AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0216240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0216240 MtrunA17_Chr2g0317761 94.721 341 11 2 1 334 1 341 0.0 624
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0216240 AT5G53800.1 73.653 167 44 0 168 334 185 351 8.53e-88 268

Find 107 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCTGGTTACAGATTTA+TGG 0.131415 2_1:+61972391 Msa0216240:intron
CTTCCTACGGCGTCGTTTAT+CGG 0.212866 2_1:-61968517 None:intergenic
ACTAATTTATGGGGAAAGTA+TGG 0.215379 2_1:+61968837 Msa0216240:CDS
ACTTATTGTGGATATGAATT+AGG 0.218029 2_1:+61973452 Msa0216240:three_prime_UTR
AACTCATTTCATGGATATTA+TGG 0.223435 2_1:+61973507 Msa0216240:three_prime_UTR
AAAATGAAAATTTCACATTA+AGG 0.227327 2_1:-61973833 None:intergenic
AATGAAGAAGAAGGAGAAAA+AGG 0.227339 2_1:+61968791 Msa0216240:CDS
TGGTTCGGAGTCGGAGTATT+CGG 0.235691 2_1:+61968614 Msa0216240:CDS
TTACTTGGACTGATCGAAAT+TGG 0.258824 2_1:+61973744 Msa0216240:three_prime_UTR
ATATGGAGCATCTGTCTAAT+TGG 0.263850 2_1:+61972065 Msa0216240:CDS
CATCAGGGTCCAACCTTCTC+TGG 0.319994 2_1:-61973403 None:intergenic
AAGGTGCTGTGACTAATTTA+TGG 0.342345 2_1:+61968826 Msa0216240:CDS
ATTATGACAAACTCATTTCA+TGG 0.359860 2_1:+61973498 Msa0216240:three_prime_UTR
GAGAGAGGAAGGAGAGGAAG+AGG 0.365433 2_1:+61968652 Msa0216240:CDS
GGTTCGGAGTCGGAGTATTC+GGG 0.365915 2_1:+61968615 Msa0216240:CDS
GATATATGGCCTGGACAGTT+TGG 0.369205 2_1:-61973696 None:intergenic
CATGGATATTATGGTGTCTT+GGG 0.370504 2_1:+61973516 Msa0216240:three_prime_UTR
ACTGTCTACACGGCAGCATC+AGG 0.397203 2_1:-61973419 None:intergenic
GCGGCCTTGTGCATCTTACT+TGG 0.397472 2_1:+61973729 Msa0216240:three_prime_UTR
AGGTGCTGTGACTAATTTAT+GGG 0.400642 2_1:+61968827 Msa0216240:CDS
AGAAGCGAAGGAGGAGAGAG+AGG 0.415874 2_1:+61968679 Msa0216240:CDS
TCATGGATATTATGGTGTCT+TGG 0.418203 2_1:+61973515 Msa0216240:three_prime_UTR
GCCAACCATGCGGTGAACTC+TGG 0.432000 2_1:-61971640 None:intergenic
TCGAGAAACGTTAACGGTAA+TGG 0.435120 2_1:+61968333 Msa0216240:CDS
GGAAGAGGAAGGAGAAGCGA+AGG 0.437488 2_1:+61968667 Msa0216240:CDS
TTGAAAACTGTTCGTTCCTT+AGG 0.443550 2_1:-61972692 None:intergenic
AGAGGAAGGAGAAGCGAAGG+AGG 0.446107 2_1:+61968670 Msa0216240:CDS
GGAGAGTGAAGGAGAGAGGA+AGG 0.448282 2_1:+61968641 Msa0216240:CDS
GATAGCTTTGAAGCGTGAAA+TGG 0.450247 2_1:+61973093 Msa0216240:CDS
TATGGAGCATCTGTCTAATT+GGG 0.451352 2_1:+61972066 Msa0216240:CDS
GTACAAGCTTGGCAACTTTG+AGG 0.458033 2_1:+61973280 Msa0216240:CDS
GCCGTCGTCTTTCTCTGAGC+TGG 0.460035 2_1:-61968376 None:intergenic
TGCGGTGAACTCTGGACGCT+TGG 0.462609 2_1:-61971632 None:intergenic
AGAGAAGAAGAGAAGGAAGA+AGG 0.462903 2_1:+61968731 Msa0216240:CDS
AGAGGGAGGAAGAGAAGAGA+AGG 0.464264 2_1:+61968697 Msa0216240:CDS
TGCTTACTACAGGCGTCAAA+TGG 0.465748 2_1:+61972634 Msa0216240:CDS
TTTGGAGATGCTCGCTGACT+TGG 0.467587 2_1:-61973678 None:intergenic
GAGAGAAAGAGAAGAAGAGA+AGG 0.469323 2_1:+61968724 Msa0216240:CDS
GCGAAGGAGGAGAGAGAGGG+AGG 0.470950 2_1:+61968683 Msa0216240:CDS
TGAATCCGAACGGTCTGGTT+CGG 0.471389 2_1:+61968599 Msa0216240:CDS
GAGGAAGGAGAGGAAGAGGA+AGG 0.472491 2_1:+61968656 Msa0216240:CDS
CAGTGATGATGAATCGGATT+CGG 0.475281 2_1:+61968563 Msa0216240:CDS
GAAGCGAAGGAGGAGAGAGA+GGG 0.475698 2_1:+61968680 Msa0216240:CDS
ATAAACGACGCCGTAGGAAG+AGG 0.476653 2_1:+61968520 Msa0216240:CDS
GGGAGGAAGAGAAGAGAAGG+AGG 0.478439 2_1:+61968700 Msa0216240:CDS
CAAAGTTGCCAAGCTTGTAC+TGG 0.483292 2_1:-61973277 None:intergenic
ATACAGCAGTGATGATGAAT+CGG 0.488450 2_1:+61968557 Msa0216240:CDS
ACGGCGTCGTTTATCGGAAT+CGG 0.494732 2_1:-61968511 None:intergenic
TGAAAGAGCAAGCACAACTC+AGG 0.501356 2_1:+61973240 Msa0216240:CDS
TTGATAGCACACTGTAGAAA+AGG 0.502977 2_1:-61973604 None:intergenic
CTCCGTCGAAAAGAGATTCA+AGG 0.503180 2_1:+61968403 Msa0216240:CDS
CTAATTTATGGGGAAAGTAT+GGG 0.505958 2_1:+61968838 Msa0216240:CDS
AAAATGTCGAGAAACGTTAA+CGG 0.506060 2_1:+61968327 Msa0216240:exon
GTGAAGGAGAGAGGAAGGAG+AGG 0.507055 2_1:+61968646 Msa0216240:CDS
TGAGCTACTATGCTTTCTAT+CGG 0.516491 2_1:-61968460 None:intergenic
AGGAGAAAGAAGAAGAGAGA+AGG 0.516908 2_1:+61968751 Msa0216240:CDS
GGAGTCGGAGTATTCGGGTT+CGG 0.516960 2_1:+61968620 Msa0216240:CDS
AGCGATGAATCCGAACGGTC+TGG 0.517575 2_1:+61968594 Msa0216240:CDS
GGGATATAATATGCTGTGGA+TGG 0.518454 2_1:+61973536 Msa0216240:three_prime_UTR
CGACTCCGAACCAGACCGTT+CGG 0.519381 2_1:-61968604 None:intergenic
AGGCCATATATCCTATGAAA+AGG 0.520025 2_1:+61973707 Msa0216240:three_prime_UTR
GGATATAATATGCTGTGGAT+GGG 0.524338 2_1:+61973537 Msa0216240:three_prime_UTR
AGCACAACTCAGGGAGGAGA+TGG 0.524634 2_1:+61973250 Msa0216240:CDS
CGTTAACGGTAATGGTGCTC+CGG 0.531901 2_1:+61968341 Msa0216240:CDS
TTATAAGAAGGTTCAGCCTA+AGG 0.534176 2_1:+61972676 Msa0216240:CDS
CGAGCATCTCCAAACTGTCC+AGG 0.536605 2_1:+61973687 Msa0216240:three_prime_UTR
TTGAAGCGTGAAATGGAAAG+TGG 0.543422 2_1:+61973100 Msa0216240:CDS
TCCAGAGTTCACCGCATGGT+TGG 0.557065 2_1:+61971639 Msa0216240:CDS
ACAGTCTTGATGCTTACTAC+AGG 0.557804 2_1:+61972624 Msa0216240:CDS
