Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0216240 | Msa0275780 | 0.801463 | 8.897556e-49 | -8.615850e-47 |
| Msa0275780 | Msa0376310 | 0.808575 | 2.895913e-50 | -8.615850e-47 |
| Msa0275780 | Msa0607050 | 0.801536 | 8.598085e-49 | -8.615850e-47 |
| Msa0275780 | Msa0968590 | 0.804141 | 2.491339e-49 | -8.615850e-47 |
| Msa0275780 | Msa1013400 | 0.801061 | 1.075612e-48 | -8.615850e-47 |
| Msa0275780 | Msa1218600 | 0.800337 | 1.510868e-48 | -8.615850e-47 |
| Msa0275780 | Msa1267430 | 0.801692 | 7.988050e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTCTTCTTACAATTTC+TGG | 0.085413 | 2_3:-7924448 | None:intergenic |
| CTTACAATTTCTGGTAATTT+AGG | 0.122358 | 2_3:-7924439 | None:intergenic |
| TCCATGATATAGGTACTTAT+TGG | 0.261421 | 2_3:+7925600 | Msa0275780:intron |
| CTATCTCTGGTGGGTCTGAT+TGG | 0.297517 | 2_3:+7925038 | Msa0275780:CDS |
| TTGCGGTGGATTGTTCAAAT+TGG | 0.297995 | 2_3:-7924795 | None:intergenic |
| CTGTTAATCTTAATCTTCTT+CGG | 0.344731 | 2_3:+7924732 | Msa0275780:five_prime_UTR |
| CGAAACGATGGTTTGGTAAA+GGG | 0.349339 | 2_3:-7924765 | None:intergenic |
| TCTTTCAGCTTCAGAATTTG+TGG | 0.383259 | 2_3:+7926145 | Msa0275780:CDS |
| GTGTGGAGTAATGGTGAAAA+AGG | 0.390916 | 2_3:-7924582 | None:intergenic |
| TTCCGAGACGCCTTCCTTGT+TGG | 0.400196 | 2_3:+7926046 | Msa0275780:CDS |
| TAGGCTGACTTTAATACAAC+TGG | 0.403021 | 2_3:-7927046 | None:intergenic |
| GATGGTGGGTTGGCTATCTC+TGG | 0.408546 | 2_3:+7925025 | Msa0275780:CDS |
| TATCTCTGGTGGGTCTGATT+GGG | 0.422238 | 2_3:+7925039 | Msa0275780:CDS |
| TTTCAAAGAGCTAGTACCTT+GGG | 0.424582 | 2_3:+7926079 | Msa0275780:CDS |
| CCAGGAAAAGATAGAAGAAA+AGG | 0.442740 | 2_3:+7927197 | Msa0275780:three_prime_UTR |
| GTGGGTTGGCTATCTCTGGT+GGG | 0.465077 | 2_3:+7925029 | Msa0275780:CDS |
| ATCAACACGAAACGATGGTT+TGG | 0.473212 | 2_3:-7924772 | None:intergenic |
| GTATAAAATTGTGAACTTTG+CGG | 0.480203 | 2_3:-7924812 | None:intergenic |
| CGAGACGCCTTCCTTGTTGG+CGG | 0.487504 | 2_3:+7926049 | Msa0275780:CDS |
| AGCTAGTACCTTGGGTTGGA+AGG | 0.487552 | 2_3:+7926087 | Msa0275780:CDS |
| GGTGGGTTGGCTATCTCTGG+TGG | 0.496174 | 2_3:+7925028 | Msa0275780:CDS |
| ACGAAACGATGGTTTGGTAA+AGG | 0.498665 | 2_3:-7924766 | None:intergenic |
| ATTTCAAAGAGCTAGTACCT+TGG | 0.510171 | 2_3:+7926078 | Msa0275780:CDS |
| CGCCAACAAGGAAGGCGTCT+CGG | 0.523799 | 2_3:-7926048 | None:intergenic |
| GTAGCATCTAGTGCGGCATA+TGG | 0.524932 | 2_3:+7927004 | Msa0275780:CDS |
| GAAGAGTGATTATACTGTTG+AGG | 0.537445 | 2_3:-7924560 | None:intergenic |
| TGGTTGTGTTGCTGTTGCGA+TGG | 0.550993 | 2_3:+7925620 | Msa0275780:CDS |
| CGTGATGATAAAAGAGGTAG+CGG | 0.553106 | 2_3:-7924680 | None:intergenic |
| GACAAGCGAGAATTGAGAAG+GGG | 0.558470 | 2_3:-7924640 | None:intergenic |
