGT+GGG | + | chr2_3:3324152-3324171 | None:intergenic | 30.0% | |
!! | TGACAATATCATTTTTACCC+CGG | - | chr2_3:3324514-3324533 | Msa0271800:intron | 30.0% |
TAATACTATTCTCTGTTTGC+AGG | - | chr2_3:3324598-3324617 | Msa0271800:intron | 30.0% | |
ATTAAACAATCAACTGCACT+TGG | - | chr2_3:3324706-3324725 | Msa0271800:intron | 30.0% | |
!!! | TGTGAATGATTTTAAGACGA+GGG | + | chr2_3:3324738-3324757 | None:intergenic | 30.0% |
CACTCAAAATAAATATGAGC+GGG | + | chr2_3:3325073-3325092 | None:intergenic | 30.0% | |
CCACTCAAAATAAATATGAG+CGG | + | chr2_3:3325074-3325093 | None:intergenic | 30.0% | |
! | AAATCAGGTCTTCTTTTACA+AGG | + | chr2_3:3325119-3325138 | None:intergenic | 30.0% |
GAAAAAAAAGGGCAACAATA+GGG | + | chr2_3:3325173-3325192 | None:intergenic | 30.0% | |
!!! | CCAGTTTTTCAGGAAAAAAA+AGG | + | chr2_3:3325185-3325204 | None:intergenic | 30.0% |
!!! | CCTTTTTTTTCCTGAAAAAC+TGG | - | chr2_3:3325182-3325201 | Msa0271800:CDS | 30.0% |
! | TCAATCTGTGTATGTGTTTT+AGG | - | chr2_3:3325231-3325250 | Msa0271800:CDS | 30.0% |
! | TTTTTCCTTTTTCCACTTTC+AGG | - | chr2_3:3325489-3325508 | Msa0271800:intron | 30.0% |
! | CCATATAAGAAGCATAACAA+GGG | + | chr2_3:3325559-3325578 | None:intergenic | 30.0% |
AGATGGAAGTTGGATAATAT+TGG | - | chr2_3:3325668-3325687 | Msa0271800:CDS | 30.0% | |
AGTCAAGCAAAAATTGTCAA+TGG | - | chr2_3:3325761-3325780 | Msa0271800:CDS | 30.0% | |
GATGCTTACAAATATGATCA+TGG | + | chr2_3:3325919-3325938 | None:intergenic | 30.0% | |
ATATATTTCGTTGTATTGCC+AGG | - | chr2_3:3326012-3326031 | Msa0271800:intron | 30.0% | |
AGACCGAAAATGCAAATAAA+AGG | + | chr2_3:3326047-3326066 | None:intergenic | 30.0% | |
GTGAAAGAGAACAAATTTGT+AGG | - | chr2_3:3326193-3326212 | Msa0271800:intron | 30.0% | |
GAAAGAGAACAAATTTGTAG+GGG | - | chr2_3:3326195-3326214 | Msa0271800:intron | 30.0% | |
TTTGTGGAATAAAAACCCTT+TGG | + | chr2_3:3326264-3326283 | None:intergenic | 30.0% | |
! | AAAGGGTTTTTATTCCACAA+AGG | - | chr2_3:3326263-3326282 | Msa0271800:intron | 30.0% |
! | AAGGGTTTTTATTCCACAAA+GGG | - | chr2_3:3326264-3326283 | Msa0271800:intron | 30.0% |
CATGTGAATATCACTTTAAG+GGG | - | chr2_3:3326538-3326557 | Msa0271800:intron | 30.0% | |
! | TGCTTTTATGTCAACAGATA+TGG | - | chr2_3:3326624-3326643 | Msa0271800:intron | 30.0% |
TCCAAGTAAATTGTTCCATT+GGG | + | chr2_3:3327194-3327213 | None:intergenic | 30.0% | |
TTCCAAGTAAATTGTTCCAT+TGG | + | chr2_3:3327195-3327214 | None:intergenic | 30.0% | |
! | CTCCATTATAAAACCTTTTG+GGG | + | chr2_3:3327244-3327263 | None:intergenic | 30.0% |
! | CACTCCATTATAAAACCTTT+TGG | + | chr2_3:3327246-3327265 | None:intergenic | 30.0% |
GAAATCATAGTGATGTTTGT+TGG | - | chr2_3:3327328-3327347 | Msa0271800:CDS | 30.0% | |
! | AATCATAGTGATGTTTGTTG+GGG | - | chr2_3:3327330-3327349 | Msa0271800:CDS | 30.0% |
TTCAATTCCGTATATGAAGA+TGG | + | chr2_3:3327367-3327386 | None:intergenic | 30.0% | |
GAACAAAAACTCATTCGTAC+TGG | - | chr2_3:3320311-3320330 | Msa0271800:three_prime_UTR | 35.0% | |
!! | ACATCAAATGAATCGATTCG+AGG | + | chr2_3:3320338-3320357 | None:intergenic | 35.0% |
TGCCAATAGAAATGACTATG+AGG | - | chr2_3:3320379-3320398 | Msa0271800:three_prime_UTR | 35.0% | |
GCTTATGTTTGAGCTTACAT+AGG | + | chr2_3:3320786-3320805 | None:intergenic | 35.0% | |
AAATGGCGATATTGTTAGGT+TGG | - | chr2_3:3320869-3320888 | Msa0271800:CDS | 35.0% | |
!! | CTTGTGTTTGAGTTTTCAAG+TGG | + | chr2_3:3321019-3321038 | None:intergenic | 35.0% |
CTTGAAAACTCAAACACAAG+TGG | - | chr2_3:3321019-3321038 | Msa0271800:intron | 35.0% | |
TTTAACACGGTTTAACCTAC+AGG | - | chr2_3:3321367-3321386 | Msa0271800:intron | 35.0% | |
TATCTCTCTTTATTGCCTGT+AGG | + | chr2_3:3321385-3321404 | None:intergenic | 35.0% | |
!! | GAATTCGTTATTTGGTGCAT+TGG | + | chr2_3:3321444-3321463 | None:intergenic | 35.0% |
TACAATGCATCAGTGAATTG+TGG | + | chr2_3:3321645-3321664 | None:intergenic | 35.0% | |
ACTGAATGTATACAATGGAC+TGG | + | chr2_3:3321870-3321889 | None:intergenic | 35.0% | |
TATACCTTCCCCATTATCAT+TGG | + | chr2_3:3322011-3322030 | None:intergenic | 35.0% | |
! | AATATCTTCATGAGGCACTA+TGG | + | chr2_3:3322118-3322137 | None:intergenic | 35.0% |
TCTCCACAAATATCTTCATG+AGG | + | chr2_3:3322126-3322145 | None:intergenic | 35.0% | |
TAGGAACCAACTTAAGAAAG+TGG | - | chr2_3:3322151-3322170 | Msa0271800:intron | 35.0% | |
!! | ATAGTGCCACTTTCTTAAGT+TGG | + | chr2_3:3322160-3322179 | None:intergenic | 35.0% |
AACTTAAGAAAGTGGCACTA+TGG | - | chr2_3:3322159-3322178 | Msa0271800:intron | 35.0% | |
GCACTATGGTGTGATTTAAT+TGG | - | chr2_3:3322173-3322192 | Msa0271800:intron | 35.0% | |
!! | GATTCAGTTTTATGCACTGA+CGG | + | chr2_3:3322223-3322242 | None:intergenic | 35.0% |
TAGCCTAAAGCTTGATATAC+GGG | + | chr2_3:3322428-3322447 | None:intergenic | 35.0% | |
AGTTAATAACCTGACATTGC+TGG | + | chr2_3:3322586-3322605 | None:intergenic | 35.0% | |
AAATTTCTTCAGACTTGCCT+TGG | - | chr2_3:3322631-3322650 | Msa0271800:intron | 35.0% | |
