AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1379850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379850 MtrunA17_Chr8g0387891 94.239 1354 78 0 1 1354 1 1354 0.0 2435
Msa1379850 MtrunA17_Chr8g0387911 65.527 702 163 7 687 1354 3 659 0.0 796
Msa1379850 MtrunA17_Chr8g0387911 33.333 687 315 21 423 1024 1 629 2.49e-49 187
Msa1379850 MtrunA17_Chr8g0387881 28.044 813 452 15 551 1348 83 777 7.11e-60 221
Msa1379850 MtrunA17_Chr8g0387881 30.328 366 229 7 340 683 99 460 6.87e-20 96.3
Msa1379850 MtrunA17_Chr8g0387901 84.286 70 11 0 1285 1354 1 70 9.28e-25 99.0
Msa1379850 MtrunA17_Chr5g0432781 23.711 582 361 18 7 544 18 560 2.41e-13 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1379850 AT5G41790.1 29.458 1273 621 34 137 1352 528 1580 2.47e-83 301
Msa1379850 AT5G41790.1 31.299 770 456 12 1 746 1 721 2.14e-60 229
Msa1379850 AT5G41790.2 29.458 1273 621 34 137 1352 528 1580 2.47e-83 301
Msa1379850 AT5G41790.2 31.299 770 456 12 1 746 1 721 2.14e-60 229
Msa1379850 AT1G64330.1 42.017 238 117 4 1 238 1 217 1.42e-38 153
Msa1379850 AT5G41780.2 28.571 308 159 8 1039 1345 284 531 5.93e-15 80.1
Msa1379850 AT5G41780.3 28.571 308 159 8 1039 1345 284 531 5.93e-15 80.1
Msa1379850 AT5G41780.1 28.571 308 159 8 1039 1345 284 531 5.93e-15 80.1
Msa1379850 AT5G41780.4 28.571 308 159 8 1039 1345 284 531 5.93e-15 80.1
Msa1379850 AT1G64320.2 32.609 184 121 1 359 539 105 288 3.05e-14 78.2
Msa1379850 AT1G64320.2 24.809 653 337 21 706 1347 109 618 1.18e-11 69.7
Msa1379850 AT1G64320.1 32.609 184 121 1 359 539 105 288 3.05e-14 78.2
Msa1379850 AT1G64320.1 24.809 653 337 21 706 1347 109 618 1.18e-11 69.7

Find 239 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTCAAGTTCTGAAATT+TGG 0.142967 tig0020315:+23017 None:intergenic
TAAGAATCTTCAACTTAATT+TGG 0.157767 tig0020315:-21643 Msa1379850:CDS
GAACTTCCAGGTCAGATTTC+TGG 0.200021 tig0020315:+21955 None:intergenic
AATATAAACAAATTGATAAT+TGG 0.205472 tig0020315:-21095 Msa1379850:CDS
AAAACTTGAAGCAATATTTA+AGG 0.207712 tig0020315:-26259 Msa1379850:intron
TGGAGCTGCTCTTCTTTATC+AGG 0.210060 tig0020315:+24353 None:intergenic
GCTCACCAAAGGCAACTATT+TGG 0.214310 tig0020315:+21670 None:intergenic
AGATGTCAAATCTGATATTT+TGG 0.218858 tig0020315:+22136 None:intergenic
AGATGTCAAATCTGATATTT+TGG 0.218858 tig0020315:+22529 None:intergenic
AGATGTCAAATCTGATATTT+TGG 0.218858 tig0020315:+22922 None:intergenic
TAGTTCCTCTTCTCTTTCTT+TGG 0.220995 tig0020315:+22991 None:intergenic
ATCTGAATTAAGTCAGTTAA+AGG 0.235617 tig0020315:-23263 Msa1379850:CDS
AATTTCATGAATGGAATCTT+TGG 0.249338 tig0020315:+27455 None:intergenic
TAAACTGGCACAGGAAAATT+TGG 0.249711 tig0020315:-21448 Msa1379850:CDS
CTTGTCTGCTTCTTGTATCT+TGG 0.254462 tig0020315:+23744 None:intergenic
ATGAGTCCTCAAATCTTATC+AGG 0.261640 tig0020315:-23177 Msa1379850:CDS
GAACTTCCAAGTCAGATTTC+TGG 0.263958 tig0020315:+22348 None:intergenic
GAACTTCCAAGTCAGATTTC+TGG 0.263958 tig0020315:+22741 None:intergenic
ATCAAAGGCAAGCGAGAAAA+AGG 0.270364 tig0020315:-23988 Msa1379850:CDS
TCAAGTTGACAATCTGAAAA+AGG 0.281841 tig0020315:-21298 Msa1379850:CDS
CCATAAGTCTCTCTTGTTCC+AGG 0.283572 tig0020315:+21853 None:intergenic
CCATAAGTCTCTCTTGTTCC+AGG 0.283572 tig0020315:+22246 None:intergenic
GCAAAGATGAAGAGCAAATA+AGG 0.284452 tig0020315:-21758 Msa1379850:CDS
ATGAAGAAACTCAAAGATAA+TGG 0.288409 tig0020315:-22959 Msa1379850:CDS
GATTCAGAAAAGAGGATATA+AGG 0.290887 tig0020315:-26282 Msa1379850:five_prime_UTR
CTATAAGTCTCTCTTGTTCC+AGG 0.293435 tig0020315:+22639 None:intergenic
GCTCTTCAACTTCACTCTTC+TGG 0.295087 tig0020315:+21562 None:intergenic
GCTTCAGGATAAACTTTATA+AGG 0.298812 tig0020315:-21361 Msa1379850:CDS
GATACAAATATCAAAACTTT+TGG 0.303373 tig0020315:-23683 Msa1379850:CDS
TTTCCACAAGCTGAACTTCC+AGG 0.314911 tig0020315:+21943 None:intergenic
AGATCAGATGGTAACTGATT+TGG 0.316800 tig0020315:-20986 Msa1379850:CDS
ATGATTCATTCTCATTATCT+TGG 0.317997 tig0020315:+22555 None:intergenic
CTCACCAAAGGCAACTATTT+GGG 0.320192 tig0020315:+21671 None:intergenic
GTTCTGTAACCCGGAGCTTT+TGG 0.321991 tig0020315:+20857 None:intergenic
TGTAAACTTAATTAAACTAT+AGG 0.326875 tig0020315:-27336 Msa1379850:five_prime_UTR
AAACTTAGAGATAGAGAGTT+AGG 0.328511 tig0020315:+27271 None:intergenic
GAGTTTCAAAAGATAATTGA+TGG 0.329519 tig0020315:-23880 Msa1379850:CDS
ATTTGAGTTCTCTGCGCTTC+AGG 0.332437 tig0020315:-21376 Msa1379850:CDS
GCAGAAAACAAAAGAAGAAT+TGG 0.332606 tig0020315:-21262 Msa1379850:CDS
TGAAGAAACTCAAAGATAAT+GGG 0.336542 tig0020315:-22958 Msa1379850:CDS
TGAAGTTGCTGAGAGGAAAA+TGG 0.336584 tig0020315:-21049 Msa1379850:CDS
GAACTGGAAGAGCGCAATTT+AGG 0.347892 tig0020315:-23049 Msa1379850:CDS
AGAGACACAAATCACAAATC+TGG 0.348240 tig0020315:-23149 Msa1379850:CDS
GGAGGAACTGCAGGGTAAAA+AGG 0.350540 tig0020315:-20506 Msa1379850:CDS
AGTGTTCAACTCGCGGTCTT+TGG 0.356053 tig0020315:+21530 None:intergenic
AATCTGTCAGCGAGATGAAT+AGG 0.370727 tig0020315:-20567 Msa1379850:CDS
CTCTGATTCAGATTCGGATT+CGG 0.379482 tig0020315:-23950 Msa1379850:CDS
AAATTGAAGACAAAGTTAAA+AGG 0.385979 tig0020315:-24170 Msa1379850:CDS
CCATCAGGCAGCTCTGTTTG+TGG 0.387435 tig0020315:-20300 Msa1379850:CDS
CTGAGGTACCATCCTCTTCA+AGG 0.389764 tig0020315:+24121 None:intergenic
AAGGCAGAGGAAGAGGCTTC+AGG 0.392378 tig0020315:-21342 Msa1379850:CDS
AAACATCTCCCATGAGCTTC+AGG 0.394831 tig0020315:-20599 Msa1379850:CDS
CAAAGCAAATAAGTGCTAAC+CGG 0.397945 tig0020315:-21482 Msa1379850:CDS
CCTGGAGATGATTGATCACT+TGG 0.398053 tig0020315:+21727 None:intergenic
TCCTTTCCTCACCAATCTGT+TGG 0.398228 tig0020315:+23536 None:intergenic
AACCAGGCAGATAAAGAATC+TGG 0.399619 tig0020315:-21814 Msa1379850:CDS
TTCCAGATTCTTTATCTGCC+TGG 0.400921 tig0020315:+21812 None:intergenic
AGAGGAAGGCATGTTGGACT+TGG 0.402054 tig0020315:-20341 Msa1379850:CDS
ACATCTTCAAATTTCATGAA+TGG 0.402182 tig0020315:+27446 None:intergenic
ATCCAGCTCTGATTCAGATT+CGG 0.402519 tig0020315:-23956 Msa1379850:CDS
GCACTTTGTTTGAGAATGTC+AGG 0.405597 tig0020315:-20909 Msa1379850:CDS
CTTCATCTCCTTTCTCCTCC+AGG 0.406034 tig0020315:+20935 None:intergenic
TTGTTCACCATGTAGATTCC+AGG 0.410812 tig0020315:+24481 None:intergenic
AGGAAAAGAGGGAGGCCATC+AGG 0.414307 tig0020315:-20315 Msa1379850:CDS
GCCTGTCAAACCAAAAGCTC+CGG 0.415656 tig0020315:-20867 Msa1379850:CDS
CAGCTCCAGGGAGCTAAAAC+AGG 0.419836 tig0020315:-24338 Msa1379850:intron
ATTGATCAACTAGGTTTCTC+AGG 0.421379 tig0020315:+23500 None:intergenic
TAGTTCCCTGATAAGATTTG+AGG 0.422432 tig0020315:+23171 None:intergenic
TCAACCCAAATAGTTGCCTT+TGG 0.424305 tig0020315:-21675 Msa1379850:CDS
AACAACAATAAGCCACAATC+TGG 0.428884 tig0020315:-23380 Msa1379850:CDS
TGAAGACAGGATTGCTACTC+TGG 0.430102 tig0020315:-20764 Msa1379850:CDS
GAAGTTGATGAAAGAGAAAG+AGG 0.436821 tig0020315:-20359 Msa1379850:CDS
AAGAGTTTCGTGAAGGCATT+GGG 0.436849 tig0020315:-21014 Msa1379850:CDS
ATTCATATGGCAGAGATAGA+AGG 0.439111 tig0020315:-21699 Msa1379850:CDS
TCGTTTGTTGGAGGAACTGC+AGG 0.439419 tig0020315:-20515 Msa1379850:CDS
AGCAGACAAAATAGATCATT+CGG 0.441030 tig0020315:-21421 Msa1379850:CDS
AGAAACATGATGAGAAAGAC+AGG 0.442189 tig0020315:-23240 Msa1379850:CDS
AATGCTTTCGACTTGATTTG+AGG 0.442769 tig0020315:+22418 None:intergenic