| CGGACAAGCGAGAATTGAGA+AGG | 0.559329 | 2_3:-7924642 | None:intergenic |
| AAAGAGCTAGTACCTTGGGT+TGG | 0.566045 | 2_3:+7926083 | Msa0275780:CDS |
| ATATACTAGTGATGGTGGGT+TGG | 0.570631 | 2_3:+7925015 | Msa0275780:CDS |
| GCTTAGCGTGATGATAAAAG+AGG | 0.572381 | 2_3:-7924686 | None:intergenic |
| TATTGCACCGCCAACAAGGA+AGG | 0.575219 | 2_3:-7926056 | None:intergenic |
| TGTGTGAGGAAGTTCTAGAA+TGG | 0.580071 | 2_3:-7924533 | None:intergenic |
| GAAATATTGCACCGCCAACA+AGG | 0.581147 | 2_3:-7926060 | None:intergenic |
| ACAACATATACTAGTGATGG+TGG | 0.581593 | 2_3:+7925010 | Msa0275780:CDS |
| GAATGGTGTTTGAGTTTGTG+AGG | 0.596959 | 2_3:-7924516 | None:intergenic |
| TAAAATTGTGAACTTTGCGG+TGG | 0.598304 | 2_3:-7924809 | None:intergenic |
| GGACAAGCGAGAATTGAGAA+GGG | 0.602659 | 2_3:-7924641 | None:intergenic |
| ATTTCATACCTTCCAACCCA+AGG | 0.610422 | 2_3:-7926095 | None:intergenic |
| ACTGTTGAGGTTGTTGTGTG+AGG | 0.611105 | 2_3:-7924547 | None:intergenic |
| TATACAACATATACTAGTGA+TGG | 0.614412 | 2_3:+7925007 | Msa0275780:CDS |
| GAATCAACTAAATTTCGACT+AGG | 0.619581 | 2_3:-7927065 | None:intergenic |
| TGCTTGAAGTCGTTCAACAA+TGG | 0.626440 | 2_3:+7924468 | Msa0275780:five_prime_UTR |
| ATTGGATCAACACGAAACGA+TGG | 0.631460 | 2_3:-7924777 | None:intergenic |
| CAACATATACTAGTGATGGT+GGG | 0.664783 | 2_3:+7925011 | Msa0275780:CDS |
| ACAAGCGAGAATTGAGAAGG+GGG | 0.677747 | 2_3:-7924639 | None:intergenic |
| AACAACAGTAGCATCTAGTG+CGG | 0.691339 | 2_3:+7926997 | Msa0275780:CDS |
| GGTAGCGGATTGAGAAAACA+CGG | 0.703975 | 2_3:-7924665 | None:intergenic |
| GAAGGTATGAAATTAGAACG+TGG | 0.759887 | 2_3:+7926105 | Msa0275780:CDS |
| AGCGGATTGAGAAAACACGG+CGG | 0.867531 | 2_3:-7924662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTTACTTTTCTTT+TGG | - | chr2_3:7924374-7924393 | None:intergenic | 10.0% |
| !!! | TAAAGTTTTCATTTTTTATG+TGG | + | chr2_3:7925403-7925422 | Msa0275780:intron | 15.0% |
| !!! | AAAGTTTTCATTTTTTATGT+GGG | + | chr2_3:7925404-7925423 | Msa0275780:intron | 15.0% |
| !!! | ATTTTACTTTTCTTTTGGAT+TGG | - | chr2_3:7924369-7924388 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTGTGTTTTTTTA+TGG | + | chr2_3:7925694-7925713 | Msa0275780:intron | 20.0% |
| !! | AACAAGATCTTTAATTATTC+TGG | + | chr2_3:7925790-7925809 | Msa0275780:intron | 20.0% |
| !! | ACAAGATCTTTAATTATTCT+GGG | + | chr2_3:7925791-7925810 | Msa0275780:intron | 20.0% |
| !! | ATAGAAAATAGAATATAGAC+AGG | + | chr2_3:7926715-7926734 | Msa0275780:intron | 20.0% |
| !! | TCATAATCACTTATCTAAAT+TGG | + | chr2_3:7926861-7926880 | Msa0275780:intron | 20.0% |
| !! | CATAATCACTTATCTAAATT+GGG | + | chr2_3:7926862-7926881 | Msa0275780:intron | 20.0% |