TCATTTCAAACACATGACCA+AGG | + | chr2_3:3322651-3322670 | None:intergenic | 35.0% | |
!! | TCTGTTGGTGGTTTAAAAGT+TGG | - | chr2_3:3322819-3322838 | Msa0271800:CDS | 35.0% |
!! | CTGTTGGTGGTTTAAAAGTT+GGG | - | chr2_3:3322820-3322839 | Msa0271800:CDS | 35.0% |
AAGGCCTTTCATTACAGAAA+AGG | - | chr2_3:3322970-3322989 | Msa0271800:CDS | 35.0% | |
! | CAGATCTTTGCATCTAAAGT+TGG | + | chr2_3:3323121-3323140 | None:intergenic | 35.0% |
CAACTTTAGATGCAAAGATC+TGG | - | chr2_3:3323119-3323138 | Msa0271800:intron | 35.0% | |
CTAGATGTCAGAAAAGACTA+AGG | - | chr2_3:3323302-3323321 | Msa0271800:intron | 35.0% | |
TCACAAGACAGTGGATAAAT+TGG | - | chr2_3:3323382-3323401 | Msa0271800:CDS | 35.0% | |
CACAAGACAGTGGATAAATT+GGG | - | chr2_3:3323383-3323402 | Msa0271800:CDS | 35.0% | |
! | CAAGTTTGGCACCAATTTTA+TGG | - | chr2_3:3323406-3323425 | Msa0271800:intron | 35.0% |
CCTTCTAATATATGCTCAAC+TGG | + | chr2_3:3323454-3323473 | None:intergenic | 35.0% | |
CCAGTTGAGCATATATTAGA+AGG | - | chr2_3:3323451-3323470 | Msa0271800:intron | 35.0% | |
! | TTTGTGTTACTGCAACTATG+AGG | - | chr2_3:3323479-3323498 | Msa0271800:intron | 35.0% |
ATACTGTAGAACTGGAGTTT+AGG | + | chr2_3:3323560-3323579 | None:intergenic | 35.0% | |
!! | ATTGACTTGGTTTGAGAGAA+TGG | - | chr2_3:3323667-3323686 | Msa0271800:CDS | 35.0% |
GTACGCTGAACAAAACAATA+AGG | + | chr2_3:3323858-3323877 | None:intergenic | 35.0% | |
TTGTTCAGCGTACAAAAGTA+TGG | - | chr2_3:3323865-3323884 | Msa0271800:intron | 35.0% | |
AAAGTATGGAACGAGTAAAG+TGG | - | chr2_3:3323879-3323898 | Msa0271800:intron | 35.0% | |
AAGTATGGAACGAGTAAAGT+GGG | - | chr2_3:3323880-3323899 | Msa0271800:intron | 35.0% | |
CAAAACCATATGAACAAAGC+AGG | + | chr2_3:3323919-3323938 | None:intergenic | 35.0% | |
!!! | CATATGGTTTTGTTCTCTTG+CGG | - | chr2_3:3323927-3323946 | Msa0271800:intron | 35.0% |
!!! | ATATGGTTTTGTTCTCTTGC+GGG | - | chr2_3:3323928-3323947 | Msa0271800:intron | 35.0% |
!! | AATATGACAGAAGTGTCTTG+AGG | - | chr2_3:3323974-3323993 | Msa0271800:intron | 35.0% |
!! | ATATGACAGAAGTGTCTTGA+GGG | - | chr2_3:3323975-3323994 | Msa0271800:intron | 35.0% |
ACTAAAGCATGGTATTCTCT+TGG | - | chr2_3:3324042-3324061 | Msa0271800:intron | 35.0% | |
CTAAAGCATGGTATTCTCTT+GGG | - | chr2_3:3324043-3324062 | Msa0271800:intron | 35.0% | |
TAAAGCATGGTATTCTCTTG+GGG | - | chr2_3:3324044-3324063 | Msa0271800:intron | 35.0% | |
CCACAATAAAGAAGTTACTG+TGG | + | chr2_3:3324153-3324172 | None:intergenic | 35.0% | |
CCACAGTAACTTCTTTATTG+TGG | - | chr2_3:3324150-3324169 | Msa0271800:intron | 35.0% | |
GTAACAAAGATCTGCAAACA+TGG | + | chr2_3:3324265-3324284 | None:intergenic | 35.0% | |
TACTAATATGTGACACTCGA+TGG | - | chr2_3:3324355-3324374 | Msa0271800:intron | 35.0% | |
ACTCGGAACAGAAGAATAAA+AGG | + | chr2_3:3324488-3324507 | None:intergenic | 35.0% | |
!! | GACAATATCATTTTTACCCC+GGG | - | chr2_3:3324515-3324534 | Msa0271800:intron | 35.0% |
!!! | GTGTGAATGATTTTAAGACG+AGG | + | chr2_3:3324739-3324758 | None:intergenic | 35.0% |
! | AGATCTGGCCCATAAATTTT+CGG | + | chr2_3:3324765-3324784 | None:intergenic | 35.0% |
ATATCCAGCATAGATGAGAT+TGG | - | chr2_3:3324841-3324860 | Msa0271800:intron | 35.0% | |
ATTTCCAATCTCATCTATGC+TGG | + | chr2_3:3324848-3324867 | None:intergenic | 35.0% | |
TGCTTTGTGAAATCGAAACT+TGG | - | chr2_3:3324943-3324962 | Msa0271800:intron | 35.0% | |
TCAAAATAAATATGAGCGGG+AGG | + | chr2_3:3325070-3325089 | None:intergenic | 35.0% | |
!!! | CCGCTCATATTTATTTTGAG+TGG | - | chr2_3:3325071-3325090 | Msa0271800:CDS | 35.0% |
TGGAGAATCAATGATACAAC+CGG | - | chr2_3:3325091-3325110 | Msa0271800:CDS | 35.0% | |
TGGAATTCTCTAAGCAAATC+AGG | + | chr2_3:3325134-3325153 | None:intergenic | 35.0% | |
GGAAAAAAAAGGGCAACAAT+AGG | + | chr2_3:3325174-3325193 | None:intergenic | 35.0% | |
CACATACACAGATTGACAAT+TGG | + | chr2_3:3325227-3325246 | None:intergenic | 35.0% | |
!! | ATCTGTGTATGTGTTTTAGG+AGG | - | chr2_3:3325234-3325253 | Msa0271800:CDS | 35.0% |
!!! | TGTTTTAGGAGGTAGTAGTT+TGG | - | chr2_3:3325245-3325264 | Msa0271800:CDS | 35.0% |
AAATGTGACCATACCAAATG+TGG | + | chr2_3:3325290-3325309 | None:intergenic | 35.0% | |
!!! | TTTAGCTTTCGTTGGCTTTT+GGG | - | chr2_3:3325398-3325417 | Msa0271800:intron | 35.0% |
AGTGGAAAAAGGAAAAAGTG+TGG | + | chr2_3:3325486-3325505 | None:intergenic | 35.0% | |
CAATTCCTGAAAGTGGAAAA+AGG | + | chr2_3:3325497-3325516 | None:intergenic | 35.0% | |
! | CCCTTGTTATGCTTCTTATA+TGG | - | chr2_3:3325556-3325575 | Msa0271800:intron | 35.0% |
! | GCCATATAAGAAGCATAACA+AGG | + | chr2_3:3325560-3325579 | None:intergenic | 35.0% |
! | CATCATAGTGTTGTGTTTTG+CGG | - | chr2_3:3325590-3325609 | Msa0271800:intron | 35.0% |
! | TGTTTTGCGGTATTCTTCTT+GGG | - | chr2_3:3325603-3325622 | Msa0271800:intron | 35.0% |
! | CTTTCTTTTCATCTGTTCTG+TGG | - | chr2_3:3325637-3325656 | Msa0271800:intron | 35.0% |
ATGGATTTGATGCGAGAATT+AGG | - | chr2_3:3325780-3325799 | Msa0271800:CDS | 35.0% | |