TGAGAGGAAAATGGAAGAAA+TGG 0.442900 tig0020315:-21040 Msa1379850:CDS
ACTTGATATTGCTAAGAAGT+TGG 0.446043 tig0020315:-24448 Msa1379850:five_prime_UTR
CCTGGAACAAGAGAGACTTA+TGG 0.446554 tig0020315:-21853 Msa1379850:CDS
CCTGGAACAAGAGAGACTTA+TGG 0.446554 tig0020315:-22246 Msa1379850:CDS
TGTGTCAACAGTGTGATATC+TGG 0.447261 tig0020315:-20682 Msa1379850:CDS
AGAACTTGAAGTGGCGCATA+AGG 0.448377 tig0020315:-23848 Msa1379850:CDS
TTGGATATCAGTGGAGAAGA+TGG 0.448774 tig0020315:-24429 Msa1379850:exon
TACTGAACTAAATAAGCAAC+TGG 0.449051 tig0020315:-23653 Msa1379850:CDS
AATAAGCAACTGGACATTGC+TGG 0.450405 tig0020315:-23643 Msa1379850:CDS
GAAGAGTTTCGTGAAGGCAT+TGG 0.453185 tig0020315:-21015 Msa1379850:CDS
CATAAGTCTCTCTTGTTCCA+GGG 0.454250 tig0020315:+21854 None:intergenic
CATAAGTCTCTCTTGTTCCA+GGG 0.454250 tig0020315:+22247 None:intergenic
GAAGGACTTATGCTGCTCTC+TGG 0.459241 tig0020315:+20215 None:intergenic
ACTCATTCTTATGCCCTTCG+TGG 0.460651 tig0020315:+23194 None:intergenic
CCGGGATGAGATCAGTAAAC+TGG 0.460817 tig0020315:-21463 Msa1379850:CDS
ATCTCAGATAGAAAATTTGT+TGG 0.461527 tig0020315:-22117 Msa1379850:CDS
GGACTTGGGAGAGGAAAAGA+GGG 0.461535 tig0020315:-20326 Msa1379850:CDS
AATAATAATGGAATGAAAAG+TGG 0.461986 tig0020315:+27387 None:intergenic
GAGACACAAATCACAAATCT+GGG 0.465332 tig0020315:-23148 Msa1379850:CDS
GAATGTATTGCAGCAGGAAG+TGG 0.465976 tig0020315:-21991 Msa1379850:CDS
GAATGTATTGCAGCAGGAAG+TGG 0.465976 tig0020315:-22384 Msa1379850:CDS
GAATGTATTGCAGCAGGAAG+TGG 0.465976 tig0020315:-22777 Msa1379850:CDS
ACATGCTCAGAAAACTGAAC+TGG 0.466249 tig0020315:-22864 Msa1379850:CDS
TCTCCAGGATAAAATTCATA+TGG 0.467977 tig0020315:-21712 Msa1379850:CDS
GAGAGATAAAGATCGTTTGT+TGG 0.470868 tig0020315:-20527 Msa1379850:CDS
CATCCTTCAATTGATCAACT+AGG 0.470968 tig0020315:+23491 None:intergenic
AGAACAATTGCTAAGTGAAA+AGG 0.470987 tig0020315:-20839 Msa1379850:CDS
ATGAAAAGCTTCATTGTTAG+CGG 0.473067 tig0020315:+20729 None:intergenic
TATAAGTCTCTCTTGTTCCA+GGG 0.474446 tig0020315:+22640 None:intergenic
GCTAGAGGCGAAGGCAAGAA+AGG 0.475163 tig0020315:-20449 Msa1379850:CDS
ATCTGTCAGCGAGATGAATA+GGG 0.476754 tig0020315:-20566 Msa1379850:CDS
ATCTCAGATAGACAATTTGT+TGG 0.478113 tig0020315:-22510 Msa1379850:CDS
TGATAAAGAAGAGCAGCTCC+AGG 0.481731 tig0020315:-24351 Msa1379850:CDS
ACTTTATAAGGCAGAGGAAG+AGG 0.486519 tig0020315:-21349 Msa1379850:CDS
TGGACTTGGGAGAGGAAAAG+AGG 0.486625 tig0020315:-20327 Msa1379850:CDS
GGAATTAACTCTGAGGGAAA+AGG 0.491576 tig0020315:-20479 Msa1379850:CDS
GCAGATAAAGAATCTGGAAC+TGG 0.493067 tig0020315:-21808 Msa1379850:CDS
CCTCTGTAACCTCCAGATTG+TGG 0.497168 tig0020315:+23368 None:intergenic
ATGATTGATCACTTGGACGT+TGG 0.497533 tig0020315:+21734 None:intergenic
TTCACTCTTCTGGCTGCGTA+TGG 0.497591 tig0020315:+21572 None:intergenic
TTCAGAGAGAACTTGAAGAC+AGG 0.497857 tig0020315:-20777 Msa1379850:CDS
AAACCTAGTTGATCAATTGA+AGG 0.498028 tig0020315:-23494 Msa1379850:CDS
AGAGATAGAGAGTTAGGAAG+AGG 0.498876 tig0020315:+27277 None:intergenic
AAATCAATTGGTATTGATTG+TGG 0.500035 tig0020315:+24052 None:intergenic
CATGCTGTGTGTAAATCAAT+TGG 0.500843 tig0020315:+24040 None:intergenic
GAGAGCTGTCTCTTTCTCCA+TGG 0.510229 tig0020315:+23558 None:intergenic
GGAGCTGCTCTTCTTTATCA+GGG 0.518143 tig0020315:+24354 None:intergenic
GCTGTCTCAGAACAGAATAC+AGG 0.519724 tig0020315:-23293 Msa1379850:CDS
ATTCTTAATTTGCTCACCAA+AGG 0.522434 tig0020315:+21659 None:intergenic
GGTTGAGAAGCTAGAGGCGA+AGG 0.522512 tig0020315:-20458 Msa1379850:CDS
ACCGCTTGCTGAATTGATTG+AGG 0.523412 tig0020315:-24079 Msa1379850:CDS
TCAAATTCAAAGTCTGAAAG+AGG 0.523528 tig0020315:-22285 Msa1379850:CDS
TCAAATTCAAAGTCTGAAAG+AGG 0.523528 tig0020315:-22678 Msa1379850:CDS
TAATTGGTTTAATGAATACA+AGG 0.524529 tig0020315:-21079 Msa1379850:CDS
CCTCTTCAAAATTTCTGCTG+AGG 0.526955 tig0020315:+24104 None:intergenic
ATCCGAATCTGAATCAGAGC+TGG 0.527732 tig0020315:+23954 None:intergenic
GCTTAATAGATTCAGAAAAG+AGG 0.529190 tig0020315:-26290 Msa1379850:five_prime_UTR
CCAAGTGATCAATCATCTCC+AGG 0.530449 tig0020315:-21727 Msa1379850:CDS
ATTGTCAACTTGAGCTGTGA+AGG 0.530781 tig0020315:+21308 None:intergenic
CTGAATTTGAATTGAACACT+CGG 0.531534 tig0020315:+21905 None:intergenic
TCTTCAACTTAATTTGGCAC+AGG 0.532614 tig0020315:-21637 Msa1379850:CDS
TTGATGAAAGAGAAAGAGGA+AGG 0.532949 tig0020315:-20355 Msa1379850:CDS
GAAGACAGAAAACAATAGCT+TGG 0.533835 tig0020315:-23581 Msa1379850:CDS
GGAGGTTGACAGAAAATCCC+TGG 0.534305 tig0020315:-21871 Msa1379850:CDS
GGAGGTTGACAGAAAATCCC+TGG 0.534305 tig0020315:-22657 Msa1379850:CDS
GGAGGTTAGCAGAAAATCCC+TGG 0.535390 tig0020315:-22264 Msa1379850:CDS
GGATAAACTTTATAAGGCAG+AGG 0.539603 tig0020315:-21355 Msa1379850:CDS
GACAGTTACACATGAAGAGA+AGG 0.541075 tig0020315:-23800 Msa1379850:CDS
AAAAGAGACCTGGAGGAGAA+AGG 0.542883 tig0020315:-20943 Msa1379850:CDS
TGAGCTGAATGTATTGCAGC+AGG 0.545544 tig0020315:-21997 Msa1379850:CDS
TGAGCTGAATGTATTGCAGC+AGG 0.545544 tig0020315:-22390 Msa1379850:CDS
TGAGCTGAATGTATTGCAGC+AGG 0.545544 tig0020315:-22783 Msa1379850:CDS
AGCGAGATGAATAGGGTGAA+GGG 0.545897 tig0020315:-20559 Msa1379850:CDS
TGAACTTAAGAAGACGGTTG+AGG 0.546303 tig0020315:-20389 Msa1379850:CDS
AGAGAAAGAGGAAGGCATGT+TGG 0.551950 tig0020315:-20347 Msa1379850:CDS
GAGACAGCTCTCCAACAGAT+TGG 0.552178 tig0020315:-23547 Msa1379850:CDS
GCCCTTCGTGGATCTGAGTG+AGG 0.552709 tig0020315:+23206 None:intergenic
GGATTCGGATTATTCTTCAA+AGG 0.553942 tig0020315:-23935 Msa1379850:CDS
TGAGATCAGTAAACTGGCAC+AGG 0.554312 tig0020315:-21457 Msa1379850:CDS
GAAGTCCAAAGAAAGAGAAG+AGG 0.554619 tig0020315:-22996 Msa1379850:CDS
TGACAGGTGAGTTAAAGAAA+AGG 0.555026 tig0020315:-24011 Msa1379850:CDS
TTTCATTGTCAACCATTCTG+AGG 0.555248 tig0020315:+21199 None:intergenic
TGAAGACCTGAAAAGAGACC+TGG 0.555585 tig0020315:-20953 Msa1379850:CDS
AAAGGAAGATAGCTTTAGAA+AGG 0.556622 tig0020315:-20821 Msa1379850:CDS
AGGCATGTTGGACTTGGGAG+AGG 0.561691 tig0020315:-20335 Msa1379850:CDS
CCTGTCAAACCAAAAGCTCC+GGG 0.563571 tig0020315:-20866 Msa1379850:CDS
TCAAATTCAGAGTCTGAAAG+AGG 0.564270 tig0020315:-21892 Msa1379850:CDS
ACAACACCAGAAATCTGACT+TGG 0.566725 tig0020315:-22354 Msa1379850:CDS
ACAACACCAGAAATCTGACT+TGG 0.566725 tig0020315:-22747 Msa1379850:CDS
TTGAATTTGAATTGAACACT+CGG 0.566781 tig0020315:+22691 None:intergenic
TAAAGATGACAACCTTGAAG+AGG 0.567802 tig0020315:-24133 Msa1379850:CDS
AGAAAACAATAGCTTGGCCA+TGG 0.568696 tig0020315:-23575 Msa1379850:CDS
CATGGATCTTCAGAGAACAT+TGG 0.568700 tig0020315:-21154 Msa1379850:CDS
CTGGGATAGATACTGTGAGC+AGG 0.568744 tig0020315:-20663 Msa1379850:CDS
TCCTCAATCAATTCAGCAAG+CGG 0.569949 tig0020315:+24078 None:intergenic
TGTTGTTGAACTTAAGAAGA+CGG 0.572100 tig0020315:-20395 Msa1379850:CDS
TTCACTTCCTGGAATCTACA+TGG 0.574341 tig0020315:-24488 Msa1379850:five_prime_UTR
TCCAACAGATTGGTGAGGAA+AGG 0.575028 tig0020315:-23537 Msa1379850:CDS
CAGCGAGATGAATAGGGTGA+AGG 0.575295 tig0020315:-20560 Msa1379850:CDS
GTGTCAACAGTGTGATATCT+GGG 0.575454 tig0020315:-20681 Msa1379850:CDS
AAATCATATCGAAGACACGC+AGG 0.576181 tig0020315:-20240 Msa1379850:CDS
GAGGAAGGCATGTTGGACTT+GGG 0.576737 tig0020315:-20340 Msa1379850:CDS
ACGACACCAGAAATCTGACC+TGG 0.577406 tig0020315:-21961 Msa1379850:CDS