| !!! | TTTTTTTTCTAAGCTGAATT+TGG | + | chr2_3:7926891-7926910 | Msa0275780:intron | 20.0% |
| !!! | CTTACAATTTCTGGTAATTT+AGG | - | chr2_3:7924442-7924461 | None:intergenic | 25.0% |
| ! | CTGTTAATCTTAATCTTCTT+CGG | + | chr2_3:7924732-7924751 | Msa0275780:five_prime_UTR | 25.0% |
| ! | GTATAAAATTGTGAACTTTG+CGG | - | chr2_3:7924815-7924834 | None:intergenic | 25.0% |
| ! | TTCATGTGTTGAATTGATTA+TGG | + | chr2_3:7924952-7924971 | Msa0275780:intron | 25.0% |
| !!! | ATTGATTATGGTGTTTTTGT+AGG | + | chr2_3:7924964-7924983 | Msa0275780:intron | 25.0% |
| ! | TATACAACATATACTAGTGA+TGG | + | chr2_3:7925007-7925026 | Msa0275780:CDS | 25.0% |
| !!! | AATTTCTAGCTAACATTACA+CGG | - | chr2_3:7925548-7925567 | None:intergenic | 25.0% |
| !! | ATGTTTTCAATCCATGATAT+AGG | + | chr2_3:7925590-7925609 | Msa0275780:intron | 25.0% |
| ! | GAGTATTTGTATTCATATAG+TGG | + | chr2_3:7925904-7925923 | Msa0275780:intron | 25.0% |
| !!! | TCTGATTTTTTTAACCTTGA+TGG | + | chr2_3:7926218-7926237 | Msa0275780:intron | 25.0% |
| !!! | CTGATTTTTTTAACCTTGAT+GGG | + | chr2_3:7926219-7926238 | Msa0275780:intron | 25.0% |
| ! | ATCCTAAAATTCATCAACAT+GGG | - | chr2_3:7926392-7926411 | None:intergenic | 25.0% |
| ! | AATCCTAAAATTCATCAACA+TGG | - | chr2_3:7926393-7926412 | None:intergenic | 25.0% |
| ! | TGGTATTATTAAAGATGGAA+AGG | - | chr2_3:7926541-7926560 | None:intergenic | 25.0% |
| ! | AATGGTAATTGTATAATCTG+AGG | - | chr2_3:7926620-7926639 | None:intergenic | 25.0% |
| !! | AAGTGATTATGATTGATTTC+TGG | - | chr2_3:7926853-7926872 | None:intergenic | 25.0% |
| ! | AAAAAAGTTGTTGTATTACC+AGG | + | chr2_3:7927179-7927198 | Msa0275780:three_prime_UTR | 25.0% |
| !! | TTCTTTTGGATTGGAAGAAA+GGG | - | chr2_3:7924360-7924379 | None:intergenic | 30.0% |
| !! | TTTCTTTTGGATTGGAAGAA+AGG | - | chr2_3:7924361-7924380 | None:intergenic | 30.0% |
| ! | TTTTCTCTCTCTTCTAAACT+TGG | - | chr2_3:7924407-7924426 | None:intergenic | 30.0% |
| GCATTTCTTCTTACAATTTC+TGG | - | chr2_3:7924451-7924470 | None:intergenic | 30.0% | |
| !! | TTTGATTTCTTTTGCGAGAT+TGG | + | chr2_3:7924853-7924872 | Msa0275780:CDS | 30.0% |
| AATTCAGCATAGAGTGAATA+AGG | - | chr2_3:7925168-7925187 | None:intergenic | 30.0% | |
| CATTTGATTGAATACGTGTT+TGG | + | chr2_3:7925209-7925228 | Msa0275780:intron | 30.0% | |
| TTGAATGTAAACACATGTGT+CGG | - | chr2_3:7925272-7925291 | None:intergenic | 30.0% | |
| ! | ATGAAGATTGATTCTGTAGT+TGG | + | chr2_3:7925464-7925483 | Msa0275780:intron | 30.0% |
| GTAATGTTAGCTAGAAATTG+AGG | + | chr2_3:7925549-7925568 | Msa0275780:intron | 30.0% | |
| TTGAGGTTGTATTTGTTTGA+TGG | + | chr2_3:7925566-7925585 | Msa0275780:intron | 30.0% | |
| TCCATGATATAGGTACTTAT+TGG | + | chr2_3:7925600-7925619 | Msa0275780:intron | 30.0% | |