TGGATTTGATGCGAGAATTA+GGG | - | chr2_3:3325781-3325800 | Msa0271800:CDS | 35.0% | |
GAGAATTAGGGTCTAATCTT+GGG | - | chr2_3:3325793-3325812 | Msa0271800:CDS | 35.0% | |
! | CGGGTTGCTTTATAATGAAT+TGG | - | chr2_3:3325836-3325855 | Msa0271800:CDS | 35.0% |
AAAGGAATACCAGCAATTCT+TGG | - | chr2_3:3325861-3325880 | Msa0271800:intron | 35.0% | |
AGAAAATGTCCAAGAATTGC+TGG | + | chr2_3:3325873-3325892 | None:intergenic | 35.0% | |
TGTAAGCATCAAGTATGTTC+CGG | - | chr2_3:3325929-3325948 | Msa0271800:intron | 35.0% | |
AAAAGGAACCTTTCACTTTG+AGG | + | chr2_3:3325966-3325985 | None:intergenic | 35.0% | |
! | AAAGTGAAAGGTTCCTTTTC+CGG | - | chr2_3:3325967-3325986 | Msa0271800:intron | 35.0% |
AATAAAAGGATCTGGTTACC+TGG | + | chr2_3:3326033-3326052 | None:intergenic | 35.0% | |
!! | TTCTCAGCTAATTTGCTTGT+AGG | + | chr2_3:3326168-3326187 | None:intergenic | 35.0% |
ATTCGAAATGTCTGCAGAAA+AGG | - | chr2_3:3326221-3326240 | Msa0271800:intron | 35.0% | |
TTCGAAATGTCTGCAGAAAA+GGG | - | chr2_3:3326222-3326241 | Msa0271800:intron | 35.0% | |
AACGTTAGAGATGCATAACT+GGG | + | chr2_3:3326397-3326416 | None:intergenic | 35.0% | |
AAACGTTAGAGATGCATAAC+TGG | + | chr2_3:3326398-3326417 | None:intergenic | 35.0% | |
ATATTTAGGAGCTCCATTTC+TGG | + | chr2_3:3326488-3326507 | None:intergenic | 35.0% | |
TGGTTACAAAGATGTTCGAA+AGG | - | chr2_3:3326644-3326663 | Msa0271800:intron | 35.0% | |
AGTGAATAAACGCTTCCATT+GGG | + | chr2_3:3326816-3326835 | None:intergenic | 35.0% | |
AAGTGAATAAACGCTTCCAT+TGG | + | chr2_3:3326817-3326836 | None:intergenic | 35.0% | |
!! | AATGGAAGCGTTTATTCACT+TGG | - | chr2_3:3326816-3326835 | Msa0271800:intron | 35.0% |
!! | ATGGAAGCGTTTATTCACTT+GGG | - | chr2_3:3326817-3326836 | Msa0271800:intron | 35.0% |
! | GGAGTTGTCTTTTATTCACA+AGG | - | chr2_3:3326962-3326981 | Msa0271800:intron | 35.0% |
ATTCACAAGGCTAAAGAATC+TGG | - | chr2_3:3326975-3326994 | Msa0271800:intron | 35.0% | |
! | TCTGGAGTAGTTTATCTTCT+TGG | - | chr2_3:3326993-3327012 | Msa0271800:intron | 35.0% |
GTAGTTTATCTTCTTGGTCA+TGG | - | chr2_3:3326999-3327018 | Msa0271800:intron | 35.0% | |
! | AAACCAATTTTACTGCCCAA+TGG | - | chr2_3:3327176-3327195 | Msa0271800:intron | 35.0% |
!! | GTCCCCAAAAGGTTTTATAA+TGG | - | chr2_3:3327239-3327258 | Msa0271800:intron | 35.0% |
AAATCTATGGCAGAAGAGAG+TGG | - | chr2_3:3320119-3320138 | Msa0271800:three_prime_UTR | 40.0% | |
! | GAGAGTGGTGATGAAATCAA+CGG | - | chr2_3:3320134-3320153 | Msa0271800:three_prime_UTR | 40.0% |
! | AATCAACGGTGGATTCTCAA+TGG | - | chr2_3:3320148-3320167 | Msa0271800:three_prime_UTR | 40.0% |
TAGTCATTTCTATTGGCACC+AGG | + | chr2_3:3320377-3320396 | None:intergenic | 40.0% | |
AGAGTGAGTGAAGTTGTACT+TGG | - | chr2_3:3320555-3320574 | Msa0271800:CDS | 40.0% | |
GAGTGAGTGAAGTTGTACTT+GGG | - | chr2_3:3320556-3320575 | Msa0271800:CDS | 40.0% | |
TGGCAAATGGCGATATTGTT+AGG | - | chr2_3:3320865-3320884 | Msa0271800:CDS | 40.0% | |
GAAAACTCAAACACAAGTGG+AGG | - | chr2_3:3321022-3321041 | Msa0271800:intron | 40.0% | |
TCAACAAGTCATAGCTCCAT+TGG | + | chr2_3:3321090-3321109 | None:intergenic | 40.0% | |
! | GAGCAGCACCAGATTTTAAA+GGG | + | chr2_3:3321683-3321702 | None:intergenic | 40.0% |
! | TGAGCAGCACCAGATTTTAA+AGG | + | chr2_3:3321684-3321703 | None:intergenic | 40.0% |
TTATTGCAGGATATCAGCGT+AGG | - | chr2_3:3321788-3321807 | Msa0271800:CDS | 40.0% | |
!!! | GTATTGGCTTTTCAGACTCT+TGG | - | chr2_3:3321821-3321840 | Msa0271800:CDS | 40.0% |
TCCTTTGGTGAAGTATATCC+TGG | - | chr2_3:3321973-3321992 | Msa0271800:CDS | 40.0% | |
ACCAGGATATACTTCACCAA+AGG | + | chr2_3:3321977-3321996 | None:intergenic | 40.0% | |
AGTATATCCTGGTTGTTCTG+TGG | - | chr2_3:3321984-3322003 | Msa0271800:CDS | 40.0% | |
GTATATCCTGGTTGTTCTGT+GGG | - | chr2_3:3321985-3322004 | Msa0271800:CDS | 40.0% | |
TTCTGTGGGCCAATGATAAT+GGG | - | chr2_3:3321999-3322018 | Msa0271800:CDS | 40.0% | |
!! | TATGGTGGGTGTGATTTGAT+TGG | + | chr2_3:3322100-3322119 | None:intergenic | 40.0% |
GTGCCTCATGAAGATATTTG+TGG | - | chr2_3:3322120-3322139 | Msa0271800:CDS | 40.0% | |
TATGACAGTCAGAGAGAGAA+AGG | + | chr2_3:3322276-3322295 | None:intergenic | 40.0% | |
GATATTGAGGACGTAACTCT+TGG | + | chr2_3:3322304-3322323 | None:intergenic | 40.0% | |
AGATGATTTCAAACCACTGC+AGG | - | chr2_3:3322325-3322344 | Msa0271800:intron | 40.0% | |
! | ACGACAAATCAAGGAGTACA+AGG | + | chr2_3:3322362-3322381 | None:intergenic | 40.0% |
CTTAGCATGACGACAAATCA+AGG | + | chr2_3:3322371-3322390 | None:intergenic | 40.0% | |
!! | CTTGATTTGTCGTCATGCTA+AGG | - | chr2_3:3322369-3322388 | Msa0271800:intron | 40.0% |
ATGCCCGTATATCAAGCTTT+AGG | - | chr2_3:3322422-3322441 | Msa0271800:intron | 40.0% | |
ACTTCTATGGTGATCGCTAA+CGG | - | chr2_3:3322550-3322569 | Msa0271800:intron | 40.0% | |
! | TGGGCCTTTTCTGTAATGAA+AGG | + | chr2_3:3322977-3322996 | None:intergenic | 40.0% |
! | CCTAAAGCAAATTCTGAGAG+GGG | + | chr2_3:3323026-3323045 | None:intergenic | 40.0% |
