Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275800 | XP_013462787.2 | 61.732 | 358 | 54 | 7 | 1 | 275 | 1 | 358 | 2.11e-128 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275800 | sp|Q8LPL7|ADAL_ARATH | 43.478 | 345 | 116 | 8 | 9 | 274 | 7 | 351 | 7.39e-75 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275800 | A0A396J380 | 61.732 | 358 | 54 | 7 | 1 | 275 | 1 | 358 | 1.01e-128 | 379 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0196440 | Msa0275800 | 0.828832 | 7.218401e-55 | -8.615850e-47 |
| Msa0275750 | Msa0275800 | 0.817382 | 3.394952e-52 | -8.615850e-47 |
| Msa0275800 | Msa0436370 | 0.802904 | 4.496882e-49 | -8.615850e-47 |
| Msa0275800 | Msa1158660 | 0.800094 | 1.693568e-48 | -8.615850e-47 |
| Msa0275800 | Msa1379850 | 0.802094 | 6.604805e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275800 | MtrunA17_Chr2g0288101 | 61.732 | 358 | 54 | 7 | 1 | 275 | 1 | 358 | 1.94e-132 | 379 |
| Msa0275800 | MtrunA17_Chr4g0074591 | 46.978 | 364 | 99 | 10 | 3 | 276 | 13 | 372 | 8.56e-86 | 261 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275800 | AT4G04880.1 | 43.478 | 345 | 116 | 8 | 9 | 274 | 7 | 351 | 7.51e-76 | 235 |
| Msa0275800 | AT4G04880.2 | 40.107 | 374 | 116 | 9 | 9 | 274 | 7 | 380 | 9.52e-70 | 220 |
| Msa0275800 | AT4G04880.3 | 50.655 | 229 | 75 | 3 | 9 | 199 | 7 | 235 | 1.39e-66 | 209 |
Find 42 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGATAATGTTGTCTATT+TGG | 0.205652 | 2_3:+7935144 | Msa0275800:CDS |
| GCACTAGAAATGAGGCATTT+AGG | 0.266579 | 2_3:+7935601 | Msa0275800:CDS |
| TTAATTCAGTGTCAAGAATA+TGG | 0.280995 | 2_3:+7936908 | Msa0275800:CDS |
| CGATTGCATTTATCATTGTT+AGG | 0.339717 | 2_3:-7935410 | None:intergenic |
| TAGCTGCTTCTGTTGTTTCT+CGG | 0.362736 | 2_3:-7935480 | None:intergenic |
| AACAAGCATGTCCAATCCTT+TGG | 0.365045 | 2_3:-7935955 | None:intergenic |
| ATGTTGTCTATTTGGAGTTA+AGG | 0.369465 | 2_3:+7935152 | Msa0275800:CDS |
| AAATATGCTGCTGATTCATT+TGG | 0.375776 | 2_3:+7936705 | Msa0275800:CDS |
| ATTCAGAGAAACGATTCAAT+TGG | 0.376629 | 2_3:+7935287 | Msa0275800:intron |
| ACTGAAATTCGCACGAGAAC+AGG | 0.394195 | 2_3:+7935788 | Msa0275800:CDS |
| ATGAGGCATTTAGGTGTAGT+TGG | 0.401125 | 2_3:+7935610 | Msa0275800:CDS |
| GAGTATATATTTGCAGATAA+TGG | 0.414085 | 2_3:+7936859 | Msa0275800:CDS |
| TGAGCATGCAGTTCAACCTT+TGG | 0.422911 | 2_3:-7934003 | None:intergenic |
| GTCTATTCCTTAGGTTGGGA+AGG | 0.432979 | 2_3:+7936804 | Msa0275800:intron |
| TTTGTTTGACATCAAACATC+AGG | 0.434436 | 2_3:+7936115 | Msa0275800:CDS |
| TGAATTTCATCCCAAAGGAT+TGG | 0.443694 | 2_3:+7935944 | Msa0275800:CDS |