AAAATAGATCATTCGGAGAG+AGG 0.578565 tig0020315:-21414 Msa1379850:CDS
CATTGGGTCAAAAGATCAGA+TGG 0.581037 tig0020315:-20998 Msa1379850:CDS
GGAAGAGGAATTAACTCTGA+GGG 0.583443 tig0020315:-20485 Msa1379850:CDS
GTATCTTGGTCAATGCTGCA+AGG 0.590088 tig0020315:+23758 None:intergenic
TTAGCAATTGTTCTGTAACC+CGG 0.590403 tig0020315:+20848 None:intergenic
TGAGAATGTCAGGAATCTTG+AGG 0.591834 tig0020315:-20899 Msa1379850:CDS
AATGCTTTCGACTCGAGTTG+AGG 0.594442 tig0020315:+22025 None:intergenic
GATGACAACCTTGAAGAGGA+TGG 0.594910 tig0020315:-24129 Msa1379850:CDS
AGATAAAGATCGTTTGTTGG+AGG 0.595739 tig0020315:-20524 Msa1379850:CDS
ACACAGCATGATCATCTGAC+AGG 0.595806 tig0020315:-24027 Msa1379850:CDS
CCACAAACAGAGCTGCCTGA+TGG 0.597178 tig0020315:+20300 None:intergenic
CCAGTTTACTGATCTCATCC+CGG 0.597565 tig0020315:+21463 None:intergenic
CAAGATACAAGAAGCAGACA+AGG 0.599113 tig0020315:-23743 Msa1379850:CDS
AATGCTTTCAACTCGAGTTG+AGG 0.603109 tig0020315:+22811 None:intergenic
GAGTTAAAGAAAAGGATCAA+AGG 0.606217 tig0020315:-24003 Msa1379850:CDS
TGAGTCCTCAAATCTTATCA+GGG 0.607053 tig0020315:-23176 Msa1379850:CDS
GAAGAAACTCAAAGATAATG+GGG 0.608727 tig0020315:-22957 Msa1379850:CDS
AAAGCAAATAAGTGCTAACC+GGG 0.615043 tig0020315:-21481 Msa1379850:CDS
AATTCAAAGTCTGAAAGAGG+AGG 0.615339 tig0020315:-22282 Msa1379850:CDS
GCTCTAAAGTGTTCAACTCG+CGG 0.617860 tig0020315:+21523 None:intergenic
CCCTTCGTGGATCTGAGTGA+GGG 0.618747 tig0020315:+23207 None:intergenic
ACAAATCACAAATCTGGGGA+TGG 0.618881 tig0020315:-23143 Msa1379850:CDS
AACAATAAGCCACAATCTGG+AGG 0.619268 tig0020315:-23377 Msa1379850:CDS
AATTCAAAGTCTGAAAGAGG+AGG 0.620184 tig0020315:-22675 Msa1379850:CDS
ATTAAAGCAAGAACTTGAAG+TGG 0.625206 tig0020315:-23857 Msa1379850:CDS
GGAAGATAGCTTTAGAAAGG+CGG 0.626186 tig0020315:-20818 Msa1379850:CDS
AATCATATCGAAGACACGCA+GGG 0.626640 tig0020315:-20239 Msa1379850:CDS
AATTCAGAGTCTGAAAGAGG+AGG 0.627004 tig0020315:-21889 Msa1379850:CDS
CGAGTGTAGTGACTATCTCA+AGG 0.629222 tig0020315:-20263 Msa1379850:CDS
CATGGGAGATGTTTGAGATG+TGG 0.632689 tig0020315:+20608 None:intergenic
GCTAAGAAGTTGGATATCAG+TGG 0.632704 tig0020315:-24438 Msa1379850:five_prime_UTR
TGACTTGGAAGTTCAGCTTG+TGG 0.632873 tig0020315:-22339 Msa1379850:CDS
TGACTTGGAAGTTCAGCTTG+TGG 0.632873 tig0020315:-22732 Msa1379850:CDS
GCGAGATGAATAGGGTGAAG+GGG 0.634109 tig0020315:-20558 Msa1379850:CDS
AATTTGAAGATGTAAAATGC+TGG 0.638723 tig0020315:-27436 Msa1379850:five_prime_UTR
CCACAATCTGGAGGTTACAG+AGG 0.642292 tig0020315:-23368 Msa1379850:CDS
TGATAAGTCAGTGATTGCAA+AGG 0.648880 tig0020315:-23470 Msa1379850:CDS
GATAAAGAAGAGCAGCTCCA+GGG 0.649142 tig0020315:-24350 Msa1379850:CDS
AGAGGCGAAGGCAAGAAAGG+AGG 0.649964 tig0020315:-20446 Msa1379850:CDS
CCCTCACTCAGATCCACGAA+GGG 0.650909 tig0020315:-23207 Msa1379850:CDS
GAATTTGAAAACTGATGCTG+AGG 0.656206 tig0020315:-23713 Msa1379850:CDS
ACACACAGAAGTCCTCAGAA+TGG 0.656732 tig0020315:-21211 Msa1379850:CDS
TGACCTGGAAGTTCAGCTTG+TGG 0.658835 tig0020315:-21946 Msa1379850:CDS
AGGAAGAGGAATTAACTCTG+AGG 0.661623 tig0020315:-20486 Msa1379850:CDS
GGAAAAGGTTGAGAAGCTAG+AGG 0.669571 tig0020315:-20464 Msa1379850:CDS
GATTATTCTTCAAAGGACAG+AGG 0.677313 tig0020315:-23928 Msa1379850:CDS
ATGGCAGAAGAGTTTCGTGA+AGG 0.678129 tig0020315:-21021 Msa1379850:CDS
AGCTCTCCAACAGATTGGTG+AGG 0.679320 tig0020315:-23542 Msa1379850:CDS
ACCCTCACTCAGATCCACGA+AGG 0.680192 tig0020315:-23208 Msa1379850:CDS
TGAGATAGTCACTACACTCG+CGG 0.682863 tig0020315:+20266 None:intergenic
AAGACAGAGAAAATTTAACC+AGG 0.687147 tig0020315:-21830 Msa1379850:CDS
CGTTTGTTGGAGGAACTGCA+GGG 0.687309 tig0020315:-20514 Msa1379850:CDS
TCAAACTTGAAGTTGCTGAG+AGG 0.688408 tig0020315:-21056 Msa1379850:CDS
ATCATATCGAAGACACGCAG+GGG 0.689585 tig0020315:-20238 Msa1379850:CDS
AGACACAAATCACAAATCTG+GGG 0.699067 tig0020315:-23147 Msa1379850:CDS
AGACCTGAAAAGAGACCTGG+AGG 0.702321 tig0020315:-20950 Msa1379850:CDS
GAAACATGATGAGAAAGACA+GGG 0.703452 tig0020315:-23239 Msa1379850:CDS
CTTGGGAGAGGAAAAGAGGG+AGG 0.705635 tig0020315:-20323 Msa1379850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCGTAAAATAATAATAA+TGG + tig0020315:20312-20331 None:intergenic 10.0%
!! ATTAAAAATAATCTATAAGT+TGG - tig0020315:21064-21083 Msa1379850:CDS 10.0%
!!! TATAACAATTATCAATATTT+TGG + tig0020315:21467-21486 None:intergenic 10.0%
!! AAATAAAAACATTGAAATAT+GGG + tig0020315:22062-22081 None:intergenic 10.0%
!! AAAATAAAAACATTGAAATA+TGG + tig0020315:22063-22082 None:intergenic 10.0%
!! ATAATAATTTAATGAAGATA+TGG + tig0020315:22541-22560 None:intergenic 10.0%
!!! AATATAAACAAATTGATAAT+TGG - tig0020315:26589-26608 Msa1379850:intron 10.0%
!! TGTAAACTTAATTAAACTAT+AGG - tig0020315:20348-20367 Msa1379850:CDS 15.0%
!! GAAATGAAAAATTTGAAAAA+CGG + tig0020315:20489-20508 None:intergenic 15.0%
!! ACAATAAATAATTCAGATTA+AGG + tig0020315:20779-20798 None:intergenic 15.0%
!! TTTATTAATCTTGTAAAAGA+TGG - tig0020315:20803-20822 Msa1379850:CDS 15.0%
!! TAAGAAATAAAAATCTAACA+AGG - tig0020315:20866-20885 Msa1379850:CDS 15.0%
!! ATCAACTATTATTATTACTT+TGG + tig0020315:20904-20923 None:intergenic 15.0%
!!! TTATCAATATTTTGGTAAAT+TGG + tig0020315:21459-21478 None:intergenic 15.0%
!!! TTTTTTTTCCATTTTTTTCT+TGG - tig0020315:21551-21570 Msa1379850:CDS 15.0%
!! AAAGATTGTATAATTATTTG+GGG + tig0020315:22039-22058 None:intergenic 15.0%
!! GAAAGATTGTATAATTATTT+GGG + tig0020315:22040-22059 None:intergenic 15.0%
!! TTAACATAAGATGATATAAA+TGG + tig0020315:22956-22975 None:intergenic 15.0%
!!! GTAATTGTATATTTTTTGAA+TGG + tig0020315:23007-23026 None:intergenic 15.0%
!!! AATTATTTTTCTTTTCCTTT+AGG - tig0020315:23080-23099 Msa1379850:CDS 15.0%
!!! AATAATAATGGAATGAAAAG+TGG + tig0020315:20300-20319 None:intergenic 20.0%
!!! AATAATAGTTGATAAGTTAG+CGG - tig0020315:20911-20930 Msa1379850:CDS 20.0%
!!! ATTAAATTAGCTTAGTCAAT+TGG - tig0020315:21186-21205 Msa1379850:CDS 20.0%
!!! AATTTTTTCCTTTTCTTTGT+AGG - tig0020315:21349-21368 Msa1379850:CDS 20.0%
!! AAAACTTGAAGCAATATTTA+AGG - tig0020315:21425-21444 Msa1379850:CDS 20.0%
!!! CGTTTCTTTCTTTTATTTTT+TGG - tig0020315:21694-21713 Msa1379850:CDS 20.0%
!! CGTTAATTAATTAAGAGTTT+GGG - tig0020315:21842-21861 Msa1379850:CDS 20.0%
!! GGAAAGATTGTATAATTATT+TGG + tig0020315:22041-22060 None:intergenic 20.0%
!! TCTTTAGTTGTCAATTATAT+AGG + tig0020315:22309-22328 None:intergenic 20.0%
!! ATATAATTGACAACTAAAGA+TGG - tig0020315:22309-22328 Msa1379850:CDS 20.0%
!! TAATTTAATGAAGATATGGA+GGG + tig0020315:22537-22556 None:intergenic 20.0%
!! ATAATTTAATGAAGATATGG+AGG + tig0020315:22538-22557 None:intergenic 20.0%
!!! ATATAAATGGTTGAGATTTT+AGG + tig0020315:22943-22962 None:intergenic 20.0%
!!! TTGTATATTTTTTGAATGGA+TGG + tig0020315:23003-23022 None:intergenic 20.0%
!! AAAATGTAAAATAACAGTGT+AGG + tig0020315:23043-23062 None:intergenic 20.0%
!! AAATTGAAGACAAAGTTAAA+AGG - tig0020315:23514-23533 Msa1379850:CDS 20.0%
!!! GATACAAATATCAAAACTTT+TGG - tig0020315:24001-24020 Msa1379850:CDS 20.0%
!! TAAGAATCTTCAACTTAATT+TGG - tig0020315:26041-26060 Msa1379850:intron 20.0%
!!! TAATTGGTTTAATGAATACA+AGG - tig0020315:26605-26624 Msa1379850:intron 20.0%