! | GCCTAAAGCAAATTCTGAGA+GGG | + | chr2_3:3323027-3323046 | None:intergenic | 40.0% |
AACGCTGCCTGTAATAGTTA+TGG | - | chr2_3:3323064-3323083 | Msa0271800:intron | 40.0% | |
!! | GCATCTAAAGTTGGTCTTGA+TGG | + | chr2_3:3323112-3323131 | None:intergenic | 40.0% |
! | CCACAGAAGTTGTTGATTGT+TGG | + | chr2_3:3323151-3323170 | None:intergenic | 40.0% |
CCAACAATCAACAACTTCTG+TGG | - | chr2_3:3323148-3323167 | Msa0271800:intron | 40.0% | |
ACAATCAACAACTTCTGTGG+AGG | - | chr2_3:3323151-3323170 | Msa0271800:intron | 40.0% | |
TGCAATATCCTGTCATTACC+CGG | - | chr2_3:3323225-3323244 | Msa0271800:CDS | 40.0% | |
AAAACTCCACATGCAGTCTT+AGG | - | chr2_3:3323256-3323275 | Msa0271800:intron | 40.0% | |
TTCATTCCTAAGACTGCATG+TGG | + | chr2_3:3323265-3323284 | None:intergenic | 40.0% | |
GATGTCAGAAAAGACTAAGG+AGG | - | chr2_3:3323305-3323324 | Msa0271800:intron | 40.0% | |
GTGGATAAATTGGGCAAGTT+TGG | - | chr2_3:3323392-3323411 | Msa0271800:intron | 40.0% | |
! | CTTGCAGAGTGCCATAAAAT+TGG | + | chr2_3:3323420-3323439 | None:intergenic | 40.0% |
! | TGGAGTTTAGGTTCGATGAT+TGG | + | chr2_3:3323548-3323567 | None:intergenic | 40.0% |
! | GCTACTGAAGTCTATTGACT+TGG | - | chr2_3:3323654-3323673 | Msa0271800:CDS | 40.0% |
GCTGAACAAAACAATAAGGC+AGG | + | chr2_3:3323854-3323873 | None:intergenic | 40.0% | |
! | TAGGACCTGCTTTGTTCATA+TGG | - | chr2_3:3323911-3323930 | Msa0271800:intron | 40.0% |
! | TTTTGTTCTCTTGCGGGTAT+CGG | - | chr2_3:3323934-3323953 | Msa0271800:intron | 40.0% |
AGAGGAACTCAACTAAAGCA+TGG | - | chr2_3:3324031-3324050 | Msa0271800:intron | 40.0% | |
AAAGCATGGTATTCTCTTGG+GGG | - | chr2_3:3324045-3324064 | Msa0271800:intron | 40.0% | |
TTCTTACTGAACTGTGTTGC+AGG | - | chr2_3:3324231-3324250 | Msa0271800:intron | 40.0% | |
AAATAACCCAATAGCAGGCA+CGG | + | chr2_3:3324418-3324437 | None:intergenic | 40.0% | |
TGCCTGCTATTGGGTTATTT+GGG | - | chr2_3:3324418-3324437 | Msa0271800:intron | 40.0% | |
! | CATCAGCATGGTTTTCCATA+AGG | + | chr2_3:3324456-3324475 | None:intergenic | 40.0% |
!!! | TGCGTTAGCTTTCTTTTCAG+TGG | - | chr2_3:3324545-3324564 | Msa0271800:intron | 40.0% |
!!! | GCGTTAGCTTTCTTTTCAGT+GGG | - | chr2_3:3324546-3324565 | Msa0271800:intron | 40.0% |
TACTATTCTCTGTTTGCAGG+TGG | - | chr2_3:3324601-3324620 | Msa0271800:intron | 40.0% | |
ATGTTAGCAATGAGGAAGGT+TGG | + | chr2_3:3324637-3324656 | None:intergenic | 40.0% | |
CTTCCTCATTGCTAACATTG+CGG | - | chr2_3:3324639-3324658 | Msa0271800:intron | 40.0% | |
TCACACCTCCCGAAAATTTA+TGG | - | chr2_3:3324753-3324772 | Msa0271800:intron | 40.0% | |
CACACCTCCCGAAAATTTAT+GGG | - | chr2_3:3324754-3324773 | Msa0271800:intron | 40.0% | |
! | GATCTGGCCCATAAATTTTC+GGG | + | chr2_3:3324764-3324783 | None:intergenic | 40.0% |
TTAGGACAGGGATATAGATC+TGG | + | chr2_3:3324780-3324799 | None:intergenic | 40.0% | |
TCTATATCCCTGTCCTAAAC+TGG | - | chr2_3:3324782-3324801 | Msa0271800:intron | 40.0% | |
GATGAGATTGGAAATGCCTA+TGG | - | chr2_3:3324853-3324872 | Msa0271800:intron | 40.0% | |
AAGGGCAACAATAGGGTTTA+GGG | + | chr2_3:3325166-3325185 | None:intergenic | 40.0% | |
AAAGGGCAACAATAGGGTTT+AGG | + | chr2_3:3325167-3325186 | None:intergenic | 40.0% | |
GACGCAAATTATTGACGATC+AGG | + | chr2_3:3325355-3325374 | None:intergenic | 40.0% | |
TTTGCGTCTGCAATCTAGAA+CGG | - | chr2_3:3325367-3325386 | Msa0271800:intron | 40.0% | |
!!! | GTTTAGCTTTCGTTGGCTTT+TGG | - | chr2_3:3325397-3325416 | Msa0271800:intron | 40.0% |
AACAAGGGTTACTAAGACAG+TGG | + | chr2_3:3325544-3325563 | None:intergenic | 40.0% | |
! | GTGTTTTGCGGTATTCTTCT+TGG | - | chr2_3:3325602-3325621 | Msa0271800:intron | 40.0% |
CGAGAATTAGGGTCTAATCT+TGG | - | chr2_3:3325792-3325811 | Msa0271800:CDS | 40.0% | |
TTATAAAGCAACCCGATTCC+AGG | + | chr2_3:3325831-3325850 | None:intergenic | 40.0% | |
ATGATCATGGAGTGAATTGC+AGG | + | chr2_3:3325906-3325925 | None:intergenic | 40.0% | |
!! | GGATGTTTACTTTTACACCC+TGG | - | chr2_3:3326091-3326110 | Msa0271800:intron | 40.0% |
AAATGTCTGCAGAAAAGGGA+GGG | - | chr2_3:3326226-3326245 | Msa0271800:intron | 40.0% | |
TGAAAAAGGGAAACCCTTTG+TGG | + | chr2_3:3326280-3326299 | None:intergenic | 40.0% | |
GAGAGGAGTAGAAGACTATT+TGG | + | chr2_3:3326351-3326370 | None:intergenic | 40.0% | |
TTAGAGATGCATAACTGGGT+TGG | + | chr2_3:3326393-3326412 | None:intergenic | 40.0% | |
!! | GGATGACGATATTGATTCAG+AGG | - | chr2_3:3326758-3326777 | Msa0271800:intron | 40.0% |
TGAATAAACGCTTCCATTGG+GGG | + | chr2_3:3326814-3326833 | None:intergenic | 40.0% | |
GTGAATAAACGCTTCCATTG+GGG | + | chr2_3:3326815-3326834 | None:intergenic | 40.0% | |
!! | TGGAAGCGTTTATTCACTTG+GGG | - | chr2_3:3326818-3326837 | Msa0271800:intron | 40.0% |
!!! | TCCTCTTCTTGCTGATTTTC+AGG | - | chr2_3:3326842-3326861 | Msa0271800:intron | 40.0% |
TCCTGAAAATCAGCAAGAAG+AGG | + | chr2_3:3326846-3326865 | None:intergenic | 40.0% | |
AGCATCAAACAACAGGGAAT+CGG | + | chr2_3:3326925-3326944 | None:intergenic | 40.0% | |