| GCATATAGAAGTTCACCATT+TGG | 0.445862 | 2_3:+7936150 | Msa0275800:CDS |
| TATGTTGACGCTGTAATTGA+AGG | 0.451211 | 2_3:+7935326 | Msa0275800:CDS |
| ACAAGCATGTCCAATCCTTT+GGG | 0.453119 | 2_3:-7935954 | None:intergenic |
| GTGGATTTCATTCCAAAGAC+TGG | 0.471560 | 2_3:+7935374 | Msa0275800:CDS |
| GTAGTTGGAATTGATCTCTC+TGG | 0.477585 | 2_3:+7935625 | Msa0275800:CDS |
| TGGAAATGTTTGAACTATCA+AGG | 0.479942 | 2_3:+7936827 | Msa0275800:CDS |
| CATATGACTATATGTCAGTC+AGG | 0.492127 | 2_3:+7936974 | Msa0275800:three_prime_UTR |
| AAGTCTGAATGAAACTCAAA+AGG | 0.502390 | 2_3:+7934175 | Msa0275800:CDS |
| ATGCTATAATTTCTCTCAAG+TGG | 0.502425 | 2_3:+7934198 | Msa0275800:CDS |
| GAACTGCATGCTCACCTCAA+TGG | 0.502646 | 2_3:+7934012 | Msa0275800:CDS |
| CATATTGATATACCATTCAC+CGG | 0.502916 | 2_3:-7935659 | None:intergenic |
| AGAAACAACAGAAGCAGCTA+TGG | 0.509552 | 2_3:+7935483 | Msa0275800:CDS |
| ATGCTTGAATTTCATCCCAA+AGG | 0.539711 | 2_3:+7935939 | Msa0275800:CDS |
| TATTCCTTAGGTTGGGAAGG+TGG | 0.563761 | 2_3:+7936807 | Msa0275800:intron |
| ATCAGTTAGCTCGGTCGATG+TGG | 0.576039 | 2_3:+7935355 | Msa0275800:CDS |
| TCTCGTGCGAATTTCAGTGC+TGG | 0.579135 | 2_3:-7935783 | None:intergenic |
| TCAAGCTTGCACTAGAAATG+AGG | 0.601803 | 2_3:+7935593 | Msa0275800:CDS |
| GGAGTTAAGGACTACTCCAA+AGG | 0.621368 | 2_3:+7935165 | Msa0275800:CDS |
| AGACTCTGATAGAACCATTG+AGG | 0.622072 | 2_3:-7934026 | None:intergenic |
| AGGCGTAAGATCAGTTAGCT+CGG | 0.649204 | 2_3:+7935346 | Msa0275800:CDS |
| TTGTGTGTCTATCATGCCAA+AGG | 0.678683 | 2_3:+7933987 | Msa0275800:CDS |
| CTGCTTCTGTTGTTTCTCGG+CGG | 0.694637 | 2_3:-7935477 | None:intergenic |
| TGAACTATCAAGGAATGCTG+TGG | 0.695948 | 2_3:+7936837 | Msa0275800:CDS |
| ATTCAATACAAGTCTCTCTG+AGG | 0.710482 | 2_3:+7936677 | Msa0275800:intron |
| TGTAACACTTCACTGCGGAG+AGG | 0.727183 | 2_3:+7935818 | Msa0275800:CDS |
| CTTAATGTAACACTTCACTG+CGG | 0.798024 | 2_3:+7935813 | Msa0275800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATTATTTACTTTTATTTT+AGG | + | chr2_3:7934516-7934535 | Msa0275800:intron | 10.0% |
| !! | GATGAAATAATTAATACATT+TGG | - | chr2_3:7936074-7936093 | None:intergenic | 15.0% |
| !! | TTTATTACAACTTTATGAAA+TGG | - | chr2_3:7936329-7936348 | None:intergenic | 15.0% |
| !! | ATTCAGAAAAAAGAAAAGAA+GGG | - | chr2_3:7934080-7934099 | None:intergenic | 20.0% |
| !! | AACACAAAATTCATCATATT+AGG | + | chr2_3:7934468-7934487 | Msa0275800:intron | 20.0% |
| !!! | TTTTATTTTAGGAACATCAT+AGG | + | chr2_3:7934527-7934546 | Msa0275800:intron | 20.0% |
| !! | TATACAATTGAAAATTCGAA+TGG | + | chr2_3:7934804-7934823 | Msa0275800:intron | 20.0% |