! AATTTCATGAATGGAATCTT+TGG + tig0020315:20232-20251 None:intergenic 25.0%
! ACATCTTCAAATTTCATGAA+TGG + tig0020315:20241-20260 None:intergenic 25.0%
! AATTTGAAGATGTAAAATGC+TGG - tig0020315:20248-20267 Msa1379850:CDS 25.0%
! GATGATAATAAAAACACCAA+AGG + tig0020315:21265-21284 None:intergenic 25.0%
! TAACATAATCCCCAATATAT+AGG + tig0020315:21501-21520 None:intergenic 25.0%
! ACTACTATCCAAGAAAAAAA+TGG + tig0020315:21562-21581 None:intergenic 25.0%
! AATCCGTATAGCTTAAAATT+TGG - tig0020315:21809-21828 Msa1379850:CDS 25.0%
! GCGTTAATTAATTAAGAGTT+TGG - tig0020315:21841-21860 Msa1379850:CDS 25.0%
! TGGTTTAGTAACAGTAATTA+TGG - tig0020315:21874-21893 Msa1379850:CDS 25.0%
!! TGTTTCATATGATGGAAATT+GGG + tig0020315:21992-22011 None:intergenic 25.0%
!! ATGTTTCATATGATGGAAAT+TGG + tig0020315:21993-22012 None:intergenic 25.0%
! ACTACTAATGTTTCATATGA+TGG + tig0020315:22000-22019 None:intergenic 25.0%
! ATGGAATACATTAAGTATCA+AGG - tig0020315:22328-22347 Msa1379850:CDS 25.0%
!!! ATTTGTTTTGGATAGTTAGT+CGG + tig0020315:22670-22689 None:intergenic 25.0%
!!! TATGGTTGTTTGATTTGTTT+TGG + tig0020315:22682-22701 None:intergenic 25.0%
!! TTTCGTTAGTAGAGATATTT+TGG + tig0020315:22724-22743 None:intergenic 25.0%
! ATATCTCTACTAACGAAATA+TGG - tig0020315:22726-22745 Msa1379850:CDS 25.0%
!!! AGTTAAGGTTTAATTTGCTT+TGG + tig0020315:22907-22926 None:intergenic 25.0%
!!! GAATCTGTTTTTTTACCTAA+AGG + tig0020315:23098-23117 None:intergenic 25.0%
! TATTTGATATTTGAGCAATG+AGG + tig0020315:23154-23173 None:intergenic 25.0%
! ATCAATTGTTGATCAACATA+AGG + tig0020315:23468-23487 None:intergenic 25.0%
!!! AAATCAATTGGTATTGATTG+TGG + tig0020315:23635-23654 None:intergenic 25.0%
! GAGTTTCAAAAGATAATTGA+TGG - tig0020315:23804-23823 Msa1379850:CDS 25.0%
! ATCTGAATTAAGTCAGTTAA+AGG - tig0020315:24421-24440 Msa1379850:exon 25.0%
!!! TCATTTCAAGTTCTGAAATT+TGG + tig0020315:24670-24689 None:intergenic 25.0%
! ATGAAGAAACTCAAAGATAA+TGG - tig0020315:24725-24744 Msa1379850:intron 25.0%
! TGAAGAAACTCAAAGATAAT+GGG - tig0020315:24726-24745 Msa1379850:intron 25.0%
!! AGATGTCAAATCTGATATTT+TGG + tig0020315:24765-24784 None:intergenic 25.0%
! TTGAATTTGAATTGAACACT+CGG + tig0020315:24996-25015 None:intergenic 25.0%
!! TTTTACAAAAGAAAGAGAAG+AGG - tig0020315:25081-25100 Msa1379850:intron 25.0%
! ATGATTCATTCTCATTATCT+TGG + tig0020315:25132-25151 None:intergenic 25.0%
!! AGATGTCAAATCTGATATTT+TGG + tig0020315:24765-24784 None:intergenic 25.0%
!! TTTTACAAAAGAAAGAGAAG+CGG - tig0020315:25081-25100 Msa1379850:intron 25.0%
!! AGATGTCAAATCTGATATTT+TGG + tig0020315:24765-24784 None:intergenic 25.0%
! ATCTCAGATAGAAAATTTGT+TGG - tig0020315:25567-25586 Msa1379850:intron 25.0%
AAACTTAGAGATAGAGAGTT+AGG + tig0020315:20416-20435 None:intergenic 30.0%
GTTGAAAAAGAAGATGATGA+AGG + tig0020315:20443-20462 None:intergenic 30.0%
AAAACCATATCCAATTTCTG+CGG + tig0020315:20725-20744 None:intergenic 30.0%
TTCTGCTCTTTACTTTACTT+TGG - tig0020315:20839-20858 Msa1379850:CDS 30.0%
!! ATAAGTTGGTGAAAAAGTGA+AGG - tig0020315:21078-21097 Msa1379850:CDS 30.0%
! CTAGTATTTCTATTTGCCTT+TGG - tig0020315:21246-21265 Msa1379850:CDS 30.0%
GCTTAATAGATTCAGAAAAG+AGG - tig0020315:21394-21413 Msa1379850:CDS 30.0%
GATTCAGAAAAGAGGATATA+AGG - tig0020315:21402-21421 Msa1379850:CDS 30.0%
!! AGAGTATTGAGCCTATATAT+TGG - tig0020315:21487-21506 Msa1379850:CDS 30.0%
!! GAGTATTGAGCCTATATATT+GGG - tig0020315:21488-21507 Msa1379850:CDS 30.0%
! AGTATTGAGCCTATATATTG+GGG - tig0020315:21489-21508 Msa1379850:CDS 30.0%
!!! CAAGATGCACTTATTTTTGA+AGG + tig0020315:21757-21776 None:intergenic 30.0%
! GGTCCAAATTTTAAGCTATA+CGG + tig0020315:21815-21834 None:intergenic 30.0%
TTAATTAATTAACGCACCAC+TGG + tig0020315:21836-21855 None:intergenic 30.0%
ACTGTTACTAAACCAAAATG+TGG + tig0020315:21869-21888 None:intergenic 30.0%
TGTCAAAAAGATACTAGATG+CGG + tig0020315:21903-21922 None:intergenic 30.0%
CGGATTATATGTGATTAACT+GGG + tig0020315:21961-21980 None:intergenic 30.0%
! ACGGATTATATGTGATTAAC+TGG + tig0020315:21962-21981 None:intergenic 30.0%
AGATAGCAAACAATACAAAG+AGG - tig0020315:22162-22181 Msa1379850:CDS 30.0%
!! TCATGATTGTTTGGTTTGAT+TGG + tig0020315:22205-22224 None:intergenic 30.0%
!! TCAATTATATAGGCTCTGAA+GGG + tig0020315:22299-22318 None:intergenic 30.0%
! AATTGGAGTTTTCATTATGC+AGG + tig0020315:22626-22645 None:intergenic 30.0%
AATGTTTGTTCAGTCTGAAT+TGG + tig0020315:22643-22662 None:intergenic 30.0%
AATTAAGAACCTGAGAGTTA+TGG + tig0020315:22700-22719 None:intergenic 30.0%
CAGATTAGATGATGTTATGT+TGG + tig0020315:22850-22869 None:intergenic 30.0%
AAAGAGCTATCTTAAGATCA+TGG + tig0020315:22876-22895 None:intergenic 30.0%
! CTTAAGATAGCTCTTTTGAT+AGG - tig0020315:22880-22899 Msa1379850:CDS 30.0%
ACTTGATATTGCTAAGAAGT+TGG - tig0020315:23236-23255 Msa1379850:CDS 30.0%
GAGTTAAAGAAAAGGATCAA+AGG - tig0020315:23681-23700 Msa1379850:CDS 30.0%
ATTAAAGCAAGAACTTGAAG+TGG - tig0020315:23827-23846 Msa1379850:CDS 30.0%
TACTGAACTAAATAAGCAAC+TGG - tig0020315:24031-24050 Msa1379850:CDS 30.0%
AAACCTAGTTGATCAATTGA+AGG - tig0020315:24190-24209 Msa1379850:intron 30.0%
GCAAAACGAGAAAAAAGATA+TGG - tig0020315:24577-24596 Msa1379850:intron 30.0%
AAACGAGAAAAAAGATATGG+AGG - tig0020315:24580-24599 Msa1379850:intron 30.0%
GAAGAAACTCAAAGATAATG+GGG - tig0020315:24727-24746 Msa1379850:intron 30.0%
TCAAATTCAAAGTCTGAAAG+AGG - tig0020315:25006-25025 Msa1379850:intron 30.0%
ATCTCAGATAGACAATTTGT+TGG - tig0020315:25174-25193 Msa1379850:intron 30.0%
! TTGAACACTCTGAATTTTCT+TGG + tig0020315:25378-25397 None:intergenic 30.0%
TCAAATTCAAAGTCTGAAAG+AGG - tig0020315:25006-25025 Msa1379850:intron 30.0%
CTGAATTTGAATTGAACACT+CGG + tig0020315:25782-25801 None:intergenic 30.0%
AAGACAGAGAAAATTTAACC+AGG - tig0020315:25854-25873 Msa1379850:intron 30.0%
!!! TTTGCTATTTTTGCTCTTGA+TGG + tig0020315:25911-25930 None:intergenic 30.0%
TCTCCAGGATAAAATTCATA+TGG - tig0020315:25972-25991 Msa1379850:intron 30.0%
!! ATTCTTAATTTGCTCACCAA+AGG + tig0020315:26028-26047 None:intergenic 30.0%
AGCAGACAAAATAGATCATT+CGG - tig0020315:26263-26282 Msa1379850:five_prime_UTR 30.0%
GCTTCAGGATAAACTTTATA+AGG - tig0020315:26323-26342 Msa1379850:intron 30.0%
!! TCAAGTTGACAATCTGAAAA+AGG - tig0020315:26386-26405 Msa1379850:intron 30.0%
!!! TTCTTCTTTTGTTTTCTGCA+AGG + tig0020315:26421-26440 None:intergenic 30.0%
GCAGAAAACAAAAGAAGAAT+TGG - tig0020315:26422-26441 Msa1379850:intron 30.0%
TGAATTAGCCAACAAAAACA+TGG - tig0020315:26512-26531 Msa1379850:intron 30.0%
AGAACAATTGCTAAGTGAAA+AGG - tig0020315:26845-26864 Msa1379850:intron 30.0%
!! AAAGGAAGATAGCTTTAGAA+AGG - tig0020315:26863-26882 Msa1379850:intron 30.0%
ATGAAAAGCTTCATTGTTAG+CGG + tig0020315:26958-26977 None:intergenic 30.0%
TGTTGTTGAACTTAAGAAGA+CGG - tig0020315:27289-27308 Msa1379850:five_prime_UTR 30.0%
!!! TTCTTTTTCAACTCTCACAG+AGG - tig0020315:20451-20470 Msa1379850:CDS 35.0%
TGAAGTGAAAACGAAGAAGA+AGG + tig0020315:20511-20530 None:intergenic 35.0%
!!! GCTCTTTAGTTTTCAGCTTT+TGG - tig0020315:20583-20602 Msa1379850:CDS 35.0%
TTTGTATACTCCGCAGAAAT+TGG - tig0020315:20712-20731 Msa1379850:CDS 35.0%
CAGATTAAGGATCAAGATAC+AGG + tig0020315:20766-20785 None:intergenic 35.0%