CTGTTCAGCATCAAACAACA+GGG | + | chr2_3:3326931-3326950 | None:intergenic | 40.0% | |
TCTGTTCAGCATCAAACAAC+AGG | + | chr2_3:3326932-3326951 | None:intergenic | 40.0% | |
TAAAAGACAACTCCCTCTCA+AGG | + | chr2_3:3326956-3326975 | None:intergenic | 40.0% | |
GTCATGGAGATATAAGAGCA+AGG | - | chr2_3:3327015-3327034 | Msa0271800:intron | 40.0% | |
TGGAGATATAAGAGCAAGGA+AGG | - | chr2_3:3327019-3327038 | Msa0271800:intron | 40.0% | |
CCTGCAATTCTTTCTCAAGA+AGG | + | chr2_3:3327087-3327106 | None:intergenic | 40.0% | |
CCTTCTTGAGAAAGAATTGC+AGG | - | chr2_3:3327084-3327103 | Msa0271800:intron | 40.0% | |
TCTTGAGAAAGAATTGCAGG+AGG | - | chr2_3:3327087-3327106 | Msa0271800:intron | 40.0% | |
CTTGAGAAAGAATTGCAGGA+GGG | - | chr2_3:3327088-3327107 | Msa0271800:intron | 40.0% | |
TTGAGAAAGAATTGCAGGAG+GGG | - | chr2_3:3327089-3327108 | Msa0271800:intron | 40.0% | |
ACTTGCATCAGATGTGAATG+AGG | + | chr2_3:3327134-3327153 | None:intergenic | 40.0% | |
GCAAGTTAGCATGACTTACA+TGG | - | chr2_3:3327148-3327167 | Msa0271800:intron | 40.0% | |
GTTCCATTGGGCAGTAAAAT+TGG | + | chr2_3:3327182-3327201 | None:intergenic | 40.0% | |
GCCCAATGGAACAATTTACT+TGG | - | chr2_3:3327190-3327209 | Msa0271800:intron | 40.0% | |
! | CTTGATCCCTTCTAGTTGTT+TGG | - | chr2_3:3327284-3327303 | Msa0271800:CDS | 40.0% |
CCAAGACCAAACAACTAGAA+GGG | + | chr2_3:3327293-3327312 | None:intergenic | 40.0% | |
ACCAAGACCAAACAACTAGA+AGG | + | chr2_3:3327294-3327313 | None:intergenic | 40.0% | |
CGTTGAAGTGGAATTGTTCA+CGG | + | chr2_3:3327454-3327473 | None:intergenic | 40.0% | |
CAATGCCACTGTACAATACT+CGG | + | chr2_3:3327499-3327518 | None:intergenic | 40.0% | |
! | AGTGGTGATGAAATCAACGG+TGG | - | chr2_3:3320137-3320156 | Msa0271800:three_prime_UTR | 45.0% |
TGGACTCAACTGAATCACGT+TGG | - | chr2_3:3320168-3320187 | Msa0271800:three_prime_UTR | 45.0% | |
GGACTCAACTGAATCACGTT+GGG | - | chr2_3:3320169-3320188 | Msa0271800:three_prime_UTR | 45.0% | |
CAGATGCGTCTTCATCTTCA+TGG | + | chr2_3:3320199-3320218 | None:intergenic | 45.0% | |
GCGTCCTCTGAATCTCAAAT+CGG | + | chr2_3:3320240-3320259 | None:intergenic | 45.0% | |
GTTGAAGCTCTTGATGTTCC+TGG | - | chr2_3:3320356-3320375 | Msa0271800:three_prime_UTR | 45.0% | |
AAGTTGTACTTGGGCCTGTT+TGG | - | chr2_3:3320565-3320584 | Msa0271800:CDS | 45.0% | |
GCCATTTGCCAGTTGAGTTA+GGG | + | chr2_3:3320856-3320875 | None:intergenic | 45.0% | |
! | TAGGTTGGACACCTTCATTG+AGG | - | chr2_3:3320884-3320903 | Msa0271800:CDS | 45.0% |
CTGGGTTCAAACCTCAATGA+AGG | + | chr2_3:3320898-3320917 | None:intergenic | 45.0% | |
CTTCATTGAGGTTTGAACCC+AGG | - | chr2_3:3320896-3320915 | Msa0271800:CDS | 45.0% | |
TAAACTCGCACACAACTGTG+AGG | + | chr2_3:3320923-3320942 | None:intergenic | 45.0% | |
! | GGCGTCCAACCTAACAATTT+TGG | - | chr2_3:3321058-3321077 | Msa0271800:intron | 45.0% |
TCCACACAAACACACGTACA+CGG | + | chr2_3:3321269-3321288 | None:intergenic | 45.0% | |
GCATCAGTGAATTGTGGAGT+AGG | + | chr2_3:3321639-3321658 | None:intergenic | 45.0% | |
!! | TGTGCTCGCCCTTTAAAATC+TGG | - | chr2_3:3321672-3321691 | Msa0271800:CDS | 45.0% |
!! | CAGACTCTTGGTGTTGTCTT+TGG | - | chr2_3:3321833-3321852 | Msa0271800:CDS | 45.0% |
!! | GGTGTTGTCTTTGGTGATGT+TGG | - | chr2_3:3321842-3321861 | Msa0271800:CDS | 45.0% |
GTTCTGTGGGCCAATGATAA+TGG | - | chr2_3:3321998-3322017 | Msa0271800:CDS | 45.0% | |
! | TCTGTGGGCCAATGATAATG+GGG | - | chr2_3:3322000-3322019 | Msa0271800:CDS | 45.0% |
! | TCTTCATGAGGCACTATGGT+GGG | + | chr2_3:3322114-3322133 | None:intergenic | 45.0% |
! | ATCTTCATGAGGCACTATGG+TGG | + | chr2_3:3322115-3322134 | None:intergenic | 45.0% |
TGATTTCAAACCACTGCAGG+TGG | - | chr2_3:3322328-3322347 | Msa0271800:intron | 45.0% | |
ATGGTAGCTGATTGGGAAGA+AGG | + | chr2_3:3322399-3322418 | None:intergenic | 45.0% | |
GCATCTGATGGTAGCTGATT+GGG | + | chr2_3:3322406-3322425 | None:intergenic | 45.0% | |
CTTGATATACGGGCATCTGA+TGG | + | chr2_3:3322418-3322437 | None:intergenic | 45.0% | |
CAATGACCTTTCAAGCTCAG+AGG | + | chr2_3:3322461-3322480 | None:intergenic | 45.0% | |
! | TGTGCTTGCTGGTACTTCTA+TGG | - | chr2_3:3322537-3322556 | Msa0271800:intron | 45.0% |
GTTGTAACACCAGCAATGTC+AGG | - | chr2_3:3322574-3322593 | Msa0271800:intron | 45.0% | |
TAGATGTGTTCACGGACAAC+TGG | - | chr2_3:3322702-3322721 | Msa0271800:intron | 45.0% | |
GACAATACTGCAGCAAGACA+TGG | + | chr2_3:3322798-3322817 | None:intergenic | 45.0% | |
GCTGCAGTATTGTCATCTGT+TGG | - | chr2_3:3322804-3322823 | Msa0271800:CDS | 45.0% | |
GCAGTATTGTCATCTGTTGG+TGG | - | chr2_3:3322807-3322826 | Msa0271800:CDS | 45.0% | |
GGGATAGATTCGATCAAGCA+AGG | - | chr2_3:3322840-3322859 | Msa0271800:CDS | 45.0% | |
! | CTTTTATCTGTAACCTGGGC+TGG | - | chr2_3:3322888-3322907 | Msa0271800:CDS | 45.0% |
! | CCCCTCTCAGAATTTGCTTT+AGG | - | chr2_3:3323023-3323042 | Msa0271800:intron | 45.0% |
GGCCTAAAGCAAATTCTGAG+AGG | + | chr2_3:3323028-3323047 | None:intergenic | 45.0% | |