| !! | ATACAATTGAAAATTCGAAT+GGG | + | chr2_3:7934805-7934824 | Msa0275800:intron | 20.0% |
| !! | TCTAGAAAAAAATCATTGTT+AGG | + | chr2_3:7935437-7935456 | Msa0275800:intron | 20.0% |
| !!! | AAAATCGCTTTTTATTTTGT+AGG | + | chr2_3:7935748-7935767 | Msa0275800:intron | 20.0% |
| !! | TCCTTCAATTAATTTAAGTA+AGG | + | chr2_3:7936041-7936060 | Msa0275800:intron | 20.0% |
| !! | ACCTTACTTAAATTAATTGA+AGG | - | chr2_3:7936045-7936064 | None:intergenic | 20.0% |
| !!! | TTTGATTGATTCTATATTCA+TGG | - | chr2_3:7936208-7936227 | None:intergenic | 20.0% |
| !!! | TTGAACAGTTTTTTTTTATG+TGG | + | chr2_3:7936281-7936300 | Msa0275800:intron | 20.0% |
| !! | TTGTAATAAACTTTCACTAA+AGG | + | chr2_3:7936339-7936358 | Msa0275800:intron | 20.0% |
| ! | AAGAAAAGAAGGGAAATATT+TGG | - | chr2_3:7934070-7934089 | None:intergenic | 25.0% |
| ! | CATTCAGAAAAAAGAAAAGA+AGG | - | chr2_3:7934081-7934100 | None:intergenic | 25.0% |
| !! | GTTTTATATTGCAATCAAAC+AGG | - | chr2_3:7934253-7934272 | None:intergenic | 25.0% |
| ! | GTTTGATTGCAATATAAAAC+TGG | + | chr2_3:7934253-7934272 | Msa0275800:intron | 25.0% |
| !!! | TTTCAAGTTTTCAATACCTT+TGG | + | chr2_3:7934335-7934354 | Msa0275800:intron | 25.0% |
| ! | TCAAAATCAATATCAACCAA+AGG | - | chr2_3:7934354-7934373 | None:intergenic | 25.0% |
| !!! | AGTTTGATTTTGTCAACAAA+AGG | + | chr2_3:7934443-7934462 | Msa0275800:intron | 25.0% |
| !!! | CAGTAACATTTTTTACTCTA+TGG | - | chr2_3:7934756-7934775 | None:intergenic | 25.0% |
| ! | TTTAAGGACGAAGTAATATT+AGG | + | chr2_3:7934872-7934891 | Msa0275800:intron | 25.0% |
| ! | AAGAATCAACAGAATAGATT+AGG | - | chr2_3:7934899-7934918 | None:intergenic | 25.0% |
| !!! | ATTCTGTTGATTCTTATATG+TGG | + | chr2_3:7934904-7934923 | Msa0275800:intron | 25.0% |
| ! | TGTGAATTAGATCAAACAAT+TGG | - | chr2_3:7934969-7934988 | None:intergenic | 25.0% |
| ! | CAAGAATTACAAAAGAAGTA+TGG | + | chr2_3:7935016-7935035 | Msa0275800:intron | 25.0% |
| ! | GATGATAATAGCTAAAAAAC+AGG | + | chr2_3:7935105-7935124 | Msa0275800:intron | 25.0% |
| ! | ATCAGATAATGTTGTCTATT+TGG | + | chr2_3:7935144-7935163 | Msa0275800:CDS | 25.0% |
| ! | ATTCAATAGAAATAAGAACG+CGG | - | chr2_3:7935217-7935236 | None:intergenic | 25.0% |
| !! | ATCTGATGTTTATTTGTTAC+AGG | + | chr2_3:7935570-7935589 | Msa0275800:intron | 25.0% |
| !! | ATTTCATCTTGACTATTTTC+AGG | + | chr2_3:7936086-7936105 | Msa0275800:intron | 25.0% |
| ! | AACTTTACAAAACATGTTGT+AGG | + | chr2_3:7936238-7936257 | Msa0275800:intron | 25.0% |
| ! | TTTATGAAATGGCTTCAAAA+TGG | - | chr2_3:7936318-7936337 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTGTCTATTCCTT+AGG | + | chr2_3:7936795-7936814 | Msa0275800:intron | 25.0% |