AGCGGAAAAACTTATACTAG+TGG - tig0020315:20929-20948 Msa1379850:CDS 35.0%
ATATACTGATACTGAGTAGC+AGG + tig0020315:21225-21244 None:intergenic 35.0%
ATTCTTGAAAGTTGTTGTCG+TGG - tig0020315:21632-21651 Msa1379850:CDS 35.0%
CACGATTCTATTACTGAGAA+CGG + tig0020315:21786-21805 None:intergenic 35.0%
TAGCTTAAAATTTGGACCAG+TGG - tig0020315:21817-21836 Msa1379850:CDS 35.0%
ATGGAAATTGGGTTCAGTTA+CGG + tig0020315:21981-22000 None:intergenic 35.0%
! ATTTGGGGTTTATTCGAACA+AGG + tig0020315:22024-22043 None:intergenic 35.0%
TTAAAAAACTCCACATGCAC+AGG - tig0020315:22124-22143 Msa1379850:CDS 35.0%
AGGTTGTGTTCATGATTGTT+TGG + tig0020315:22214-22233 None:intergenic 35.0%
!! CAATTATATAGGCTCTGAAG+GGG + tig0020315:22298-22317 None:intergenic 35.0%
! GTCAATTATATAGGCTCTGA+AGG + tig0020315:22300-22319 None:intergenic 35.0%
ATTAGAATGCTATGAGGCTT+GGG + tig0020315:22379-22398 None:intergenic 35.0%
CAACAGATTAGAATGCTATG+AGG + tig0020315:22385-22404 None:intergenic 35.0%
!! GTTATACTTGGCTTGCAAAA+TGG + tig0020315:22423-22442 None:intergenic 35.0%
! TGCAGTATAGGTGTTATACT+TGG + tig0020315:22435-22454 None:intergenic 35.0%
TTTCCTAAAGTGAAGTACAC+TGG + tig0020315:22490-22509 None:intergenic 35.0%
! TTCACTTTAGGAAACCAAAC+AGG - tig0020315:22496-22515 Msa1379850:CDS 35.0%
!! ATATGGAGGGATTGTTGTTT+GGG + tig0020315:22524-22543 None:intergenic 35.0%
GTGGAGAAAACATGTATCAT+CGG + tig0020315:22566-22585 None:intergenic 35.0%
!! TTCATTATGCAGGTTGGTTT+GGG + tig0020315:22616-22635 None:intergenic 35.0%
!! TTTCATTATGCAGGTTGGTT+TGG + tig0020315:22617-22636 None:intergenic 35.0%
ATCAAACAACCATAACTCTC+AGG - tig0020315:22688-22707 Msa1379850:CDS 35.0%
AGCTATATGGATAGAAGTGA+GGG + tig0020315:22768-22787 None:intergenic 35.0%
ATATCATTTCAGCTGTCATG+GGG + tig0020315:23400-23419 None:intergenic 35.0%
GATATCATTTCAGCTGTCAT+GGG + tig0020315:23401-23420 None:intergenic 35.0%
TGATATCATTTCAGCTGTCA+TGG + tig0020315:23402-23421 None:intergenic 35.0%
TGACAGCTGAAATGATATCA+TGG - tig0020315:23402-23421 Msa1379850:CDS 35.0%
TGATATCATGGAAGATCACT+AGG - tig0020315:23414-23433 Msa1379850:CDS 35.0%
TAAAGATGACAACCTTGAAG+AGG - tig0020315:23551-23570 Msa1379850:CDS 35.0%
!! CTCAGCAGAAATTTTGAAGA+GGG - tig0020315:23581-23600 Msa1379850:CDS 35.0%
CATGCTGTGTGTAAATCAAT+TGG + tig0020315:23647-23666 None:intergenic 35.0%
TGACAGGTGAGTTAAAGAAA+AGG - tig0020315:23673-23692 Msa1379850:CDS 35.0%
GGATTCGGATTATTCTTCAA+AGG - tig0020315:23749-23768 Msa1379850:CDS 35.0%
GATTATTCTTCAAAGGACAG+AGG - tig0020315:23756-23775 Msa1379850:CDS 35.0%
GAATTTGAAAACTGATGCTG+AGG - tig0020315:23971-23990 Msa1379850:CDS 35.0%
AGCTGAACTGAGTCAAAAAT+TGG - tig0020315:24073-24092 Msa1379850:CDS 35.0%
TGAACTGAGTCAAAAATTGG+AGG - tig0020315:24076-24095 Msa1379850:CDS 35.0%
GAAGACAGAAAACAATAGCT+TGG - tig0020315:24103-24122 Msa1379850:CDS 35.0%
ATTGATCAACTAGGTTTCTC+AGG + tig0020315:24187-24206 None:intergenic 35.0%
CATCCTTCAATTGATCAACT+AGG + tig0020315:24196-24215 None:intergenic 35.0%
TGATAAGTCAGTGATTGCAA+AGG - tig0020315:24214-24233 Msa1379850:intron 35.0%
AACAACAATAAGCCACAATC+TGG - tig0020315:24304-24323 Msa1379850:intron 35.0%
AGAAACATGATGAGAAAGAC+AGG - tig0020315:24444-24463 Msa1379850:five_prime_UTR 35.0%
GAAACATGATGAGAAAGACA+GGG - tig0020315:24445-24464 Msa1379850:five_prime_UTR 35.0%
ATGAGTCCTCAAATCTTATC+AGG - tig0020315:24507-24526 Msa1379850:intron 35.0%
TGAGTCCTCAAATCTTATCA+GGG - tig0020315:24508-24527 Msa1379850:intron 35.0%
TAGTTCCCTGATAAGATTTG+AGG + tig0020315:24516-24535 None:intergenic 35.0%
AGAGACACAAATCACAAATC+TGG - tig0020315:24535-24554 Msa1379850:intron 35.0%
GAGACACAAATCACAAATCT+GGG - tig0020315:24536-24555 Msa1379850:intron 35.0%
AGACACAAATCACAAATCTG+GGG - tig0020315:24537-24556 Msa1379850:intron 35.0%
!!! TTCCAGTTCTCTTTTTTCAG+TGG + tig0020315:24624-24643 None:intergenic 35.0%
TAGTTCCTCTTCTCTTTCTT+TGG + tig0020315:24696-24715 None:intergenic 35.0%
! TTGAACACTCGGAATTTTCT+TGG + tig0020315:24985-25004 None:intergenic 35.0%
AATTCAAAGTCTGAAAGAGG+AGG - tig0020315:25009-25028 Msa1379850:intron 35.0%
TATAAGTCTCTCTTGTTCCA+GGG + tig0020315:25047-25066 None:intergenic 35.0%
! AATGCTTTCGACTTGATTTG+AGG + tig0020315:25269-25288 None:intergenic 35.0%
AATTCAAAGTCTGAAAGAGG+AGG - tig0020315:25009-25028 Msa1379850:intron 35.0%
ACATGCTCAGAAAAATGAAC+TGG - tig0020315:25213-25232 Msa1379850:intron 35.0%
! TTGAACACTCGGAATTTTCT+TGG + tig0020315:24985-25004 None:intergenic 35.0%
TCAAATTCAGAGTCTGAAAG+AGG - tig0020315:25792-25811 Msa1379850:intron 35.0%
GCAAAGATGAAGAGCAAATA+AGG - tig0020315:25926-25945 Msa1379850:intron 35.0%
! CTGCCATATGAATTTTATCC+TGG + tig0020315:25978-25997 None:intergenic 35.0%
ATTCATATGGCAGAGATAGA+AGG - tig0020315:25985-26004 Msa1379850:intron 35.0%
! TCTTCAACTTAATTTGGCAC+AGG - tig0020315:26047-26066 Msa1379850:intron 35.0%
CAAAGCAAATAAGTGCTAAC+CGG - tig0020315:26202-26221 Msa1379850:intron 35.0%
AAAGCAAATAAGTGCTAACC+GGG - tig0020315:26203-26222 Msa1379850:intron 35.0%
TAAACTGGCACAGGAAAATT+TGG - tig0020315:26236-26255 Msa1379850:intron 35.0%
AAAATAGATCATTCGGAGAG+AGG - tig0020315:26270-26289 Msa1379850:five_prime_UTR 35.0%
GGATAAACTTTATAAGGCAG+AGG - tig0020315:26329-26348 Msa1379850:intron 35.0%
TTTCATTGTCAACCATTCTG+AGG + tig0020315:26488-26507 None:intergenic 35.0%
!! CTGAAGATCCATGTTTTTGT+TGG + tig0020315:26523-26542 None:intergenic 35.0%
TGAGAGGAAAATGGAAGAAA+TGG - tig0020315:26644-26663 Msa1379850:intron 35.0%
AGATCAGATGGTAACTGATT+TGG - tig0020315:26698-26717 Msa1379850:intron 35.0%
TTAGCAATTGTTCTGTAACC+CGG + tig0020315:26839-26858 None:intergenic 35.0%
! CTCATGATTTTTGCTTTCGT+CGG + tig0020315:27054-27073 None:intergenic 35.0%
GAGAGATAAAGATCGTTTGT+TGG - tig0020315:27157-27176 Msa1379850:intron 35.0%
! AGATAAAGATCGTTTGTTGG+AGG - tig0020315:27160-27179 Msa1379850:intron 35.0%
!! GAAGTTGATGAAAGAGAAAG+AGG - tig0020315:27325-27344 Msa1379850:five_prime_UTR 35.0%
TTGATGAAAGAGAAAGAGGA+AGG - tig0020315:27329-27348 Msa1379850:five_prime_UTR 35.0%
AGAGATAGAGAGTTAGGAAG+AGG + tig0020315:20410-20429 None:intergenic 40.0%
TACTCCGCAGAAATTGGATA+TGG - tig0020315:20718-20737 Msa1379850:CDS 40.0%
TGCAGCAACCTACAAAGAAA+AGG + tig0020315:21360-21379 None:intergenic 40.0%
!! AAGAGTTTGGGACCACATTT+TGG - tig0020315:21854-21873 Msa1379850:CDS 40.0%
GATTAGAATGCTATGAGGCT+TGG + tig0020315:22380-22399 None:intergenic 40.0%
CTATTGGATGGTTGCAGTAT+AGG + tig0020315:22447-22466 None:intergenic 40.0%
ATACTGCAACCATCCAATAG+AGG - tig0020315:22447-22466 Msa1379850:CDS 40.0%
CAACCAGTGTACTTCACTTT+AGG - tig0020315:22484-22503 Msa1379850:CDS 40.0%
! GATATGGAGGGATTGTTGTT+TGG + tig0020315:22525-22544 None:intergenic 40.0%
! GTAGAGGTGTAATTCTTGTG+TGG + tig0020315:22585-22604 None:intergenic 40.0%
! GGAGTTTTCATTATGCAGGT+TGG + tig0020315:22622-22641 None:intergenic 40.0%
CAGCTATATGGATAGAAGTG+AGG + tig0020315:22769-22788 None:intergenic 40.0%
!! AGGTGTTGTTTGCAGCTATA+TGG + tig0020315:22781-22800 None:intergenic 40.0%
AACCTTAACTGAGATGATGC+AGG - tig0020315:22917-22936 Msa1379850:CDS 40.0%
! ATTTTCAGCTCTTCACTTCC+TGG - tig0020315:23185-23204 Msa1379850:CDS 40.0%
TTCACTTCCTGGAATCTACA+TGG - tig0020315:23196-23215 Msa1379850:CDS 40.0%
