AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1267430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267430 MtrunA17_Chr4g0076891 99.371 159 1 0 1 159 144 302 5.38e-114 325
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267430 AT2G02570.1 70.440 159 44 1 1 159 144 299 1.97e-79 238
Msa1267430 AT2G02570.4 70.440 159 44 1 1 159 144 299 1.97e-79 238
Msa1267430 AT2G02570.2 70.440 159 44 1 1 159 144 299 1.97e-79 238
Msa1267430 AT2G02570.3 64.151 159 42 2 1 159 144 287 5.82e-69 210

Find 43 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCCGCATCTTAGACTTAA+AGG 0.209233 8_2:+72658216 None:intergenic
GGCTCTATACGAAGCTTTGC+AGG 0.323302 8_2:+72658522 None:intergenic
TCAACAGTTCCTTCTTGAAT+TGG 0.334241 8_2:+72658645 None:intergenic
CTTCAAGATTGGTTTCTTCT+CGG 0.338340 8_2:-72657513 Msa1267430:intron
AAGTGTTGCACATACATAAA+AGG 0.361047 8_2:+72657203 None:intergenic
CAAGGAAAGGTTGGTGTGAC+TGG 0.362128 8_2:-72657449 Msa1267430:CDS
CATACAATCGAAGGGCTAAC+TGG 0.395003 8_2:+72657335 None:intergenic
CAAACAGCCTCTACAGTGAT+TGG 0.395110 8_2:+72657295 None:intergenic
ACCTTTCCTTGAGGATCATC+AGG 0.403855 8_2:+72657461 None:intergenic
AAGGTTGGTGTGACTGGAAG+TGG 0.416029 8_2:-72657443 Msa1267430:CDS
TTGAATTGGCCTTATGTTAG+CGG 0.420910 8_2:+72658659 None:intergenic
TTCAAGATTGGTTTCTTCTC+GGG 0.438391 8_2:-72657512 Msa1267430:intron
ATGTATGTGCAACACTTACA+TGG 0.439586 8_2:-72657197 Msa1267430:three_prime_UTR
ACACAACTCACCACATCCTC+AGG 0.452174 8_2:+72658492 None:intergenic
ACCACATCCTCAGGGTCATC+GGG 0.452351 8_2:+72658501 None:intergenic
TACAATCGAGAATGATGATT+AGG 0.470705 8_2:-72657366 Msa1267430:exon
CACCACATCCTCAGGGTCAT+CGG 0.475099 8_2:+72658500 None:intergenic
GGTGTGACTGGAAGTGGGAA+AGG 0.475251 8_2:-72657437 Msa1267430:CDS
AGGTAGATCCCGCTAACATA+AGG 0.476232 8_2:-72658668 Msa1267430:CDS
TGAATTGGCCTTATGTTAGC+GGG 0.489549 8_2:+72658660 None:intergenic
AAAATAAGCGGCAAAATGCT+TGG 0.521225 8_2:-72658174 Msa1267430:CDS
ACTCGCTCAGCTTCAACTAA+AGG 0.522831 8_2:+72658621 None:intergenic
AGTTGCTGAAGCTACAAAGC+AGG 0.562918 8_2:-72658601 Msa1267430:CDS
TCCTGATGATCCTCAAGGAA+AGG 0.563297 8_2:-72657462 Msa1267430:CDS
CTACAAAGCAGGCTATCAAA+CGG 0.564191 8_2:-72658590 Msa1267430:CDS
AAATCTCCTGATGATCCTCA+AGG 0.567592 8_2:-72657467 Msa1267430:CDS
CAAACGGAAAATTGCGCAAG+CGG 0.570501 8_2:-72658574 Msa1267430:CDS
GATGATCCTCAAGGAAAGGT+TGG 0.575071 8_2:-72657458 Msa1267430:CDS
GCCCGATGACCCTGAGGATG+TGG 0.576654 8_2:-72658502 Msa1267430:intron
AACATAAGGCCAATTCAAGA+AGG 0.580826 8_2:-72658654 Msa1267430:CDS