| ! | GAGTATATATTTGCAGATAA+TGG | + | chr2_3:7936859-7936878 | Msa0275800:CDS | 25.0% |
| ! | TTAATTCAGTGTCAAGAATA+TGG | + | chr2_3:7936908-7936927 | Msa0275800:CDS | 25.0% |
| !!! | TTTTGAGTTTCATTCAGACT+TGG | - | chr2_3:7934176-7934195 | None:intergenic | 30.0% |
| AAGTCTGAATGAAACTCAAA+AGG | + | chr2_3:7934175-7934194 | Msa0275800:CDS | 30.0% | |
| ATGCTATAATTTCTCTCAAG+TGG | + | chr2_3:7934198-7934217 | Msa0275800:CDS | 30.0% | |
| AACAGGAGAATACATACATT+TGG | - | chr2_3:7934236-7934255 | None:intergenic | 30.0% | |
| TGATTATTACACACATGTGT+TGG | + | chr2_3:7934390-7934409 | Msa0275800:intron | 30.0% | |
| !!! | TTTGTTTTATAGTACCTCCT+CGG | + | chr2_3:7934637-7934656 | Msa0275800:intron | 30.0% |
| ACATATCATATATTTAGCCG+AGG | - | chr2_3:7934657-7934676 | None:intergenic | 30.0% | |
| AGAGTAAAAAATGTTACTGC+AGG | + | chr2_3:7934757-7934776 | Msa0275800:intron | 30.0% | |
| GAGTAAAAAATGTTACTGCA+GGG | + | chr2_3:7934758-7934777 | Msa0275800:intron | 30.0% | |
| AGTAAAAAATGTTACTGCAG+GGG | + | chr2_3:7934759-7934778 | Msa0275800:intron | 30.0% | |
| ! | GGTCTTATAAACAAGAACAT+GGG | + | chr2_3:7934826-7934845 | Msa0275800:intron | 30.0% |
| ! | ATGTTGTCTATTTGGAGTTA+AGG | + | chr2_3:7935152-7935171 | Msa0275800:CDS | 30.0% |
| ATTCAGAGAAACGATTCAAT+TGG | + | chr2_3:7935287-7935306 | Msa0275800:intron | 30.0% | |
| !!! | ATTTTAGAATCTCCAGTCTT+TGG | - | chr2_3:7935389-7935408 | None:intergenic | 30.0% |
| CGATTGCATTTATCATTGTT+AGG | - | chr2_3:7935413-7935432 | None:intergenic | 30.0% | |
| CATATTGATATACCATTCAC+CGG | - | chr2_3:7935662-7935681 | None:intergenic | 30.0% | |
| !! | AGTTGAAGTCTTCTAAAATC+CGG | + | chr2_3:7936002-7936021 | Msa0275800:intron | 30.0% |
| TTTGTTTGACATCAAACATC+AGG | + | chr2_3:7936115-7936134 | Msa0275800:CDS | 30.0% | |
| AAGCAAAAGAACATACCAAA+TGG | - | chr2_3:7936168-7936187 | None:intergenic | 30.0% | |
| ! | TTGGTATGTTCTTTTGCTTA+TGG | + | chr2_3:7936169-7936188 | Msa0275800:intron | 30.0% |
| TTCAACAAGTAGTTCATGTT+TGG | + | chr2_3:7936368-7936387 | Msa0275800:intron | 30.0% | |
| !!! | TCATGCAGCTTATTTTACAA+GGG | + | chr2_3:7936617-7936636 | Msa0275800:intron | 30.0% |
| !! | AAATATGCTGCTGATTCATT+TGG | + | chr2_3:7936705-7936724 | Msa0275800:CDS | 30.0% |
| ! | TTTTGTCTATTCCTTAGGTT+GGG | + | chr2_3:7936800-7936819 | Msa0275800:intron | 30.0% |
| TGGAAATGTTTGAACTATCA+AGG | + | chr2_3:7936827-7936846 | Msa0275800:CDS | 30.0% | |
| AACACAAACACACAACACAA+AGG | - | chr2_3:7934309-7934328 | None:intergenic | 35.0% | |
| AACACAAGACACAAAGACAA+AGG | - | chr2_3:7934420-7934439 | None:intergenic | 35.0% | |