TTGTTCACCATGTAGATTCC+AGG + tig0020315:23206-23225 None:intergenic 40.0%
GCTAAGAAGTTGGATATCAG+TGG - tig0020315:23246-23265 Msa1379850:CDS 40.0%
TTGGATATCAGTGGAGAAGA+TGG - tig0020315:23255-23274 Msa1379850:CDS 40.0%
CCTCTTCAAAATTTCTGCTG+AGG + tig0020315:23583-23602 None:intergenic 40.0%
!! CCTCAGCAGAAATTTTGAAG+AGG - tig0020315:23580-23599 Msa1379850:CDS 40.0%
TCCTCAATCAATTCAGCAAG+CGG + tig0020315:23609-23628 None:intergenic 40.0%
ATCAAAGGCAAGCGAGAAAA+AGG - tig0020315:23696-23715 Msa1379850:CDS 40.0%
! ATCCAGCTCTGATTCAGATT+CGG - tig0020315:23728-23747 Msa1379850:CDS 40.0%
CTCTGATTCAGATTCGGATT+CGG - tig0020315:23734-23753 Msa1379850:CDS 40.0%
GACAGTTACACATGAAGAGA+AGG - tig0020315:23884-23903 Msa1379850:CDS 40.0%
CTTGTCTGCTTCTTGTATCT+TGG + tig0020315:23943-23962 None:intergenic 40.0%
CAAGATACAAGAAGCAGACA+AGG - tig0020315:23941-23960 Msa1379850:CDS 40.0%
AATAAGCAACTGGACATTGC+TGG - tig0020315:24041-24060 Msa1379850:CDS 40.0%
AGAAAACAATAGCTTGGCCA+TGG - tig0020315:24109-24128 Msa1379850:CDS 40.0%
AACAATAAGCCACAATCTGG+AGG - tig0020315:24307-24326 Msa1379850:intron 40.0%
ACAAATCACAAATCTGGGGA+TGG - tig0020315:24541-24560 Msa1379850:intron 40.0%
CACCACTGAAAAAAGAGAAC+TGG - tig0020315:24619-24638 Msa1379850:intron 40.0%
GAAGTCCAAAGAAAGAGAAG+AGG - tig0020315:24688-24707 Msa1379850:intron 40.0%
ACATGCTCAGAAAACTGAAC+TGG - tig0020315:24820-24839 Msa1379850:intron 40.0%
! AATGCTTTCAACTCGAGTTG+AGG + tig0020315:24876-24895 None:intergenic 40.0%
ACAACACCAGAAATCTGACT+TGG - tig0020315:24937-24956 Msa1379850:intron 40.0%
GAACTTCCAAGTCAGATTTC+TGG + tig0020315:24946-24965 None:intergenic 40.0%
CTATAAGTCTCTCTTGTTCC+AGG + tig0020315:25048-25067 None:intergenic 40.0%
ACAACACCAGAAATCTGACT+TGG - tig0020315:24937-24956 Msa1379850:intron 40.0%
GAACTTCCAAGTCAGATTTC+TGG + tig0020315:24946-24965 None:intergenic 40.0%
CATAAGTCTCTCTTGTTCCA+GGG + tig0020315:25440-25459 None:intergenic 40.0%
AATTCAGAGTCTGAAAGAGG+AGG - tig0020315:25795-25814 Msa1379850:intron 40.0%
CATAAGTCTCTCTTGTTCCA+GGG + tig0020315:25440-25459 None:intergenic 40.0%
AACCAGGCAGATAAAGAATC+TGG - tig0020315:25870-25889 Msa1379850:intron 40.0%
TTCCAGATTCTTTATCTGCC+TGG + tig0020315:25875-25894 None:intergenic 40.0%
! GCAGATAAAGAATCTGGAAC+TGG - tig0020315:25876-25895 Msa1379850:intron 40.0%
ATGATTGATCACTTGGACGT+TGG + tig0020315:25953-25972 None:intergenic 40.0%
TCAACCCAAATAGTTGCCTT+TGG - tig0020315:26009-26028 Msa1379850:intron 40.0%
CTCACCAAAGGCAACTATTT+GGG + tig0020315:26016-26035 None:intergenic 40.0%
CAAAAAAATGGAGTTGGAGC+TGG - tig0020315:26086-26105 Msa1379850:intron 40.0%
ACTTTATAAGGCAGAGGAAG+AGG - tig0020315:26335-26354 Msa1379850:intron 40.0%
ATTGTCAACTTGAGCTGTGA+AGG + tig0020315:26379-26398 None:intergenic 40.0%
CATGGATCTTCAGAGAACAT+TGG - tig0020315:26530-26549 Msa1379850:intron 40.0%
TCAAACTTGAAGTTGCTGAG+AGG - tig0020315:26628-26647 Msa1379850:intron 40.0%
TGAAGTTGCTGAGAGGAAAA+TGG - tig0020315:26635-26654 Msa1379850:intron 40.0%
!! AAGAGTTTCGTGAAGGCATT+GGG - tig0020315:26670-26689 Msa1379850:intron 40.0%
CATTGGGTCAAAAGATCAGA+TGG - tig0020315:26686-26705 Msa1379850:intron 40.0%
! GCACTTTGTTTGAGAATGTC+AGG - tig0020315:26775-26794 Msa1379850:intron 40.0%
TGAGAATGTCAGGAATCTTG+AGG - tig0020315:26785-26804 Msa1379850:intron 40.0%
!! GGAAGATAGCTTTAGAAAGG+CGG - tig0020315:26866-26885 Msa1379850:intron 40.0%
TTCAGAGAGAACTTGAAGAC+AGG - tig0020315:26907-26926 Msa1379850:intron 40.0%
TGTGTCAACAGTGTGATATC+TGG - tig0020315:27002-27021 Msa1379850:intron 40.0%
GTGTCAACAGTGTGATATCT+GGG - tig0020315:27003-27022 Msa1379850:intron 40.0%
! TTTTGCAACCTGAAGCTCAT+GGG + tig0020315:27096-27115 None:intergenic 40.0%
AATCTGTCAGCGAGATGAAT+AGG - tig0020315:27117-27136 Msa1379850:five_prime_UTR 40.0%
ATCTGTCAGCGAGATGAATA+GGG - tig0020315:27118-27137 Msa1379850:five_prime_UTR 40.0%
AGGAAGAGGAATTAACTCTG+AGG - tig0020315:27198-27217 Msa1379850:intron 40.0%
GGAAGAGGAATTAACTCTGA+GGG - tig0020315:27199-27218 Msa1379850:intron 40.0%
! GGAATTAACTCTGAGGGAAA+AGG - tig0020315:27205-27224 Msa1379850:intron 40.0%
TGAACTTAAGAAGACGGTTG+AGG - tig0020315:27295-27314 Msa1379850:five_prime_UTR 40.0%
AAATCATATCGAAGACACGC+AGG - tig0020315:27444-27463 Msa1379850:five_prime_UTR 40.0%
AATCATATCGAAGACACGCA+GGG - tig0020315:27445-27464 Msa1379850:five_prime_UTR 40.0%
CTTGAAAGTTGTTGTCGTGG+CGG - tig0020315:21635-21654 Msa1379850:CDS 45.0%
CTGTAGCTGAGTTGTAGTCT+TGG - tig0020315:21662-21681 Msa1379850:CDS 45.0%
TAGCGCAAACACATGTTGCA+GGG + tig0020315:22086-22105 None:intergenic 45.0%
ATAGCGCAAACACATGTTGC+AGG + tig0020315:22087-22106 None:intergenic 45.0%
! AGTTTGGCAGTGTGGCTTTT+AGG + tig0020315:22234-22253 None:intergenic 45.0%
GGTTGATTGCCTCTATTGGA+TGG + tig0020315:22459-22478 None:intergenic 45.0%
! GAGAGGTTGATTGCCTCTAT+TGG + tig0020315:22463-22482 None:intergenic 45.0%
! TGAAGTACACTGGTTGTGAG+AGG + tig0020315:22480-22499 None:intergenic 45.0%
!! TTGTTGTTTGGGCTCCTGTT+TGG + tig0020315:22513-22532 None:intergenic 45.0%
TAATTGGGAAGGCTGTGTCA+AGG + tig0020315:22801-22820 None:intergenic 45.0%
CTGGCTGGAAATAATTGGGA+AGG + tig0020315:22812-22831 None:intergenic 45.0%
!! CGTGCTGGCTGGAAATAATT+GGG + tig0020315:22816-22835 None:intergenic 45.0%
!! TCGTGCTGGCTGGAAATAAT+TGG + tig0020315:22817-22836 None:intergenic 45.0%
GGAGCTGCTCTTCTTTATCA+GGG + tig0020315:23333-23352 None:intergenic 45.0%
TGGAGCTGCTCTTCTTTATC+AGG + tig0020315:23334-23353 None:intergenic 45.0%
TGATAAAGAAGAGCAGCTCC+AGG - tig0020315:23333-23352 Msa1379850:CDS 45.0%
GATAAAGAAGAGCAGCTCCA+GGG - tig0020315:23334-23353 Msa1379850:CDS 45.0%
GATGACAACCTTGAAGAGGA+TGG - tig0020315:23555-23574 Msa1379850:CDS 45.0%
! ACCGCTTGCTGAATTGATTG+AGG - tig0020315:23605-23624 Msa1379850:CDS 45.0%
ACACAGCATGATCATCTGAC+AGG - tig0020315:23657-23676 Msa1379850:CDS 45.0%
ATCCGAATCTGAATCAGAGC+TGG + tig0020315:23733-23752 None:intergenic 45.0%
AAGGACAGAGGCAGCAAAAA+TGG - tig0020315:23768-23787 Msa1379850:CDS 45.0%
AGAACTTGAAGTGGCGCATA+AGG - tig0020315:23836-23855 Msa1379850:CDS 45.0%
GTATCTTGGTCAATGCTGCA+AGG + tig0020315:23929-23948 None:intergenic 45.0%
TCCAACAGATTGGTGAGGAA+AGG - tig0020315:24147-24166 Msa1379850:CDS 45.0%
TCCTTTCCTCACCAATCTGT+TGG + tig0020315:24151-24170 None:intergenic 45.0%
GCTGTCTCAGAACAGAATAC+AGG - tig0020315:24391-24410 Msa1379850:CDS 45.0%
ACTCATTCTTATGCCCTTCG+TGG + tig0020315:24493-24512 None:intergenic 45.0%
! GAACTGGAAGAGCGCAATTT+AGG - tig0020315:24635-24654 Msa1379850:intron 45.0%
TGAGCTGAATGTATTGCAGC+AGG - tig0020315:24901-24920 Msa1379850:intron 45.0%
GAATGTATTGCAGCAGGAAG+TGG - tig0020315:24907-24926 Msa1379850:intron 45.0%
! TGACTTGGAAGTTCAGCTTG+TGG - tig0020315:24952-24971 Msa1379850:intron 45.0%
TGAGCTGAATGTATTGCAGC+AGG - tig0020315:24901-24920 Msa1379850:intron 45.0%
GAATGTATTGCAGCAGGAAG+TGG - tig0020315:24907-24926 Msa1379850:intron 45.0%
! TGACTTGGAAGTTCAGCTTG+TGG - tig0020315:24952-24971 Msa1379850:intron 45.0%
CCATAAGTCTCTCTTGTTCC+AGG + tig0020315:25441-25460 None:intergenic 45.0%
CCTGGAACAAGAGAGACTTA+TGG - tig0020315:25045-25064 Msa1379850:intron 45.0%
