AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0436370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436370 MtrunA17_Chr8g0387891 94.239 1354 78 0 1 1354 1 1354 0.0 2435
Msa0436370 MtrunA17_Chr8g0387911 65.527 702 163 7 687 1354 3 659 0.0 796
Msa0436370 MtrunA17_Chr8g0387911 33.333 687 315 21 423 1024 1 629 2.49e-49 187
Msa0436370 MtrunA17_Chr8g0387881 28.044 813 452 15 551 1348 83 777 7.11e-60 221
Msa0436370 MtrunA17_Chr8g0387881 30.328 366 229 7 340 683 99 460 6.87e-20 96.3
Msa0436370 MtrunA17_Chr8g0387901 84.286 70 11 0 1285 1354 1 70 9.28e-25 99.0
Msa0436370 MtrunA17_Chr5g0432781 23.711 582 361 18 7 544 18 560 2.41e-13 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436370 AT5G41790.1 29.458 1273 621 34 137 1352 528 1580 2.47e-83 301
Msa0436370 AT5G41790.1 31.299 770 456 12 1 746 1 721 2.14e-60 229
Msa0436370 AT5G41790.2 29.458 1273 621 34 137 1352 528 1580 2.47e-83 301
Msa0436370 AT5G41790.2 31.299 770 456 12 1 746 1 721 2.14e-60 229
Msa0436370 AT1G64330.1 42.017 238 117 4 1 238 1 217 1.42e-38 153
Msa0436370 AT5G41780.2 28.571 308 159 8 1039 1345 284 531 5.93e-15 80.1
Msa0436370 AT5G41780.3 28.571 308 159 8 1039 1345 284 531 5.93e-15 80.1
Msa0436370 AT5G41780.1 28.571 308 159 8 1039 1345 284 531 5.93e-15 80.1
Msa0436370 AT5G41780.4 28.571 308 159 8 1039 1345 284 531 5.93e-15 80.1
Msa0436370 AT1G64320.2 32.609 184 121 1 359 539 105 288 3.05e-14 78.2
Msa0436370 AT1G64320.2 24.809 653 337 21 706 1347 109 618 1.18e-11 69.7
Msa0436370 AT1G64320.1 32.609 184 121 1 359 539 105 288 3.05e-14 78.2
Msa0436370 AT1G64320.1 24.809 653 337 21 706 1347 109 618 1.18e-11 69.7

Find 239 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTTCAAGTTCTGAAATT+TGG 0.142967 3_2:+89930116 None:intergenic
TAAGAATCTTCAACTTAATT+TGG 0.157767 3_2:-89928742 Msa0436370:CDS
GAACTTCCAGGTCAGATTTC+TGG 0.200021 3_2:+89929054 None:intergenic
AATATAAACAAATTGATAAT+TGG 0.205472 3_2:-89928194 Msa0436370:CDS
AAAACTTGAAGCAATATTTA+AGG 0.207712 3_2:-89933358 Msa0436370:intron
TGGAGCTGCTCTTCTTTATC+AGG 0.210060 3_2:+89931452 None:intergenic
GCTCACCAAAGGCAACTATT+TGG 0.214310 3_2:+89928769 None:intergenic
AGATGTCAAATCTGATATTT+TGG 0.218858 3_2:+89929235 None:intergenic
AGATGTCAAATCTGATATTT+TGG 0.218858 3_2:+89929628 None:intergenic
AGATGTCAAATCTGATATTT+TGG 0.218858 3_2:+89930021 None:intergenic
TAGTTCCTCTTCTCTTTCTT+TGG 0.220995 3_2:+89930090 None:intergenic
ATCTGAATTAAGTCAGTTAA+AGG 0.235617 3_2:-89930362 Msa0436370:CDS
AATTTCATGAATGGAATCTT+TGG 0.249338 3_2:+89934554 None:intergenic
TAAACTGGCACAGGAAAATT+TGG 0.249711 3_2:-89928547 Msa0436370:CDS
CTTGTCTGCTTCTTGTATCT+TGG 0.254462 3_2:+89930843 None:intergenic
ATGAGTCCTCAAATCTTATC+AGG 0.261640 3_2:-89930276 Msa0436370:CDS
GAACTTCCAAGTCAGATTTC+TGG 0.263958 3_2:+89929447 None:intergenic
GAACTTCCAAGTCAGATTTC+TGG 0.263958 3_2:+89929840 None:intergenic
ATCAAAGGCAAGCGAGAAAA+AGG 0.270364 3_2:-89931087 Msa0436370:CDS
TCAAGTTGACAATCTGAAAA+AGG 0.281841 3_2:-89928397 Msa0436370:CDS
CCATAAGTCTCTCTTGTTCC+AGG 0.283572 3_2:+89928952 None:intergenic
CCATAAGTCTCTCTTGTTCC+AGG 0.283572 3_2:+89929345 None:intergenic
GCAAAGATGAAGAGCAAATA+AGG 0.284452 3_2:-89928857 Msa0436370:CDS
ATGAAGAAACTCAAAGATAA+TGG 0.288409 3_2:-89930058 Msa0436370:CDS
GATTCAGAAAAGAGGATATA+AGG 0.290887 3_2:-89933381 Msa0436370:five_prime_UTR
CTATAAGTCTCTCTTGTTCC+AGG 0.293435 3_2:+89929738 None:intergenic
GCTCTTCAACTTCACTCTTC+TGG 0.295087 3_2:+89928661 None:intergenic
GCTTCAGGATAAACTTTATA+AGG 0.298812 3_2:-89928460 Msa0436370:CDS
GATACAAATATCAAAACTTT+TGG 0.303373 3_2:-89930782 Msa0436370:CDS
TTTCCACAAGCTGAACTTCC+AGG 0.314911 3_2:+89929042 None:intergenic
AGATCAGATGGTAACTGATT+TGG 0.316800 3_2:-89928085 Msa0436370:CDS
ATGATTCATTCTCATTATCT+TGG 0.317997 3_2:+89929654 None:intergenic
CTCACCAAAGGCAACTATTT+GGG 0.320192 3_2:+89928770 None:intergenic
GTTCTGTAACCCGGAGCTTT+TGG 0.321991 3_2:+89927956 None:intergenic
TGTAAACTTAATTAAACTAT+AGG 0.326875 3_2:-89934435 Msa0436370:five_prime_UTR
AAACTTAGAGATAGAGAGTT+AGG 0.328511 3_2:+89934370 None:intergenic
GAGTTTCAAAAGATAATTGA+TGG 0.329519 3_2:-89930979 Msa0436370:CDS
ATTTGAGTTCTCTGCGCTTC+AGG 0.332437 3_2:-89928475 Msa0436370:CDS
GCAGAAAACAAAAGAAGAAT+TGG 0.332606 3_2:-89928361 Msa0436370:CDS
TGAAGAAACTCAAAGATAAT+GGG 0.336542 3_2:-89930057 Msa0436370:CDS
TGAAGTTGCTGAGAGGAAAA+TGG 0.336584 3_2:-89928148 Msa0436370:CDS
GAACTGGAAGAGCGCAATTT+AGG 0.347892 3_2:-89930148 Msa0436370:CDS
AGAGACACAAATCACAAATC+TGG 0.348240 3_2:-89930248 Msa0436370:CDS
GGAGGAACTGCAGGGTAAAA+AGG 0.350540 3_2:-89927605 Msa0436370:CDS
AGTGTTCAACTCGCGGTCTT+TGG 0.356053 3_2:+89928629 None:intergenic
AATCTGTCAGCGAGATGAAT+AGG 0.370727 3_2:-89927666 Msa0436370:CDS
CTCTGATTCAGATTCGGATT+CGG 0.379482 3_2:-89931049 Msa0436370:CDS
AAATTGAAGACAAAGTTAAA+AGG 0.385979 3_2:-89931269 Msa0436370:CDS
CCATCAGGCAGCTCTGTTTG+TGG 0.387435 3_2:-89927399 Msa0436370:CDS
CTGAGGTACCATCCTCTTCA+AGG 0.389764 3_2:+89931220 None:intergenic
AAGGCAGAGGAAGAGGCTTC+AGG 0.392378 3_2:-89928441 Msa0436370:CDS
AAACATCTCCCATGAGCTTC+AGG 0.394831 3_2:-89927698 Msa0436370:CDS
CAAAGCAAATAAGTGCTAAC+CGG 0.397945 3_2:-89928581 Msa0436370:CDS
CCTGGAGATGATTGATCACT+TGG 0.398053 3_2:+89928826 None:intergenic
TCCTTTCCTCACCAATCTGT+TGG 0.398228 3_2:+89930635 None:intergenic
AACCAGGCAGATAAAGAATC+TGG 0.399619 3_2:-89928913 Msa0436370:CDS
TTCCAGATTCTTTATCTGCC+TGG 0.400921 3_2:+89928911 None:intergenic
AGAGGAAGGCATGTTGGACT+TGG 0.402054 3_2:-89927440 Msa0436370:CDS
ACATCTTCAAATTTCATGAA+TGG 0.402182 3_2:+89934545 None:intergenic
ATCCAGCTCTGATTCAGATT+CGG 0.402519 3_2:-89931055 Msa0436370:CDS
GCACTTTGTTTGAGAATGTC+AGG 0.405597 3_2:-89928008 Msa0436370:CDS
CTTCATCTCCTTTCTCCTCC+AGG 0.406034 3_2:+89928034 None:intergenic
TTGTTCACCATGTAGATTCC+AGG 0.410812 3_2:+89931580 None:intergenic
AGGAAAAGAGGGAGGCCATC+AGG 0.414307 3_2:-89927414 Msa0436370:CDS
GCCTGTCAAACCAAAAGCTC+CGG 0.415656 3_2:-89927966 Msa0436370:CDS
CAGCTCCAGGGAGCTAAAAC+AGG 0.419836 3_2:-89931437 Msa0436370:intron
ATTGATCAACTAGGTTTCTC+AGG 0.421379 3_2:+89930599 None:intergenic
TAGTTCCCTGATAAGATTTG+AGG 0.422432 3_2:+89930270 None:intergenic
TCAACCCAAATAGTTGCCTT+TGG 0.424305 3_2:-89928774 Msa0436370:CDS
AACAACAATAAGCCACAATC+TGG 0.428884 3_2:-89930479 Msa0436370:CDS
TGAAGACAGGATTGCTACTC+TGG 0.430102 3_2:-89927863 Msa0436370:CDS
GAAGTTGATGAAAGAGAAAG+AGG 0.436821 3_2:-89927458 Msa0436370:CDS
AAGAGTTTCGTGAAGGCATT+GGG 0.436849 3_2:-89928113 Msa0436370:CDS