| CAAAACATGACATGACTACT+TGG | + | chr2_3:7934575-7934594 | Msa0275800:intron | 35.0% | |
| TATCATATATTTAGCCGAGG+AGG | - | chr2_3:7934654-7934673 | None:intergenic | 35.0% | |
| ! | GGGTCTTATAAACAAGAACA+TGG | + | chr2_3:7934825-7934844 | Msa0275800:intron | 35.0% |
| CCTTAAATATAAGACCCTCT+TGG | - | chr2_3:7934859-7934878 | None:intergenic | 35.0% | |
| ! | CCAAGAGGGTCTTATATTTA+AGG | + | chr2_3:7934856-7934875 | Msa0275800:intron | 35.0% |
| TATTACAGATGAGCTTACAC+TGG | + | chr2_3:7934933-7934952 | Msa0275800:intron | 35.0% | |
| AGCTAAAAAACAGGTCATTG+AGG | + | chr2_3:7935114-7935133 | Msa0275800:intron | 35.0% | |
| ATGATCTGCATTGTTACCTT+TGG | - | chr2_3:7935184-7935203 | None:intergenic | 35.0% | |
| TATGTTGACGCTGTAATTGA+AGG | + | chr2_3:7935326-7935345 | Msa0275800:CDS | 35.0% | |
| !!! | ATATACCATTCACCGGTTTT+TGG | - | chr2_3:7935655-7935674 | None:intergenic | 35.0% |
| CTTAATGTAACACTTCACTG+CGG | + | chr2_3:7935813-7935832 | Msa0275800:CDS | 35.0% | |
| !! | GTTTTATTCTTCTGACCTTG+TGG | + | chr2_3:7935883-7935902 | Msa0275800:intron | 35.0% |
| ! | ATTGCGTATCTAAAACCACA+AGG | - | chr2_3:7935901-7935920 | None:intergenic | 35.0% |
| !! | GTTTTAGATACGCAATTCGA+AGG | + | chr2_3:7935905-7935924 | Msa0275800:intron | 35.0% |
| ATGCTTGAATTTCATCCCAA+AGG | + | chr2_3:7935939-7935958 | Msa0275800:CDS | 35.0% | |
| TGAATTTCATCCCAAAGGAT+TGG | + | chr2_3:7935944-7935963 | Msa0275800:CDS | 35.0% | |
| ! | GTTACTTTGAAGATGAACAC+TGG | + | chr2_3:7935975-7935994 | Msa0275800:intron | 35.0% |
| GCATATAGAAGTTCACCATT+TGG | + | chr2_3:7936150-7936169 | Msa0275800:CDS | 35.0% | |
| CTTCTGTACATGTTAAGTGT+AGG | + | chr2_3:7936534-7936553 | Msa0275800:intron | 35.0% | |
| CAAGAACATTGTGTTAAGAG+AGG | - | chr2_3:7936596-7936615 | None:intergenic | 35.0% | |
| CTCTCTTAACACAATGTTCT+TGG | + | chr2_3:7936594-7936613 | Msa0275800:intron | 35.0% | |
| !!! | GTCATGCAGCTTATTTTACA+AGG | + | chr2_3:7936616-7936635 | Msa0275800:intron | 35.0% |
| GTGTCATCAGTACATACTAA+AGG | - | chr2_3:7936651-7936670 | None:intergenic | 35.0% | |
| ATTCAATACAAGTCTCTCTG+AGG | + | chr2_3:7936677-7936696 | Msa0275800:intron | 35.0% | |
| ! | GTTTTGTCTATTCCTTAGGT+TGG | + | chr2_3:7936799-7936818 | Msa0275800:intron | 35.0% |
| CATATGACTATATGTCAGTC+AGG | + | chr2_3:7936974-7936993 | Msa0275800:three_prime_UTR | 35.0% | |
| TTGTGTGTCTATCATGCCAA+AGG | + | chr2_3:7933987-7934006 | Msa0275800:CDS | 40.0% | |
| AGACTCTGATAGAACCATTG+AGG | - | chr2_3:7934029-7934048 | None:intergenic | 40.0% | |
| CAAGACACAAAGACAAAGGT+AGG | - | chr2_3:7934416-7934435 | None:intergenic | 40.0% | |
| AACATGGGAAAATCTCCAAG+AGG | + | chr2_3:7934841-7934860 | Msa0275800:intron | 40.0% | |