| ACCAATAAGTACCTATATCA+TGG | - | chr2_3:7925604-7925623 | None:intergenic | 30.0% | |
| ! | TTGTGAACATCTTTTCTCTT+TGG | + | chr2_3:7925767-7925786 | Msa0275780:intron | 30.0% |
| TACTTTGTATTCCATCTATG+TGG | + | chr2_3:7925965-7925984 | Msa0275780:intron | 30.0% | |
| ! | TAAAGAGTGGTTCAACTTTT+TGG | - | chr2_3:7926253-7926272 | None:intergenic | 30.0% |
| TTGAATTTATTCTTCAGAGC+AGG | + | chr2_3:7926302-7926321 | Msa0275780:intron | 30.0% | |
| TGAATTTATTCTTCAGAGCA+GGG | + | chr2_3:7926303-7926322 | Msa0275780:intron | 30.0% | |
| !! | TTCCCATGTTGATGAATTTT+AGG | + | chr2_3:7926387-7926406 | Msa0275780:intron | 30.0% |
| TAAAGATGGAAAGGTAAAGT+CGG | - | chr2_3:7926532-7926551 | None:intergenic | 30.0% | |
| ATGAGTAAGGAGTTAAAGAA+TGG | - | chr2_3:7926638-7926657 | None:intergenic | 30.0% | |
| ! | AAGTTCTTTTTATGTGTTGC+TGG | - | chr2_3:7926661-7926680 | None:intergenic | 30.0% |
| ATAAATTGAAAAGCAGCATG+TGG | + | chr2_3:7926687-7926706 | Msa0275780:intron | 30.0% | |
| ATGAACCAAGTTCAACAAAT+GGG | - | chr2_3:7926950-7926969 | None:intergenic | 30.0% | |
| AATGAACCAAGTTCAACAAA+TGG | - | chr2_3:7926951-7926970 | None:intergenic | 30.0% | |
| GAATCAACTAAATTTCGACT+AGG | - | chr2_3:7927068-7927087 | None:intergenic | 30.0% | |
| ! | GTTCAACAATGGTGATTTTC+AGG | + | chr2_3:7924479-7924498 | Msa0275780:five_prime_UTR | 35.0% |
| GAAGAGTGATTATACTGTTG+AGG | - | chr2_3:7924563-7924582 | None:intergenic | 35.0% | |
| TAAAATTGTGAACTTTGCGG+TGG | - | chr2_3:7924812-7924831 | None:intergenic | 35.0% | |
| !!! | TTCTTTTGCGAGATTGGTTT+CGG | + | chr2_3:7924859-7924878 | Msa0275780:CDS | 35.0% |
| !!! | TTGGTTTCGGTCTTTTTTCT+TGG | + | chr2_3:7924872-7924891 | Msa0275780:CDS | 35.0% |
| !!! | TTTCGGTCTTTTTTCTTGGA+TGG | + | chr2_3:7924876-7924895 | Msa0275780:CDS | 35.0% |
| ACAACATATACTAGTGATGG+TGG | + | chr2_3:7925010-7925029 | Msa0275780:CDS | 35.0% | |
| CAACATATACTAGTGATGGT+GGG | + | chr2_3:7925011-7925030 | Msa0275780:CDS | 35.0% | |
| GTGTGTAATTGTAGCTTGAT+GGG | + | chr2_3:7925426-7925445 | Msa0275780:intron | 35.0% | |
| GAGAAAAGATGTTCACAACT+TGG | - | chr2_3:7925765-7925784 | None:intergenic | 35.0% | |
| GATCTTTAATTATTCTGGGC+TGG | + | chr2_3:7925795-7925814 | Msa0275780:intron | 35.0% | |
| AGTTCAGTAGCTGAAATAGA+AGG | + | chr2_3:7925874-7925893 | Msa0275780:intron | 35.0% | |
| GTTCAGTAGCTGAAATAGAA+GGG | + | chr2_3:7925875-7925894 | Msa0275780:intron | 35.0% | |
| ATAGTTTAGCACCACATAGA+TGG | - | chr2_3:7925979-7925998 | None:intergenic | 35.0% | |
| ! | TGGTGCTAAACTATTCATGT+TGG | + | chr2_3:7925985-7926004 | Msa0275780:intron | 35.0% |
| !!! | TTGGTTTTTGATTTTGCAGC+TGG | + | chr2_3:7926004-7926023 | Msa0275780:intron | 35.0% |