TTTAGGCCTCGCTCATTGTT+GGG | - | chr2_3:3323040-3323059 | Msa0271800:intron | 45.0% | |
AACAACTTCTGTGGAGGAAG+AGG | - | chr2_3:3323157-3323176 | Msa0271800:CDS | 45.0% | |
GCAATATCCTGTCATTACCC+GGG | - | chr2_3:3323226-3323245 | Msa0271800:CDS | 45.0% | |
CAATATCCTGTCATTACCCG+GGG | - | chr2_3:3323227-3323246 | Msa0271800:CDS | 45.0% | |
!!! | TGTGGAGTTTTTTCCATCCC+CGG | + | chr2_3:3323247-3323266 | None:intergenic | 45.0% |
TAAGGAGGCTTAGCTCGATT+AGG | - | chr2_3:3323320-3323339 | Msa0271800:intron | 45.0% | |
CTTGTGAGTTGTGTCAACAC+AGG | + | chr2_3:3323369-3323388 | None:intergenic | 45.0% | |
TGACACAACTCACAAGACAG+TGG | - | chr2_3:3323373-3323392 | Msa0271800:CDS | 45.0% | |
TTTATGGCACTCTGCAAGAC+TGG | - | chr2_3:3323422-3323441 | Msa0271800:intron | 45.0% | |
TTATGGCACTCTGCAAGACT+GGG | - | chr2_3:3323423-3323442 | Msa0271800:intron | 45.0% | |
TATGAGGATGCGTAGTGAGT+TGG | - | chr2_3:3323495-3323514 | Msa0271800:intron | 45.0% | |
TGTTTATGAGGGGGTTAGAC+AGG | - | chr2_3:3323712-3323731 | Msa0271800:CDS | 45.0% | |
AGTAAAGTGGGACTTGCAGT+AGG | - | chr2_3:3323892-3323911 | Msa0271800:intron | 45.0% | |
TTTGTTCTCTTGCGGGTATC+GGG | - | chr2_3:3323935-3323954 | Msa0271800:intron | 45.0% | |
GAACTGGTTGTGTACAGCAA+TGG | + | chr2_3:3324198-3324217 | None:intergenic | 45.0% | |
! | CTTTTCTGTACGATCAGTGC+AGG | - | chr2_3:3324284-3324303 | Msa0271800:intron | 45.0% |
GTGCCTGCTATTGGGTTATT+TGG | - | chr2_3:3324417-3324436 | Msa0271800:intron | 45.0% | |
GACCCAAATAACCCAATAGC+AGG | + | chr2_3:3324423-3324442 | None:intergenic | 45.0% | |
ATGGAAAACCATGCTGATGC+TGG | - | chr2_3:3324457-3324476 | Msa0271800:intron | 45.0% | |
AAAACCATGCTGATGCTGGT+CGG | - | chr2_3:3324461-3324480 | Msa0271800:intron | 45.0% | |
AAGCTAACGCAAAGACAACC+CGG | + | chr2_3:3324536-3324555 | None:intergenic | 45.0% | |
! | TGTTTGCAGGTGGTGCATTT+TGG | - | chr2_3:3324611-3324630 | Msa0271800:intron | 45.0% |
CGCAATGTTAGCAATGAGGA+AGG | + | chr2_3:3324641-3324660 | None:intergenic | 45.0% | |
! | GGAGAAACCAGTTTAGGACA+GGG | + | chr2_3:3324792-3324811 | None:intergenic | 45.0% |
! | AGGAGAAACCAGTTTAGGAC+AGG | + | chr2_3:3324793-3324812 | None:intergenic | 45.0% |
! | TGTCCTAAACTGGTTTCTCC+TGG | - | chr2_3:3324792-3324811 | Msa0271800:intron | 45.0% |
! | GGTCTTCTTTTACAAGGCTC+CGG | + | chr2_3:3325113-3325132 | None:intergenic | 45.0% |
! | TGAGCTACAGCCAGTTTTTC+AGG | + | chr2_3:3325195-3325214 | None:intergenic | 45.0% |
AGGAGGTAGTAGTTTGGCTA+TGG | - | chr2_3:3325251-3325270 | Msa0271800:intron | 45.0% | |
!! | AGGGAGAGTTTAGCTTTCGT+TGG | - | chr2_3:3325390-3325409 | Msa0271800:intron | 45.0% |
AGCTCAGCAATTCCTGAAAG+TGG | + | chr2_3:3325504-3325523 | None:intergenic | 45.0% | |
ACTTTCAGGAATTGCTGAGC+TGG | - | chr2_3:3325503-3325522 | Msa0271800:intron | 45.0% | |
CTTTCAGGAATTGCTGAGCT+GGG | - | chr2_3:3325504-3325523 | Msa0271800:intron | 45.0% | |
TTTCAGGAATTGCTGAGCTG+GGG | - | chr2_3:3325505-3325524 | Msa0271800:intron | 45.0% | |
TGCGGTATTCTTCTTGGGAT+TGG | - | chr2_3:3325608-3325627 | Msa0271800:intron | 45.0% | |
ACAATACGTGCTCCTGGAAT+CGG | - | chr2_3:3325816-3325835 | Msa0271800:CDS | 45.0% | |
! | ACTTTTACACCCTGGCAAAG+TGG | - | chr2_3:3326099-3326118 | Msa0271800:intron | 45.0% |
! | AAGGTTAAGCCACTTTGCCA+GGG | + | chr2_3:3326111-3326130 | None:intergenic | 45.0% |
GAAATGTCTGCAGAAAAGGG+AGG | - | chr2_3:3326225-3326244 | Msa0271800:intron | 45.0% | |
AGGGAAGTCTCTCTTTCCAA+AGG | - | chr2_3:3326245-3326264 | Msa0271800:intron | 45.0% | |
GGGAAGTCTCTCTTTCCAAA+GGG | - | chr2_3:3326246-3326265 | Msa0271800:intron | 45.0% | |
!! | AGCCGCTTTCATTTTTGTCC+TGG | - | chr2_3:3326456-3326475 | Msa0271800:intron | 45.0% |
CGCCAGGACAAAAATGAAAG+CGG | + | chr2_3:3326461-3326480 | None:intergenic | 45.0% | |
CACGGCGTATAAACTTCTCT+AGG | + | chr2_3:3326707-3326726 | None:intergenic | 45.0% | |
AGAGAAGTTTATACGCCGTG+AGG | - | chr2_3:3326707-3326726 | Msa0271800:intron | 45.0% | |
GAGATCACTAGAGAGTGATG+TGG | - | chr2_3:3326737-3326756 | Msa0271800:intron | 45.0% | |
! | AGAGTTCTAATTGCCCCCAA+TGG | - | chr2_3:3326798-3326817 | Msa0271800:intron | 45.0% |
!! | TGTGCTCGCTTCTAAAACAG+AGG | + | chr2_3:3326877-3326896 | None:intergenic | 45.0% |
TTTAGAAGCGAGCACATCAG+AGG | - | chr2_3:3326881-3326900 | Msa0271800:intron | 45.0% | |
ATCAAACAACAGGGAATCGG+AGG | + | chr2_3:3326922-3326941 | None:intergenic | 45.0% | |
TAAGAGCAAGGAAGGACTCT+TGG | - | chr2_3:3327027-3327046 | Msa0271800:intron | 45.0% | |
TGAGAAAGAATTGCAGGAGG+GGG | - | chr2_3:3327090-3327109 | Msa0271800:intron | 45.0% | |
TGGAAACCACAGTGTGATAG+CGG | - | chr2_3:3327210-3327229 | Msa0271800:intron | 45.0% | |
! | CCCTTCTAGTTGTTTGGTCT+TGG | - | chr2_3:3327290-3327309 | Msa0271800:CDS | 45.0% |
GTGGCTGCCATCTTCATATA+CGG | - | chr2_3:3327357-3327376 | Msa0271800:CDS | 45.0% | |
GTTGTACATTCGCGTTGAAG+TGG | + | chr2_3:3327466-3327485 | None:intergenic | 45.0% | |