! AATGCTTTCGACTCGAGTTG+AGG + tig0020315:25662-25681 None:intergenic 45.0%
TGAGCTGAATGTATTGCAGC+AGG - tig0020315:24901-24920 Msa1379850:intron 45.0%
GAATGTATTGCAGCAGGAAG+TGG - tig0020315:24907-24926 Msa1379850:intron 45.0%
GAACTTCCAGGTCAGATTTC+TGG + tig0020315:25732-25751 None:intergenic 45.0%
TTTCCACAAGCTGAACTTCC+AGG + tig0020315:24958-24977 None:intergenic 45.0%
CCATAAGTCTCTCTTGTTCC+AGG + tig0020315:25441-25460 None:intergenic 45.0%
CCTGGAACAAGAGAGACTTA+TGG - tig0020315:25045-25064 Msa1379850:intron 45.0%
CCTGGAGATGATTGATCACT+TGG + tig0020315:25960-25979 None:intergenic 45.0%
CCAAGTGATCAATCATCTCC+AGG - tig0020315:25957-25976 Msa1379850:intron 45.0%
GCTCACCAAAGGCAACTATT+TGG + tig0020315:26017-26036 None:intergenic 45.0%
GCAGCGCAAAAAAATGGAGT+TGG - tig0020315:26080-26099 Msa1379850:intron 45.0%
GCTCTTCAACTTCACTCTTC+TGG + tig0020315:26125-26144 None:intergenic 45.0%
!! GCTCTAAAGTGTTCAACTCG+CGG + tig0020315:26164-26183 None:intergenic 45.0%
CCAGTTTACTGATCTCATCC+CGG + tig0020315:26224-26243 None:intergenic 45.0%
TGAGATCAGTAAACTGGCAC+AGG - tig0020315:26227-26246 Msa1379850:intron 45.0%
! ATTTGAGTTCTCTGCGCTTC+AGG - tig0020315:26308-26327 Msa1379850:five_prime_UTR 45.0%
ACACACAGAAGTCCTCAGAA+TGG - tig0020315:26473-26492 Msa1379850:intron 45.0%
ATGGCAGAAGAGTTTCGTGA+AGG - tig0020315:26663-26682 Msa1379850:intron 45.0%
! GAAGAGTTTCGTGAAGGCAT+TGG - tig0020315:26669-26688 Msa1379850:intron 45.0%
TGAAGACCTGAAAAGAGACC+TGG - tig0020315:26731-26750 Msa1379850:intron 45.0%
AAAAGAGACCTGGAGGAGAA+AGG - tig0020315:26741-26760 Msa1379850:intron 45.0%
TGAAGACAGGATTGCTACTC+TGG - tig0020315:26920-26939 Msa1379850:intron 45.0%
! CATGGGAGATGTTTGAGATG+TGG + tig0020315:27079-27098 None:intergenic 45.0%
AAACATCTCCCATGAGCTTC+AGG - tig0020315:27085-27104 Msa1379850:five_prime_UTR 45.0%
! CTTTTGCAACCTGAAGCTCA+TGG + tig0020315:27097-27116 None:intergenic 45.0%
AGCGAGATGAATAGGGTGAA+GGG - tig0020315:27125-27144 Msa1379850:intron 45.0%
ACTGCAGGGTAAAAAGGAAG+AGG - tig0020315:27184-27203 Msa1379850:intron 45.0%
GGAAAAGGTTGAGAAGCTAG+AGG - tig0020315:27220-27239 Msa1379850:intron 45.0%
! AGAGAAAGAGGAAGGCATGT+TGG - tig0020315:27337-27356 Msa1379850:five_prime_UTR 45.0%
TGAGATAGTCACTACACTCG+CGG + tig0020315:27421-27440 None:intergenic 45.0%
CGAGTGTAGTGACTATCTCA+AGG - tig0020315:27421-27440 Msa1379850:five_prime_UTR 45.0%
ATCATATCGAAGACACGCAG+GGG - tig0020315:27446-27465 Msa1379850:five_prime_UTR 45.0%
!! AAAATACAAAAAAAAAAAAA+GGG + tig0020315:21933-21952 None:intergenic 5.0%
!! TAAAATACAAAAAAAAAAAA+AGG + tig0020315:21934-21953 None:intergenic 5.0%
!!! TTTTTTTTTTTTTGTATTTT+AGG - tig0020315:21933-21952 Msa1379850:CDS 5.0%
!!! TTTTTTTTTTTTGTATTTTA+GGG - tig0020315:21934-21953 Msa1379850:CDS 5.0%
TTGTGCACATCCTGTGCATG+TGG + tig0020315:22137-22156 None:intergenic 50.0%
ATGCACAGGATGTGCACAAG+TGG - tig0020315:22138-22157 Msa1379850:CDS 50.0%
CTGCCAAACTGTGCAGGAAT+TGG - tig0020315:22244-22263 Msa1379850:CDS 50.0%
GTGCCAATTCCTGCACAGTT+TGG + tig0020315:22250-22269 None:intergenic 50.0%
GGTTTGGGAGATTGCAGTAG+AGG + tig0020315:22601-22620 None:intergenic 50.0%
TTGGTTGTGTCTCATCGTGC+TGG + tig0020315:22831-22850 None:intergenic 50.0%
GGCCTGCATCATCTCAGTTA+AGG + tig0020315:22922-22941 None:intergenic 50.0%
!!! TCGTACCTGTTTTAGCTCCC+TGG + tig0020315:23354-23373 None:intergenic 50.0%
CATGGGGCAGAGTGTAATTG+TGG + tig0020315:23384-23403 None:intergenic 50.0%
! CTGAGGTACCATCCTCTTCA+AGG + tig0020315:23566-23585 None:intergenic 50.0%
GAGAGCTGTCTCTTTCTCCA+TGG + tig0020315:24129-24148 None:intergenic 50.0%
GAGACAGCTCTCCAACAGAT+TGG - tig0020315:24137-24156 Msa1379850:CDS 50.0%
AGCTCTCCAACAGATTGGTG+AGG - tig0020315:24142-24161 Msa1379850:CDS 50.0%
CCTCTGTAACCTCCAGATTG+TGG + tig0020315:24319-24338 None:intergenic 50.0%
CCACAATCTGGAGGTTACAG+AGG - tig0020315:24316-24335 Msa1379850:intron 50.0%
GGAGGTTGACAGAAAATCCC+TGG - tig0020315:25027-25046 Msa1379850:intron 50.0%
GGAGGTTAGCAGAAAATCCC+TGG - tig0020315:25420-25439 Msa1379850:intron 50.0%
ACGACACCAGAAATCTGACC+TGG - tig0020315:25723-25742 Msa1379850:intron 50.0%
TGACCTGGAAGTTCAGCTTG+TGG - tig0020315:25738-25757 Msa1379850:intron 50.0%
GGAGGTTGACAGAAAATCCC+TGG - tig0020315:25027-25046 Msa1379850:intron 50.0%
AGCGCAGCAGCGCAAAAAAA+TGG - tig0020315:26074-26093 Msa1379850:intron 50.0%
! TTCACTCTTCTGGCTGCGTA+TGG + tig0020315:26115-26134 None:intergenic 50.0%
AGTGTTCAACTCGCGGTCTT+TGG + tig0020315:26157-26176 None:intergenic 50.0%
CCGGGATGAGATCAGTAAAC+TGG - tig0020315:26221-26240 Msa1379850:intron 50.0%
AGACCTGAAAAGAGACCTGG+AGG - tig0020315:26734-26753 Msa1379850:intron 50.0%
! TCTCCTCCAGGTCTCTTTTC+AGG + tig0020315:26740-26759 None:intergenic 50.0%
CTTCATCTCCTTTCTCCTCC+AGG + tig0020315:26752-26771 None:intergenic 50.0%
GCCTGTCAAACCAAAAGCTC+CGG - tig0020315:26817-26836 Msa1379850:intron 50.0%
CCTGTCAAACCAAAAGCTCC+GGG - tig0020315:26818-26837 Msa1379850:intron 50.0%
! GTTCTGTAACCCGGAGCTTT+TGG + tig0020315:26830-26849 None:intergenic 50.0%
CTGGGATAGATACTGTGAGC+AGG - tig0020315:27021-27040 Msa1379850:intron 50.0%
CAGCGAGATGAATAGGGTGA+AGG - tig0020315:27124-27143 Msa1379850:intron 50.0%
GCGAGATGAATAGGGTGAAG+GGG - tig0020315:27126-27145 Msa1379850:intron 50.0%
! TCGTTTGTTGGAGGAACTGC+AGG - tig0020315:27169-27188 Msa1379850:intron 50.0%
! CGTTTGTTGGAGGAACTGCA+GGG - tig0020315:27170-27189 Msa1379850:intron 50.0%
GGAGGAACTGCAGGGTAAAA+AGG - tig0020315:27178-27197 Msa1379850:intron 50.0%
! AGAGGAAGGCATGTTGGACT+TGG - tig0020315:27343-27362 Msa1379850:five_prime_UTR 50.0%
! GAGGAAGGCATGTTGGACTT+GGG - tig0020315:27344-27363 Msa1379850:five_prime_UTR 50.0%
TGGACTTGGGAGAGGAAAAG+AGG - tig0020315:27357-27376 Msa1379850:five_prime_UTR 50.0%
GGACTTGGGAGAGGAAAAGA+GGG - tig0020315:27358-27377 Msa1379850:five_prime_UTR 50.0%
TCCTGCACAGTTTGGCAGTG+TGG + tig0020315:22242-22261 None:intergenic 55.0%
! TTGTGTCTCATCGTGCTGGC+TGG + tig0020315:22827-22846 None:intergenic 55.0%
CAGCTCCAGGGAGCTAAAAC+AGG - tig0020315:23346-23365 Msa1379850:CDS 55.0%
ACCCTCACTCAGATCCACGA+AGG - tig0020315:24476-24495 Msa1379850:five_prime_UTR 55.0%
CCCTTCGTGGATCTGAGTGA+GGG + tig0020315:24480-24499 None:intergenic 55.0%
CCCTCACTCAGATCCACGAA+GGG - tig0020315:24477-24496 Msa1379850:five_prime_UTR 55.0%
AAGGCAGAGGAAGAGGCTTC+AGG - tig0020315:26342-26361 Msa1379850:intron 55.0%
!!! CCCGGAGCTTTTGGTTTGAC+AGG + tig0020315:26821-26840 None:intergenic 55.0%
GGTTGAGAAGCTAGAGGCGA+AGG - tig0020315:27226-27245 Msa1379850:intron 55.0%
GCTAGAGGCGAAGGCAAGAA+AGG - tig0020315:27235-27254 Msa1379850:five_prime_UTR 55.0%
AGAGGCGAAGGCAAGAAAGG+AGG - tig0020315:27238-27257 Msa1379850:five_prime_UTR 55.0%
AGGCATGTTGGACTTGGGAG+AGG - tig0020315:27349-27368 Msa1379850:five_prime_UTR 55.0%
CTTGGGAGAGGAAAAGAGGG+AGG - tig0020315:27361-27380 Msa1379850:five_prime_UTR 55.0%
AGGAAAAGAGGGAGGCCATC+AGG - tig0020315:27369-27388 Msa1379850:five_prime_UTR 55.0%
CCACAAACAGAGCTGCCTGA+TGG + tig0020315:27387-27406 None:intergenic 55.0%
CCATCAGGCAGCTCTGTTTG+TGG - tig0020315:27384-27403 Msa1379850:five_prime_UTR 55.0%
GCCACACTGCCAAACTGTGC+AGG - tig0020315:22238-22257 Msa1379850:CDS 60.0%