AGGTTGGTGTGACTGGAAGT+GGG 0.590449 8_2:-72657442 Msa1267430:CDS
CAGCAGTTCCAGACAACCAA+GGG 0.593266 8_2:-72658151 Msa1267430:CDS
AGATTGGTTTCTTCTCGGGA+AGG 0.610846 8_2:-72657508 Msa1267430:CDS
TTGAAGTCACCCAAAATAAG+CGG 0.630424 8_2:-72658186 Msa1267430:CDS
GCAGCAGTTCCAGACAACCA+AGG 0.644897 8_2:-72658152 Msa1267430:CDS
TGTTACATACATACAATCGA+AGG 0.646002 8_2:+72657326 None:intergenic
GCTCAAACCAATCACTGTAG+AGG 0.646028 8_2:-72657302 Msa1267430:three_prime_UTR
CACAACTCACCACATCCTCA+GGG 0.646183 8_2:+72658493 None:intergenic
CTTTAAGTCTAAGATGCGGA+TGG 0.652129 8_2:-72658215 Msa1267430:CDS
GTTACATACATACAATCGAA+GGG 0.653029 8_2:+72657327 None:intergenic
GTCACACCAACCTTTCCTTG+AGG 0.671537 8_2:+72657452 None:intergenic
ATGCCTTTAAGTCTAAGATG+CGG 0.694744 8_2:-72658219 Msa1267430:CDS
TATAGAGCCCGATGACCCTG+AGG 0.709309 8_2:-72658508 Msa1267430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTGAAAAAAGAATATA+AGG - chr8_2:72658201-72658220 Msa1267430:CDS 10.0%
!! TTTATTGAAAAAAGAATATA+AGG - chr8_2:72658201-72658220 Msa1267430:CDS 10.0%
!!! CTATTTTAAGATTATTGTTT+TGG - chr8_2:72658629-72658648 Msa1267430:CDS 15.0%
!!! CTATTTTAAGATTATTGTTT+TGG - chr8_2:72658629-72658648 Msa1267430:CDS 15.0%
!!! GTCTTAATAAATATTTTCCT+TGG - chr8_2:72657432-72657451 Msa1267430:CDS 20.0%
!!! AGCTAAAAAATATTTTCACA+TGG + chr8_2:72658086-72658105 None:intergenic 20.0%
!! ATATAAAACACAAATATCAG+TGG + chr8_2:72658251-72658270 None:intergenic 20.0%
!!! GTCTTAATAAATATTTTCCT+TGG - chr8_2:72657432-72657451 Msa1267430:CDS 20.0%
!!! AGCTAAAAAATATTTTCACA+TGG + chr8_2:72658086-72658105 None:intergenic 20.0%
!! ATATAAAACACAAATATCAG+TGG + chr8_2:72658251-72658270 None:intergenic 20.0%
!! TTTTCTGCAAATGTATTTCT+TGG - chr8_2:72657498-72657517 Msa1267430:CDS 25.0%
! AATAGTAGAGAAATTGAGAA+AGG + chr8_2:72657747-72657766 None:intergenic 25.0%
! TATGTCTTAAAGTGACTAAT+GGG - chr8_2:72657843-72657862 Msa1267430:intron 25.0%
!! TAAATTCAACAACTTTTCCA+GGG + chr8_2:72658185-72658204 None:intergenic 25.0%
!! ATAAATTCAACAACTTTTCC+AGG + chr8_2:72658186-72658205 None:intergenic 25.0%
!! ATTGTGAAAATTCTAGAGAT+CGG + chr8_2:72658228-72658247 None:intergenic 25.0%
!! TTTTCTGCAAATGTATTTCT+TGG - chr8_2:72657498-72657517 Msa1267430:CDS 25.0%
! AATAGTAGAGAAATTGAGAA+AGG + chr8_2:72657747-72657766 None:intergenic 25.0%
! TATGTCTTAAAGTGACTAAT+GGG - chr8_2:72657843-72657862 Msa1267430:intron 25.0%
!! TAAATTCAACAACTTTTCCA+GGG + chr8_2:72658185-72658204 None:intergenic 25.0%
!! ATAAATTCAACAACTTTTCC+AGG + chr8_2:72658186-72658205 None:intergenic 25.0%