GATATAATATGCTGTGGATG+GGG 0.560278 2_1:+61973538 Msa0216240:three_prime_UTR
ATGGCTTACCAGTACAAGCT+TGG 0.568371 2_1:+61973269 Msa0216240:CDS
CTGCTGCTGCAATCCAGAGA+AGG 0.573865 2_1:+61973390 Msa0216240:CDS
ATGGTTGGCAGAAGTTAAGC+TGG 0.573991 2_1:+61971654 Msa0216240:CDS
TGCTGCAATCCAGAGAAGGT+TGG 0.578757 2_1:+61973394 Msa0216240:CDS
GTCGTCTTTCTCTGAGCTGG+TGG 0.580374 2_1:-61968373 None:intergenic
ATAGATGTGTTGCCTTGTGA+TGG 0.587765 2_1:+61973634 Msa0216240:three_prime_UTR
TGTGGATATGAATTAGGTGA+TGG 0.588430 2_1:+61973458 Msa0216240:three_prime_UTR
GAAAGAGCAAGCACAACTCA+GGG 0.590934 2_1:+61973241 Msa0216240:CDS
CTGTCTACACGGCAGCATCA+GGG 0.591136 2_1:-61973418 None:intergenic
TTCTGGTTACAGATTTATGG+AGG 0.597616 2_1:+61972394 Msa0216240:intron
CGAACGGTCTGGTTCGGAGT+CGG 0.599371 2_1:+61968605 Msa0216240:CDS
GTGGATATGAATTAGGTGAT+GGG 0.602212 2_1:+61973459 Msa0216240:three_prime_UTR
GACGTGATTTCCTCTTCCTA+CGG 0.602909 2_1:-61968530 None:intergenic
GTTCGGAGAGTGAAGGAGAG+AGG 0.618767 2_1:+61968637 Msa0216240:CDS
GTGTAGGACATAACTTATTG+TGG 0.628359 2_1:+61973440 Msa0216240:three_prime_UTR
TCAATGATGAAGAACAGCGC+AGG 0.631968 2_1:+61972711 Msa0216240:CDS
TATTCGGGTTCGGAGAGTGA+AGG 0.634912 2_1:+61968630 Msa0216240:CDS
ACAGTATGCACTATGTTCTG+AGG 0.640263 2_1:-61973899 None:intergenic
TTATTAGAGAAACTGATATG+TGG 0.644513 2_1:+61968862 Msa0216240:CDS
ATTCCGATAAACGACGCCGT+AGG 0.645227 2_1:+61968514 Msa0216240:CDS
CAGTCCAAGTAAGATGCACA+AGG 0.648108 2_1:-61973733 None:intergenic
TATGTCCTACACTGTCTACA+CGG 0.653486 2_1:-61973429 None:intergenic
GGTGCTGTGACTAATTTATG+GGG 0.653975 2_1:+61968828 Msa0216240:CDS
TCTTGGGATATAATATGCTG+TGG 0.656062 2_1:+61973532 Msa0216240:three_prime_UTR
ACCAGCTCAGAGAAAGACGA+CGG 0.656673 2_1:+61968375 Msa0216240:CDS
AGCGTCCAGAGTTCACCGCA+TGG 0.660448 2_1:+61971635 Msa0216240:CDS
GCGTGAAATGGAAAGTGGAA+TGG 0.661059 2_1:+61973105 Msa0216240:CDS
AAGACAAAACTTCCATCACA+AGG 0.671610 2_1:-61973646 None:intergenic
CTGTAGAAAAGGCGTCAATG+TGG 0.671743 2_1:-61973593 None:intergenic
CCATATATCCTATGAAAAGG+CGG 0.674318 2_1:+61973710 Msa0216240:three_prime_UTR
TGGATATGAATTAGGTGATG+GGG 0.674471 2_1:+61973460 Msa0216240:three_prime_UTR
CAGAGAGCGATGAATCCGAA+CGG 0.693318 2_1:+61968589 Msa0216240:CDS
AGAGCAAGCACAACTCAGGG+AGG 0.714698 2_1:+61973244 Msa0216240:CDS
CTTAACTTCTGCCAACCATG+CGG 0.728245 2_1:-61971650 None:intergenic
ATGAGTTTGTCATAATGACA+TGG 0.740021 2_1:-61973491 None:intergenic
TGCTGCCGTGTAGACAGTGT+AGG 0.744540 2_1:+61973424 Msa0216240:exon
GTAGGAAGAGGAAATCACGT+CGG 0.790615 2_1:+61968532 Msa0216240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAAAAGAAAATATAATAT+AGG - chr2_1:61972935-61972954 None:intergenic 10.0%
!! TAAGATAACTTATTTAATCT+AGG + chr2_1:61969906-61969925 Msa0216240:intron 15.0%
!! AAGATAACTTATTTAATCTA+GGG + chr2_1:61969907-61969926 Msa0216240:intron 15.0%
!! TAACTTATTTAATGTATTGT+AGG + chr2_1:61970294-61970313 Msa0216240:intron 15.0%
!! AACTTATTTAATGTATTGTA+GGG + chr2_1:61970295-61970314 Msa0216240:intron 15.0%
!!! AGTTGATAGATTTAAAATAT+AGG + chr2_1:61970350-61970369 Msa0216240:intron 15.0%
!!! TCATATGTTTAATTTTCTTA+TGG + chr2_1:61971369-61971388 Msa0216240:intron 15.0%
!! AAAATACAGCAAATTAAAAT+TGG - chr2_1:61972036-61972055 None:intergenic 15.0%
!! TATGTTTATATTTACTCTTA+AGG + chr2_1:61972224-61972243 Msa0216240:intron 15.0%
!!! TTTTGTTAATTAATGACAAA+AGG + chr2_1:61973172-61973191 Msa0216240:intron 15.0%
!! AAAATGAAAATTTCACATTA+AGG - chr2_1:61973836-61973855 None:intergenic 15.0%
!! ATTGAATTATCAGAGTATAA+TGG + chr2_1:61968941-61968960 Msa0216240:intron 20.0%
!!! AGAAGTATAAGTAATAACTA+GGG + chr2_1:61969607-61969626 Msa0216240:intron 20.0%
!!! AGAAGTATAAGTAATAACTA+GGG + chr2_1:61969607-61969626 Msa0216240:intron 20.0%
!! TGAAAACATAGAATATACAT+CGG + chr2_1:61969973-61969992 Msa0216240:intron 20.0%
!! TTAGACTGGAAATTATATTT+AGG - chr2_1:61970235-61970254 None:intergenic 20.0%
!! GAATAATAATAACTAGTAAC+AGG + chr2_1:61970713-61970732 Msa0216240:intron 20.0%
!! AGGATAACTTATATAATGTA+GGG + chr2_1:61970944-61970963 Msa0216240:intron 20.0%
!!! AGTTGATATAGTTTAAACAT+AGG + chr2_1:61970997-61971016 Msa0216240:intron 20.0%
!!! TTTAGCAAAATTTTATATCG+AGG + chr2_1:61971073-61971092 Msa0216240:intron 20.0%
!!! TTAATTTGCTGTATTTTAAC+AGG + chr2_1:61972039-61972058 Msa0216240:intron 20.0%
!!! TGTATTTTAACAGGTAAATA+TGG + chr2_1:61972048-61972067 Msa0216240:intron 20.0%
!! AAAATTAAGTAAAAGAGAGA+AGG + chr2_1:61972141-61972160 Msa0216240:intron 20.0%
!! TATTCCTATTCATAAAAATG+AGG - chr2_1:61972490-61972509 None:intergenic 20.0%
!! ATCATTATTGTGTATTCATT+TGG + chr2_1:61972565-61972584 Msa0216240:intron 20.0%
!! TCATTATTGTGTATTCATTT+GGG + chr2_1:61972566-61972585 Msa0216240:intron 20.0%
!! TAACTAATGTAATCTTAACT+TGG + chr2_1:61972755-61972774 Msa0216240:intron 20.0%
! TTATTAGAGAAACTGATATG+TGG + chr2_1:61968862-61968881 Msa0216240:CDS 25.0%
! AGTATAATGGTTGAATTATG+TGG + chr2_1:61968954-61968973 Msa0216240:intron 25.0%