ATTCATATGGCAGAGATAGA+AGG 0.439111 3_2:-89928798 Msa0436370:CDS
TCGTTTGTTGGAGGAACTGC+AGG 0.439419 3_2:-89927614 Msa0436370:CDS
AGCAGACAAAATAGATCATT+CGG 0.441030 3_2:-89928520 Msa0436370:CDS
AGAAACATGATGAGAAAGAC+AGG 0.442189 3_2:-89930339 Msa0436370:CDS
AATGCTTTCGACTTGATTTG+AGG 0.442769 3_2:+89929517 None:intergenic
TGAGAGGAAAATGGAAGAAA+TGG 0.442900 3_2:-89928139 Msa0436370:CDS
ACTTGATATTGCTAAGAAGT+TGG 0.446043 3_2:-89931547 Msa0436370:five_prime_UTR
CCTGGAACAAGAGAGACTTA+TGG 0.446554 3_2:-89928952 Msa0436370:CDS
CCTGGAACAAGAGAGACTTA+TGG 0.446554 3_2:-89929345 Msa0436370:CDS
TGTGTCAACAGTGTGATATC+TGG 0.447261 3_2:-89927781 Msa0436370:CDS
AGAACTTGAAGTGGCGCATA+AGG 0.448377 3_2:-89930947 Msa0436370:CDS
TTGGATATCAGTGGAGAAGA+TGG 0.448774 3_2:-89931528 Msa0436370:exon
TACTGAACTAAATAAGCAAC+TGG 0.449051 3_2:-89930752 Msa0436370:CDS
AATAAGCAACTGGACATTGC+TGG 0.450405 3_2:-89930742 Msa0436370:CDS
GAAGAGTTTCGTGAAGGCAT+TGG 0.453185 3_2:-89928114 Msa0436370:CDS
CATAAGTCTCTCTTGTTCCA+GGG 0.454250 3_2:+89928953 None:intergenic
CATAAGTCTCTCTTGTTCCA+GGG 0.454250 3_2:+89929346 None:intergenic
GAAGGACTTATGCTGCTCTC+TGG 0.459241 3_2:+89927314 None:intergenic
ACTCATTCTTATGCCCTTCG+TGG 0.460651 3_2:+89930293 None:intergenic
CCGGGATGAGATCAGTAAAC+TGG 0.460817 3_2:-89928562 Msa0436370:CDS
ATCTCAGATAGAAAATTTGT+TGG 0.461527 3_2:-89929216 Msa0436370:CDS
GGACTTGGGAGAGGAAAAGA+GGG 0.461535 3_2:-89927425 Msa0436370:CDS
AATAATAATGGAATGAAAAG+TGG 0.461986 3_2:+89934486 None:intergenic
GAGACACAAATCACAAATCT+GGG 0.465332 3_2:-89930247 Msa0436370:CDS
GAATGTATTGCAGCAGGAAG+TGG 0.465976 3_2:-89929090 Msa0436370:CDS
GAATGTATTGCAGCAGGAAG+TGG 0.465976 3_2:-89929483 Msa0436370:CDS
GAATGTATTGCAGCAGGAAG+TGG 0.465976 3_2:-89929876 Msa0436370:CDS
ACATGCTCAGAAAACTGAAC+TGG 0.466249 3_2:-89929963 Msa0436370:CDS
TCTCCAGGATAAAATTCATA+TGG 0.467977 3_2:-89928811 Msa0436370:CDS
GAGAGATAAAGATCGTTTGT+TGG 0.470868 3_2:-89927626 Msa0436370:CDS
CATCCTTCAATTGATCAACT+AGG 0.470968 3_2:+89930590 None:intergenic
AGAACAATTGCTAAGTGAAA+AGG 0.470987 3_2:-89927938 Msa0436370:CDS
ATGAAAAGCTTCATTGTTAG+CGG 0.473067 3_2:+89927828 None:intergenic
TATAAGTCTCTCTTGTTCCA+GGG 0.474446 3_2:+89929739 None:intergenic
GCTAGAGGCGAAGGCAAGAA+AGG 0.475163 3_2:-89927548 Msa0436370:CDS
ATCTGTCAGCGAGATGAATA+GGG 0.476754 3_2:-89927665 Msa0436370:CDS
ATCTCAGATAGACAATTTGT+TGG 0.478113 3_2:-89929609 Msa0436370:CDS
TGATAAAGAAGAGCAGCTCC+AGG 0.481731 3_2:-89931450 Msa0436370:CDS
ACTTTATAAGGCAGAGGAAG+AGG 0.486519 3_2:-89928448 Msa0436370:CDS
TGGACTTGGGAGAGGAAAAG+AGG 0.486625 3_2:-89927426 Msa0436370:CDS
GGAATTAACTCTGAGGGAAA+AGG 0.491576 3_2:-89927578 Msa0436370:CDS
GCAGATAAAGAATCTGGAAC+TGG 0.493067 3_2:-89928907 Msa0436370:CDS
CCTCTGTAACCTCCAGATTG+TGG 0.497168 3_2:+89930467 None:intergenic
ATGATTGATCACTTGGACGT+TGG 0.497533 3_2:+89928833 None:intergenic
TTCACTCTTCTGGCTGCGTA+TGG 0.497591 3_2:+89928671 None:intergenic
TTCAGAGAGAACTTGAAGAC+AGG 0.497857 3_2:-89927876 Msa0436370:CDS
AAACCTAGTTGATCAATTGA+AGG 0.498028 3_2:-89930593 Msa0436370:CDS
AGAGATAGAGAGTTAGGAAG+AGG 0.498876 3_2:+89934376 None:intergenic
AAATCAATTGGTATTGATTG+TGG 0.500035 3_2:+89931151 None:intergenic
CATGCTGTGTGTAAATCAAT+TGG 0.500843 3_2:+89931139 None:intergenic
GAGAGCTGTCTCTTTCTCCA+TGG 0.510229 3_2:+89930657 None:intergenic
GGAGCTGCTCTTCTTTATCA+GGG 0.518143 3_2:+89931453 None:intergenic
GCTGTCTCAGAACAGAATAC+AGG 0.519724 3_2:-89930392 Msa0436370:CDS
ATTCTTAATTTGCTCACCAA+AGG 0.522434 3_2:+89928758 None:intergenic
GGTTGAGAAGCTAGAGGCGA+AGG 0.522512 3_2:-89927557 Msa0436370:CDS
ACCGCTTGCTGAATTGATTG+AGG 0.523412 3_2:-89931178 Msa0436370:CDS
TCAAATTCAAAGTCTGAAAG+AGG 0.523528 3_2:-89929384 Msa0436370:CDS
TCAAATTCAAAGTCTGAAAG+AGG 0.523528 3_2:-89929777 Msa0436370:CDS
TAATTGGTTTAATGAATACA+AGG 0.524529 3_2:-89928178 Msa0436370:CDS
CCTCTTCAAAATTTCTGCTG+AGG 0.526955 3_2:+89931203 None:intergenic
ATCCGAATCTGAATCAGAGC+TGG 0.527732 3_2:+89931053 None:intergenic
GCTTAATAGATTCAGAAAAG+AGG 0.529190 3_2:-89933389 Msa0436370:five_prime_UTR
CCAAGTGATCAATCATCTCC+AGG 0.530449 3_2:-89928826 Msa0436370:CDS
ATTGTCAACTTGAGCTGTGA+AGG 0.530781 3_2:+89928407 None:intergenic
CTGAATTTGAATTGAACACT+CGG 0.531534 3_2:+89929004 None:intergenic
TCTTCAACTTAATTTGGCAC+AGG 0.532614 3_2:-89928736 Msa0436370:CDS
TTGATGAAAGAGAAAGAGGA+AGG 0.532949 3_2:-89927454 Msa0436370:CDS
GAAGACAGAAAACAATAGCT+TGG 0.533835 3_2:-89930680 Msa0436370:CDS
GGAGGTTGACAGAAAATCCC+TGG 0.534305 3_2:-89928970 Msa0436370:CDS
GGAGGTTGACAGAAAATCCC+TGG 0.534305 3_2:-89929756 Msa0436370:CDS
GGAGGTTAGCAGAAAATCCC+TGG 0.535390 3_2:-89929363 Msa0436370:CDS
GGATAAACTTTATAAGGCAG+AGG 0.539603 3_2:-89928454 Msa0436370:CDS
GACAGTTACACATGAAGAGA+AGG 0.541075 3_2:-89930899 Msa0436370:CDS
AAAAGAGACCTGGAGGAGAA+AGG 0.542883 3_2:-89928042 Msa0436370:CDS
TGAGCTGAATGTATTGCAGC+AGG 0.545544 3_2:-89929096 Msa0436370:CDS
TGAGCTGAATGTATTGCAGC+AGG 0.545544 3_2:-89929489 Msa0436370:CDS
TGAGCTGAATGTATTGCAGC+AGG 0.545544 3_2:-89929882 Msa0436370:CDS
AGCGAGATGAATAGGGTGAA+GGG 0.545897 3_2:-89927658 Msa0436370:CDS
TGAACTTAAGAAGACGGTTG+AGG 0.546303 3_2:-89927488 Msa0436370:CDS
AGAGAAAGAGGAAGGCATGT+TGG 0.551950 3_2:-89927446 Msa0436370:CDS
GAGACAGCTCTCCAACAGAT+TGG 0.552178 3_2:-89930646 Msa0436370:CDS
GCCCTTCGTGGATCTGAGTG+AGG 0.552709 3_2:+89930305 None:intergenic
GGATTCGGATTATTCTTCAA+AGG 0.553942 3_2:-89931034 Msa0436370:CDS
TGAGATCAGTAAACTGGCAC+AGG 0.554312 3_2:-89928556 Msa0436370:CDS
GAAGTCCAAAGAAAGAGAAG+AGG 0.554619 3_2:-89930095 Msa0436370:CDS
TGACAGGTGAGTTAAAGAAA+AGG 0.555026 3_2:-89931110 Msa0436370:CDS
TTTCATTGTCAACCATTCTG+AGG 0.555248 3_2:+89928298 None:intergenic
TGAAGACCTGAAAAGAGACC+TGG 0.555585 3_2:-89928052 Msa0436370:CDS
AAAGGAAGATAGCTTTAGAA+AGG 0.556622 3_2:-89927920 Msa0436370:CDS
AGGCATGTTGGACTTGGGAG+AGG 0.561691 3_2:-89927434 Msa0436370:CDS
CCTGTCAAACCAAAAGCTCC+GGG 0.563571 3_2:-89927965 Msa0436370:CDS
TCAAATTCAGAGTCTGAAAG+AGG 0.564270 3_2:-89928991 Msa0436370:CDS
ACAACACCAGAAATCTGACT+TGG 0.566725 3_2:-89929453 Msa0436370:CDS
ACAACACCAGAAATCTGACT+TGG 0.566725 3_2:-89929846 Msa0436370:CDS
TTGAATTTGAATTGAACACT+CGG 0.566781 3_2:+89929790 None:intergenic
TAAAGATGACAACCTTGAAG+AGG 0.567802 3_2:-89931232 Msa0436370:CDS
AGAAAACAATAGCTTGGCCA+TGG 0.568696 3_2:-89930674 Msa0436370:CDS
CATGGATCTTCAGAGAACAT+TGG 0.568700 3_2:-89928253 Msa0436370:CDS
CTGGGATAGATACTGTGAGC+AGG 0.568744 3_2:-89927762 Msa0436370:CDS
