AlfalfaGEDB | Msa0275780

M. sativa cultivar zhongmu-4 / Msa0275780

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0216240	Msa0275780	0.801463	8.897556e-49	-8.615850e-47
Msa0275780	Msa0376310	0.808575	2.895913e-50	-8.615850e-47
Msa0275780	Msa0607050	0.801536	8.598085e-49	-8.615850e-47
Msa0275780	Msa0968590	0.804141	2.491339e-49	-8.615850e-47
Msa0275780	Msa1013400	0.801061	1.075612e-48	-8.615850e-47
Msa0275780	Msa1218600	0.800337	1.510868e-48	-8.615850e-47
Msa0275780	Msa1267430	0.801692	7.988050e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 52 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCTAGTACCTTGGGT+TGG	0.566045	2_3:+7926083	Msa0275780:CDS
AACAACAGTAGCATCTAGTG+CGG	0.691339	2_3:+7926997	Msa0275780:CDS
ACAACATATACTAGTGATGG+TGG	0.581593	2_3:+7925010	Msa0275780:CDS
ACAAGCGAGAATTGAGAAGG+GGG	0.677747	2_3:-7924639	None:intergenic
ACGAAACGATGGTTTGGTAA+AGG	0.498665	2_3:-7924766	None:intergenic
ACTGTTGAGGTTGTTGTGTG+AGG	0.611105	2_3:-7924547	None:intergenic
AGCGGATTGAGAAAACACGG+CGG	0.867531	2_3:-7924662	None:intergenic
AGCTAGTACCTTGGGTTGGA+AGG	0.487552	2_3:+7926087	Msa0275780:CDS
ATATACTAGTGATGGTGGGT+TGG	0.570631	2_3:+7925015	Msa0275780:CDS
ATCAACACGAAACGATGGTT+TGG	0.473212	2_3:-7924772	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCATTTCTTCTTACAATTTC+TGG	-	chr2_3:7924451-7924470	None:intergenic	30.0%
AATTCAGCATAGAGTGAATA+AGG	-	chr2_3:7925168-7925187	None:intergenic	30.0%
CATTTGATTGAATACGTGTT+TGG	+	chr2_3:7925209-7925228	Msa0275780:intron	30.0%
TTGAATGTAAACACATGTGT+CGG	-	chr2_3:7925272-7925291	None:intergenic	30.0%
GTAATGTTAGCTAGAAATTG+AGG	+	chr2_3:7925549-7925568	Msa0275780:intron	30.0%
TTGAGGTTGTATTTGTTTGA+TGG	+	chr2_3:7925566-7925585	Msa0275780:intron	30.0%
TCCATGATATAGGTACTTAT+TGG	+	chr2_3:7925600-7925619	Msa0275780:intron	30.0%
ACCAATAAGTACCTATATCA+TGG	-	chr2_3:7925604-7925623	None:intergenic	30.0%
TACTTTGTATTCCATCTATG+TGG	+	chr2_3:7925965-7925984	Msa0275780:intron	30.0%
TTGAATTTATTCTTCAGAGC+AGG	+	chr2_3:7926302-7926321	Msa0275780:intron	30.0%

Showing 1 to 10 of 174 entries

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	7924352	7927241	7924352	ID=Msa0275780;Name=Msa0275780
chr2_3	mRNA	7924352	7927241	7924352	ID=Msa0275780-mRNA-1;Parent=Msa0275780;Name=Msa0275780-mRNA-1;_AED=0.15;_eAED=0.15;_QI=490\|0.5\|0.8\|1\|0.25\|0.2\|5\|172\|141
chr2_3	exon	7924352	7924897	7924352	ID=Msa0275780-mRNA-1:exon:3607;Parent=Msa0275780-mRNA-1
chr2_3	exon	7924986	7925060	7924986	ID=Msa0275780-mRNA-1:exon:3608;Parent=Msa0275780-mRNA-1
chr2_3	exon	7925612	7925663	7925612	ID=Msa0275780-mRNA-1:exon:3609;Parent=Msa0275780-mRNA-1
chr2_3	exon	7926023	7926177	7926023	ID=Msa0275780-mRNA-1:exon:3610;Parent=Msa0275780-mRNA-1
chr2_3	exon	7926982	7927241	7926982	ID=Msa0275780-mRNA-1:exon:3611;Parent=Msa0275780-mRNA-1
chr2_3	five_prime_UTR	7924352	7924841	7924352	ID=Msa0275780-mRNA-1:five_prime_utr;Parent=Msa0275780-mRNA-1
chr2_3	CDS	7924842	7924897	7924842	ID=Msa0275780-mRNA-1:cds;Parent=Msa0275780-mRNA-1
chr2_3	CDS	7924986	7925060	7924986	ID=Msa0275780-mRNA-1:cds;Parent=Msa0275780-mRNA-1
chr2_3	CDS	7925612	7925663	7925612	ID=Msa0275780-mRNA-1:cds;Parent=Msa0275780-mRNA-1
chr2_3	CDS	7926023	7926177	7926023	ID=Msa0275780-mRNA-1:cds;Parent=Msa0275780-mRNA-1
chr2_3	CDS	7926982	7927069	7926982	ID=Msa0275780-mRNA-1:cds;Parent=Msa0275780-mRNA-1
chr2_3	three_prime_UTR	7927070	7927241	7927070	ID=Msa0275780-mRNA-1:three_prime_utr;Parent=Msa0275780-mRNA-1

Gene Sequence

>Msa0275780

ATGCGCACAAATTTGATTTCTTTTGCGAGATTGGTTTCGGTCTTTTTTCTTGGATGGATGATTGTGAATGATGATAGTATACAACATATACTAGTGATGGTGGGTTGGCTATCTCTGGTGGGTCTGATTGGGTACTTATTGGTTGTGTTGCTGTTGCGATGGTTCATCAAGATCTACTGCATCCTGGACTTGTCGGACTTGTTGTGTTCCGAGACGCCTTCCTTGTTGGCGGTGCAATATTTCAAAGAGCTAGTACCTTGGGTTGGAAGGTATGAAATTAGAACGTGGTTCTCGAATTGTGTTTTTCTTTCAGCTTCAGAATTTGTGGAGATCAAAATCTGGTTAGTAGCTTCAACAACAGTAGCATCTAGTGCGGCATATGGTGTAAAATATTTGAGATCTCCAGTTGTATTAAAGTCAGCCTAG

Protein sequence

>Msa0275780

MRTNLISFARLVSVFFLGWMIVNDDSIQHILVMVGWLSLVGLIGYLLVVLLLRWFIKIYCILDLSDLLCSETPSLLAVQYFKELVPWVGRYEIRTWFSNCVFLSASEFVEIKIWLVASTTVASSAAYGVKYLRSPVVLKSA*