!! ATTGTGAAAATTCTAGAGAT+CGG + chr8_2:72658228-72658247 None:intergenic 25.0%
AGAAAACTGGCAGATAAATT+TGG + chr8_2:72657553-72657572 None:intergenic 30.0%
! AATTTATCTGCCAGTTTTCT+AGG - chr8_2:72657553-72657572 Msa1267430:intron 30.0%
! GTTAGCAAACATGTCATTTA+GGG + chr8_2:72657582-72657601 None:intergenic 30.0%
! AGTTAGCAAACATGTCATTT+AGG + chr8_2:72657583-72657602 None:intergenic 30.0%
TAGTTTCTATGCAAGAATGT+AGG - chr8_2:72657809-72657828 Msa1267430:intron 30.0%
GTATGTCTTAAAGTGACTAA+TGG - chr8_2:72657842-72657861 Msa1267430:intron 30.0%
TATGTTAGGATGGTCAAAAA+TGG + chr8_2:72657884-72657903 None:intergenic 30.0%
TATCATTGCAGTCATTAAGT+TGG - chr8_2:72658004-72658023 Msa1267430:intron 30.0%
AATCTATTTACCCCTTGAAT+CGG - chr8_2:72658116-72658135 Msa1267430:intron 30.0%
! TTGTGAAAATTCTAGAGATC+GGG + chr8_2:72658227-72658246 None:intergenic 30.0%
!!! AGAAAAGCATTTTCATCTGA+AGG - chr8_2:72658463-72658482 Msa1267430:intron 30.0%
TACAATCGAGAATGATGATT+AGG - chr8_2:72658490-72658509 Msa1267430:intron 30.0%
GTTACATACATACAATCGAA+GGG + chr8_2:72658532-72658551 None:intergenic 30.0%
TGTTACATACATACAATCGA+AGG + chr8_2:72658533-72658552 None:intergenic 30.0%
!! ATAACATGCATTGTTTTGTC+TGG + chr8_2:72658590-72658609 None:intergenic 30.0%
! AAGTGTTGCACATACATAAA+AGG + chr8_2:72658656-72658675 None:intergenic 30.0%
AGAAAACTGGCAGATAAATT+TGG + chr8_2:72657553-72657572 None:intergenic 30.0%
! AATTTATCTGCCAGTTTTCT+AGG - chr8_2:72657553-72657572 Msa1267430:intron 30.0%
! GTTAGCAAACATGTCATTTA+GGG + chr8_2:72657582-72657601 None:intergenic 30.0%
! AGTTAGCAAACATGTCATTT+AGG + chr8_2:72657583-72657602 None:intergenic 30.0%
TAGTTTCTATGCAAGAATGT+AGG - chr8_2:72657809-72657828 Msa1267430:intron 30.0%
GTATGTCTTAAAGTGACTAA+TGG - chr8_2:72657842-72657861 Msa1267430:intron 30.0%
TATGTTAGGATGGTCAAAAA+TGG + chr8_2:72657884-72657903 None:intergenic 30.0%
TATCATTGCAGTCATTAAGT+TGG - chr8_2:72658004-72658023 Msa1267430:intron 30.0%
AATCTATTTACCCCTTGAAT+CGG - chr8_2:72658116-72658135 Msa1267430:intron 30.0%
! TTGTGAAAATTCTAGAGATC+GGG + chr8_2:72658227-72658246 None:intergenic 30.0%
!!! AGAAAAGCATTTTCATCTGA+AGG - chr8_2:72658463-72658482 Msa1267430:intron 30.0%
TACAATCGAGAATGATGATT+AGG - chr8_2:72658490-72658509 Msa1267430:intron 30.0%
GTTACATACATACAATCGAA+GGG + chr8_2:72658532-72658551 None:intergenic 30.0%
TGTTACATACATACAATCGA+AGG + chr8_2:72658533-72658552 None:intergenic 30.0%
!! ATAACATGCATTGTTTTGTC+TGG + chr8_2:72658590-72658609 None:intergenic 30.0%