TCCTCAATCAATTCAGCAAG+CGG 0.569949 3_2:+89931177 None:intergenic
TGTTGTTGAACTTAAGAAGA+CGG 0.572100 3_2:-89927494 Msa0436370:CDS
TTCACTTCCTGGAATCTACA+TGG 0.574341 3_2:-89931587 Msa0436370:five_prime_UTR
TCCAACAGATTGGTGAGGAA+AGG 0.575028 3_2:-89930636 Msa0436370:CDS
CAGCGAGATGAATAGGGTGA+AGG 0.575295 3_2:-89927659 Msa0436370:CDS
GTGTCAACAGTGTGATATCT+GGG 0.575454 3_2:-89927780 Msa0436370:CDS
AAATCATATCGAAGACACGC+AGG 0.576181 3_2:-89927339 Msa0436370:CDS
GAGGAAGGCATGTTGGACTT+GGG 0.576737 3_2:-89927439 Msa0436370:CDS
ACGACACCAGAAATCTGACC+TGG 0.577406 3_2:-89929060 Msa0436370:CDS
AAAATAGATCATTCGGAGAG+AGG 0.578565 3_2:-89928513 Msa0436370:CDS
CATTGGGTCAAAAGATCAGA+TGG 0.581037 3_2:-89928097 Msa0436370:CDS
GGAAGAGGAATTAACTCTGA+GGG 0.583443 3_2:-89927584 Msa0436370:CDS
GTATCTTGGTCAATGCTGCA+AGG 0.590088 3_2:+89930857 None:intergenic
TTAGCAATTGTTCTGTAACC+CGG 0.590403 3_2:+89927947 None:intergenic
TGAGAATGTCAGGAATCTTG+AGG 0.591834 3_2:-89927998 Msa0436370:CDS
AATGCTTTCGACTCGAGTTG+AGG 0.594442 3_2:+89929124 None:intergenic
GATGACAACCTTGAAGAGGA+TGG 0.594910 3_2:-89931228 Msa0436370:CDS
AGATAAAGATCGTTTGTTGG+AGG 0.595739 3_2:-89927623 Msa0436370:CDS
ACACAGCATGATCATCTGAC+AGG 0.595806 3_2:-89931126 Msa0436370:CDS
CCACAAACAGAGCTGCCTGA+TGG 0.597178 3_2:+89927399 None:intergenic
CCAGTTTACTGATCTCATCC+CGG 0.597565 3_2:+89928562 None:intergenic
CAAGATACAAGAAGCAGACA+AGG 0.599113 3_2:-89930842 Msa0436370:CDS
AATGCTTTCAACTCGAGTTG+AGG 0.603109 3_2:+89929910 None:intergenic
GAGTTAAAGAAAAGGATCAA+AGG 0.606217 3_2:-89931102 Msa0436370:CDS
TGAGTCCTCAAATCTTATCA+GGG 0.607053 3_2:-89930275 Msa0436370:CDS
GAAGAAACTCAAAGATAATG+GGG 0.608727 3_2:-89930056 Msa0436370:CDS
AAAGCAAATAAGTGCTAACC+GGG 0.615043 3_2:-89928580 Msa0436370:CDS
AATTCAAAGTCTGAAAGAGG+AGG 0.615339 3_2:-89929381 Msa0436370:CDS
GCTCTAAAGTGTTCAACTCG+CGG 0.617860 3_2:+89928622 None:intergenic
CCCTTCGTGGATCTGAGTGA+GGG 0.618747 3_2:+89930306 None:intergenic
ACAAATCACAAATCTGGGGA+TGG 0.618881 3_2:-89930242 Msa0436370:CDS
AACAATAAGCCACAATCTGG+AGG 0.619268 3_2:-89930476 Msa0436370:CDS
AATTCAAAGTCTGAAAGAGG+AGG 0.620184 3_2:-89929774 Msa0436370:CDS
ATTAAAGCAAGAACTTGAAG+TGG 0.625206 3_2:-89930956 Msa0436370:CDS
GGAAGATAGCTTTAGAAAGG+CGG 0.626186 3_2:-89927917 Msa0436370:CDS
AATCATATCGAAGACACGCA+GGG 0.626640 3_2:-89927338 Msa0436370:CDS
AATTCAGAGTCTGAAAGAGG+AGG 0.627004 3_2:-89928988 Msa0436370:CDS
CGAGTGTAGTGACTATCTCA+AGG 0.629222 3_2:-89927362 Msa0436370:CDS
CATGGGAGATGTTTGAGATG+TGG 0.632689 3_2:+89927707 None:intergenic
GCTAAGAAGTTGGATATCAG+TGG 0.632704 3_2:-89931537 Msa0436370:five_prime_UTR
TGACTTGGAAGTTCAGCTTG+TGG 0.632873 3_2:-89929438 Msa0436370:CDS
TGACTTGGAAGTTCAGCTTG+TGG 0.632873 3_2:-89929831 Msa0436370:CDS
GCGAGATGAATAGGGTGAAG+GGG 0.634109 3_2:-89927657 Msa0436370:CDS
AATTTGAAGATGTAAAATGC+TGG 0.638723 3_2:-89934535 Msa0436370:five_prime_UTR
CCACAATCTGGAGGTTACAG+AGG 0.642292 3_2:-89930467 Msa0436370:CDS
TGATAAGTCAGTGATTGCAA+AGG 0.648880 3_2:-89930569 Msa0436370:CDS
GATAAAGAAGAGCAGCTCCA+GGG 0.649142 3_2:-89931449 Msa0436370:CDS
AGAGGCGAAGGCAAGAAAGG+AGG 0.649964 3_2:-89927545 Msa0436370:CDS
CCCTCACTCAGATCCACGAA+GGG 0.650909 3_2:-89930306 Msa0436370:CDS
GAATTTGAAAACTGATGCTG+AGG 0.656206 3_2:-89930812 Msa0436370:CDS
ACACACAGAAGTCCTCAGAA+TGG 0.656732 3_2:-89928310 Msa0436370:CDS
TGACCTGGAAGTTCAGCTTG+TGG 0.658835 3_2:-89929045 Msa0436370:CDS
AGGAAGAGGAATTAACTCTG+AGG 0.661623 3_2:-89927585 Msa0436370:CDS
GGAAAAGGTTGAGAAGCTAG+AGG 0.669571 3_2:-89927563 Msa0436370:CDS
GATTATTCTTCAAAGGACAG+AGG 0.677313 3_2:-89931027 Msa0436370:CDS
ATGGCAGAAGAGTTTCGTGA+AGG 0.678129 3_2:-89928120 Msa0436370:CDS
AGCTCTCCAACAGATTGGTG+AGG 0.679320 3_2:-89930641 Msa0436370:CDS
ACCCTCACTCAGATCCACGA+AGG 0.680192 3_2:-89930307 Msa0436370:CDS
TGAGATAGTCACTACACTCG+CGG 0.682863 3_2:+89927365 None:intergenic
AAGACAGAGAAAATTTAACC+AGG 0.687147 3_2:-89928929 Msa0436370:CDS
CGTTTGTTGGAGGAACTGCA+GGG 0.687309 3_2:-89927613 Msa0436370:CDS
TCAAACTTGAAGTTGCTGAG+AGG 0.688408 3_2:-89928155 Msa0436370:CDS
ATCATATCGAAGACACGCAG+GGG 0.689585 3_2:-89927337 Msa0436370:CDS
AGACACAAATCACAAATCTG+GGG 0.699067 3_2:-89930246 Msa0436370:CDS
AGACCTGAAAAGAGACCTGG+AGG 0.702321 3_2:-89928049 Msa0436370:CDS
GAAACATGATGAGAAAGACA+GGG 0.703452 3_2:-89930338 Msa0436370:CDS
CTTGGGAGAGGAAAAGAGGG+AGG 0.705635 3_2:-89927422 Msa0436370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCGTAAAATAATAATAA+TGG + chr3_2:89927411-89927430 None:intergenic 10.0%
!! ATTAAAAATAATCTATAAGT+TGG - chr3_2:89928163-89928182 Msa0436370:CDS 10.0%
!!! TATAACAATTATCAATATTT+TGG + chr3_2:89928566-89928585 None:intergenic 10.0%
!! AAATAAAAACATTGAAATAT+GGG + chr3_2:89929161-89929180 None:intergenic 10.0%
!! AAAATAAAAACATTGAAATA+TGG + chr3_2:89929162-89929181 None:intergenic 10.0%
!! ATAATAATTTAATGAAGATA+TGG + chr3_2:89929640-89929659 None:intergenic 10.0%
!!! AATATAAACAAATTGATAAT+TGG - chr3_2:89933688-89933707 Msa0436370:intron 10.0%
!! TGTAAACTTAATTAAACTAT+AGG - chr3_2:89927447-89927466 Msa0436370:CDS 15.0%
!! GAAATGAAAAATTTGAAAAA+CGG + chr3_2:89927588-89927607 None:intergenic 15.0%
!! ACAATAAATAATTCAGATTA+AGG + chr3_2:89927878-89927897 None:intergenic 15.0%
!! TTTATTAATCTTGTAAAAGA+TGG - chr3_2:89927902-89927921 Msa0436370:CDS 15.0%
!! TAAGAAATAAAAATCTAACA+AGG - chr3_2:89927965-89927984 Msa0436370:CDS 15.0%
!! ATCAACTATTATTATTACTT+TGG + chr3_2:89928003-89928022 None:intergenic 15.0%
!!! TTATCAATATTTTGGTAAAT+TGG + chr3_2:89928558-89928577 None:intergenic 15.0%
!!! TTTTTTTTCCATTTTTTTCT+TGG - chr3_2:89928650-89928669 Msa0436370:CDS 15.0%
!! AAAGATTGTATAATTATTTG+GGG + chr3_2:89929138-89929157 None:intergenic 15.0%
!! GAAAGATTGTATAATTATTT+GGG + chr3_2:89929139-89929158 None:intergenic 15.0%
!! TTAACATAAGATGATATAAA+TGG + chr3_2:89930055-89930074 None:intergenic 15.0%
!!! GTAATTGTATATTTTTTGAA+TGG + chr3_2:89930106-89930125 None:intergenic 15.0%
!!! AATTATTTTTCTTTTCCTTT+AGG - chr3_2:89930179-89930198 Msa0436370:CDS 15.0%
!!! AATAATAATGGAATGAAAAG+TGG + chr3_2:89927399-89927418 None:intergenic 20.0%
!!! AATAATAGTTGATAAGTTAG+CGG - chr3_2:89928010-89928029 Msa0436370:CDS 20.0%
!!! ATTAAATTAGCTTAGTCAAT+TGG - chr3_2:89928285-89928304 Msa0436370:CDS 20.0%
!!! AATTTTTTCCTTTTCTTTGT+AGG - chr3_2:89928448-89928467 Msa0436370:CDS 20.0%
!! AAAACTTGAAGCAATATTTA+AGG - chr3_2:89928524-89928543 Msa0436370:CDS 20.0%
!!! CGTTTCTTTCTTTTATTTTT+TGG - chr3_2:89928793-89928812 Msa0436370:CDS 20.0%