GCCCTTCGTGGATCTGAGTG+AGG + tig0020315:24481-24500 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0020315 gene 20222 27484 20222 ID=Msa1379850;Name=Msa1379850
tig0020315 mRNA 20222 27484 20222 ID=Msa1379850-mRNA-1;Parent=Msa1379850;Name=Msa1379850-mRNA-1;_AED=0.26;_eAED=0.26;_QI=492|1|0.8|1|0.25|0.4|5|0|1354
tig0020315 exon 20222 24192 20222 ID=Msa1379850-mRNA-1:exon:6872;Parent=Msa1379850-mRNA-1
tig0020315 exon 24339 24513 24339 ID=Msa1379850-mRNA-1:exon:6871;Parent=Msa1379850-mRNA-1
tig0020315 exon 26260 26335 26260 ID=Msa1379850-mRNA-1:exon:6870;Parent=Msa1379850-mRNA-1
tig0020315 exon 27056 27139 27056 ID=Msa1379850-mRNA-1:exon:6869;Parent=Msa1379850-mRNA-1
tig0020315 exon 27234 27484 27234 ID=Msa1379850-mRNA-1:exon:6868;Parent=Msa1379850-mRNA-1
tig0020315 five_prime_UTR 27234 27484 27234 ID=Msa1379850-mRNA-1:five_prime_utr;Parent=Msa1379850-mRNA-1
tig0020315 five_prime_UTR 27056 27139 27056 ID=Msa1379850-mRNA-1:five_prime_utr;Parent=Msa1379850-mRNA-1
tig0020315 five_prime_UTR 26260 26335 26260 ID=Msa1379850-mRNA-1:five_prime_utr;Parent=Msa1379850-mRNA-1
tig0020315 five_prime_UTR 24433 24513 24433 ID=Msa1379850-mRNA-1:five_prime_utr;Parent=Msa1379850-mRNA-1
tig0020315 CDS 24339 24432 24339 ID=Msa1379850-mRNA-1:cds;Parent=Msa1379850-mRNA-1
tig0020315 CDS 20222 24192 20222 ID=Msa1379850-mRNA-1:cds;Parent=Msa1379850-mRNA-1
Gene Sequence

>Msa1379850

ATGGTGAAACATCACTTGAGAAAGTCTATAAAATCGCTGTTTGAAAGTCACATTGACCCTGATAAAGAAGAGCAGCTCCAGGGAGCTAAAACAGAAATTGAAGACAAAGTTAAAAGGATATTGAAACTTATTAAAGATGACAACCTTGAAGAGGATGGTACCTCAGCAGAAATTTTGAAGAGGGAACCGCTTGCTGAATTGATTGAGGATATCCACAATCAATACCAATTGATTTACACACAGCATGATCATCTGACAGGTGAGTTAAAGAAAAGGATCAAAGGCAAGCGAGAAAAAGGAAGTTCTTCATCCAGCTCTGATTCAGATTCGGATTCGGATTATTCTTCAAAGGACAGAGGCAGCAAAAATGGTCAACTGCAAAATGAGTTTCAAAAGATAATTGATGGATTAAAGCAAGAACTTGAAGTGGCGCATAAGGAAGTCGCTGACTTAAATCAGAAGTTGACAGTTACACATGAAGAGAAGGAGAACATAAGTTCAAAACACCTTGCAGCATTGACCAAGATACAAGAAGCAGACAAGGTTAGTATGAATTTGAAAACTGATGCTGAGGCATTTGAGATACAAATATCAAAACTTTTGGCTGAGAATACTGAACTAAATAAGCAACTGGACATTGCTGGTAGAGTAGAAGCTGAACTGAGTCAAAAATTGGAGGATATGAAGACAGAAAACAATAGCTTGGCCATGGAGAAAGAGACAGCTCTCCAACAGATTGGTGAGGAAAGGAAGATTACAGATGACCTGAGAAACCTAGTTGATCAATTGAAGGATGATAAGTCAGTGATTGCAAAGGAATTACAAGCAGCAACAGATGAACTTTCTATTCTGAAGCAGCAATTGAAACATGCAGAACAACAAATAACAACAATAAGCCACAATCTGGAGGTTACAGAGGAAGAAAATAAATCATTAAAAGCAGAAATTTCACAAGCTTCAAATGAGATTCAGCTGTCTCAGAACAGAATACAGGAATTTGCATCTGAATTAAGTCAGTTAAAGGAGAAACATGATGAGAAAGACAGGGAAGTGTCAACCCTCACTCAGATCCACGAAGGGCATAAGAATGAGTCCTCAAATCTTATCAGGGAACTAGAGACACAAATCACAAATCTGGGGATGGAATTAGCATCACTGCAAAACGAGAAAAAAGATATGGAGGATCAACTTAAGAGCAGCACCACTGAAAAAAGAGAACTGGAAGAGCGCAATTTAGGCTTGCTAAACCAAATTTCAGAACTTGAAATGAAGTCCAAAGAAAGAGAAGAGGAACTATCTGCTATCATGAAGAAACTCAAAGATAATGGGGATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGACAATTTGCTCGCTGATTTAAGCTCATTACATGCTCAGAAAACTGAACTGGAAGAGCAAATAATTTTTAAAAGTAATGAAGCCTCAACTCGAGTTGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACAACACCAGAAATCTGACTTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCCGAGTGTTCAATTCAAATTCAAAGTCTGAAAGAGGAGGTTGACAGAAAATCCCTGGAACAAGAGAGACTTATAGAAGACAGAGAACATTTTACAAAAGAAAGAGAAGAGGAACTATCTGATATCATGAAGAAACTCCAAGATAATGAGAATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGACAATTTGTTGGCTGATATTAGCTCATTACATGCTCAGAAAAATGAACTGGAAGAGCAAATAATTTTTAAAAGTAATGAAGCCTCAAATCAAGTCGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACAACACCAGAAATCTGACTTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCAGAGTGTTCAATTCAAATTCAAAGTCTGAAAGAGGAGGTTAGCAGAAAATCCCTGGAACAAGAGAGACTTATGGAAGACAGAGAAAATTTTACAAAAGAAAGAGAAGCGGAACTATCTGATATCATGAAGAAACTCAAAGATAATGAGAATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGAAAATTTGTTGGCTGATATTAGCTCATTACATGCTCAGAAAAATGAACTGGAAGAGCAAATTATTTTTAAAAGTAATGAAGCCTCAACTCGAGTCGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACGACACCAGAAATCTGACCTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCCGAGTGTTCAATTCAAATTCAGAGTCTGAAAGAGGAGGTTGACAGAAAATCCCTGGAACAAGAGAGACTTATGGAAGACAGAGAAAATTTAACCAGGCAGATAAAGAATCTGGAACTGGAGATAAGCTCCATCAAGAGCAAAAATAGCAAAGATGAAGAGCAAATAAGGACCAACGTCCAAGTGATCAATCATCTCCAGGATAAAATTCATATGGCAGAGATAGAAGGTTCAACCCAAATAGTTGCCTTTGGTGAGCAAATTAAGAATCTTCAACTTAATTTGGCACAGGAACTAGCGCAGCAGCGCAAAAAAATGGAGTTGGAGCTGGATTCCATACGCAGCCAGAAGAGTGAAGTTGAAGAGCAGTTAAGAGCCAAAGACCGCGAGTTGAACACTTTAGAGCAAAAAGAAAGTGAATACGCAAAGCAAATAAGTGCTAACCGGGATGAGATCAGTAAACTGGCACAGGAAAATTTGGAGCTAGCAGACAAAATAGATCATTCGGAGAGAGGATTAGCAACAAGAGAATTTGAGTTCTCTGCGCTTCAGGATAAACTTTATAAGGCAGAGGAAGAGGCTTCAGGAAAAACAATTGCCTTCACAGCTCAAGTTGACAATCTGAAAAAGGACTTGCTTTCCTTGCAGAAAACAAAAGAAGAATTGGAGCTCTGCTGTGAAAATATCAAAGAAGAACACACAGAAGTCCTCAGAATGGTTGACAATGAAAAGAATGAATTAGCCAACAAAAACATGGATCTTCAGAGAACATTGGAAGAACGAGAAGATGCATATCAGAAGTTGAATGAAGAATATAAACAAATTGATAATTGGTTTAATGAATACAAGGTCAAACTTGAAGTTGCTGAGAGGAAAATGGAAGAAATGGCAGAAGAGTTTCGTGAAGGCATTGGGTCAAAAGATCAGATGGTAACTGATTTGGAACAGCAAGTTGAAGACCTGAAAAGAGACCTGGAGGAGAAAGGAGATGAAGTCAGCACTTTGTTTGAGAATGTCAGGAATCTTGAGGTAAAGCTTCGCCTGTCAAACCAAAAGCTCCGGGTTACAGAACAATTGCTAAGTGAAAAGGAAGATAGCTTTAGAAAGGCGGAACAAGAGTTTCAGCAAGTTCAGAGAGAACTTGAAGACAGGATTGCTACTCTGGTAGCTACAATCACCGCTAACAATGAAGCTTTTCATGAAACTATCACAAGTGTTAAAGTGTGTGTCAACAGTGTGATATCTGGGATAGATACTGTGAGCAGGAAATTTTCCGACGAAAGCAAAAATCATGAGAACCACATCTCAAACATCTCCCATGAGCTTCAGGTTGCAAAAGAATCTGTCAGCGAGATGAATAGGGTGAAGGGGCAGTTACAGAGAGATAAAGATCGTTTGTTGGAGGAACTGCAGGGTAAAAAGGAAGAGGAATTAACTCTGAGGGAAAAGGTTGAGAAGCTAGAGGCGAAGGCAAGAAAGGAGGAATCAGAGAAGATGAATGTGACATCAACTGTTGTTGAACTTAAGAAGACGGTTGAGGCGCTAGAGAAGTTGATGAAAGAGAAAGAGGAAGGCATGTTGGACTTGGGAGAGGAAAAGAGGGAGGCCATCAGGCAGCTCTGTTTGTGGATTGATTATCACCGCGAGTGTAGTGACTATCTCAAGGAAATCATATCGAAGACACGCAGGGGCCAGAGAGCAGCATAA

Protein sequence

>Msa1379850

MVKHHLRKSIKSLFESHIDPDKEEQLQGAKTEIEDKVKRILKLIKDDNLEEDGTSAEILKREPLAELIEDIHNQYQLIYTQHDHLTGELKKRIKGKREKGSSSSSSDSDSDSDYSSKDRGSKNGQLQNEFQKIIDGLKQELEVAHKEVADLNQKLTVTHEEKENISSKHLAALTKIQEADKVSMNLKTDAEAFEIQISKLLAENTELNKQLDIAGRVEAELSQKLEDMKTENNSLAMEKETALQQIGEERKITDDLRNLVDQLKDDKSVIAKELQAATDELSILKQQLKHAEQQITTISHNLEVTEEENKSLKAEISQASNEIQLSQNRIQEFASELSQLKEKHDEKDREVSTLTQIHEGHKNESSNLIRELETQITNLGMELASLQNEKKDMEDQLKSSTTEKRELEERNLGLLNQISELEMKSKEREEELSAIMKKLKDNGDESSSKISDLTSQIDNLLADLSSLHAQKTELEEQIIFKSNEASTRVESITNELNVLQQEVESLQHQKSDLEVQLVEKSQENSECSIQIQSLKEEVDRKSLEQERLIEDREHFTKEREEELSDIMKKLQDNENESSSKISDLTSQIDNLLADISSLHAQKNELEEQIIFKSNEASNQVESITNELNVLQQEVESLQHQKSDLEVQLVEKSQENSECSIQIQSLKEEVSRKSLEQERLMEDRENFTKEREAELSDIMKKLKDNENESSSKISDLTSQIENLLADISSLHAQKNELEEQIIFKSNEASTRVESITNELNVLQQEVESLRHQKSDLEVQLVEKSQENSECSIQIQSLKEEVDRKSLEQERLMEDRENLTRQIKNLELEISSIKSKNSKDEEQIRTNVQVINHLQDKIHMAEIEGSTQIVAFGEQIKNLQLNLAQELAQQRKKMELELDSIRSQKSEVEEQLRAKDRELNTLEQKESEYAKQISANRDEISKLAQENLELADKIDHSERGLATREFEFSALQDKLYKAEEEASGKTIAFTAQVDNLKKDLLSLQKTKEELELCCENIKEEHTEVLRMVDNEKNELANKNMDLQRTLEEREDAYQKLNEEYKQIDNWFNEYKVKLEVAERKMEEMAEEFREGIGSKDQMVTDLEQQVEDLKRDLEEKGDEVSTLFENVRNLEVKLRLSNQKLRVTEQLLSEKEDSFRKAEQEFQQVQRELEDRIATLVATITANNEAFHETITSVKVCVNSVISGIDTVSRKFSDESKNHENHISNISHELQVAKESVSEMNRVKGQLQRDKDRLLEELQGKKEEELTLREKVEKLEAKARKEESEKMNVTSTVVELKKTVEALEKLMKEKEEGMLDLGEEKREAIRQLCLWIDYHRECSDYLKEIISKTRRGQRAA*