| ACATGGGAAAATCTCCAAGA+GGG | + | chr2_3:7934842-7934861 | Msa0275800:intron | 40.0% | |
| GTGGATTTCATTCCAAAGAC+TGG | + | chr2_3:7935374-7935393 | Msa0275800:CDS | 40.0% | |
| !! | TAGCTGCTTCTGTTGTTTCT+CGG | - | chr2_3:7935483-7935502 | None:intergenic | 40.0% |
| AGAAACAACAGAAGCAGCTA+TGG | + | chr2_3:7935483-7935502 | Msa0275800:CDS | 40.0% | |
| TCAAGCTTGCACTAGAAATG+AGG | + | chr2_3:7935593-7935612 | Msa0275800:CDS | 40.0% | |
| ! | GCACTAGAAATGAGGCATTT+AGG | + | chr2_3:7935601-7935620 | Msa0275800:CDS | 40.0% |
| ! | ATGAGGCATTTAGGTGTAGT+TGG | + | chr2_3:7935610-7935629 | Msa0275800:CDS | 40.0% |
| GTAGTTGGAATTGATCTCTC+TGG | + | chr2_3:7935625-7935644 | Msa0275800:CDS | 40.0% | |
| ! | CTCTCTGGAAATCCAAAAAC+CGG | + | chr2_3:7935640-7935659 | Msa0275800:CDS | 40.0% |
| GAAATCCAAAAACCGGTGAA+TGG | + | chr2_3:7935647-7935666 | Msa0275800:CDS | 40.0% | |
| ACAAGCATGTCCAATCCTTT+GGG | - | chr2_3:7935957-7935976 | None:intergenic | 40.0% | |
| AACAAGCATGTCCAATCCTT+TGG | - | chr2_3:7935958-7935977 | None:intergenic | 40.0% | |
| !! | ATGCTGCTGATTCATTTGGT+AGG | + | chr2_3:7936709-7936728 | Msa0275800:intron | 40.0% |
| TGAACTATCAAGGAATGCTG+TGG | + | chr2_3:7936837-7936856 | Msa0275800:CDS | 40.0% | |
| TGAGCATGCAGTTCAACCTT+TGG | - | chr2_3:7934006-7934025 | None:intergenic | 45.0% | |
| TGTTACTGCAGGGGATATGT+TGG | + | chr2_3:7934768-7934787 | Msa0275800:intron | 45.0% | |
| GGAGTTAAGGACTACTCCAA+AGG | + | chr2_3:7935165-7935184 | Msa0275800:CDS | 45.0% | |
| AGGCGTAAGATCAGTTAGCT+CGG | + | chr2_3:7935346-7935365 | Msa0275800:CDS | 45.0% | |
| ACTGAAATTCGCACGAGAAC+AGG | + | chr2_3:7935788-7935807 | Msa0275800:CDS | 45.0% | |
| GGAGCATGCAAAAGTCTAAC+CGG | - | chr2_3:7936024-7936043 | None:intergenic | 45.0% | |
| !! | GTCTATTCCTTAGGTTGGGA+AGG | + | chr2_3:7936804-7936823 | Msa0275800:intron | 45.0% |
| !! | TATTCCTTAGGTTGGGAAGG+TGG | + | chr2_3:7936807-7936826 | Msa0275800:intron | 45.0% |
| ATTTCCACCTTCCCAACCTA+AGG | - | chr2_3:7936814-7936833 | None:intergenic | 45.0% | |
| GAACTGCATGCTCACCTCAA+TGG | + | chr2_3:7934012-7934031 | Msa0275800:CDS | 50.0% | |
| ATCAGTTAGCTCGGTCGATG+TGG | + | chr2_3:7935355-7935374 | Msa0275800:CDS | 50.0% | |
| !! | CTGCTTCTGTTGTTTCTCGG+CGG | - | chr2_3:7935480-7935499 | None:intergenic | 50.0% |
| TCTCGTGCGAATTTCAGTGC+TGG | - | chr2_3:7935786-7935805 | None:intergenic | 50.0% | |
| TGTAACACTTCACTGCGGAG+AGG | + | chr2_3:7935818-7935837 | Msa0275800:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 7933976 | 7937064 | 7933976 | ID=Msa0275800;Name=Msa0275800 |