!! CGTTAATTAATTAAGAGTTT+GGG - chr3_2:89928941-89928960 Msa0436370:CDS 20.0%
!! GGAAAGATTGTATAATTATT+TGG + chr3_2:89929140-89929159 None:intergenic 20.0%
!! TCTTTAGTTGTCAATTATAT+AGG + chr3_2:89929408-89929427 None:intergenic 20.0%
!! ATATAATTGACAACTAAAGA+TGG - chr3_2:89929408-89929427 Msa0436370:CDS 20.0%
!! TAATTTAATGAAGATATGGA+GGG + chr3_2:89929636-89929655 None:intergenic 20.0%
!! ATAATTTAATGAAGATATGG+AGG + chr3_2:89929637-89929656 None:intergenic 20.0%
!!! ATATAAATGGTTGAGATTTT+AGG + chr3_2:89930042-89930061 None:intergenic 20.0%
!!! TTGTATATTTTTTGAATGGA+TGG + chr3_2:89930102-89930121 None:intergenic 20.0%
!! AAAATGTAAAATAACAGTGT+AGG + chr3_2:89930142-89930161 None:intergenic 20.0%
!! AAATTGAAGACAAAGTTAAA+AGG - chr3_2:89930613-89930632 Msa0436370:CDS 20.0%
!!! GATACAAATATCAAAACTTT+TGG - chr3_2:89931100-89931119 Msa0436370:CDS 20.0%
!! TAAGAATCTTCAACTTAATT+TGG - chr3_2:89933140-89933159 Msa0436370:intron 20.0%
!!! TAATTGGTTTAATGAATACA+AGG - chr3_2:89933704-89933723 Msa0436370:intron 20.0%
! AATTTCATGAATGGAATCTT+TGG + chr3_2:89927331-89927350 None:intergenic 25.0%
! ACATCTTCAAATTTCATGAA+TGG + chr3_2:89927340-89927359 None:intergenic 25.0%
! AATTTGAAGATGTAAAATGC+TGG - chr3_2:89927347-89927366 Msa0436370:CDS 25.0%
! GATGATAATAAAAACACCAA+AGG + chr3_2:89928364-89928383 None:intergenic 25.0%
! TAACATAATCCCCAATATAT+AGG + chr3_2:89928600-89928619 None:intergenic 25.0%
! ACTACTATCCAAGAAAAAAA+TGG + chr3_2:89928661-89928680 None:intergenic 25.0%
! AATCCGTATAGCTTAAAATT+TGG - chr3_2:89928908-89928927 Msa0436370:CDS 25.0%
! GCGTTAATTAATTAAGAGTT+TGG - chr3_2:89928940-89928959 Msa0436370:CDS 25.0%
! TGGTTTAGTAACAGTAATTA+TGG - chr3_2:89928973-89928992 Msa0436370:CDS 25.0%
!! TGTTTCATATGATGGAAATT+GGG + chr3_2:89929091-89929110 None:intergenic 25.0%
!! ATGTTTCATATGATGGAAAT+TGG + chr3_2:89929092-89929111 None:intergenic 25.0%
! ACTACTAATGTTTCATATGA+TGG + chr3_2:89929099-89929118 None:intergenic 25.0%
! ATGGAATACATTAAGTATCA+AGG - chr3_2:89929427-89929446 Msa0436370:CDS 25.0%
!!! ATTTGTTTTGGATAGTTAGT+CGG + chr3_2:89929769-89929788 None:intergenic 25.0%
!!! TATGGTTGTTTGATTTGTTT+TGG + chr3_2:89929781-89929800 None:intergenic 25.0%
!! TTTCGTTAGTAGAGATATTT+TGG + chr3_2:89929823-89929842 None:intergenic 25.0%
! ATATCTCTACTAACGAAATA+TGG - chr3_2:89929825-89929844 Msa0436370:CDS 25.0%
!!! AGTTAAGGTTTAATTTGCTT+TGG + chr3_2:89930006-89930025 None:intergenic 25.0%
!!! GAATCTGTTTTTTTACCTAA+AGG + chr3_2:89930197-89930216 None:intergenic 25.0%
! TATTTGATATTTGAGCAATG+AGG + chr3_2:89930253-89930272 None:intergenic 25.0%
! ATCAATTGTTGATCAACATA+AGG + chr3_2:89930567-89930586 None:intergenic 25.0%
!!! AAATCAATTGGTATTGATTG+TGG + chr3_2:89930734-89930753 None:intergenic 25.0%
! GAGTTTCAAAAGATAATTGA+TGG - chr3_2:89930903-89930922 Msa0436370:CDS 25.0%
! ATCTGAATTAAGTCAGTTAA+AGG - chr3_2:89931520-89931539 Msa0436370:exon 25.0%
!!! TCATTTCAAGTTCTGAAATT+TGG + chr3_2:89931769-89931788 None:intergenic 25.0%
! ATGAAGAAACTCAAAGATAA+TGG - chr3_2:89931824-89931843 Msa0436370:intron 25.0%
! TGAAGAAACTCAAAGATAAT+GGG - chr3_2:89931825-89931844 Msa0436370:intron 25.0%
!! AGATGTCAAATCTGATATTT+TGG + chr3_2:89931864-89931883 None:intergenic 25.0%
! TTGAATTTGAATTGAACACT+CGG + chr3_2:89932095-89932114 None:intergenic 25.0%
!! TTTTACAAAAGAAAGAGAAG+AGG - chr3_2:89932180-89932199 Msa0436370:intron 25.0%
! ATGATTCATTCTCATTATCT+TGG + chr3_2:89932231-89932250 None:intergenic 25.0%
!! AGATGTCAAATCTGATATTT+TGG + chr3_2:89931864-89931883 None:intergenic 25.0%
!! TTTTACAAAAGAAAGAGAAG+CGG - chr3_2:89932180-89932199 Msa0436370:intron 25.0%
!! AGATGTCAAATCTGATATTT+TGG + chr3_2:89931864-89931883 None:intergenic 25.0%
! ATCTCAGATAGAAAATTTGT+TGG - chr3_2:89932666-89932685 Msa0436370:intron 25.0%
AAACTTAGAGATAGAGAGTT+AGG + chr3_2:89927515-89927534 None:intergenic 30.0%
GTTGAAAAAGAAGATGATGA+AGG + chr3_2:89927542-89927561 None:intergenic 30.0%
AAAACCATATCCAATTTCTG+CGG + chr3_2:89927824-89927843 None:intergenic 30.0%
TTCTGCTCTTTACTTTACTT+TGG - chr3_2:89927938-89927957 Msa0436370:CDS 30.0%
!! ATAAGTTGGTGAAAAAGTGA+AGG - chr3_2:89928177-89928196 Msa0436370:CDS 30.0%
! CTAGTATTTCTATTTGCCTT+TGG - chr3_2:89928345-89928364 Msa0436370:CDS 30.0%
GCTTAATAGATTCAGAAAAG+AGG - chr3_2:89928493-89928512 Msa0436370:CDS 30.0%
GATTCAGAAAAGAGGATATA+AGG - chr3_2:89928501-89928520 Msa0436370:CDS 30.0%
!! AGAGTATTGAGCCTATATAT+TGG - chr3_2:89928586-89928605 Msa0436370:CDS 30.0%
!! GAGTATTGAGCCTATATATT+GGG - chr3_2:89928587-89928606 Msa0436370:CDS 30.0%
! AGTATTGAGCCTATATATTG+GGG - chr3_2:89928588-89928607 Msa0436370:CDS 30.0%
!!! CAAGATGCACTTATTTTTGA+AGG + chr3_2:89928856-89928875 None:intergenic 30.0%
! GGTCCAAATTTTAAGCTATA+CGG + chr3_2:89928914-89928933 None:intergenic 30.0%
TTAATTAATTAACGCACCAC+TGG + chr3_2:89928935-89928954 None:intergenic 30.0%
ACTGTTACTAAACCAAAATG+TGG + chr3_2:89928968-89928987 None:intergenic 30.0%
TGTCAAAAAGATACTAGATG+CGG + chr3_2:89929002-89929021 None:intergenic 30.0%
CGGATTATATGTGATTAACT+GGG + chr3_2:89929060-89929079 None:intergenic 30.0%
! ACGGATTATATGTGATTAAC+TGG + chr3_2:89929061-89929080 None:intergenic 30.0%
AGATAGCAAACAATACAAAG+AGG - chr3_2:89929261-89929280 Msa0436370:CDS 30.0%
!! TCATGATTGTTTGGTTTGAT+TGG + chr3_2:89929304-89929323 None:intergenic 30.0%
!! TCAATTATATAGGCTCTGAA+GGG + chr3_2:89929398-89929417 None:intergenic 30.0%
! AATTGGAGTTTTCATTATGC+AGG + chr3_2:89929725-89929744 None:intergenic 30.0%
AATGTTTGTTCAGTCTGAAT+TGG + chr3_2:89929742-89929761 None:intergenic 30.0%
AATTAAGAACCTGAGAGTTA+TGG + chr3_2:89929799-89929818 None:intergenic 30.0%
CAGATTAGATGATGTTATGT+TGG + chr3_2:89929949-89929968 None:intergenic 30.0%
AAAGAGCTATCTTAAGATCA+TGG + chr3_2:89929975-89929994 None:intergenic 30.0%
! CTTAAGATAGCTCTTTTGAT+AGG - chr3_2:89929979-89929998 Msa0436370:CDS 30.0%
ACTTGATATTGCTAAGAAGT+TGG - chr3_2:89930335-89930354 Msa0436370:CDS 30.0%
GAGTTAAAGAAAAGGATCAA+AGG - chr3_2:89930780-89930799 Msa0436370:CDS 30.0%
ATTAAAGCAAGAACTTGAAG+TGG - chr3_2:89930926-89930945 Msa0436370:CDS 30.0%
TACTGAACTAAATAAGCAAC+TGG - chr3_2:89931130-89931149 Msa0436370:CDS 30.0%
AAACCTAGTTGATCAATTGA+AGG - chr3_2:89931289-89931308 Msa0436370:intron 30.0%
GCAAAACGAGAAAAAAGATA+TGG - chr3_2:89931676-89931695 Msa0436370:intron 30.0%
AAACGAGAAAAAAGATATGG+AGG - chr3_2:89931679-89931698 Msa0436370:intron 30.0%
GAAGAAACTCAAAGATAATG+GGG - chr3_2:89931826-89931845 Msa0436370:intron 30.0%