| ATTTCAAAGAGCTAGTACCT+TGG | + | chr2_3:7926078-7926097 | Msa0275780:CDS | 35.0% | |
| TTTCAAAGAGCTAGTACCTT+GGG | + | chr2_3:7926079-7926098 | Msa0275780:CDS | 35.0% | |
| ! | GAAGGTATGAAATTAGAACG+TGG | + | chr2_3:7926105-7926124 | Msa0275780:CDS | 35.0% |
| TCTTTCAGCTTCAGAATTTG+TGG | + | chr2_3:7926145-7926164 | Msa0275780:CDS | 35.0% | |
| AATGTAATCTTGAGTCTCTG+TGG | + | chr2_3:7926175-7926194 | Msa0275780:intron | 35.0% | |
| !!! | TTTTTTAACCTTGATGGGAC+CGG | + | chr2_3:7926224-7926243 | Msa0275780:intron | 35.0% |
| TGAACCACTCTTTATAAGCA+AGG | + | chr2_3:7926259-7926278 | Msa0275780:intron | 35.0% | |
| CTTACCTTGCTTATAAAGAG+TGG | - | chr2_3:7926266-7926285 | None:intergenic | 35.0% | |
| CACTCTTTATAAGCAAGGTA+AGG | + | chr2_3:7926264-7926283 | Msa0275780:intron | 35.0% | |
| ! | ACATGGGAAACATGATAATG+TGG | - | chr2_3:7926376-7926395 | None:intergenic | 35.0% |
| ATGCAGAAGAAAAGTGAAAG+TGG | - | chr2_3:7926490-7926509 | None:intergenic | 35.0% | |
| TGGGGTGGTATTATTAAAGA+TGG | - | chr2_3:7926546-7926565 | None:intergenic | 35.0% | |
| TCCCAAACAGTCATAAAGAT+GGG | - | chr2_3:7926565-7926584 | None:intergenic | 35.0% | |
| TTCCCAAACAGTCATAAAGA+TGG | - | chr2_3:7926566-7926585 | None:intergenic | 35.0% | |
| ATTGGTATTCCTCAGAAAGT+GGG | - | chr2_3:7926764-7926783 | None:intergenic | 35.0% | |
| AATTGGTATTCCTCAGAAAG+TGG | - | chr2_3:7926765-7926784 | None:intergenic | 35.0% | |
| ! | CTTTCTGAGGAATACCAATT+TGG | + | chr2_3:7926765-7926784 | Msa0275780:intron | 35.0% |
| !! | TTTTCCCCATTTGTTGAACT+TGG | + | chr2_3:7926942-7926961 | Msa0275780:intron | 35.0% |
| TGAACCAAGTTCAACAAATG+GGG | - | chr2_3:7926949-7926968 | None:intergenic | 35.0% | |
| ! | GTTGAACTTGGTTCATTTTC+TGG | + | chr2_3:7926954-7926973 | Msa0275780:intron | 35.0% |
| ! | TAGGCTGACTTTAATACAAC+TGG | - | chr2_3:7927049-7927068 | None:intergenic | 35.0% |
| ! | ATTTGAGCAGTACTTTTAGC+AGG | + | chr2_3:7927116-7927135 | Msa0275780:three_prime_UTR | 35.0% |
| ! | CCTTTTCTTCTATCTTTTCC+TGG | - | chr2_3:7927200-7927219 | None:intergenic | 35.0% |
| CCAGGAAAAGATAGAAGAAA+AGG | + | chr2_3:7927197-7927216 | Msa0275780:three_prime_UTR | 35.0% | |
| TGCTTGAAGTCGTTCAACAA+TGG | + | chr2_3:7924468-7924487 | Msa0275780:five_prime_UTR | 40.0% | |
| ! | GAATGGTGTTTGAGTTTGTG+AGG | - | chr2_3:7924519-7924538 | None:intergenic | 40.0% |
| !! | TGTGTGAGGAAGTTCTAGAA+TGG | - | chr2_3:7924536-7924555 | None:intergenic | 40.0% |
| GTGTGGAGTAATGGTGAAAA+AGG | - | chr2_3:7924585-7924604 | None:intergenic | 40.0% | |
| CGTGATGATAAAAGAGGTAG+CGG | - | chr2_3:7924683-7924702 | None:intergenic | 40.0% | |
| GCTTAGCGTGATGATAAAAG+AGG | - | chr2_3:7924689-7924708 | None:intergenic | 40.0% | |
| !! | CGAAACGATGGTTTGGTAAA+GGG | - | chr2_3:7924768-7924787 | None:intergenic | 40.0% |