| chr2_3 | mRNA | 7933976 | 7937064 | 7933976 | ID=Msa0275800-mRNA-1;Parent=Msa0275800;Name=Msa0275800-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.4|0.45|1|0.3|0.54|11|122|280 |
| chr2_3 | exon | 7933976 | 7934033 | 7933976 | ID=Msa0275800-mRNA-1:exon:3623;Parent=Msa0275800-mRNA-1 |
| chr2_3 | exon | 7934165 | 7934238 | 7934165 | ID=Msa0275800-mRNA-1:exon:3624;Parent=Msa0275800-mRNA-1 |
| chr2_3 | exon | 7935127 | 7935186 | 7935127 | ID=Msa0275800-mRNA-1:exon:3625;Parent=Msa0275800-mRNA-1 |
| chr2_3 | exon | 7935293 | 7935453 | 7935293 | ID=Msa0275800-mRNA-1:exon:3626;Parent=Msa0275800-mRNA-1 |
| chr2_3 | exon | 7935459 | 7935510 | 7935459 | ID=Msa0275800-mRNA-1:exon:3627;Parent=Msa0275800-mRNA-1 |
| chr2_3 | exon | 7935592 | 7935668 | 7935592 | ID=Msa0275800-mRNA-1:exon:3628;Parent=Msa0275800-mRNA-1 |
| chr2_3 | exon | 7935770 | 7935839 | 7935770 | ID=Msa0275800-mRNA-1:exon:3629;Parent=Msa0275800-mRNA-1 |
| chr2_3 | exon | 7935912 | 7935974 | 7935912 | ID=Msa0275800-mRNA-1:exon:3630;Parent=Msa0275800-mRNA-1 |
| chr2_3 | exon | 7936108 | 7936171 | 7936108 | ID=Msa0275800-mRNA-1:exon:3631;Parent=Msa0275800-mRNA-1 |
| chr2_3 | exon | 7936689 | 7936726 | 7936689 | ID=Msa0275800-mRNA-1:exon:3632;Parent=Msa0275800-mRNA-1 |
| chr2_3 | exon | 7936817 | 7937064 | 7936817 | ID=Msa0275800-mRNA-1:exon:3633;Parent=Msa0275800-mRNA-1 |
| chr2_3 | CDS | 7933976 | 7934033 | 7933976 | ID=Msa0275800-mRNA-1:cds;Parent=Msa0275800-mRNA-1 |
| chr2_3 | CDS | 7934165 | 7934238 | 7934165 | ID=Msa0275800-mRNA-1:cds;Parent=Msa0275800-mRNA-1 |
| chr2_3 | CDS | 7935127 | 7935186 | 7935127 | ID=Msa0275800-mRNA-1:cds;Parent=Msa0275800-mRNA-1 |
| chr2_3 | CDS | 7935293 | 7935453 | 7935293 | ID=Msa0275800-mRNA-1:cds;Parent=Msa0275800-mRNA-1 |
| chr2_3 | CDS | 7935459 | 7935510 | 7935459 | ID=Msa0275800-mRNA-1:cds;Parent=Msa0275800-mRNA-1 |
| chr2_3 | CDS | 7935592 | 7935668 | 7935592 | ID=Msa0275800-mRNA-1:cds;Parent=Msa0275800-mRNA-1 |
| chr2_3 | CDS | 7935770 | 7935839 | 7935770 | ID=Msa0275800-mRNA-1:cds;Parent=Msa0275800-mRNA-1 |
| chr2_3 | CDS | 7935912 | 7935974 | 7935912 | ID=Msa0275800-mRNA-1:cds;Parent=Msa0275800-mRNA-1 |
| chr2_3 | CDS | 7936108 | 7936171 | 7936108 | ID=Msa0275800-mRNA-1:cds;Parent=Msa0275800-mRNA-1 |
| chr2_3 | CDS | 7936689 | 7936726 | 7936689 | ID=Msa0275800-mRNA-1:cds;Parent=Msa0275800-mRNA-1 |
| chr2_3 | CDS | 7936817 | 7936942 | 7936817 | ID=Msa0275800-mRNA-1:cds;Parent=Msa0275800-mRNA-1 |
| chr2_3 | three_prime_UTR | 7936943 | 7937064 | 7936943 | ID=Msa0275800-mRNA-1:three_prime_utr;Parent=Msa0275800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