! AAGTGTTGCACATACATAAA+AGG + chr8_2:72658656-72658675 None:intergenic 30.0%
!! TTGAATTGGCCTTATGTTAG+CGG + chr8_2:72657200-72657219 None:intergenic 35.0%
AACATAAGGCCAATTCAAGA+AGG - chr8_2:72657202-72657221 Msa1267430:three_prime_UTR 35.0%
TCAACAGTTCCTTCTTGAAT+TGG + chr8_2:72657214-72657233 None:intergenic 35.0%
!!! CATCTGTTGATTTTCAGTCA+CGG - chr8_2:72657305-72657324 Msa1267430:three_prime_UTR 35.0%
TAGAACAAGAGATCAAACCA+AGG + chr8_2:72657452-72657471 None:intergenic 35.0%
GCAAATGTATTTCTTGGTAG+TGG - chr8_2:72657504-72657523 Msa1267430:CDS 35.0%
TTTAGGGAATCCTAGAAAAC+TGG + chr8_2:72657566-72657585 None:intergenic 35.0%
! GGCATGTATTTTCTTACGTT+TGG + chr8_2:72657622-72657641 None:intergenic 35.0%
! ATGCCTTTAAGTCTAAGATG+CGG - chr8_2:72657637-72657656 Msa1267430:intron 35.0%
TTGAAGTCACCCAAAATAAG+CGG - chr8_2:72657670-72657689 Msa1267430:intron 35.0%
!! AGCATTTTGCCGCTTATTTT+GGG + chr8_2:72657682-72657701 None:intergenic 35.0%
!! AAGCATTTTGCCGCTTATTT+TGG + chr8_2:72657683-72657702 None:intergenic 35.0%
AAAATAAGCGGCAAAATGCT+TGG - chr8_2:72657682-72657701 Msa1267430:intron 35.0%
AACCAAGGGAAAAGCAAAAA+AGG - chr8_2:72657719-72657738 Msa1267430:intron 35.0%
!!! TACCTTTTTTGCTTTTCCCT+TGG + chr8_2:72657724-72657743 None:intergenic 35.0%
! TTGTAAGTTGGATAGGAATG+AGG - chr8_2:72658139-72658158 Msa1267430:CDS 35.0%
AAAAGTAATACCATCAACCC+TGG - chr8_2:72658165-72658184 Msa1267430:CDS 35.0%
! CTTTTGTGATGTATTCACTG+TGG - chr8_2:72658315-72658334 Msa1267430:intron 35.0%
!! CTTCAAGATTGGTTTCTTCT+CGG - chr8_2:72658343-72658362 Msa1267430:intron 35.0%
!! TTCAAGATTGGTTTCTTCTC+GGG - chr8_2:72658344-72658363 Msa1267430:intron 35.0%
! GAAAATGCTTTTCTCTTCTC+TGG + chr8_2:72658457-72658476 None:intergenic 35.0%
! AAGCATTTTCATCTGAAGGA+TGG - chr8_2:72658467-72658486 Msa1267430:intron 35.0%
ATGTATGTGCAACACTTACA+TGG - chr8_2:72658659-72658678 Msa1267430:CDS 35.0%
!! TTGAATTGGCCTTATGTTAG+CGG + chr8_2:72657200-72657219 None:intergenic 35.0%
AACATAAGGCCAATTCAAGA+AGG - chr8_2:72657202-72657221 Msa1267430:three_prime_UTR 35.0%
TCAACAGTTCCTTCTTGAAT+TGG + chr8_2:72657214-72657233 None:intergenic 35.0%
!!! CATCTGTTGATTTTCAGTCA+CGG - chr8_2:72657305-72657324 Msa1267430:three_prime_UTR 35.0%
TAGAACAAGAGATCAAACCA+AGG + chr8_2:72657452-72657471 None:intergenic 35.0%
GCAAATGTATTTCTTGGTAG+TGG - chr8_2:72657504-72657523 Msa1267430:CDS 35.0%
TTTAGGGAATCCTAGAAAAC+TGG + chr8_2:72657566-72657585 None:intergenic 35.0%
! GGCATGTATTTTCTTACGTT+TGG + chr8_2:72657622-72657641 None:intergenic 35.0%