! ATAGTGTATTATGAAGTTCT+TGG + chr2_1:61968983-61969002 Msa0216240:intron 25.0%
!!! TGGTTAATGTTTTGTTGATT+TGG + chr2_1:61969003-61969022 Msa0216240:intron 25.0%
! TTGTATGTACTGAAATATCA+TGG + chr2_1:61969044-61969063 Msa0216240:intron 25.0%
! TGTATGTACTGAAATATCAT+GGG + chr2_1:61969045-61969064 Msa0216240:intron 25.0%
! TTGTTAGTGTATAAGATTGT+AGG + chr2_1:61969095-61969114 Msa0216240:intron 25.0%
! AATATTAACAGCATTCAGAT+TGG + chr2_1:61969143-61969162 Msa0216240:intron 25.0%
! TTACATGATTCACATACAAA+TGG - chr2_1:61969581-61969600 None:intergenic 25.0%
!! GAGAAGTATAAGTAATAACT+AGG + chr2_1:61969606-61969625 Msa0216240:intron 25.0%
! TATAAGTAATAACTAGGGAT+AGG + chr2_1:61969612-61969631 Msa0216240:intron 25.0%
!! GAGAAGTATAAGTAATAACT+AGG + chr2_1:61969606-61969625 Msa0216240:intron 25.0%
! TAAAATATAGGAATATGCTC+CGG + chr2_1:61970362-61970381 Msa0216240:intron 25.0%
! TGCAATAAACTATTAACAAC+CGG - chr2_1:61970384-61970403 None:intergenic 25.0%
!! ACAATCTAAAGAGGAATTTT+AGG - chr2_1:61970487-61970506 None:intergenic 25.0%
!!! GTAGAATTTGTTATTGTAGA+AGG + chr2_1:61970586-61970605 Msa0216240:intron 25.0%
!!! TTTCATTTTTTGTCCTGTTT+TGG - chr2_1:61970761-61970780 None:intergenic 25.0%
! GCTGTAAAGAATCTTTATTA+TGG + chr2_1:61970821-61970840 Msa0216240:intron 25.0%
!! ATTGCAAATTGTTGTTGATA+TGG - chr2_1:61970857-61970876 None:intergenic 25.0%
! CAGGATAACTTATATAATGT+AGG + chr2_1:61970943-61970962 Msa0216240:intron 25.0%
! ATCAAGTCAACATGTTAAAA+TGG - chr2_1:61971342-61971361 None:intergenic 25.0%
!!! AACATGTTGACTTGATATTA+TGG + chr2_1:61971346-61971365 Msa0216240:intron 25.0%
! TTTAAGTACCTACATTCTAA+AGG + chr2_1:61971470-61971489 Msa0216240:intron 25.0%
! CATTAATATCCTTTGAACTA+GGG + chr2_1:61971566-61971585 Msa0216240:intron 25.0%
!! ATCTTATTTCCAGTATATGT+CGG + chr2_1:61971850-61971869 Msa0216240:intron 25.0%
!! ATCTTTCACCCTTTATATTT+TGG + chr2_1:61971969-61971988 Msa0216240:intron 25.0%
! CTAGAATGCCAAAATATAAA+GGG - chr2_1:61971980-61971999 None:intergenic 25.0%
! ACTAGAATGCCAAAATATAA+AGG - chr2_1:61971981-61972000 None:intergenic 25.0%
!!! AATTTTTTTCTTTGAGTTGC+AGG - chr2_1:61972127-61972146 None:intergenic 25.0%
! AGGAAAGGAAAAAAAAAAAG+TGG + chr2_1:61972170-61972189 Msa0216240:intron 25.0%
! TTATTCACTTATTCATCACT+AGG + chr2_1:61972317-61972336 Msa0216240:intron 25.0%
! GTTAATTTCTCTCTAATTTC+TGG + chr2_1:61972377-61972396 Msa0216240:intron 25.0%
!!! AATTTCTGGTTACAGATTTA+TGG + chr2_1:61972391-61972410 Msa0216240:intron 25.0%
!!! TTGTCCTCATTTTTATGAAT+AGG + chr2_1:61972483-61972502 Msa0216240:intron 25.0%
! CAAATGGTTTAATGTTTATG+TGG + chr2_1:61972593-61972612 Msa0216240:intron 25.0%
! AATGGAAAAAGAGATGAAAA+AGG + chr2_1:61972652-61972671 Msa0216240:CDS 25.0%
! ATGGAAAAAGAGATGAAAAA+GGG + chr2_1:61972653-61972672 Msa0216240:CDS 25.0%
!!! ATCTTAACTTGGTTTTCTTT+TGG + chr2_1:61972766-61972785 Msa0216240:intron 25.0%
! TAAACAATAGTAAAGCATGT+AGG - chr2_1:61972835-61972854 None:intergenic 25.0%
!! ATATAGGTAGACTTTTACAA+TGG - chr2_1:61972919-61972938 None:intergenic 25.0%
!!! CTTTCATGATCATTTTTCAA+TGG + chr2_1:61973017-61973036 Msa0216240:intron 25.0%
!! ATTTTGTGCAATAATTTTGC+AGG + chr2_1:61973208-61973227 Msa0216240:intron 25.0%
! AAAAAGTTTGCAGCAAATTT+AGG - chr2_1:61973359-61973378 None:intergenic 25.0%
! ACTTATTGTGGATATGAATT+AGG + chr2_1:61973452-61973471 Msa0216240:three_prime_UTR 25.0%
! ATTATGACAAACTCATTTCA+TGG + chr2_1:61973498-61973517 Msa0216240:three_prime_UTR 25.0%
! AACTCATTTCATGGATATTA+TGG + chr2_1:61973507-61973526 Msa0216240:three_prime_UTR 25.0%
! TATGGTTTAGAAAAAAAGTG+AGG + chr2_1:61973876-61973895 Msa0216240:three_prime_UTR 25.0%
AAAATGTCGAGAAACGTTAA+CGG + chr2_1:61968327-61968346 Msa0216240:exon 30.0%
GAAACGAAAAATGAAGAAGA+AGG + chr2_1:61968782-61968801 Msa0216240:CDS 30.0%
AATGAAGAAGAAGGAGAAAA+AGG + chr2_1:61968791-61968810 Msa0216240:CDS 30.0%
ACTAATTTATGGGGAAAGTA+TGG + chr2_1:61968837-61968856 Msa0216240:CDS 30.0%
! CTAATTTATGGGGAAAGTAT+GGG + chr2_1:61968838-61968857 Msa0216240:CDS 30.0%
! GATATGTGGTAAGAATTTTC+TGG + chr2_1:61968876-61968895 Msa0216240:intron 30.0%
!! TGGAATGTGAAAGTTTTTAG+TGG + chr2_1:61969070-61969089 Msa0216240:intron 30.0%
TTGATTGAAAGATGTCAGAT+TGG + chr2_1:61969120-61969139 Msa0216240:intron 30.0%
GTTATTGTTATGCTTTGATC+CGG + chr2_1:61969165-61969184 Msa0216240:intron 30.0%
ATCCAGATCATGATATAACA+TGG - chr2_1:61969505-61969524 None:intergenic 30.0%
! TTAAAAGCATGTTCTGGATT+GGG - chr2_1:61969558-61969577 None:intergenic 30.0%
! AAATGGTTAAAAGCATGTTC+TGG - chr2_1:61969564-61969583 None:intergenic 30.0%
GTATGTGAATCATGTAAGAT+TGG + chr2_1:61969584-61969603 Msa0216240:intron 30.0%
GTATGTGAATCATGTAAGAT+TGG + chr2_1:61969584-61969603 Msa0216240:intron 30.0%
TATAAGTAATAACTAGGGAC+AGG + chr2_1:61969670-61969689 Msa0216240:intron 30.0%
! GCTGTAGAAAATCTCTATTT+TGG + chr2_1:61969781-61969800 Msa0216240:intron 30.0%
!! GTTGCAAAGTGTTGTTAAAA+TGG - chr2_1:61969817-61969836 None:intergenic 30.0%