TCAAATTCAAAGTCTGAAAG+AGG - chr3_2:89932105-89932124 Msa0436370:intron 30.0%
ATCTCAGATAGACAATTTGT+TGG - chr3_2:89932273-89932292 Msa0436370:intron 30.0%
! TTGAACACTCTGAATTTTCT+TGG + chr3_2:89932477-89932496 None:intergenic 30.0%
TCAAATTCAAAGTCTGAAAG+AGG - chr3_2:89932105-89932124 Msa0436370:intron 30.0%
CTGAATTTGAATTGAACACT+CGG + chr3_2:89932881-89932900 None:intergenic 30.0%
AAGACAGAGAAAATTTAACC+AGG - chr3_2:89932953-89932972 Msa0436370:intron 30.0%
!!! TTTGCTATTTTTGCTCTTGA+TGG + chr3_2:89933010-89933029 None:intergenic 30.0%
TCTCCAGGATAAAATTCATA+TGG - chr3_2:89933071-89933090 Msa0436370:intron 30.0%
!! ATTCTTAATTTGCTCACCAA+AGG + chr3_2:89933127-89933146 None:intergenic 30.0%
AGCAGACAAAATAGATCATT+CGG - chr3_2:89933362-89933381 Msa0436370:five_prime_UTR 30.0%
GCTTCAGGATAAACTTTATA+AGG - chr3_2:89933422-89933441 Msa0436370:intron 30.0%
!! TCAAGTTGACAATCTGAAAA+AGG - chr3_2:89933485-89933504 Msa0436370:intron 30.0%
!!! TTCTTCTTTTGTTTTCTGCA+AGG + chr3_2:89933520-89933539 None:intergenic 30.0%
GCAGAAAACAAAAGAAGAAT+TGG - chr3_2:89933521-89933540 Msa0436370:intron 30.0%
TGAATTAGCCAACAAAAACA+TGG - chr3_2:89933611-89933630 Msa0436370:intron 30.0%
AGAACAATTGCTAAGTGAAA+AGG - chr3_2:89933944-89933963 Msa0436370:intron 30.0%
!! AAAGGAAGATAGCTTTAGAA+AGG - chr3_2:89933962-89933981 Msa0436370:intron 30.0%
ATGAAAAGCTTCATTGTTAG+CGG + chr3_2:89934057-89934076 None:intergenic 30.0%
TGTTGTTGAACTTAAGAAGA+CGG - chr3_2:89934388-89934407 Msa0436370:five_prime_UTR 30.0%
!!! TTCTTTTTCAACTCTCACAG+AGG - chr3_2:89927550-89927569 Msa0436370:CDS 35.0%
TGAAGTGAAAACGAAGAAGA+AGG + chr3_2:89927610-89927629 None:intergenic 35.0%
!!! GCTCTTTAGTTTTCAGCTTT+TGG - chr3_2:89927682-89927701 Msa0436370:CDS 35.0%
TTTGTATACTCCGCAGAAAT+TGG - chr3_2:89927811-89927830 Msa0436370:CDS 35.0%
CAGATTAAGGATCAAGATAC+AGG + chr3_2:89927865-89927884 None:intergenic 35.0%
AGCGGAAAAACTTATACTAG+TGG - chr3_2:89928028-89928047 Msa0436370:CDS 35.0%
ATATACTGATACTGAGTAGC+AGG + chr3_2:89928324-89928343 None:intergenic 35.0%
ATTCTTGAAAGTTGTTGTCG+TGG - chr3_2:89928731-89928750 Msa0436370:CDS 35.0%
CACGATTCTATTACTGAGAA+CGG + chr3_2:89928885-89928904 None:intergenic 35.0%
TAGCTTAAAATTTGGACCAG+TGG - chr3_2:89928916-89928935 Msa0436370:CDS 35.0%
ATGGAAATTGGGTTCAGTTA+CGG + chr3_2:89929080-89929099 None:intergenic 35.0%
! ATTTGGGGTTTATTCGAACA+AGG + chr3_2:89929123-89929142 None:intergenic 35.0%
TTAAAAAACTCCACATGCAC+AGG - chr3_2:89929223-89929242 Msa0436370:CDS 35.0%
AGGTTGTGTTCATGATTGTT+TGG + chr3_2:89929313-89929332 None:intergenic 35.0%
!! CAATTATATAGGCTCTGAAG+GGG + chr3_2:89929397-89929416 None:intergenic 35.0%
! GTCAATTATATAGGCTCTGA+AGG + chr3_2:89929399-89929418 None:intergenic 35.0%
ATTAGAATGCTATGAGGCTT+GGG + chr3_2:89929478-89929497 None:intergenic 35.0%
CAACAGATTAGAATGCTATG+AGG + chr3_2:89929484-89929503 None:intergenic 35.0%
!! GTTATACTTGGCTTGCAAAA+TGG + chr3_2:89929522-89929541 None:intergenic 35.0%
! TGCAGTATAGGTGTTATACT+TGG + chr3_2:89929534-89929553 None:intergenic 35.0%
TTTCCTAAAGTGAAGTACAC+TGG + chr3_2:89929589-89929608 None:intergenic 35.0%
! TTCACTTTAGGAAACCAAAC+AGG - chr3_2:89929595-89929614 Msa0436370:CDS 35.0%
!! ATATGGAGGGATTGTTGTTT+GGG + chr3_2:89929623-89929642 None:intergenic 35.0%
GTGGAGAAAACATGTATCAT+CGG + chr3_2:89929665-89929684 None:intergenic 35.0%
!! TTCATTATGCAGGTTGGTTT+GGG + chr3_2:89929715-89929734 None:intergenic 35.0%
!! TTTCATTATGCAGGTTGGTT+TGG + chr3_2:89929716-89929735 None:intergenic 35.0%
ATCAAACAACCATAACTCTC+AGG - chr3_2:89929787-89929806 Msa0436370:CDS 35.0%
AGCTATATGGATAGAAGTGA+GGG + chr3_2:89929867-89929886 None:intergenic 35.0%
ATATCATTTCAGCTGTCATG+GGG + chr3_2:89930499-89930518 None:intergenic 35.0%
GATATCATTTCAGCTGTCAT+GGG + chr3_2:89930500-89930519 None:intergenic 35.0%
TGATATCATTTCAGCTGTCA+TGG + chr3_2:89930501-89930520 None:intergenic 35.0%
TGACAGCTGAAATGATATCA+TGG - chr3_2:89930501-89930520 Msa0436370:CDS 35.0%
TGATATCATGGAAGATCACT+AGG - chr3_2:89930513-89930532 Msa0436370:CDS 35.0%
TAAAGATGACAACCTTGAAG+AGG - chr3_2:89930650-89930669 Msa0436370:CDS 35.0%
!! CTCAGCAGAAATTTTGAAGA+GGG - chr3_2:89930680-89930699 Msa0436370:CDS 35.0%
CATGCTGTGTGTAAATCAAT+TGG + chr3_2:89930746-89930765 None:intergenic 35.0%
TGACAGGTGAGTTAAAGAAA+AGG - chr3_2:89930772-89930791 Msa0436370:CDS 35.0%
GGATTCGGATTATTCTTCAA+AGG - chr3_2:89930848-89930867 Msa0436370:CDS 35.0%
GATTATTCTTCAAAGGACAG+AGG - chr3_2:89930855-89930874 Msa0436370:CDS 35.0%
GAATTTGAAAACTGATGCTG+AGG - chr3_2:89931070-89931089 Msa0436370:CDS 35.0%
AGCTGAACTGAGTCAAAAAT+TGG - chr3_2:89931172-89931191 Msa0436370:CDS 35.0%
TGAACTGAGTCAAAAATTGG+AGG - chr3_2:89931175-89931194 Msa0436370:CDS 35.0%
GAAGACAGAAAACAATAGCT+TGG - chr3_2:89931202-89931221 Msa0436370:CDS 35.0%
ATTGATCAACTAGGTTTCTC+AGG + chr3_2:89931286-89931305 None:intergenic 35.0%
CATCCTTCAATTGATCAACT+AGG + chr3_2:89931295-89931314 None:intergenic 35.0%
TGATAAGTCAGTGATTGCAA+AGG - chr3_2:89931313-89931332 Msa0436370:intron 35.0%
AACAACAATAAGCCACAATC+TGG - chr3_2:89931403-89931422 Msa0436370:intron 35.0%
AGAAACATGATGAGAAAGAC+AGG - chr3_2:89931543-89931562 Msa0436370:five_prime_UTR 35.0%
GAAACATGATGAGAAAGACA+GGG - chr3_2:89931544-89931563 Msa0436370:five_prime_UTR 35.0%
ATGAGTCCTCAAATCTTATC+AGG - chr3_2:89931606-89931625 Msa0436370:intron 35.0%
TGAGTCCTCAAATCTTATCA+GGG - chr3_2:89931607-89931626 Msa0436370:intron 35.0%
TAGTTCCCTGATAAGATTTG+AGG + chr3_2:89931615-89931634 None:intergenic 35.0%
AGAGACACAAATCACAAATC+TGG - chr3_2:89931634-89931653 Msa0436370:intron 35.0%
GAGACACAAATCACAAATCT+GGG - chr3_2:89931635-89931654 Msa0436370:intron 35.0%
AGACACAAATCACAAATCTG+GGG - chr3_2:89931636-89931655 Msa0436370:intron 35.0%
!!! TTCCAGTTCTCTTTTTTCAG+TGG + chr3_2:89931723-89931742 None:intergenic 35.0%
TAGTTCCTCTTCTCTTTCTT+TGG + chr3_2:89931795-89931814 None:intergenic 35.0%
! TTGAACACTCGGAATTTTCT+TGG + chr3_2:89932084-89932103 None:intergenic 35.0%
AATTCAAAGTCTGAAAGAGG+AGG - chr3_2:89932108-89932127 Msa0436370:intron 35.0%
TATAAGTCTCTCTTGTTCCA+GGG + chr3_2:89932146-89932165 None:intergenic 35.0%
! AATGCTTTCGACTTGATTTG+AGG + chr3_2:89932368-89932387 None:intergenic 35.0%
AATTCAAAGTCTGAAAGAGG+AGG - chr3_2:89932108-89932127 Msa0436370:intron 35.0%
ACATGCTCAGAAAAATGAAC+TGG - chr3_2:89932312-89932331 Msa0436370:intron 35.0%
! TTGAACACTCGGAATTTTCT+TGG + chr3_2:89932084-89932103 None:intergenic 35.0%
TCAAATTCAGAGTCTGAAAG+AGG - chr3_2:89932891-89932910 Msa0436370:intron 35.0%