! ATGCCTTTAAGTCTAAGATG+CGG - chr8_2:72657637-72657656 Msa1267430:intron 35.0%
TTGAAGTCACCCAAAATAAG+CGG - chr8_2:72657670-72657689 Msa1267430:intron 35.0%
!! AGCATTTTGCCGCTTATTTT+GGG + chr8_2:72657682-72657701 None:intergenic 35.0%
!! AAGCATTTTGCCGCTTATTT+TGG + chr8_2:72657683-72657702 None:intergenic 35.0%
AAAATAAGCGGCAAAATGCT+TGG - chr8_2:72657682-72657701 Msa1267430:intron 35.0%
AACCAAGGGAAAAGCAAAAA+AGG - chr8_2:72657719-72657738 Msa1267430:intron 35.0%
!!! TACCTTTTTTGCTTTTCCCT+TGG + chr8_2:72657724-72657743 None:intergenic 35.0%
! TTGTAAGTTGGATAGGAATG+AGG - chr8_2:72658139-72658158 Msa1267430:CDS 35.0%
AAAAGTAATACCATCAACCC+TGG - chr8_2:72658165-72658184 Msa1267430:CDS 35.0%
! CTTTTGTGATGTATTCACTG+TGG - chr8_2:72658315-72658334 Msa1267430:intron 35.0%
!! CTTCAAGATTGGTTTCTTCT+CGG - chr8_2:72658343-72658362 Msa1267430:intron 35.0%
!! TTCAAGATTGGTTTCTTCTC+GGG - chr8_2:72658344-72658363 Msa1267430:intron 35.0%
! GAAAATGCTTTTCTCTTCTC+TGG + chr8_2:72658457-72658476 None:intergenic 35.0%
! AAGCATTTTCATCTGAAGGA+TGG - chr8_2:72658467-72658486 Msa1267430:intron 35.0%
ATGTATGTGCAACACTTACA+TGG - chr8_2:72658659-72658678 Msa1267430:CDS 35.0%
!! TGAATTGGCCTTATGTTAGC+GGG + chr8_2:72657199-72657218 None:intergenic 40.0%
CTACAAAGCAGGCTATCAAA+CGG - chr8_2:72657266-72657285 Msa1267430:three_prime_UTR 40.0%
CATCCGCATCTTAGACTTAA+AGG + chr8_2:72657643-72657662 None:intergenic 40.0%
! CTTTAAGTCTAAGATGCGGA+TGG - chr8_2:72657641-72657660 Msa1267430:intron 40.0%
GTTAGGATGGTCAAAAATGG+AGG + chr8_2:72657881-72657900 None:intergenic 40.0%
!! CATTGACTCGTATGTTAGGA+TGG + chr8_2:72657894-72657913 None:intergenic 40.0%
!! CTGACATTGACTCGTATGTT+AGG + chr8_2:72657898-72657917 None:intergenic 40.0%
TTCTAGCCTGAATTTACCAC+AGG - chr8_2:72657974-72657993 Msa1267430:intron 40.0%
TTCTCTCCTGTGGTAAATTC+AGG + chr8_2:72657983-72658002 None:intergenic 40.0%
! CAACTTACAACCGATTCAAG+GGG + chr8_2:72658129-72658148 None:intergenic 40.0%
! CCAACTTACAACCGATTCAA+GGG + chr8_2:72658130-72658149 None:intergenic 40.0%
! TCCAACTTACAACCGATTCA+AGG + chr8_2:72658131-72658150 None:intergenic 40.0%
! GAATCGGTTGTAAGTTGGAT+AGG - chr8_2:72658132-72658151 Msa1267430:intron 40.0%
! TAAGTTGGATAGGAATGAGG+AGG - chr8_2:72658142-72658161 Msa1267430:CDS 40.0%
! AACAACTTTTCCAGGGTTGA+TGG + chr8_2:72658178-72658197 None:intergenic 40.0%
!! CTGTGGTTTTGCTTCAAGAT+TGG - chr8_2:72658332-72658351 Msa1267430:intron 40.0%
AAATCTCCTGATGATCCTCA+AGG - chr8_2:72658389-72658408 Msa1267430:intron 40.0%