| !! | ACGAAACGATGGTTTGGTAA+AGG | - | chr2_3:7924769-7924788 | None:intergenic | 40.0% |
| ATCAACACGAAACGATGGTT+TGG | - | chr2_3:7924775-7924794 | None:intergenic | 40.0% | |
| ATTGGATCAACACGAAACGA+TGG | - | chr2_3:7924780-7924799 | None:intergenic | 40.0% | |
| !! | TTGCGGTGGATTGTTCAAAT+TGG | - | chr2_3:7924798-7924817 | None:intergenic | 40.0% |
| !! | ATATACTAGTGATGGTGGGT+TGG | + | chr2_3:7925015-7925034 | Msa0275780:CDS | 40.0% |
| CACTAACACATCTACACATG+TGG | - | chr2_3:7925319-7925338 | None:intergenic | 40.0% | |
| ! | ATGAAGCACTAACACAGACA+CGG | - | chr2_3:7925371-7925390 | None:intergenic | 40.0% |
| GGTGTGTAATTGTAGCTTGA+TGG | + | chr2_3:7925425-7925444 | Msa0275780:intron | 40.0% | |
| ! | ATTGTAGCTTGATGGGTATG+TGG | + | chr2_3:7925433-7925452 | Msa0275780:intron | 40.0% |
| ATCGATACCTTATCAGCAAG+GGG | - | chr2_3:7925503-7925522 | None:intergenic | 40.0% | |
| CATCGATACCTTATCAGCAA+GGG | - | chr2_3:7925504-7925523 | None:intergenic | 40.0% | |
| TCATCGATACCTTATCAGCA+AGG | - | chr2_3:7925505-7925524 | None:intergenic | 40.0% | |
| TCGTAAGTAGTGCTTCACTT+CGG | + | chr2_3:7925662-7925681 | Msa0275780:intron | 40.0% | |
| ATTTCATACCTTCCAACCCA+AGG | - | chr2_3:7926098-7926117 | None:intergenic | 40.0% | |
| ! | CAAGGTAAGGCATTATCAGT+GGG | + | chr2_3:7926277-7926296 | Msa0275780:intron | 40.0% |
| AGAAAGCTACTCCAACCTAA+AGG | - | chr2_3:7926336-7926355 | None:intergenic | 40.0% | |
| ACATCTAGAAGAGACTGCAA+AGG | - | chr2_3:7926445-7926464 | None:intergenic | 40.0% | |
| AGGTAAAGTCGGTAAGTATG+TGG | - | chr2_3:7926521-7926540 | None:intergenic | 40.0% | |
| AAACAGTCATAAAGATGGGG+TGG | - | chr2_3:7926561-7926580 | None:intergenic | 40.0% | |
| ACCCCATCTTTATGACTGTT+TGG | + | chr2_3:7926560-7926579 | Msa0275780:intron | 40.0% | |
| CCCAAACAGTCATAAAGATG+GGG | - | chr2_3:7926564-7926583 | None:intergenic | 40.0% | |
| CCCCATCTTTATGACTGTTT+GGG | + | chr2_3:7926561-7926580 | Msa0275780:intron | 40.0% | |
| ! | TATGTGTTGCTGGATGAGTA+AGG | - | chr2_3:7926651-7926670 | None:intergenic | 40.0% |
| AGAAAGTGGGATGAACAGAA+AGG | - | chr2_3:7926751-7926770 | None:intergenic | 40.0% | |
| TGAGGAATACCAATTTGGAC+AGG | + | chr2_3:7926770-7926789 | Msa0275780:intron | 40.0% | |
| CTGTATTCACCTGTCCAAAT+TGG | - | chr2_3:7926782-7926801 | None:intergenic | 40.0% | |
| !! | GCTGAATTTGGCTCGAATTT+TGG | + | chr2_3:7926903-7926922 | Msa0275780:intron | 40.0% |
| ATGGGGAAAACATCAGAACA+AGG | - | chr2_3:7926932-7926951 | None:intergenic | 40.0% | |
| AACAACAGTAGCATCTAGTG+CGG | + | chr2_3:7926997-7927016 | Msa0275780:CDS | 40.0% | |
| ACTGTTGAGGTTGTTGTGTG+AGG | - | chr2_3:7924550-7924569 | None:intergenic | 45.0% | |