TTACACTGGAAACTATATTC+AGG - chr2_1:61969852-61969871 None:intergenic 30.0%
TAGCAGCAGAAATTAATATG+TGG + chr2_1:61969934-61969953 Msa0216240:intron 30.0%
GTTTATTGTAGTCGTTATCT+CGG + chr2_1:61970005-61970024 Msa0216240:intron 30.0%
TTTATTGTAGTCGTTATCTC+GGG + chr2_1:61970006-61970025 Msa0216240:intron 30.0%
TACAACCTAATGCTGTATAA+GGG + chr2_1:61970142-61970161 Msa0216240:intron 30.0%
TAATTTCCAGTCTAATCTCT+TGG + chr2_1:61970240-61970259 Msa0216240:intron 30.0%
AGCAGCAGAAATTCATATAT+AGG + chr2_1:61970323-61970342 Msa0216240:intron 30.0%
CACTAGCAAAATTTACATCT+AGG + chr2_1:61970423-61970442 Msa0216240:intron 30.0%
TTAGATTGTTAGCATGTGAT+TGG + chr2_1:61970498-61970517 Msa0216240:intron 30.0%
GGACATCCTAATAATATAGA+GGG + chr2_1:61970530-61970549 Msa0216240:intron 30.0%
GACATCCTAATAATATAGAG+GGG + chr2_1:61970531-61970550 Msa0216240:intron 30.0%
GCATGTGAATCATGTAATAT+TGG + chr2_1:61970686-61970705 Msa0216240:intron 30.0%
TTAAACTGGAACCTATATTC+AGG - chr2_1:61970886-61970905 None:intergenic 30.0%
GTTCCAGTTTAATAATGTCT+TGG + chr2_1:61970894-61970913 Msa0216240:intron 30.0%
CTTCCAAGACATTATTAAAC+TGG - chr2_1:61970900-61970919 None:intergenic 30.0%
AATAATGTCTTGGAAGATGA+AGG + chr2_1:61970904-61970923 Msa0216240:intron 30.0%
!! TCAGTTTGTTAGTATGTGAT+TGG + chr2_1:61971156-61971175 Msa0216240:intron 30.0%
AGTATGTGATTGGATATTGA+AGG + chr2_1:61971166-61971185 Msa0216240:intron 30.0%
! AAATCATCAGCCTGTATTTT+TGG + chr2_1:61971505-61971524 Msa0216240:intron 30.0%
GCATTAATATCCTTTGAACT+AGG + chr2_1:61971565-61971584 Msa0216240:intron 30.0%
TTTGCAAAAACTCAAACTAG+TGG + chr2_1:61971765-61971784 Msa0216240:intron 30.0%
TAATCTGTGTGAAGAAATCA+AGG - chr2_1:61971827-61971846 None:intergenic 30.0%
! TGCATATTTTTCTTGCCTAT+TGG + chr2_1:61971910-61971929 Msa0216240:intron 30.0%
TATTATGCACTTCTATTGAG+AGG - chr2_1:61971950-61971969 None:intergenic 30.0%
ATTTGCATGTCATGTTTACA+TGG + chr2_1:61972003-61972022 Msa0216240:intron 30.0%
TTAAGTAAAAGAGAGAAGGA+TGG + chr2_1:61972145-61972164 Msa0216240:intron 30.0%
!! TATTCATTTGGGTTGACAAA+TGG + chr2_1:61972577-61972596 Msa0216240:intron 30.0%
GATGAAAAAGGGTTATAAGA+AGG + chr2_1:61972664-61972683 Msa0216240:CDS 30.0%
CAAATTGCATAAAAGTGATC+TGG - chr2_1:61973141-61973160 None:intergenic 30.0%
! TGCAAACTTTTTACCACTAT+AGG + chr2_1:61973367-61973386 Msa0216240:intron 30.0%
ATGAGTTTGTCATAATGACA+TGG - chr2_1:61973494-61973513 None:intergenic 30.0%
! TTCCTTGAATCTCTTTTCGA+CGG - chr2_1:61968408-61968427 None:intergenic 35.0%
TGAGCTACTATGCTTTCTAT+CGG - chr2_1:61968463-61968482 None:intergenic 35.0%
! ATACAGCAGTGATGATGAAT+CGG + chr2_1:61968557-61968576 Msa0216240:CDS 35.0%
AAGAAGGAGAAAAAGGAAAG+AGG + chr2_1:61968798-61968817 Msa0216240:CDS 35.0%
AGAAGGAGAAAAAGGAAAGA+GGG + chr2_1:61968799-61968818 Msa0216240:CDS 35.0%
AAAAAGGAAAGAGGGAAGAA+AGG + chr2_1:61968807-61968826 Msa0216240:CDS 35.0%
!! AAGGTGCTGTGACTAATTTA+TGG + chr2_1:61968826-61968845 Msa0216240:CDS 35.0%
! AGGTGCTGTGACTAATTTAT+GGG + chr2_1:61968827-61968846 Msa0216240:CDS 35.0%
GTACTGAAATATCATGGGAT+TGG + chr2_1:61969050-61969069 Msa0216240:intron 35.0%
CAAACTCGTGATTCAGTTTA+AGG - chr2_1:61969339-61969358 None:intergenic 35.0%
AGTTTGCGATGATTTCTTCT+AGG + chr2_1:61969353-61969372 Msa0216240:intron 35.0%
GTTTGCGATGATTTCTTCTA+GGG + chr2_1:61969354-61969373 Msa0216240:intron 35.0%
!! TTCTTCTAGGGTTTCTCATA+TGG + chr2_1:61969366-61969385 Msa0216240:intron 35.0%
AAGAGAGAGCTGTTCAATTA+GGG - chr2_1:61969395-61969414 None:intergenic 35.0%
TAAGAGAGAGCTGTTCAATT+AGG - chr2_1:61969396-61969415 None:intergenic 35.0%
TAATTGAACAGCTCTCTCTT+AGG + chr2_1:61969395-61969414 Msa0216240:intron 35.0%
TTGATGTGATCATCATCTCA+TGG + chr2_1:61969432-61969451 Msa0216240:intron 35.0%
CTCCATGTTATATCATGATC+TGG + chr2_1:61969500-61969519 Msa0216240:intron 35.0%
! GTTAAAAGCATGTTCTGGAT+TGG - chr2_1:61969559-61969578 None:intergenic 35.0%
TGTTCTCTTGACATCCAAAT+AGG + chr2_1:61969702-61969721 Msa0216240:intron 35.0%
! CATTTCACGTTTTGCCTATT+TGG - chr2_1:61969719-61969738 None:intergenic 35.0%
TTTCTACAGCATACTGAAAC+TGG - chr2_1:61969771-61969790 None:intergenic 35.0%
TAGTTTCCAGTGTAATCTCT+TGG + chr2_1:61969857-61969876 Msa0216240:intron 35.0%
TGTAATCTCTTGGAAGATGA+AGG + chr2_1:61969867-61969886 Msa0216240:intron 35.0%
TTATTGTAGTCGTTATCTCG+GGG + chr2_1:61970007-61970026 Msa0216240:intron 35.0%
! TTAGATGAAGCACCTTGTTA+AGG - chr2_1:61970036-61970055 None:intergenic 35.0%
TTAGATTGCTAGCATGTGAT+TGG + chr2_1:61970109-61970128 Msa0216240:intron 35.0%
AGCATGTGATTGGATATTGA+AGG + chr2_1:61970119-61970138 Msa0216240:intron 35.0%
GTACAACCTAATGCTGTATA+AGG + chr2_1:61970141-61970160 Msa0216240:intron 35.0%
CTAAACCCTTATACAGCATT+AGG - chr2_1:61970150-61970169 None:intergenic 35.0%
TGCTGTATAAGGGTTTAGAA+AGG + chr2_1:61970152-61970171 Msa0216240:intron 35.0%
GCTGTATAAGGGTTTAGAAA+GGG + chr2_1:61970153-61970172 Msa0216240:intron 35.0%
TTGCAGTCTTTATCTTGTGA+TGG + chr2_1:61970399-61970418 Msa0216240:intron 35.0%