GCAAAGATGAAGAGCAAATA+AGG - chr3_2:89933025-89933044 Msa0436370:intron 35.0%
! CTGCCATATGAATTTTATCC+TGG + chr3_2:89933077-89933096 None:intergenic 35.0%
ATTCATATGGCAGAGATAGA+AGG - chr3_2:89933084-89933103 Msa0436370:intron 35.0%
! TCTTCAACTTAATTTGGCAC+AGG - chr3_2:89933146-89933165 Msa0436370:intron 35.0%
CAAAGCAAATAAGTGCTAAC+CGG - chr3_2:89933301-89933320 Msa0436370:intron 35.0%
AAAGCAAATAAGTGCTAACC+GGG - chr3_2:89933302-89933321 Msa0436370:intron 35.0%
TAAACTGGCACAGGAAAATT+TGG - chr3_2:89933335-89933354 Msa0436370:intron 35.0%
AAAATAGATCATTCGGAGAG+AGG - chr3_2:89933369-89933388 Msa0436370:five_prime_UTR 35.0%
GGATAAACTTTATAAGGCAG+AGG - chr3_2:89933428-89933447 Msa0436370:intron 35.0%
TTTCATTGTCAACCATTCTG+AGG + chr3_2:89933587-89933606 None:intergenic 35.0%
!! CTGAAGATCCATGTTTTTGT+TGG + chr3_2:89933622-89933641 None:intergenic 35.0%
TGAGAGGAAAATGGAAGAAA+TGG - chr3_2:89933743-89933762 Msa0436370:intron 35.0%
AGATCAGATGGTAACTGATT+TGG - chr3_2:89933797-89933816 Msa0436370:intron 35.0%
TTAGCAATTGTTCTGTAACC+CGG + chr3_2:89933938-89933957 None:intergenic 35.0%
! CTCATGATTTTTGCTTTCGT+CGG + chr3_2:89934153-89934172 None:intergenic 35.0%
GAGAGATAAAGATCGTTTGT+TGG - chr3_2:89934256-89934275 Msa0436370:intron 35.0%
! AGATAAAGATCGTTTGTTGG+AGG - chr3_2:89934259-89934278 Msa0436370:intron 35.0%
!! GAAGTTGATGAAAGAGAAAG+AGG - chr3_2:89934424-89934443 Msa0436370:five_prime_UTR 35.0%
TTGATGAAAGAGAAAGAGGA+AGG - chr3_2:89934428-89934447 Msa0436370:five_prime_UTR 35.0%
AGAGATAGAGAGTTAGGAAG+AGG + chr3_2:89927509-89927528 None:intergenic 40.0%
TACTCCGCAGAAATTGGATA+TGG - chr3_2:89927817-89927836 Msa0436370:CDS 40.0%
TGCAGCAACCTACAAAGAAA+AGG + chr3_2:89928459-89928478 None:intergenic 40.0%
!! AAGAGTTTGGGACCACATTT+TGG - chr3_2:89928953-89928972 Msa0436370:CDS 40.0%
GATTAGAATGCTATGAGGCT+TGG + chr3_2:89929479-89929498 None:intergenic 40.0%
CTATTGGATGGTTGCAGTAT+AGG + chr3_2:89929546-89929565 None:intergenic 40.0%
ATACTGCAACCATCCAATAG+AGG - chr3_2:89929546-89929565 Msa0436370:CDS 40.0%
CAACCAGTGTACTTCACTTT+AGG - chr3_2:89929583-89929602 Msa0436370:CDS 40.0%
! GATATGGAGGGATTGTTGTT+TGG + chr3_2:89929624-89929643 None:intergenic 40.0%
! GTAGAGGTGTAATTCTTGTG+TGG + chr3_2:89929684-89929703 None:intergenic 40.0%
! GGAGTTTTCATTATGCAGGT+TGG + chr3_2:89929721-89929740 None:intergenic 40.0%
CAGCTATATGGATAGAAGTG+AGG + chr3_2:89929868-89929887 None:intergenic 40.0%
!! AGGTGTTGTTTGCAGCTATA+TGG + chr3_2:89929880-89929899 None:intergenic 40.0%
AACCTTAACTGAGATGATGC+AGG - chr3_2:89930016-89930035 Msa0436370:CDS 40.0%
! ATTTTCAGCTCTTCACTTCC+TGG - chr3_2:89930284-89930303 Msa0436370:CDS 40.0%
TTCACTTCCTGGAATCTACA+TGG - chr3_2:89930295-89930314 Msa0436370:CDS 40.0%
TTGTTCACCATGTAGATTCC+AGG + chr3_2:89930305-89930324 None:intergenic 40.0%
GCTAAGAAGTTGGATATCAG+TGG - chr3_2:89930345-89930364 Msa0436370:CDS 40.0%
TTGGATATCAGTGGAGAAGA+TGG - chr3_2:89930354-89930373 Msa0436370:CDS 40.0%
CCTCTTCAAAATTTCTGCTG+AGG + chr3_2:89930682-89930701 None:intergenic 40.0%
!! CCTCAGCAGAAATTTTGAAG+AGG - chr3_2:89930679-89930698 Msa0436370:CDS 40.0%
TCCTCAATCAATTCAGCAAG+CGG + chr3_2:89930708-89930727 None:intergenic 40.0%
ATCAAAGGCAAGCGAGAAAA+AGG - chr3_2:89930795-89930814 Msa0436370:CDS 40.0%
! ATCCAGCTCTGATTCAGATT+CGG - chr3_2:89930827-89930846 Msa0436370:CDS 40.0%
CTCTGATTCAGATTCGGATT+CGG - chr3_2:89930833-89930852 Msa0436370:CDS 40.0%
GACAGTTACACATGAAGAGA+AGG - chr3_2:89930983-89931002 Msa0436370:CDS 40.0%
CTTGTCTGCTTCTTGTATCT+TGG + chr3_2:89931042-89931061 None:intergenic 40.0%
CAAGATACAAGAAGCAGACA+AGG - chr3_2:89931040-89931059 Msa0436370:CDS 40.0%
AATAAGCAACTGGACATTGC+TGG - chr3_2:89931140-89931159 Msa0436370:CDS 40.0%
AGAAAACAATAGCTTGGCCA+TGG - chr3_2:89931208-89931227 Msa0436370:CDS 40.0%
AACAATAAGCCACAATCTGG+AGG - chr3_2:89931406-89931425 Msa0436370:intron 40.0%
ACAAATCACAAATCTGGGGA+TGG - chr3_2:89931640-89931659 Msa0436370:intron 40.0%
CACCACTGAAAAAAGAGAAC+TGG - chr3_2:89931718-89931737 Msa0436370:intron 40.0%
GAAGTCCAAAGAAAGAGAAG+AGG - chr3_2:89931787-89931806 Msa0436370:intron 40.0%
ACATGCTCAGAAAACTGAAC+TGG - chr3_2:89931919-89931938 Msa0436370:intron 40.0%
! AATGCTTTCAACTCGAGTTG+AGG + chr3_2:89931975-89931994 None:intergenic 40.0%
ACAACACCAGAAATCTGACT+TGG - chr3_2:89932036-89932055 Msa0436370:intron 40.0%
GAACTTCCAAGTCAGATTTC+TGG + chr3_2:89932045-89932064 None:intergenic 40.0%
CTATAAGTCTCTCTTGTTCC+AGG + chr3_2:89932147-89932166 None:intergenic 40.0%
ACAACACCAGAAATCTGACT+TGG - chr3_2:89932036-89932055 Msa0436370:intron 40.0%
GAACTTCCAAGTCAGATTTC+TGG + chr3_2:89932045-89932064 None:intergenic 40.0%
CATAAGTCTCTCTTGTTCCA+GGG + chr3_2:89932539-89932558 None:intergenic 40.0%
AATTCAGAGTCTGAAAGAGG+AGG - chr3_2:89932894-89932913 Msa0436370:intron 40.0%
CATAAGTCTCTCTTGTTCCA+GGG + chr3_2:89932539-89932558 None:intergenic 40.0%
AACCAGGCAGATAAAGAATC+TGG - chr3_2:89932969-89932988 Msa0436370:intron 40.0%
TTCCAGATTCTTTATCTGCC+TGG + chr3_2:89932974-89932993 None:intergenic 40.0%
! GCAGATAAAGAATCTGGAAC+TGG - chr3_2:89932975-89932994 Msa0436370:intron 40.0%
ATGATTGATCACTTGGACGT+TGG + chr3_2:89933052-89933071 None:intergenic 40.0%
TCAACCCAAATAGTTGCCTT+TGG - chr3_2:89933108-89933127 Msa0436370:intron 40.0%
CTCACCAAAGGCAACTATTT+GGG + chr3_2:89933115-89933134 None:intergenic 40.0%
CAAAAAAATGGAGTTGGAGC+TGG - chr3_2:89933185-89933204 Msa0436370:intron 40.0%
ACTTTATAAGGCAGAGGAAG+AGG - chr3_2:89933434-89933453 Msa0436370:intron 40.0%
ATTGTCAACTTGAGCTGTGA+AGG + chr3_2:89933478-89933497 None:intergenic 40.0%
CATGGATCTTCAGAGAACAT+TGG - chr3_2:89933629-89933648 Msa0436370:intron 40.0%
TCAAACTTGAAGTTGCTGAG+AGG - chr3_2:89933727-89933746 Msa0436370:intron 40.0%
TGAAGTTGCTGAGAGGAAAA+TGG - chr3_2:89933734-89933753 Msa0436370:intron 40.0%
!! AAGAGTTTCGTGAAGGCATT+GGG - chr3_2:89933769-89933788 Msa0436370:intron 40.0%
CATTGGGTCAAAAGATCAGA+TGG - chr3_2:89933785-89933804 Msa0436370:intron 40.0%
! GCACTTTGTTTGAGAATGTC+AGG - chr3_2:89933874-89933893 Msa0436370:intron 40.0%
TGAGAATGTCAGGAATCTTG+AGG - chr3_2:89933884-89933903 Msa0436370:intron 40.0%
!! GGAAGATAGCTTTAGAAAGG+CGG - chr3_2:89933965-89933984 Msa0436370:intron 40.0%
TTCAGAGAGAACTTGAAGAC+AGG - chr3_2:89934006-89934025 Msa0436370:intron 40.0%
TGTGTCAACAGTGTGATATC+TGG - chr3_2:89934101-89934120 Msa0436370:intron 40.0%
GTGTCAACAGTGTGATATCT+GGG - chr3_2:89934102-89934121 Msa0436370:intron 40.0%