| ! | AAAAAGCGCGTGTGGAGTAA+TGG | - | chr2_3:7924594-7924613 | None:intergenic | 45.0% |
| ACAAGCGAGAATTGAGAAGG+GGG | - | chr2_3:7924642-7924661 | None:intergenic | 45.0% | |
| GACAAGCGAGAATTGAGAAG+GGG | - | chr2_3:7924643-7924662 | None:intergenic | 45.0% | |
| GGACAAGCGAGAATTGAGAA+GGG | - | chr2_3:7924644-7924663 | None:intergenic | 45.0% | |
| !! | GGTAGCGGATTGAGAAAACA+CGG | - | chr2_3:7924668-7924687 | None:intergenic | 45.0% |
| ! | TATCTCTGGTGGGTCTGATT+GGG | + | chr2_3:7925039-7925058 | Msa0275780:CDS | 45.0% |
| ATCAGCAAGGGGATCAAGAT+AGG | - | chr2_3:7925492-7925511 | None:intergenic | 45.0% | |
| TCTTGATCCCCTTGCTGATA+AGG | + | chr2_3:7925493-7925512 | Msa0275780:intron | 45.0% | |
| ! | GATTTTGCAGCTGGACTTGT+CGG | + | chr2_3:7926013-7926032 | Msa0275780:intron | 45.0% |
| GAAATATTGCACCGCCAACA+AGG | - | chr2_3:7926063-7926082 | None:intergenic | 45.0% | |
| AAAGAGCTAGTACCTTGGGT+TGG | + | chr2_3:7926083-7926102 | Msa0275780:CDS | 45.0% | |
| AGTCTCTGTGGTTATCTCAG+TGG | + | chr2_3:7926187-7926206 | Msa0275780:intron | 45.0% | |
| TGGTTATCTCAGTGGAAAGC+TGG | + | chr2_3:7926195-7926214 | Msa0275780:intron | 45.0% | |
| !! | TGGTTCAACTTTTTGGCGAC+CGG | - | chr2_3:7926246-7926265 | None:intergenic | 45.0% |
| ! | GCAAGGTAAGGCATTATCAG+TGG | + | chr2_3:7926276-7926295 | Msa0275780:intron | 45.0% |
| TACTCCAACCTAAAGGTCCA+AGG | - | chr2_3:7926329-7926348 | None:intergenic | 45.0% | |
| ACTGTTTGGGAACATGACCA+GGG | + | chr2_3:7926574-7926593 | Msa0275780:intron | 45.0% | |
| CACTTCACAAGTCTAAACCC+TGG | - | chr2_3:7926594-7926613 | None:intergenic | 45.0% | |
| GGGTTTAGACTTGTGAAGTG+AGG | + | chr2_3:7926594-7926613 | Msa0275780:intron | 45.0% | |
| TCTGTTCATCCCACTTTCTG+AGG | + | chr2_3:7926752-7926771 | Msa0275780:intron | 45.0% | |
| ! | AGTAAGCGAAAAAGCGCGTG+TGG | - | chr2_3:7924602-7924621 | None:intergenic | 50.0% |
| CGGACAAGCGAGAATTGAGA+AGG | - | chr2_3:7924645-7924664 | None:intergenic | 50.0% | |
| !! | AGCGGATTGAGAAAACACGG+CGG | - | chr2_3:7924665-7924684 | None:intergenic | 50.0% |
| ! | CTATCTCTGGTGGGTCTGAT+TGG | + | chr2_3:7925038-7925057 | Msa0275780:CDS | 50.0% |
| ! | AGCTTGATGGGTATGTGGCT+AGG | + | chr2_3:7925438-7925457 | Msa0275780:intron | 50.0% |
| ! | TGGTTGTGTTGCTGTTGCGA+TGG | + | chr2_3:7925620-7925639 | Msa0275780:CDS | 50.0% |
| TAGTGCTTCACTTCGGTAGC+TGG | + | chr2_3:7925669-7925688 | Msa0275780:intron | 50.0% | |
| TATTGCACCGCCAACAAGGA+AGG | - | chr2_3:7926059-7926078 | None:intergenic | 50.0% | |
| !! | AGCTAGTACCTTGGGTTGGA+AGG | + | chr2_3:7926087-7926106 | Msa0275780:CDS | 50.0% |
| TATTCTTCAGAGCAGGGCCT+TGG | + | chr2_3:7926309-7926328 | Msa0275780:intron | 50.0% | |
| GACTGTTTGGGAACATGACC+AGG | + | chr2_3:7926573-7926592 | Msa0275780:intron | 50.0% | |