CACATGCTAACAATCTAAAG+AGG - chr2_1:61970496-61970515 None:intergenic 35.0%
AGCATGTGATTGGATATTGA+AGG + chr2_1:61970119-61970138 Msa0216240:intron 35.0%
GCATGTGATTGGATATTGAA+GGG + chr2_1:61970120-61970139 Msa0216240:intron 35.0%
GGGACATCCTAATAATATAG+AGG + chr2_1:61970529-61970548 Msa0216240:intron 35.0%
CTAGACCCCTCTATATTATT+AGG - chr2_1:61970539-61970558 None:intergenic 35.0%
CTAATAATATAGAGGGGTCT+AGG + chr2_1:61970537-61970556 Msa0216240:intron 35.0%
GCAATTTCTCTCCTGAATAT+AGG + chr2_1:61970872-61970891 Msa0216240:intron 35.0%
GCAATACACATGAATTTCTG+AGG - chr2_1:61970977-61970996 None:intergenic 35.0%
TTTGCTAAACTGTAAGTCAC+TGG - chr2_1:61971062-61971081 None:intergenic 35.0%
! TAGGTCTTTAGCTTCTAAAC+AGG - chr2_1:61971110-61971129 None:intergenic 35.0%
GTTTAGAAGCTAAAGACCTA+CGG + chr2_1:61971110-61971129 Msa0216240:intron 35.0%
TTTAGAAGCTAAAGACCTAC+GGG + chr2_1:61971111-61971130 Msa0216240:intron 35.0%
GAACAACCTAATGTTATAGC+AGG + chr2_1:61971188-61971207 Msa0216240:intron 35.0%
CTAATGTTATAGCAGGTCTA+GGG + chr2_1:61971195-61971214 Msa0216240:intron 35.0%
!! TTTCTAAGACTACAGTCACA+TGG + chr2_1:61971279-61971298 Msa0216240:intron 35.0%
! TATCCTTTGAACTAGGGTTT+TGG + chr2_1:61971572-61971591 Msa0216240:intron 35.0%
ATACCAAAACCCTAGTTCAA+AGG - chr2_1:61971578-61971597 None:intergenic 35.0%
TTCATAACGTCACTCAAACA+AGG - chr2_1:61971602-61971621 None:intergenic 35.0%
AGTGACGTTATGAATATTGC+AGG + chr2_1:61971608-61971627 Msa0216240:intron 35.0%
TGGCTTCTTTATAACATCCT+GGG + chr2_1:61971785-61971804 Msa0216240:intron 35.0%
TCAATGTTACCGACATATAC+TGG - chr2_1:61971862-61971881 None:intergenic 35.0%
! ATATGGAGCATCTGTCTAAT+TGG + chr2_1:61972065-61972084 Msa0216240:CDS 35.0%
! TATGGAGCATCTGTCTAATT+GGG + chr2_1:61972066-61972085 Msa0216240:CDS 35.0%
!! TTTCTTTGAGTTGCAGGATT+AGG - chr2_1:61972121-61972140 None:intergenic 35.0%
TAAAAGAGAGAAGGATGGAA+AGG + chr2_1:61972150-61972169 Msa0216240:intron 35.0%
TGAATAATCAGCGAGTCAAT+AGG - chr2_1:61972304-61972323 None:intergenic 35.0%
! TTCTGGTTACAGATTTATGG+AGG + chr2_1:61972394-61972413 Msa0216240:intron 35.0%
!!! CTAGAGCTTACTTTTTGGAA+GGG - chr2_1:61972439-61972458 None:intergenic 35.0%
!! TTCTGCTAGAGCTTACTTTT+TGG - chr2_1:61972444-61972463 None:intergenic 35.0%
GCTCTAGCAGAAGTTTAATT+TGG + chr2_1:61972452-61972471 Msa0216240:intron 35.0%
TGGTTTAATGTTTATGTGGC+AGG + chr2_1:61972597-61972616 Msa0216240:intron 35.0%
TTATAAGAAGGTTCAGCCTA+AGG + chr2_1:61972676-61972695 Msa0216240:CDS 35.0%
TTGAAAACTGTTCGTTCCTT+AGG - chr2_1:61972695-61972714 None:intergenic 35.0%
AATAGGGGTAGAGTAAGTTT+GGG - chr2_1:61972804-61972823 None:intergenic 35.0%
ATGTAGGTAGCTAACAATAG+GGG - chr2_1:61972819-61972838 None:intergenic 35.0%
CATGTAGGTAGCTAACAATA+GGG - chr2_1:61972820-61972839 None:intergenic 35.0%
! TTCTTTTACTGCACTTCAAG+TGG + chr2_1:61972945-61972964 Msa0216240:intron 35.0%
GAGACTTAAGCTAAAAACGA+AGG - chr2_1:61973335-61973354 None:intergenic 35.0%
GTGTAGGACATAACTTATTG+TGG + chr2_1:61973440-61973459 Msa0216240:three_prime_UTR 35.0%
TGTGGATATGAATTAGGTGA+TGG + chr2_1:61973458-61973477 Msa0216240:three_prime_UTR 35.0%
GTGGATATGAATTAGGTGAT+GGG + chr2_1:61973459-61973478 Msa0216240:three_prime_UTR 35.0%
TGGATATGAATTAGGTGATG+GGG + chr2_1:61973460-61973479 Msa0216240:three_prime_UTR 35.0%
TCATGGATATTATGGTGTCT+TGG + chr2_1:61973515-61973534 Msa0216240:three_prime_UTR 35.0%
CATGGATATTATGGTGTCTT+GGG + chr2_1:61973516-61973535 Msa0216240:three_prime_UTR 35.0%
TCTTGGGATATAATATGCTG+TGG + chr2_1:61973532-61973551 Msa0216240:three_prime_UTR 35.0%
GGATATAATATGCTGTGGAT+GGG + chr2_1:61973537-61973556 Msa0216240:three_prime_UTR 35.0%
GATATAATATGCTGTGGATG+GGG + chr2_1:61973538-61973557 Msa0216240:three_prime_UTR 35.0%
!! GGTTTTGTCTATTGCAATAG+AGG + chr2_1:61973559-61973578 Msa0216240:three_prime_UTR 35.0%
! TTGATAGCACACTGTAGAAA+AGG - chr2_1:61973607-61973626 None:intergenic 35.0%
AAGACAAAACTTCCATCACA+AGG - chr2_1:61973649-61973668 None:intergenic 35.0%
! TTTTCATAGGATATATGGCC+TGG - chr2_1:61973708-61973727 None:intergenic 35.0%
AGGCCATATATCCTATGAAA+AGG + chr2_1:61973707-61973726 Msa0216240:three_prime_UTR 35.0%
CCATATATCCTATGAAAAGG+CGG + chr2_1:61973710-61973729 Msa0216240:three_prime_UTR 35.0%
TTACTTGGACTGATCGAAAT+TGG + chr2_1:61973744-61973763 Msa0216240:three_prime_UTR 35.0%
! ATGATGCTTTTGCATGTCTA+TGG + chr2_1:61973858-61973877 Msa0216240:three_prime_UTR 35.0%
TCGAGAAACGTTAACGGTAA+TGG + chr2_1:61968333-61968352 Msa0216240:CDS 40.0%
! CAGTGATGATGAATCGGATT+CGG + chr2_1:61968563-61968582 Msa0216240:CDS 40.0%
GAGAGAAAGAGAAGAAGAGA+AGG + chr2_1:61968724-61968743 Msa0216240:CDS 40.0%
AGAGAAGAAGAGAAGGAAGA+AGG + chr2_1:61968731-61968750 Msa0216240:CDS 40.0%
AGGAGAAAGAAGAAGAGAGA+AGG + chr2_1:61968751-61968770 Msa0216240:CDS 40.0%
! GGTGCTGTGACTAATTTATG+GGG + chr2_1:61968828-61968847 Msa0216240:CDS 40.0%
CTCACGATCAAGTTAGTGAT+TGG + chr2_1:61969276-61969295 Msa0216240:intron 40.0%