!! TGAATTGGCCTTATGTTAGC+GGG + chr8_2:72657199-72657218 None:intergenic 40.0%
CTACAAAGCAGGCTATCAAA+CGG - chr8_2:72657266-72657285 Msa1267430:three_prime_UTR 40.0%
CATCCGCATCTTAGACTTAA+AGG + chr8_2:72657643-72657662 None:intergenic 40.0%
! CTTTAAGTCTAAGATGCGGA+TGG - chr8_2:72657641-72657660 Msa1267430:intron 40.0%
GTTAGGATGGTCAAAAATGG+AGG + chr8_2:72657881-72657900 None:intergenic 40.0%
!! CATTGACTCGTATGTTAGGA+TGG + chr8_2:72657894-72657913 None:intergenic 40.0%
!! CTGACATTGACTCGTATGTT+AGG + chr8_2:72657898-72657917 None:intergenic 40.0%
TTCTAGCCTGAATTTACCAC+AGG - chr8_2:72657974-72657993 Msa1267430:intron 40.0%
TTCTCTCCTGTGGTAAATTC+AGG + chr8_2:72657983-72658002 None:intergenic 40.0%
! CAACTTACAACCGATTCAAG+GGG + chr8_2:72658129-72658148 None:intergenic 40.0%
! CCAACTTACAACCGATTCAA+GGG + chr8_2:72658130-72658149 None:intergenic 40.0%
! TCCAACTTACAACCGATTCA+AGG + chr8_2:72658131-72658150 None:intergenic 40.0%
! GAATCGGTTGTAAGTTGGAT+AGG - chr8_2:72658132-72658151 Msa1267430:intron 40.0%
! TAAGTTGGATAGGAATGAGG+AGG - chr8_2:72658142-72658161 Msa1267430:CDS 40.0%
! AACAACTTTTCCAGGGTTGA+TGG + chr8_2:72658178-72658197 None:intergenic 40.0%
!! CTGTGGTTTTGCTTCAAGAT+TGG - chr8_2:72658332-72658351 Msa1267430:intron 40.0%
AAATCTCCTGATGATCCTCA+AGG - chr8_2:72658389-72658408 Msa1267430:intron 40.0%
AGGTAGATCCCGCTAACATA+AGG - chr8_2:72657188-72657207 Msa1267430:three_prime_UTR 45.0%
ACTCGCTCAGCTTCAACTAA+AGG + chr8_2:72657238-72657257 None:intergenic 45.0%
AGTTGCTGAAGCTACAAAGC+AGG - chr8_2:72657255-72657274 Msa1267430:three_prime_UTR 45.0%
CAAACGGAAAATTGCGCAAG+CGG - chr8_2:72657282-72657301 Msa1267430:three_prime_UTR 45.0%
!! TTGCTTTTCCCTTGGTTGTC+TGG + chr8_2:72657716-72657735 None:intergenic 45.0%
GCAATGATACTTCTCTCCTG+TGG + chr8_2:72657993-72658012 None:intergenic 45.0%
CCCTTGAATCGGTTGTAAGT+TGG - chr8_2:72658127-72658146 Msa1267430:intron 45.0%
!! AGATTGGTTTCTTCTCGGGA+AGG - chr8_2:72658348-72658367 Msa1267430:intron 45.0%
TCCTGATGATCCTCAAGGAA+AGG - chr8_2:72658394-72658413 Msa1267430:intron 45.0%
ACCTTTCCTTGAGGATCATC+AGG + chr8_2:72658398-72658417 None:intergenic 45.0%
GATGATCCTCAAGGAAAGGT+TGG - chr8_2:72658398-72658417 Msa1267430:intron 45.0%
CATACAATCGAAGGGCTAAC+TGG + chr8_2:72658524-72658543 None:intergenic 45.0%
GCTCAAACCAATCACTGTAG+AGG - chr8_2:72658554-72658573 Msa1267430:CDS 45.0%
CAAACAGCCTCTACAGTGAT+TGG + chr8_2:72658564-72658583 None:intergenic 45.0%
TATGTTAGCGGGATCTACCT+GGG + chr8_2:72657188-72657207 None:intergenic 45.0%
TTATGTTAGCGGGATCTACC+TGG + chr8_2:72657189-72657208 None:intergenic 45.0%