! TTTTGCAACCTGAAGCTCAT+GGG + chr3_2:89934195-89934214 None:intergenic 40.0%
AATCTGTCAGCGAGATGAAT+AGG - chr3_2:89934216-89934235 Msa0436370:five_prime_UTR 40.0%
ATCTGTCAGCGAGATGAATA+GGG - chr3_2:89934217-89934236 Msa0436370:five_prime_UTR 40.0%
AGGAAGAGGAATTAACTCTG+AGG - chr3_2:89934297-89934316 Msa0436370:intron 40.0%
GGAAGAGGAATTAACTCTGA+GGG - chr3_2:89934298-89934317 Msa0436370:intron 40.0%
! GGAATTAACTCTGAGGGAAA+AGG - chr3_2:89934304-89934323 Msa0436370:intron 40.0%
TGAACTTAAGAAGACGGTTG+AGG - chr3_2:89934394-89934413 Msa0436370:five_prime_UTR 40.0%
AAATCATATCGAAGACACGC+AGG - chr3_2:89934543-89934562 Msa0436370:five_prime_UTR 40.0%
AATCATATCGAAGACACGCA+GGG - chr3_2:89934544-89934563 Msa0436370:five_prime_UTR 40.0%
CTTGAAAGTTGTTGTCGTGG+CGG - chr3_2:89928734-89928753 Msa0436370:CDS 45.0%
CTGTAGCTGAGTTGTAGTCT+TGG - chr3_2:89928761-89928780 Msa0436370:CDS 45.0%
TAGCGCAAACACATGTTGCA+GGG + chr3_2:89929185-89929204 None:intergenic 45.0%
ATAGCGCAAACACATGTTGC+AGG + chr3_2:89929186-89929205 None:intergenic 45.0%
! AGTTTGGCAGTGTGGCTTTT+AGG + chr3_2:89929333-89929352 None:intergenic 45.0%
GGTTGATTGCCTCTATTGGA+TGG + chr3_2:89929558-89929577 None:intergenic 45.0%
! GAGAGGTTGATTGCCTCTAT+TGG + chr3_2:89929562-89929581 None:intergenic 45.0%
! TGAAGTACACTGGTTGTGAG+AGG + chr3_2:89929579-89929598 None:intergenic 45.0%
!! TTGTTGTTTGGGCTCCTGTT+TGG + chr3_2:89929612-89929631 None:intergenic 45.0%
TAATTGGGAAGGCTGTGTCA+AGG + chr3_2:89929900-89929919 None:intergenic 45.0%
CTGGCTGGAAATAATTGGGA+AGG + chr3_2:89929911-89929930 None:intergenic 45.0%
!! CGTGCTGGCTGGAAATAATT+GGG + chr3_2:89929915-89929934 None:intergenic 45.0%
!! TCGTGCTGGCTGGAAATAAT+TGG + chr3_2:89929916-89929935 None:intergenic 45.0%
GGAGCTGCTCTTCTTTATCA+GGG + chr3_2:89930432-89930451 None:intergenic 45.0%
TGGAGCTGCTCTTCTTTATC+AGG + chr3_2:89930433-89930452 None:intergenic 45.0%
TGATAAAGAAGAGCAGCTCC+AGG - chr3_2:89930432-89930451 Msa0436370:CDS 45.0%
GATAAAGAAGAGCAGCTCCA+GGG - chr3_2:89930433-89930452 Msa0436370:CDS 45.0%
GATGACAACCTTGAAGAGGA+TGG - chr3_2:89930654-89930673 Msa0436370:CDS 45.0%
! ACCGCTTGCTGAATTGATTG+AGG - chr3_2:89930704-89930723 Msa0436370:CDS 45.0%
ACACAGCATGATCATCTGAC+AGG - chr3_2:89930756-89930775 Msa0436370:CDS 45.0%
ATCCGAATCTGAATCAGAGC+TGG + chr3_2:89930832-89930851 None:intergenic 45.0%
AAGGACAGAGGCAGCAAAAA+TGG - chr3_2:89930867-89930886 Msa0436370:CDS 45.0%
AGAACTTGAAGTGGCGCATA+AGG - chr3_2:89930935-89930954 Msa0436370:CDS 45.0%
GTATCTTGGTCAATGCTGCA+AGG + chr3_2:89931028-89931047 None:intergenic 45.0%
TCCAACAGATTGGTGAGGAA+AGG - chr3_2:89931246-89931265 Msa0436370:CDS 45.0%
TCCTTTCCTCACCAATCTGT+TGG + chr3_2:89931250-89931269 None:intergenic 45.0%
GCTGTCTCAGAACAGAATAC+AGG - chr3_2:89931490-89931509 Msa0436370:CDS 45.0%
ACTCATTCTTATGCCCTTCG+TGG + chr3_2:89931592-89931611 None:intergenic 45.0%
! GAACTGGAAGAGCGCAATTT+AGG - chr3_2:89931734-89931753 Msa0436370:intron 45.0%
TGAGCTGAATGTATTGCAGC+AGG - chr3_2:89932000-89932019 Msa0436370:intron 45.0%
GAATGTATTGCAGCAGGAAG+TGG - chr3_2:89932006-89932025 Msa0436370:intron 45.0%
! TGACTTGGAAGTTCAGCTTG+TGG - chr3_2:89932051-89932070 Msa0436370:intron 45.0%
TGAGCTGAATGTATTGCAGC+AGG - chr3_2:89932000-89932019 Msa0436370:intron 45.0%
GAATGTATTGCAGCAGGAAG+TGG - chr3_2:89932006-89932025 Msa0436370:intron 45.0%
! TGACTTGGAAGTTCAGCTTG+TGG - chr3_2:89932051-89932070 Msa0436370:intron 45.0%
CCATAAGTCTCTCTTGTTCC+AGG + chr3_2:89932540-89932559 None:intergenic 45.0%
CCTGGAACAAGAGAGACTTA+TGG - chr3_2:89932144-89932163 Msa0436370:intron 45.0%
! AATGCTTTCGACTCGAGTTG+AGG + chr3_2:89932761-89932780 None:intergenic 45.0%
TGAGCTGAATGTATTGCAGC+AGG - chr3_2:89932000-89932019 Msa0436370:intron 45.0%
GAATGTATTGCAGCAGGAAG+TGG - chr3_2:89932006-89932025 Msa0436370:intron 45.0%
GAACTTCCAGGTCAGATTTC+TGG + chr3_2:89932831-89932850 None:intergenic 45.0%
TTTCCACAAGCTGAACTTCC+AGG + chr3_2:89932057-89932076 None:intergenic 45.0%
CCATAAGTCTCTCTTGTTCC+AGG + chr3_2:89932540-89932559 None:intergenic 45.0%
CCTGGAACAAGAGAGACTTA+TGG - chr3_2:89932144-89932163 Msa0436370:intron 45.0%
CCTGGAGATGATTGATCACT+TGG + chr3_2:89933059-89933078 None:intergenic 45.0%
CCAAGTGATCAATCATCTCC+AGG - chr3_2:89933056-89933075 Msa0436370:intron 45.0%
GCTCACCAAAGGCAACTATT+TGG + chr3_2:89933116-89933135 None:intergenic 45.0%
GCAGCGCAAAAAAATGGAGT+TGG - chr3_2:89933179-89933198 Msa0436370:intron 45.0%
GCTCTTCAACTTCACTCTTC+TGG + chr3_2:89933224-89933243 None:intergenic 45.0%
!! GCTCTAAAGTGTTCAACTCG+CGG + chr3_2:89933263-89933282 None:intergenic 45.0%
CCAGTTTACTGATCTCATCC+CGG + chr3_2:89933323-89933342 None:intergenic 45.0%
TGAGATCAGTAAACTGGCAC+AGG - chr3_2:89933326-89933345 Msa0436370:intron 45.0%
! ATTTGAGTTCTCTGCGCTTC+AGG - chr3_2:89933407-89933426 Msa0436370:five_prime_UTR 45.0%
ACACACAGAAGTCCTCAGAA+TGG - chr3_2:89933572-89933591 Msa0436370:intron 45.0%
ATGGCAGAAGAGTTTCGTGA+AGG - chr3_2:89933762-89933781 Msa0436370:intron 45.0%
! GAAGAGTTTCGTGAAGGCAT+TGG - chr3_2:89933768-89933787 Msa0436370:intron 45.0%
TGAAGACCTGAAAAGAGACC+TGG - chr3_2:89933830-89933849 Msa0436370:intron 45.0%
AAAAGAGACCTGGAGGAGAA+AGG - chr3_2:89933840-89933859 Msa0436370:intron 45.0%
TGAAGACAGGATTGCTACTC+TGG - chr3_2:89934019-89934038 Msa0436370:intron 45.0%
! CATGGGAGATGTTTGAGATG+TGG + chr3_2:89934178-89934197 None:intergenic 45.0%
AAACATCTCCCATGAGCTTC+AGG - chr3_2:89934184-89934203 Msa0436370:five_prime_UTR 45.0%
! CTTTTGCAACCTGAAGCTCA+TGG + chr3_2:89934196-89934215 None:intergenic 45.0%
AGCGAGATGAATAGGGTGAA+GGG - chr3_2:89934224-89934243 Msa0436370:intron 45.0%
ACTGCAGGGTAAAAAGGAAG+AGG - chr3_2:89934283-89934302 Msa0436370:intron 45.0%
GGAAAAGGTTGAGAAGCTAG+AGG - chr3_2:89934319-89934338 Msa0436370:intron 45.0%
! AGAGAAAGAGGAAGGCATGT+TGG - chr3_2:89934436-89934455 Msa0436370:five_prime_UTR 45.0%
TGAGATAGTCACTACACTCG+CGG + chr3_2:89934520-89934539 None:intergenic 45.0%
CGAGTGTAGTGACTATCTCA+AGG - chr3_2:89934520-89934539 Msa0436370:five_prime_UTR 45.0%
ATCATATCGAAGACACGCAG+GGG - chr3_2:89934545-89934564 Msa0436370:five_prime_UTR 45.0%
!! AAAATACAAAAAAAAAAAAA+GGG + chr3_2:89929032-89929051 None:intergenic 5.0%
!! TAAAATACAAAAAAAAAAAA+AGG + chr3_2:89929033-89929052 None:intergenic 5.0%
!!! TTTTTTTTTTTTTGTATTTT+AGG - chr3_2:89929032-89929051 Msa0436370:CDS 5.0%
!!! TTTTTTTTTTTTGTATTTTA+GGG - chr3_2:89929033-89929052 Msa0436370:CDS 5.0%
TTGTGCACATCCTGTGCATG+TGG + chr3_2:89929236-89929255 None:intergenic 50.0%