!! GTCGAGAGTGTAAGGTTTTA+GGG + chr2_1:61969298-61969317 Msa0216240:intron 40.0%
CATCTTCCAAGAGATTACAC+TGG - chr2_1:61969866-61969885 None:intergenic 40.0%
TGGAAGATGAAGGTAGTTGT+TGG + chr2_1:61969877-61969896 Msa0216240:intron 40.0%
! GAATATACATCGGCTGTTGA+TGG + chr2_1:61969983-61970002 Msa0216240:intron 40.0%
TAATATAGAGGGGTCTAGGA+AGG + chr2_1:61970541-61970560 Msa0216240:intron 40.0%
AATATAGAGGGGTCTAGGAA+GGG + chr2_1:61970542-61970561 Msa0216240:intron 40.0%
TGTTCACTTGACACCAAAAC+AGG + chr2_1:61970745-61970764 Msa0216240:intron 40.0%
TCTTTACAGCATGCTGATAG+TGG - chr2_1:61970811-61970830 None:intergenic 40.0%
CCTAGACCTGCTATAACATT+AGG - chr2_1:61971197-61971216 None:intergenic 40.0%
CCTAATGTTATAGCAGGTCT+AGG + chr2_1:61971194-61971213 Msa0216240:intron 40.0%
ATCCACTGTAGACATATTGC+AGG + chr2_1:61971227-61971246 Msa0216240:intron 40.0%
CCTCTTGCAAATGCAAACTA+AGG - chr2_1:61971256-61971275 None:intergenic 40.0%
!! CCTTAGTTTGCATTTGCAAG+AGG + chr2_1:61971253-61971272 Msa0216240:intron 40.0%
GCAAACTCAGCCAAAAATAC+AGG - chr2_1:61971518-61971537 None:intergenic 40.0%
! TTCCTCTTCCTTTTTCTGTG+TGG + chr2_1:61971729-61971748 Msa0216240:intron 40.0%
AACCACACAGAAAAAGGAAG+AGG - chr2_1:61971734-61971753 None:intergenic 40.0%
ACAGAGAACCACACAGAAAA+AGG - chr2_1:61971740-61971759 None:intergenic 40.0%
GTGGCTTCTTTATAACATCC+TGG + chr2_1:61971784-61971803 Msa0216240:intron 40.0%
TCTTTATAACATCCTGGGAC+TGG + chr2_1:61971790-61971809 Msa0216240:intron 40.0%
CTTTATAACATCCTGGGACT+GGG + chr2_1:61971791-61971810 Msa0216240:intron 40.0%
GACAAGAAATGCAGTCCAAT+AGG - chr2_1:61971928-61971947 None:intergenic 40.0%
! TTAAGGTGCCACAAGAGAAA+AGG + chr2_1:61972241-61972260 Msa0216240:intron 40.0%
! ATGAGCATCCTTTTCTCTTG+TGG - chr2_1:61972252-61972271 None:intergenic 40.0%
!!! GCTAGAGCTTACTTTTTGGA+AGG - chr2_1:61972440-61972459 None:intergenic 40.0%
ACAGTCTTGATGCTTACTAC+AGG + chr2_1:61972624-61972643 Msa0216240:CDS 40.0%
CAATAGGGGTAGAGTAAGTT+TGG - chr2_1:61972805-61972824 None:intergenic 40.0%
GCATGTAGGTAGCTAACAAT+AGG - chr2_1:61972821-61972840 None:intergenic 40.0%
GAAGAGTTGACAGAGTGAAA+AGG - chr2_1:61972894-61972913 None:intergenic 40.0%
TTGCAACATTTCTTGTCTGC+AGG - chr2_1:61973044-61973063 None:intergenic 40.0%
GCAAGTACGTGAAAAACAGA+AGG + chr2_1:61973060-61973079 Msa0216240:CDS 40.0%
!! GATAGCTTTGAAGCGTGAAA+TGG + chr2_1:61973093-61973112 Msa0216240:CDS 40.0%
TTGAAGCGTGAAATGGAAAG+TGG + chr2_1:61973100-61973119 Msa0216240:CDS 40.0%
TATGTCCTACACTGTCTACA+CGG - chr2_1:61973432-61973451 None:intergenic 40.0%
GGGATATAATATGCTGTGGA+TGG + chr2_1:61973536-61973555 Msa0216240:three_prime_UTR 40.0%
ATAGATGTGTTGCCTTGTGA+TGG + chr2_1:61973634-61973653 Msa0216240:three_prime_UTR 40.0%
! CCGCCTTTTCATAGGATATA+TGG - chr2_1:61973713-61973732 None:intergenic 40.0%
ACAGTATGCACTATGTTCTG+AGG - chr2_1:61973902-61973921 None:intergenic 40.0%
CTCCGTCGAAAAGAGATTCA+AGG + chr2_1:61968403-61968422 Msa0216240:CDS 45.0%
GACGTGATTTCCTCTTCCTA+CGG - chr2_1:61968533-61968552 None:intergenic 45.0%
GTAGGAAGAGGAAATCACGT+CGG + chr2_1:61968532-61968551 Msa0216240:CDS 45.0%
TGTTATGCTTTGATCCGGAG+TGG + chr2_1:61969170-61969189 Msa0216240:intron 45.0%
CCATCAATCTAAGTCCACTC+CGG - chr2_1:61969187-61969206 None:intergenic 45.0%
! TAGATTGATGGCCTGAGAGA+CGG + chr2_1:61969196-61969215 Msa0216240:intron 45.0%
! AGTGATTGGTCGAGAGTGTA+AGG + chr2_1:61969290-61969309 Msa0216240:intron 45.0%
!! GGTCGAGAGTGTAAGGTTTT+AGG + chr2_1:61969297-61969316 Msa0216240:intron 45.0%
TCTGGATTGATCCGTTTCGT+TGG + chr2_1:61969518-61969537 Msa0216240:intron 45.0%
CATCGTCCAAGAGATTAGAC+TGG - chr2_1:61970249-61970268 None:intergenic 45.0%
ATATAGAGGGGTCTAGGAAG+GGG + chr2_1:61970543-61970562 Msa0216240:intron 45.0%
AGGTAGTTGTTGACACAAGC+AGG + chr2_1:61970924-61970943 Msa0216240:intron 45.0%
GAATATGCACCAGCTGTTGA+TGG + chr2_1:61971019-61971038 Msa0216240:intron 45.0%
TGCAACAAACCATCAACAGC+TGG - chr2_1:61971031-61971050 None:intergenic 45.0%
TGTTATAGCAGGTCTAGGGA+AGG + chr2_1:61971199-61971218 Msa0216240:intron 45.0%
GTTATAGCAGGTCTAGGGAA+GGG + chr2_1:61971200-61971219 Msa0216240:intron 45.0%
AGCCTGCAATATGTCTACAG+TGG - chr2_1:61971232-61971251 None:intergenic 45.0%
!! CAGCACGACCTTTAGAATGT+AGG - chr2_1:61971481-61971500 None:intergenic 45.0%
CTTAACTTCTGCCAACCATG+CGG - chr2_1:61971653-61971672 None:intergenic 45.0%
ATGGTTGGCAGAAGTTAAGC+TGG + chr2_1:61971654-61971673 Msa0216240:CDS 45.0%
GAGAGAAGGATGGAAAGGAA+AGG + chr2_1:61972155-61972174 Msa0216240:intron 45.0%
GCGAGTCAATAGGTCAGTTA+AGG - chr2_1:61972294-61972313 None:intergenic 45.0%
TCGCAGAACAAGGATGTACA+CGG - chr2_1:61972516-61972535 None:intergenic 45.0%
TGCTTACTACAGGCGTCAAA+TGG + chr2_1:61972634-61972653 Msa0216240:CDS 45.0%
TCAATGATGAAGAACAGCGC+AGG + chr2_1:61972711-61972730 Msa0216240:CDS 45.0%
! GCGCAGGTATGATTTTGAAC+AGG + chr2_1:61972727-61972746 Msa0216240:intron 45.0%
GCGTGAAATGGAAAGTGGAA+TGG + chr2_1:61973105-61973124 Msa0216240:CDS 45.0%