! | AGACACCGAGTATTGTACAG+TGG | - | chr2_3:3327491-3327510 | Msa0271800:CDS | 45.0% |
!! | GACGCCGATTTGAGATTCAG+AGG | - | chr2_3:3320233-3320252 | Msa0271800:three_prime_UTR | 50.0% |
CAGTTGAGTTAGGGCCTGTT+TGG | + | chr2_3:3320847-3320866 | None:intergenic | 50.0% | |
CAAACAGGCCCTAACTCAAC+TGG | - | chr2_3:3320845-3320864 | Msa0271800:CDS | 50.0% | |
GCCCTAACTCAACTGGCAAA+TGG | - | chr2_3:3320852-3320871 | Msa0271800:CDS | 50.0% | |
CGCCATTTGCCAGTTGAGTT+AGG | + | chr2_3:3320857-3320876 | None:intergenic | 50.0% | |
AAACACAAGTGGAGGATCCC+TGG | - | chr2_3:3321030-3321049 | Msa0271800:intron | 50.0% | |
CACGTACACGGAAAGAACGA+TGG | + | chr2_3:3321257-3321276 | None:intergenic | 50.0% | |
TCCGTGTACGTGTGTTTGTG+TGG | - | chr2_3:3321265-3321284 | Msa0271800:intron | 50.0% | |
!! | TGGGCCAATGATAATGGGGA+AGG | - | chr2_3:3322004-3322023 | Msa0271800:CDS | 50.0% |
GGCATCTGATGGTAGCTGAT+TGG | + | chr2_3:3322407-3322426 | None:intergenic | 50.0% | |
TGCCATCCTCTGAGCTTGAA+AGG | - | chr2_3:3322452-3322471 | Msa0271800:intron | 50.0% | |
GACCTTTCAAGCTCAGAGGA+TGG | + | chr2_3:3322457-3322476 | None:intergenic | 50.0% | |
TGGTCCAAGGCAGTGAAGTT+AGG | - | chr2_3:3322908-3322927 | Msa0271800:CDS | 50.0% | |
GGTCCAAGGCAGTGAAGTTA+GGG | - | chr2_3:3322909-3322928 | Msa0271800:CDS | 50.0% | |
AAGCCCTAACTTCACTGCCT+TGG | + | chr2_3:3322915-3322934 | None:intergenic | 50.0% | |
GGCAGTGAAGTTAGGGCTTT+AGG | - | chr2_3:3322916-3322935 | Msa0271800:CDS | 50.0% | |
!! | TTCTGAGAGGGGCATCTGAA+AGG | + | chr2_3:3323015-3323034 | None:intergenic | 50.0% |
CTTTAGGCCTCGCTCATTGT+TGG | - | chr2_3:3323039-3323058 | Msa0271800:intron | 50.0% | |
TCTGTGGAGGAAGAGGAACA+TGG | - | chr2_3:3323164-3323183 | Msa0271800:CDS | 50.0% | |
!!! | GTGGAGTTTTTTCCATCCCC+GGG | + | chr2_3:3323246-3323265 | None:intergenic | 50.0% |
TATGGCACTCTGCAAGACTG+GGG | - | chr2_3:3323424-3323443 | Msa0271800:intron | 50.0% | |
!! | GATGCGTAGTGAGTTGGTAG+AGG | - | chr2_3:3323501-3323520 | Msa0271800:intron | 50.0% |
TTATGAGGGGGTTAGACAGG+TGG | - | chr2_3:3323715-3323734 | Msa0271800:CDS | 50.0% | |
! | TTGTTCTCTTGCGGGTATCG+GGG | - | chr2_3:3323936-3323955 | Msa0271800:intron | 50.0% |
GGTTGTCTTCTGTGTGCAAC+TGG | - | chr2_3:3324066-3324085 | Msa0271800:intron | 50.0% | |
CTGTACGATCAGTGCAGGTA+AGG | - | chr2_3:3324289-3324308 | Msa0271800:intron | 50.0% | |
! | TGTTTTGCCGTGCCTGCTAT+TGG | - | chr2_3:3324408-3324427 | Msa0271800:intron | 50.0% |
! | GTTTTGCCGTGCCTGCTATT+GGG | - | chr2_3:3324409-3324428 | Msa0271800:intron | 50.0% |
GGGTCAAGCTGCATACCTTA+TGG | - | chr2_3:3324438-3324457 | Msa0271800:intron | 50.0% | |
AAACCATGCTGATGCTGGTC+GGG | - | chr2_3:3324462-3324481 | Msa0271800:intron | 50.0% | |
AGCTAACGCAAAGACAACCC+GGG | + | chr2_3:3324535-3324554 | None:intergenic | 50.0% | |
! | GGGCTGTTTCAGCAAATTGC+AGG | - | chr2_3:3324566-3324585 | Msa0271800:intron | 50.0% |
GTGCCGCAATGTTAGCAATG+AGG | + | chr2_3:3324645-3324664 | None:intergenic | 50.0% | |
!! | TTGCGGCACTGATTGCAAGT+CGG | - | chr2_3:3324656-3324675 | Msa0271800:intron | 50.0% |
!! | CTGGCCCATAAATTTTCGGG+AGG | + | chr2_3:3324761-3324780 | None:intergenic | 50.0% |
CAGCCAGGAGAAACCAGTTT+AGG | + | chr2_3:3324798-3324817 | None:intergenic | 50.0% | |
! | AGGGTTTAGGGTCTCATGCA+TGG | + | chr2_3:3325154-3325173 | None:intergenic | 50.0% |
CTGGCTGTAGCTCAGAACAA+TGG | - | chr2_3:3325201-3325220 | Msa0271800:CDS | 50.0% | |
! | CGTCTGCAATCTAGAACGGA+GGG | - | chr2_3:3325371-3325390 | Msa0271800:intron | 50.0% |
TTCAGGAATTGCTGAGCTGG+GGG | - | chr2_3:3325506-3325525 | Msa0271800:intron | 50.0% | |
TTCATCTGTTCTGTGGAGCG+TGG | - | chr2_3:3325644-3325663 | Msa0271800:intron | 50.0% | |
CAATACGTGCTCCTGGAATC+GGG | - | chr2_3:3325817-3325836 | Msa0271800:CDS | 50.0% | |
CAAGTATGTTCCGGTTCCTG+TGG | - | chr2_3:3325938-3325957 | Msa0271800:intron | 50.0% | |
!! | CTTTCACTTTGAGGCACCAC+AGG | + | chr2_3:3325957-3325976 | None:intergenic | 50.0% |
CTGTGGTGCCTCAAAGTGAA+AGG | - | chr2_3:3325955-3325974 | Msa0271800:intron | 50.0% | |
!!! | AACTTTTGAGGCAGACTCGC+CGG | + | chr2_3:3325989-3326008 | None:intergenic | 50.0% |
! | GAAGGTTAAGCCACTTTGCC+AGG | + | chr2_3:3326112-3326131 | None:intergenic | 50.0% |
! | GAGATGCATAACTGGGTTGG+TGG | + | chr2_3:3326390-3326409 | None:intergenic | 50.0% |
TCAGCAGCTGCTCAAAAGTC+TGG | + | chr2_3:3326677-3326696 | None:intergenic | 50.0% | |
GTGATCTCTCTTGAGCCTCA+CGG | + | chr2_3:3326725-3326744 | None:intergenic | 50.0% | |
ATGCTGAACAGAGCCTTGAG+AGG | - | chr2_3:3326940-3326959 | Msa0271800:intron | 50.0% | |
TGCTGAACAGAGCCTTGAGA+GGG | - | chr2_3:3326941-3326960 | Msa0271800:intron | 50.0% | |
! | TGATGTTTGTTGGGGTTGCG+TGG | - | chr2_3:3327338-3327357 | Msa0271800:CDS | 50.0% |
GCACACAACTGTGAGGTCCT+GGG | + | chr2_3:3320916-3320935 | None:intergenic | 55.0% | |
AGTGGAGGATCCCTGGTTCA+CGG | - | chr2_3:3321037-3321056 | Msa0271800:intron | 55.0% | |