| !! | GGTTCATTTTCTGGTGCAGC+TGG | + | chr2_3:7926963-7926982 | Msa0275780:intron | 50.0% |
| GTAGCATCTAGTGCGGCATA+TGG | + | chr2_3:7927004-7927023 | Msa0275780:CDS | 50.0% | |
| !! | GATGGTGGGTTGGCTATCTC+TGG | + | chr2_3:7925025-7925044 | Msa0275780:CDS | 55.0% |
| !! | GTGGGTTGGCTATCTCTGGT+GGG | + | chr2_3:7925029-7925048 | Msa0275780:CDS | 55.0% |
| TTCCGAGACGCCTTCCTTGT+TGG | + | chr2_3:7926046-7926065 | Msa0275780:CDS | 55.0% | |
| AGGGCCTTGGACCTTTAGGT+TGG | + | chr2_3:7926322-7926341 | Msa0275780:intron | 55.0% | |
| GAGCAGCTGCAAACGCTAAC+TGG | - | chr2_3:7926809-7926828 | None:intergenic | 55.0% | |
| !! | GGTGGGTTGGCTATCTCTGG+TGG | + | chr2_3:7925028-7925047 | Msa0275780:CDS | 60.0% |
| !! | CGCCAACAAGGAAGGCGTCT+CGG | - | chr2_3:7926051-7926070 | None:intergenic | 60.0% |
| CGAGACGCCTTCCTTGTTGG+CGG | + | chr2_3:7926049-7926068 | Msa0275780:CDS | 60.0% | |
| TTTGGCGACCGGTCCCATCA+AGG | - | chr2_3:7926235-7926254 | None:intergenic | 60.0% | |
| GAGCAGGGCCTTGGACCTTT+AGG | + | chr2_3:7926318-7926337 | Msa0275780:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 7924352 | 7927241 | 7924352 | ID=Msa0275780;Name=Msa0275780 |
| chr2_3 | mRNA | 7924352 | 7927241 | 7924352 | ID=Msa0275780-mRNA-1;Parent=Msa0275780;Name=Msa0275780-mRNA-1;_AED=0.15;_eAED=0.15;_QI=490|0.5|0.8|1|0.25|0.2|5|172|141 |
| chr2_3 | exon | 7924352 | 7924897 | 7924352 | ID=Msa0275780-mRNA-1:exon:3607;Parent=Msa0275780-mRNA-1 |
| chr2_3 | exon | 7924986 | 7925060 | 7924986 | ID=Msa0275780-mRNA-1:exon:3608;Parent=Msa0275780-mRNA-1 |
| chr2_3 | exon | 7925612 | 7925663 | 7925612 | ID=Msa0275780-mRNA-1:exon:3609;Parent=Msa0275780-mRNA-1 |
| chr2_3 | exon | 7926023 | 7926177 | 7926023 | ID=Msa0275780-mRNA-1:exon:3610;Parent=Msa0275780-mRNA-1 |
| chr2_3 | exon | 7926982 | 7927241 | 7926982 | ID=Msa0275780-mRNA-1:exon:3611;Parent=Msa0275780-mRNA-1 |
| chr2_3 | five_prime_UTR | 7924352 | 7924841 | 7924352 | ID=Msa0275780-mRNA-1:five_prime_utr;Parent=Msa0275780-mRNA-1 |
| chr2_3 | CDS | 7924842 | 7924897 | 7924842 | ID=Msa0275780-mRNA-1:cds;Parent=Msa0275780-mRNA-1 |
| chr2_3 | CDS | 7924986 | 7925060 | 7924986 | ID=Msa0275780-mRNA-1:cds;Parent=Msa0275780-mRNA-1 |
| chr2_3 | CDS | 7925612 | 7925663 | 7925612 | ID=Msa0275780-mRNA-1:cds;Parent=Msa0275780-mRNA-1 |
| chr2_3 | CDS | 7926023 | 7926177 | 7926023 | ID=Msa0275780-mRNA-1:cds;Parent=Msa0275780-mRNA-1 |
| chr2_3 | CDS | 7926982 | 7927069 | 7926982 | ID=Msa0275780-mRNA-1:cds;Parent=Msa0275780-mRNA-1 |
| chr2_3 | three_prime_UTR | 7927070 | 7927241 | 7927070 | ID=Msa0275780-mRNA-1:three_prime_utr;Parent=Msa0275780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