TGAAAGAGCAAGCACAACTC+AGG + chr2_1:61973240-61973259 Msa0216240:CDS 45.0%
GAAAGAGCAAGCACAACTCA+GGG + chr2_1:61973241-61973260 Msa0216240:CDS 45.0%
ATGGCTTACCAGTACAAGCT+TGG + chr2_1:61973269-61973288 Msa0216240:CDS 45.0%
CAAAGTTGCCAAGCTTGTAC+TGG - chr2_1:61973280-61973299 None:intergenic 45.0%
GTACAAGCTTGGCAACTTTG+AGG + chr2_1:61973280-61973299 Msa0216240:CDS 45.0%
!! CTGTAGAAAAGGCGTCAATG+TGG - chr2_1:61973596-61973615 None:intergenic 45.0%
GATATATGGCCTGGACAGTT+TGG - chr2_1:61973699-61973718 None:intergenic 45.0%
CAGTCCAAGTAAGATGCACA+AGG - chr2_1:61973736-61973755 None:intergenic 45.0%
! CGTTAACGGTAATGGTGCTC+CGG + chr2_1:61968341-61968360 Msa0216240:CDS 50.0%
ACCAGCTCAGAGAAAGACGA+CGG + chr2_1:61968375-61968394 Msa0216240:CDS 50.0%
ACGGCGTCGTTTATCGGAAT+CGG - chr2_1:61968514-61968533 None:intergenic 50.0%
ATTCCGATAAACGACGCCGT+AGG + chr2_1:61968514-61968533 Msa0216240:CDS 50.0%
CTTCCTACGGCGTCGTTTAT+CGG - chr2_1:61968520-61968539 None:intergenic 50.0%
ATAAACGACGCCGTAGGAAG+AGG + chr2_1:61968520-61968539 Msa0216240:CDS 50.0%
CAGAGAGCGATGAATCCGAA+CGG + chr2_1:61968589-61968608 Msa0216240:CDS 50.0%
TGAATCCGAACGGTCTGGTT+CGG + chr2_1:61968599-61968618 Msa0216240:CDS 50.0%
! TGGTTCGGAGTCGGAGTATT+CGG + chr2_1:61968614-61968633 Msa0216240:CDS 50.0%
! TATTCGGGTTCGGAGAGTGA+AGG + chr2_1:61968630-61968649 Msa0216240:CDS 50.0%
AGAGGGAGGAAGAGAAGAGA+AGG + chr2_1:61968697-61968716 Msa0216240:CDS 50.0%
! CCGGAGTGGACTTAGATTGA+TGG + chr2_1:61969184-61969203 Msa0216240:intron 50.0%
GACGGTTGAGTAGCTGAGTA+TGG + chr2_1:61969214-61969233 Msa0216240:intron 50.0%
CATGGTCCTGATTGAGTCTC+TGG + chr2_1:61969450-61969469 Msa0216240:intron 50.0%
AGTCCAGCTCACCAACGAAA+CGG - chr2_1:61969532-61969551 None:intergenic 50.0%
! TTTCGTTGGTGAGCTGGACT+TGG + chr2_1:61969532-61969551 Msa0216240:intron 50.0%
ATCTCGGGGACACCTTAACA+AGG + chr2_1:61970021-61970040 Msa0216240:intron 50.0%
TGGACGATGACAGTAGTTGC+TGG + chr2_1:61970260-61970279 Msa0216240:intron 50.0%
! AGCTAAAGACCTACGGGCTA+CGG + chr2_1:61971117-61971136 Msa0216240:intron 50.0%
AGTCTTGACGCAACAGTTGG+AGG - chr2_1:61971318-61971337 None:intergenic 50.0%
GGAAGTCTTGACGCAACAGT+TGG - chr2_1:61971321-61971340 None:intergenic 50.0%
TATAACATCCTGGGACTGGG+AGG + chr2_1:61971794-61971813 Msa0216240:intron 50.0%
CATCTCATCGTCGCAGAACA+AGG - chr2_1:61972526-61972545 None:intergenic 50.0%
ATTGCAGCAGCAGCCTATAG+TGG - chr2_1:61973383-61973402 None:intergenic 50.0%
TGCTGCAATCCAGAGAAGGT+TGG + chr2_1:61973394-61973413 Msa0216240:CDS 50.0%
! TTTGGAGATGCTCGCTGACT+TGG - chr2_1:61973681-61973700 None:intergenic 50.0%
GTCGTCTTTCTCTGAGCTGG+TGG - chr2_1:61968376-61968395 None:intergenic 55.0%
AGCGATGAATCCGAACGGTC+TGG + chr2_1:61968594-61968613 Msa0216240:CDS 55.0%
! GGTTCGGAGTCGGAGTATTC+GGG + chr2_1:61968615-61968634 Msa0216240:CDS 55.0%
! GGAGTCGGAGTATTCGGGTT+CGG + chr2_1:61968620-61968639 Msa0216240:CDS 55.0%
GTTCGGAGAGTGAAGGAGAG+AGG + chr2_1:61968637-61968656 Msa0216240:CDS 55.0%
GGAGAGTGAAGGAGAGAGGA+AGG + chr2_1:61968641-61968660 Msa0216240:CDS 55.0%
GTGAAGGAGAGAGGAAGGAG+AGG + chr2_1:61968646-61968665 Msa0216240:CDS 55.0%
GAGAGAGGAAGGAGAGGAAG+AGG + chr2_1:61968652-61968671 Msa0216240:CDS 55.0%
GAGGAAGGAGAGGAAGAGGA+AGG + chr2_1:61968656-61968675 Msa0216240:CDS 55.0%
GGAAGAGGAAGGAGAAGCGA+AGG + chr2_1:61968667-61968686 Msa0216240:CDS 55.0%
AGAGGAAGGAGAAGCGAAGG+AGG + chr2_1:61968670-61968689 Msa0216240:CDS 55.0%
AGAAGCGAAGGAGGAGAGAG+AGG + chr2_1:61968679-61968698 Msa0216240:CDS 55.0%
GAAGCGAAGGAGGAGAGAGA+GGG + chr2_1:61968680-61968699 Msa0216240:CDS 55.0%
GGGAGGAAGAGAAGAGAAGG+AGG + chr2_1:61968700-61968719 Msa0216240:CDS 55.0%
CAGCTACTCAACCGTCTCTC+AGG - chr2_1:61969210-61969229 None:intergenic 55.0%
TACACCACCACCTCTGTGGA+GGG - chr2_1:61969244-61969263 None:intergenic 55.0%
CAAGTACACCACCACCTCTG+TGG - chr2_1:61969248-61969267 None:intergenic 55.0%
GCGAGTCCAGAGACTCAATC+AGG - chr2_1:61969459-61969478 None:intergenic 55.0%
ATTGAGTCTCTGGACTCGCC+TGG + chr2_1:61969460-61969479 Msa0216240:intron 55.0%
TTGAGTCTCTGGACTCGCCT+GGG + chr2_1:61969461-61969480 Msa0216240:intron 55.0%
! GATCCGTTTCGTTGGTGAGC+TGG + chr2_1:61969526-61969545 Msa0216240:intron 55.0%
TTTCAGTTGCCGTAGCCCGT+AGG - chr2_1:61971129-61971148 None:intergenic 55.0%
TAGCAGGTCTAGGGAAGGGT+AGG + chr2_1:61971204-61971223 Msa0216240:intron 55.0%
TGACGCAACAGTTGGAGGCT+TGG - chr2_1:61971313-61971332 None:intergenic 55.0%
TCCAGAGTTCACCGCATGGT+TGG + chr2_1:61971639-61971658 Msa0216240:CDS 55.0%
GAAAACATCCTCCCAGTCCC+AGG - chr2_1:61971805-61971824 None:intergenic 55.0%
AGAGCAAGCACAACTCAGGG+AGG + chr2_1:61973244-61973263 Msa0216240:CDS 55.0%
AGCACAACTCAGGGAGGAGA+TGG + chr2_1:61973250-61973269 Msa0216240:CDS 55.0%
CTGCTGCTGCAATCCAGAGA+AGG + chr2_1:61973390-61973409 Msa0216240:CDS 55.0%
CATCAGGGTCCAACCTTCTC+TGG - chr2_1:61973406-61973425 None:intergenic 55.0%
CTGTCTACACGGCAGCATCA+GGG - chr2_1:61973421-61973440 None:intergenic 55.0%