CATTGGCCCACAGAACAACC+AGG | + | chr2_3:3321994-3322013 | None:intergenic | 55.0% | |
!! | GGCAAAAGTACCACCTGCAG+TGG | + | chr2_3:3322341-3322360 | None:intergenic | 55.0% |
ATCCTGTCATTACCCGGGGA+TGG | - | chr2_3:3323231-3323250 | Msa0271800:CDS | 55.0% | |
TTCCATCCCCGGGTAATGAC+AGG | + | chr2_3:3323236-3323255 | None:intergenic | 55.0% | |
GCTAACGCAAAGACAACCCG+GGG | + | chr2_3:3324534-3324553 | None:intergenic | 55.0% | |
!! | TGCGGCACTGATTGCAAGTC+GGG | - | chr2_3:3324657-3324676 | Msa0271800:intron | 55.0% |
! | GCGTCTGCAATCTAGAACGG+AGG | - | chr2_3:3325370-3325389 | Msa0271800:intron | 55.0% |
CTTGGGACAATACGTGCTCC+TGG | - | chr2_3:3325810-3325829 | Msa0271800:CDS | 55.0% | |
!! | CTTTGAGGCACCACAGGAAC+CGG | + | chr2_3:3325951-3325970 | None:intergenic | 55.0% |
GTCCTGGCGTCTACCAGAAA+TGG | - | chr2_3:3326472-3326491 | Msa0271800:intron | 55.0% | |
!! | CTCCATTTCTGGTAGACGCC+AGG | + | chr2_3:3326477-3326496 | None:intergenic | 55.0% |
CAACAGGGAATCGGAGGTTG+TGG | + | chr2_3:3326916-3326935 | None:intergenic | 55.0% | |
CTGCTACCGCTATCACACTG+TGG | + | chr2_3:3327219-3327238 | None:intergenic | 55.0% | |
!! | CACAGTGTGATAGCGGTAGC+AGG | - | chr2_3:3327217-3327236 | Msa0271800:intron | 55.0% |
CGCACACAACTGTGAGGTCC+TGG | + | chr2_3:3320917-3320936 | None:intergenic | 60.0% | |
AGGTTGGACGCCGTGAACCA+GGG | + | chr2_3:3321050-3321069 | None:intergenic | 60.0% | |
! | TAGGTTGGACGCCGTGAACC+AGG | + | chr2_3:3321051-3321070 | None:intergenic | 60.0% |
!! | CTGTAACCTGGGCTGGTCCA+AGG | - | chr2_3:3322895-3322914 | Msa0271800:CDS | 60.0% |
GCGTTGCCCAACAATGAGCG+AGG | + | chr2_3:3323049-3323068 | None:intergenic | 60.0% | |
GTTTCTCCTGGCTGCTTCGC+TGG | - | chr2_3:3324804-3324823 | Msa0271800:CDS | 60.0% | |
GTTCTGTGGAGCGTGGCAGA+TGG | - | chr2_3:3325651-3325670 | Msa0271800:intron | 60.0% | |
GGAGCGTGGCAGATGGAAGT+TGG | - | chr2_3:3325658-3325677 | Msa0271800:intron | 60.0% | |
TGAGGCAGACTCGCCGGAAA+AGG | + | chr2_3:3325983-3326002 | None:intergenic | 60.0% | |
AGCGGTAGCAGGTCCCCAAA+AGG | - | chr2_3:3327228-3327247 | Msa0271800:intron | 60.0% | |
TCACTGCCTTGGACCAGCCC+AGG | + | chr2_3:3322904-3322923 | None:intergenic | 65.0% | |
AGGCCCGACCAGCATCAGCA+TGG | + | chr2_3:3324468-3324487 | None:intergenic | 65.0% | |
CAAGCACCAGCGAAGCAGCC+AGG | + | chr2_3:3324813-3324832 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_3 | gene | 3320057 | 3327601 | 3320057 | ID=Msa0271800;Name=Msa0271800 |
chr2_3 | mRNA | 3320057 | 3327601 | 3320057 | ID=Msa0271800-mRNA-1;Parent=Msa0271800;Name=Msa0271800-mRNA-1;_AED=0.14;_eAED=0.14;_QI=68|0.88|0.8|1|1|1|10|426|823 |
chr2_3 | exon | 3320057 | 3321017 | 3320057 | ID=Msa0271800-mRNA-1:exon:1684;Parent=Msa0271800-mRNA-1 |
chr2_3 | exon | 3321625 | 3322147 | 3321625 | ID=Msa0271800-mRNA-1:exon:1683;Parent=Msa0271800-mRNA-1 |
chr2_3 | exon | 3322784 | 3323038 | 3322784 | ID=Msa0271800-mRNA-1:exon:1682;Parent=Msa0271800-mRNA-1 |
chr2_3 | exon | 3323153 | 3323267 | 3323153 | ID=Msa0271800-mRNA-1:exon:1681;Parent=Msa0271800-mRNA-1 |
chr2_3 | exon | 3323353 | 3323405 | 3323353 | ID=Msa0271800-mRNA-1:exon:1680;Parent=Msa0271800-mRNA-1 |
chr2_3 | exon | 3323571 | 3323831 | 3323571 | ID=Msa0271800-mRNA-1:exon:1679;Parent=Msa0271800-mRNA-1 |
chr2_3 | exon | 3324797 | 3324847 | 3324797 | ID=Msa0271800-mRNA-1:exon:1678;Parent=Msa0271800-mRNA-1 |
chr2_3 | exon | 3325063 | 3325267 | 3325063 | ID=Msa0271800-mRNA-1:exon:1677;Parent=Msa0271800-mRNA-1 |
chr2_3 | exon | 3325664 | 3325861 | 3325664 | ID=Msa0271800-mRNA-1:exon:1676;Parent=Msa0271800-mRNA-1 |
chr2_3 | exon | 3327258 | 3327601 | 3327258 | ID=Msa0271800-mRNA-1:exon:1675;Parent=Msa0271800-mRNA-1 |
chr2_3 | five_prime_UTR | 3327534 | 3327601 | 3327534 | ID=Msa0271800-mRNA-1:five_prime_utr;Parent=Msa0271800-mRNA-1 |
chr2_3 | CDS | 3327258 | 3327533 | 3327258 | ID=Msa0271800-mRNA-1:cds;Parent=Msa0271800-mRNA-1 |
chr2_3 | CDS | 3325664 | 3325861 | 3325664 | ID=Msa0271800-mRNA-1:cds;Parent=Msa0271800-mRNA-1 |
chr2_3 | CDS | 3325063 | 3325267 | 3325063 | ID=Msa0271800-mRNA-1:cds;Parent=Msa0271800-mRNA-1 |
chr2_3 | CDS | 3324797 | 3324847 | 3324797 | ID=Msa0271800-mRNA-1:cds;Parent=Msa0271800-mRNA-1 |
chr2_3 | CDS | 3323571 | 3323831 | 3323571 | ID=Msa0271800-mRNA-1:cds;Parent=Msa0271800-mRNA-1 |
chr2_3 | CDS | 3323353 | 3323405 | 3323353 | ID=Msa0271800-mRNA-1:cds;Parent=Msa0271800-mRNA-1 |
chr2_3 | CDS | 3323153 | 3323267 | 3323153 | ID=Msa0271800-mRNA-1:cds;Parent=Msa0271800-mRNA-1 |
chr2_3 | CDS | 3322784 | 3323038 | 3322784 | ID=Msa0271800-mRNA-1:cds;Parent=Msa0271800-mRNA-1 |
chr2_3 | CDS | 3321625 | 3322147 | 3321625 | ID=Msa0271800-mRNA-1:cds;Parent=Msa0271800-mRNA-1 |
chr2_3 | CDS | 3320483 | 3321017 | 3320483 | ID=Msa0271800-mRNA-1:cds;Parent=Msa0271800-mRNA-1 |
chr2_3 | three_prime_UTR | 3320057 | 3320482 | 3320057 | ID=Msa0271800-mRNA-1:three_prime_utr;Parent=Msa0271800-mRNA-1 |
Gene Sequence |
Protein sequence |