AGGTAGATCCCGCTAACATA+AGG - chr8_2:72657188-72657207 Msa1267430:three_prime_UTR 45.0%
ACTCGCTCAGCTTCAACTAA+AGG + chr8_2:72657238-72657257 None:intergenic 45.0%
AGTTGCTGAAGCTACAAAGC+AGG - chr8_2:72657255-72657274 Msa1267430:three_prime_UTR 45.0%
CAAACGGAAAATTGCGCAAG+CGG - chr8_2:72657282-72657301 Msa1267430:three_prime_UTR 45.0%
!! TTGCTTTTCCCTTGGTTGTC+TGG + chr8_2:72657716-72657735 None:intergenic 45.0%
GCAATGATACTTCTCTCCTG+TGG + chr8_2:72657993-72658012 None:intergenic 45.0%
CCCTTGAATCGGTTGTAAGT+TGG - chr8_2:72658127-72658146 Msa1267430:intron 45.0%
!! AGATTGGTTTCTTCTCGGGA+AGG - chr8_2:72658348-72658367 Msa1267430:intron 45.0%
TCCTGATGATCCTCAAGGAA+AGG - chr8_2:72658394-72658413 Msa1267430:intron 45.0%
ACCTTTCCTTGAGGATCATC+AGG + chr8_2:72658398-72658417 None:intergenic 45.0%
GATGATCCTCAAGGAAAGGT+TGG - chr8_2:72658398-72658417 Msa1267430:intron 45.0%
CATACAATCGAAGGGCTAAC+TGG + chr8_2:72658524-72658543 None:intergenic 45.0%
GCTCAAACCAATCACTGTAG+AGG - chr8_2:72658554-72658573 Msa1267430:CDS 45.0%
CAAACAGCCTCTACAGTGAT+TGG + chr8_2:72658564-72658583 None:intergenic 45.0%
GGCTCTATACGAAGCTTTGC+AGG + chr8_2:72657337-72657356 None:intergenic 50.0%
CACAACTCACCACATCCTCA+GGG + chr8_2:72657366-72657385 None:intergenic 50.0%
ACACAACTCACCACATCCTC+AGG + chr8_2:72657367-72657386 None:intergenic 50.0%
CAGCAGTTCCAGACAACCAA+GGG - chr8_2:72657705-72657724 Msa1267430:intron 50.0%
GTCACACCAACCTTTCCTTG+AGG + chr8_2:72658407-72658426 None:intergenic 50.0%
!! CAAGGAAAGGTTGGTGTGAC+TGG - chr8_2:72658407-72658426 Msa1267430:intron 50.0%
!! AAGGTTGGTGTGACTGGAAG+TGG - chr8_2:72658413-72658432 Msa1267430:intron 50.0%
!! AGGTTGGTGTGACTGGAAGT+GGG - chr8_2:72658414-72658433 Msa1267430:intron 50.0%
ATGTTAGCGGGATCTACCTG+GGG + chr8_2:72657187-72657206 None:intergenic 50.0%
GGCTCTATACGAAGCTTTGC+AGG + chr8_2:72657337-72657356 None:intergenic 50.0%
CACAACTCACCACATCCTCA+GGG + chr8_2:72657366-72657385 None:intergenic 50.0%
ACACAACTCACCACATCCTC+AGG + chr8_2:72657367-72657386 None:intergenic 50.0%
CAGCAGTTCCAGACAACCAA+GGG - chr8_2:72657705-72657724 Msa1267430:intron 50.0%
GTCACACCAACCTTTCCTTG+AGG + chr8_2:72658407-72658426 None:intergenic 50.0%
!! CAAGGAAAGGTTGGTGTGAC+TGG - chr8_2:72658407-72658426 Msa1267430:intron 50.0%
!! AAGGTTGGTGTGACTGGAAG+TGG - chr8_2:72658413-72658432 Msa1267430:intron 50.0%
!! AGGTTGGTGTGACTGGAAGT+GGG - chr8_2:72658414-72658433 Msa1267430:intron 50.0%
TATAGAGCCCGATGACCCTG+AGG - chr8_2:72657348-72657367 Msa1267430:exon 55.0%