ACTGTCTACACGGCAGCATC+AGG - chr2_1:61973422-61973441 None:intergenic 55.0%
TGCTGCCGTGTAGACAGTGT+AGG + chr2_1:61973424-61973443 Msa0216240:exon 55.0%
CGAGCATCTCCAAACTGTCC+AGG + chr2_1:61973687-61973706 Msa0216240:three_prime_UTR 55.0%
! GCACAAGGCCGCCTTTTCAT+AGG - chr2_1:61973721-61973740 None:intergenic 55.0%
! GCGGCCTTGTGCATCTTACT+TGG + chr2_1:61973729-61973748 Msa0216240:three_prime_UTR 55.0%
!! GAGCTGGTGGCGATTTTCGC+CGG - chr2_1:61968363-61968382 None:intergenic 60.0%
GCCGTCGTCTTTCTCTGAGC+TGG - chr2_1:61968379-61968398 None:intergenic 60.0%
CGACTCCGAACCAGACCGTT+CGG - chr2_1:61968607-61968626 None:intergenic 60.0%
!! CGAACGGTCTGGTTCGGAGT+CGG + chr2_1:61968605-61968624 Msa0216240:CDS 60.0%
GTATGGCATCCCCTCCACAG+AGG + chr2_1:61969231-61969250 Msa0216240:intron 60.0%
ACACCACCACCTCTGTGGAG+GGG - chr2_1:61969243-61969262 None:intergenic 60.0%
GTACACCACCACCTCTGTGG+AGG - chr2_1:61969245-61969264 None:intergenic 60.0%
TGCGGTGAACTCTGGACGCT+TGG - chr2_1:61971635-61971654 None:intergenic 60.0%
AGCGTCCAGAGTTCACCGCA+TGG + chr2_1:61971635-61971654 Msa0216240:CDS 60.0%
GCCAACCATGCGGTGAACTC+TGG - chr2_1:61971643-61971662 None:intergenic 60.0%
GCGAAGGAGGAGAGAGAGGG+AGG + chr2_1:61968683-61968702 Msa0216240:CDS 65.0%
TGGCATCCCCTCCACAGAGG+TGG + chr2_1:61969234-61969253 Msa0216240:intron 65.0%
CATCCCCTCCACAGAGGTGG+TGG + chr2_1:61969237-61969256 Msa0216240:intron 65.0%
CTCGCCTGGGTGTGCTTCTG+TGG + chr2_1:61969474-61969493 Msa0216240:intron 65.0%
! GACGCCACAGAAGCACACCC+AGG - chr2_1:61969481-61969500 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 61968314 61973933 61968314 ID=Msa0216240;Name=Msa0216240
chr2_1 mRNA 61968314 61973933 61968314 ID=Msa0216240-mRNA-1;Parent=Msa0216240;Name=Msa0216240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=16|1|1|1|1|1|8|497|334
chr2_1 exon 61968314 61968883 61968314 ID=Msa0216240-mRNA-1:exon:17098;Parent=Msa0216240-mRNA-1
chr2_1 exon 61971630 61971675 61971630 ID=Msa0216240-mRNA-1:exon:17099;Parent=Msa0216240-mRNA-1
chr2_1 exon 61972061 61972110 61972061 ID=Msa0216240-mRNA-1:exon:17100;Parent=Msa0216240-mRNA-1
chr2_1 exon 61972406 61972447 61972406 ID=Msa0216240-mRNA-1:exon:17101;Parent=Msa0216240-mRNA-1
chr2_1 exon 61972619 61972732 61972619 ID=Msa0216240-mRNA-1:exon:17102;Parent=Msa0216240-mRNA-1
chr2_1 exon 61973048 61973126 61973048 ID=Msa0216240-mRNA-1:exon:17103;Parent=Msa0216240-mRNA-1
chr2_1 exon 61973230 61973301 61973230 ID=Msa0216240-mRNA-1:exon:17104;Parent=Msa0216240-mRNA-1
chr2_1 exon 61973389 61973933 61973389 ID=Msa0216240-mRNA-1:exon:17105;Parent=Msa0216240-mRNA-1
chr2_1 five_prime_UTR 61968314 61968329 61968314 ID=Msa0216240-mRNA-1:five_prime_utr;Parent=Msa0216240-mRNA-1
chr2_1 CDS 61968330 61968883 61968330 ID=Msa0216240-mRNA-1:cds;Parent=Msa0216240-mRNA-1
chr2_1 CDS 61971630 61971675 61971630 ID=Msa0216240-mRNA-1:cds;Parent=Msa0216240-mRNA-1
chr2_1 CDS 61972061 61972110 61972061 ID=Msa0216240-mRNA-1:cds;Parent=Msa0216240-mRNA-1
chr2_1 CDS 61972406 61972447 61972406 ID=Msa0216240-mRNA-1:cds;Parent=Msa0216240-mRNA-1
chr2_1 CDS 61972619 61972732 61972619 ID=Msa0216240-mRNA-1:cds;Parent=Msa0216240-mRNA-1
chr2_1 CDS 61973048 61973126 61973048 ID=Msa0216240-mRNA-1:cds;Parent=Msa0216240-mRNA-1
chr2_1 CDS 61973230 61973301 61973230 ID=Msa0216240-mRNA-1:cds;Parent=Msa0216240-mRNA-1
chr2_1 CDS 61973389 61973436 61973389 ID=Msa0216240-mRNA-1:cds;Parent=Msa0216240-mRNA-1
chr2_1 three_prime_UTR 61973437 61973933 61973437 ID=Msa0216240-mRNA-1:three_prime_utr;Parent=Msa0216240-mRNA-1
Gene Sequence

>Msa0216240

ATGTCGAGAAACGTTAACGGTAATGGTGCTCCGGCGAAAATCGCCACCAGCTCAGAGAAAGACGACGGCGAAGCTCCGTCGAAAAGAGATTCAAGGAAAACACGAGAATATTCTGATATAGACACACAAACCGATAGAAAGCATAGTAGCTCAAAGAAGAAATCGCGTGAGAGTTCAGATTCCGATTCCGATAAACGACGCCGTAGGAAGAGGAAATCACGTCGGAGATACAGCAGTGATGATGAATCGGATTCGGAGTCAGAGAGCGATGAATCCGAACGGTCTGGTTCGGAGTCGGAGTATTCGGGTTCGGAGAGTGAAGGAGAGAGGAAGGAGAGGAAGAGGAAGGAGAAGCGAAGGAGGAGAGAGAGGGAGGAAGAGAAGAGAAGGAGGAGAGAGAAAGAGAAGAAGAGAAGGAAGAAGGAGAAAGAAGAAGAGAGAAGGAAGAAAGAGAAACGAAAAATGAAGAAGAAGGAGAAAAAGGAAAGAGGGAAGAAAGGTGCTGTGACTAATTTATGGGGAAAGTATGGGATTATTAGAGAAACTGATATGTGGACCAAGCGTCCAGAGTTCACCGCATGGTTGGCAGAAGTTAAGCTGGTAAATATGGAGCATCTGTCTAATTGGGAAGAAAAACAGATGTTCAAAGAATTTATGGAGGATCACAACACAGCTACGTTCCCTTCCAAAAAGTATTACAGTCTTGATGCTTACTACAGGCGTCAAATGGAAAAAGAGATGAAAAAGGGTTATAAGAAGGTTCAGCCTAAGGAACGAACAGTTTTCAATGATGAAGAACAGCGCAGACAAGAAATGTTGCAAGTACGTGAAAAACAGAAGGAAGAGCAAGTGATAGCTTTGAAGCGTGAAATGGAAAGTGGAATGGCACAAGCAATGAAAGAGCAAGCACAACTCAGGGAGGAGATGGCTTACCAGTACAAGCTTGGCAACTTTGAGGCTGCTGCTGCAATCCAGAGAAGGTTGGACCCTGATGCTGCCGTGTAG

Protein sequence

>Msa0216240

MSRNVNGNGAPAKIATSSEKDDGEAPSKRDSRKTREYSDIDTQTDRKHSSSKKKSRESSDSDSDKRRRRKRKSRRRYSSDDESDSESESDESERSGSESEYSGSESEGERKERKRKEKRRRREREEEKRRRREKEKKRRKKEKEEERRKKEKRKMKKKEKKERGKKGAVTNLWGKYGIIRETDMWTKRPEFTAWLAEVKLVNMEHLSNWEEKQMFKEFMEDHNTATFPSKKYYSLDAYYRRQMEKEMKKGYKKVQPKERTVFNDEEQRRQEMLQVREKQKEEQVIALKREMESGMAQAMKEQAQLREEMAYQYKLGNFEAAAAIQRRLDPDAAV*