ACCACATCCTCAGGGTCATC+GGG + chr8_2:72657358-72657377 None:intergenic 55.0%
CACCACATCCTCAGGGTCAT+CGG + chr8_2:72657359-72657378 None:intergenic 55.0%
GCAGCAGTTCCAGACAACCA+AGG - chr8_2:72657704-72657723 Msa1267430:intron 55.0%
GGTGTGACTGGAAGTGGGAA+AGG - chr8_2:72658419-72658438 Msa1267430:intron 55.0%
TATAGAGCCCGATGACCCTG+AGG - chr8_2:72657348-72657367 Msa1267430:exon 55.0%
ACCACATCCTCAGGGTCATC+GGG + chr8_2:72657358-72657377 None:intergenic 55.0%
CACCACATCCTCAGGGTCAT+CGG + chr8_2:72657359-72657378 None:intergenic 55.0%
GCAGCAGTTCCAGACAACCA+AGG - chr8_2:72657704-72657723 Msa1267430:intron 55.0%
GGTGTGACTGGAAGTGGGAA+AGG - chr8_2:72658419-72658438 Msa1267430:intron 55.0%
GCCCGATGACCCTGAGGATG+TGG - chr8_2:72657354-72657373 Msa1267430:exon 65.0%
GCCCGATGACCCTGAGGATG+TGG - chr8_2:72657354-72657373 Msa1267430:exon 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 72657187 72658691 72657187 ID=Msa1267430;Name=Msa1267430
chr8_2 mRNA 72657187 72658691 72657187 ID=Msa1267430-mRNA-1;Parent=Msa1267430;Name=Msa1267430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.66|1|1|1|3|180|159
chr8_2 exon 72657187 72657528 72657187 ID=Msa1267430-mRNA-1:exon:24635;Parent=Msa1267430-mRNA-1
chr8_2 exon 72658138 72658266 72658138 ID=Msa1267430-mRNA-1:exon:24634;Parent=Msa1267430-mRNA-1
chr8_2 exon 72658503 72658691 72658503 ID=Msa1267430-mRNA-1:exon:24633;Parent=Msa1267430-mRNA-1
chr8_2 CDS 72658503 72658691 72658503 ID=Msa1267430-mRNA-1:cds;Parent=Msa1267430-mRNA-1
chr8_2 CDS 72658138 72658266 72658138 ID=Msa1267430-mRNA-1:cds;Parent=Msa1267430-mRNA-1
chr8_2 CDS 72657367 72657528 72657367 ID=Msa1267430-mRNA-1:cds;Parent=Msa1267430-mRNA-1
chr8_2 three_prime_UTR 72657187 72657366 72657187 ID=Msa1267430-mRNA-1:three_prime_utr;Parent=Msa1267430-mRNA-1
Gene Sequence

>Msa1267430

CAGGTAGATCCCGCTAACATAAGGCCAATTCAAGAAGGAACTGTTGATCCTTTAGTTGAAGCTGAGCGAGTTGCTGAAGCTACAAAGCAGGCTATCAAACGGAAAATTGCGCAAGCGGCATCTGTTGATTTTCAGTCACGGAGTCTACCTGCAAAGCTTCGTATAGAGCCCGATGACCCTGAGGATGTGAAAGTTACCAAACGTAAGAAAATACATGCCTTTAAGTCTAAGATGCGGATGGAACAACTTGAAGTCACCCAAAATAAGCGGCAAAATGCTTGGCAGCAGTTCCAGACAACCAAGGGAAAAGCAAAAAAGATTGGTTTCTTCTCGGGAAGGAAGCGTGAGAGTATTTTTAAATCTCCTGATGATCCTCAAGGAAAGGTTGGTGTGACTGGAAGTGGGAAAGGTTTGACAGAGTTCCAGAGAAGAGAAAAGCATTTTCATCTGAAGGATGGTACAATCGAGAATGATGATTAG

Protein sequence

>Msa1267430

QVDPANIRPIQEGTVDPLVEAERVAEATKQAIKRKIAQAASVDFQSRSLPAKLRIEPDDPEDVKVTKRKKIHAFKSKMRMEQLEVTQNKRQNAWQQFQTTKGKAKKIGFFSGRKRESIFKSPDDPQGKVGVTGSGKGLTEFQRREKHFHLKDGTIENDD*