ATGCACAGGATGTGCACAAG+TGG - chr3_2:89929237-89929256 Msa0436370:CDS 50.0%
CTGCCAAACTGTGCAGGAAT+TGG - chr3_2:89929343-89929362 Msa0436370:CDS 50.0%
GTGCCAATTCCTGCACAGTT+TGG + chr3_2:89929349-89929368 None:intergenic 50.0%
GGTTTGGGAGATTGCAGTAG+AGG + chr3_2:89929700-89929719 None:intergenic 50.0%
TTGGTTGTGTCTCATCGTGC+TGG + chr3_2:89929930-89929949 None:intergenic 50.0%
GGCCTGCATCATCTCAGTTA+AGG + chr3_2:89930021-89930040 None:intergenic 50.0%
!!! TCGTACCTGTTTTAGCTCCC+TGG + chr3_2:89930453-89930472 None:intergenic 50.0%
CATGGGGCAGAGTGTAATTG+TGG + chr3_2:89930483-89930502 None:intergenic 50.0%
! CTGAGGTACCATCCTCTTCA+AGG + chr3_2:89930665-89930684 None:intergenic 50.0%
GAGAGCTGTCTCTTTCTCCA+TGG + chr3_2:89931228-89931247 None:intergenic 50.0%
GAGACAGCTCTCCAACAGAT+TGG - chr3_2:89931236-89931255 Msa0436370:CDS 50.0%
AGCTCTCCAACAGATTGGTG+AGG - chr3_2:89931241-89931260 Msa0436370:CDS 50.0%
CCTCTGTAACCTCCAGATTG+TGG + chr3_2:89931418-89931437 None:intergenic 50.0%
CCACAATCTGGAGGTTACAG+AGG - chr3_2:89931415-89931434 Msa0436370:intron 50.0%
GGAGGTTGACAGAAAATCCC+TGG - chr3_2:89932126-89932145 Msa0436370:intron 50.0%
GGAGGTTAGCAGAAAATCCC+TGG - chr3_2:89932519-89932538 Msa0436370:intron 50.0%
ACGACACCAGAAATCTGACC+TGG - chr3_2:89932822-89932841 Msa0436370:intron 50.0%
TGACCTGGAAGTTCAGCTTG+TGG - chr3_2:89932837-89932856 Msa0436370:intron 50.0%
GGAGGTTGACAGAAAATCCC+TGG - chr3_2:89932126-89932145 Msa0436370:intron 50.0%
AGCGCAGCAGCGCAAAAAAA+TGG - chr3_2:89933173-89933192 Msa0436370:intron 50.0%
! TTCACTCTTCTGGCTGCGTA+TGG + chr3_2:89933214-89933233 None:intergenic 50.0%
AGTGTTCAACTCGCGGTCTT+TGG + chr3_2:89933256-89933275 None:intergenic 50.0%
CCGGGATGAGATCAGTAAAC+TGG - chr3_2:89933320-89933339 Msa0436370:intron 50.0%
AGACCTGAAAAGAGACCTGG+AGG - chr3_2:89933833-89933852 Msa0436370:intron 50.0%
! TCTCCTCCAGGTCTCTTTTC+AGG + chr3_2:89933839-89933858 None:intergenic 50.0%
CTTCATCTCCTTTCTCCTCC+AGG + chr3_2:89933851-89933870 None:intergenic 50.0%
GCCTGTCAAACCAAAAGCTC+CGG - chr3_2:89933916-89933935 Msa0436370:intron 50.0%
CCTGTCAAACCAAAAGCTCC+GGG - chr3_2:89933917-89933936 Msa0436370:intron 50.0%
! GTTCTGTAACCCGGAGCTTT+TGG + chr3_2:89933929-89933948 None:intergenic 50.0%
CTGGGATAGATACTGTGAGC+AGG - chr3_2:89934120-89934139 Msa0436370:intron 50.0%
CAGCGAGATGAATAGGGTGA+AGG - chr3_2:89934223-89934242 Msa0436370:intron 50.0%
GCGAGATGAATAGGGTGAAG+GGG - chr3_2:89934225-89934244 Msa0436370:intron 50.0%
! TCGTTTGTTGGAGGAACTGC+AGG - chr3_2:89934268-89934287 Msa0436370:intron 50.0%
! CGTTTGTTGGAGGAACTGCA+GGG - chr3_2:89934269-89934288 Msa0436370:intron 50.0%
GGAGGAACTGCAGGGTAAAA+AGG - chr3_2:89934277-89934296 Msa0436370:intron 50.0%
! AGAGGAAGGCATGTTGGACT+TGG - chr3_2:89934442-89934461 Msa0436370:five_prime_UTR 50.0%
! GAGGAAGGCATGTTGGACTT+GGG - chr3_2:89934443-89934462 Msa0436370:five_prime_UTR 50.0%
TGGACTTGGGAGAGGAAAAG+AGG - chr3_2:89934456-89934475 Msa0436370:five_prime_UTR 50.0%
GGACTTGGGAGAGGAAAAGA+GGG - chr3_2:89934457-89934476 Msa0436370:five_prime_UTR 50.0%
TCCTGCACAGTTTGGCAGTG+TGG + chr3_2:89929341-89929360 None:intergenic 55.0%
! TTGTGTCTCATCGTGCTGGC+TGG + chr3_2:89929926-89929945 None:intergenic 55.0%
CAGCTCCAGGGAGCTAAAAC+AGG - chr3_2:89930445-89930464 Msa0436370:CDS 55.0%
ACCCTCACTCAGATCCACGA+AGG - chr3_2:89931575-89931594 Msa0436370:five_prime_UTR 55.0%
CCCTTCGTGGATCTGAGTGA+GGG + chr3_2:89931579-89931598 None:intergenic 55.0%
CCCTCACTCAGATCCACGAA+GGG - chr3_2:89931576-89931595 Msa0436370:five_prime_UTR 55.0%
AAGGCAGAGGAAGAGGCTTC+AGG - chr3_2:89933441-89933460 Msa0436370:intron 55.0%
!!! CCCGGAGCTTTTGGTTTGAC+AGG + chr3_2:89933920-89933939 None:intergenic 55.0%
GGTTGAGAAGCTAGAGGCGA+AGG - chr3_2:89934325-89934344 Msa0436370:intron 55.0%
GCTAGAGGCGAAGGCAAGAA+AGG - chr3_2:89934334-89934353 Msa0436370:five_prime_UTR 55.0%
AGAGGCGAAGGCAAGAAAGG+AGG - chr3_2:89934337-89934356 Msa0436370:five_prime_UTR 55.0%
AGGCATGTTGGACTTGGGAG+AGG - chr3_2:89934448-89934467 Msa0436370:five_prime_UTR 55.0%
CTTGGGAGAGGAAAAGAGGG+AGG - chr3_2:89934460-89934479 Msa0436370:five_prime_UTR 55.0%
AGGAAAAGAGGGAGGCCATC+AGG - chr3_2:89934468-89934487 Msa0436370:five_prime_UTR 55.0%
CCACAAACAGAGCTGCCTGA+TGG + chr3_2:89934486-89934505 None:intergenic 55.0%
CCATCAGGCAGCTCTGTTTG+TGG - chr3_2:89934483-89934502 Msa0436370:five_prime_UTR 55.0%
GCCACACTGCCAAACTGTGC+AGG - chr3_2:89929337-89929356 Msa0436370:CDS 60.0%
GCCCTTCGTGGATCTGAGTG+AGG + chr3_2:89931580-89931599 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 89927321 89934583 89927321 ID=Msa0436370;Name=Msa0436370
chr3_2 mRNA 89927321 89934583 89927321 ID=Msa0436370-mRNA-1;Parent=Msa0436370;Name=Msa0436370-mRNA-1;_AED=0.26;_eAED=0.26;_QI=492|1|0.8|1|0.25|0.4|5|0|1354
chr3_2 exon 89927321 89931291 89927321 ID=Msa0436370-mRNA-1:exon:26744;Parent=Msa0436370-mRNA-1
chr3_2 exon 89931438 89931612 89931438 ID=Msa0436370-mRNA-1:exon:26743;Parent=Msa0436370-mRNA-1
chr3_2 exon 89933359 89933434 89933359 ID=Msa0436370-mRNA-1:exon:26742;Parent=Msa0436370-mRNA-1
chr3_2 exon 89934155 89934238 89934155 ID=Msa0436370-mRNA-1:exon:26741;Parent=Msa0436370-mRNA-1
chr3_2 exon 89934333 89934583 89934333 ID=Msa0436370-mRNA-1:exon:26740;Parent=Msa0436370-mRNA-1
chr3_2 five_prime_UTR 89934333 89934583 89934333 ID=Msa0436370-mRNA-1:five_prime_utr;Parent=Msa0436370-mRNA-1
chr3_2 five_prime_UTR 89934155 89934238 89934155 ID=Msa0436370-mRNA-1:five_prime_utr;Parent=Msa0436370-mRNA-1
chr3_2 five_prime_UTR 89933359 89933434 89933359 ID=Msa0436370-mRNA-1:five_prime_utr;Parent=Msa0436370-mRNA-1
chr3_2 five_prime_UTR 89931532 89931612 89931532 ID=Msa0436370-mRNA-1:five_prime_utr;Parent=Msa0436370-mRNA-1
chr3_2 CDS 89931438 89931531 89931438 ID=Msa0436370-mRNA-1:cds;Parent=Msa0436370-mRNA-1
chr3_2 CDS 89927321 89931291 89927321 ID=Msa0436370-mRNA-1:cds;Parent=Msa0436370-mRNA-1
Gene Sequence

>Msa0436370

ATGGTGAAACATCACTTGAGAAAGTCTATAAAATCGCTGTTTGAAAGTCACATTGACCCTGATAAAGAAGAGCAGCTCCAGGGAGCTAAAACAGAAATTGAAGACAAAGTTAAAAGGATATTGAAACTTATTAAAGATGACAACCTTGAAGAGGATGGTACCTCAGCAGAAATTTTGAAGAGGGAACCGCTTGCTGAATTGATTGAGGATATCCACAATCAATACCAATTGATTTACACACAGCATGATCATCTGACAGGTGAGTTAAAGAAAAGGATCAAAGGCAAGCGAGAAAAAGGAAGTTCTTCATCCAGCTCTGATTCAGATTCGGATTCGGATTATTCTTCAAAGGACAGAGGCAGCAAAAATGGTCAACTGCAAAATGAGTTTCAAAAGATAATTGATGGATTAAAGCAAGAACTTGAAGTGGCGCATAAGGAAGTCGCTGACTTAAATCAGAAGTTGACAGTTACACATGAAGAGAAGGAGAACATAAGTTCAAAACACCTTGCAGCATTGACCAAGATACAAGAAGCAGACAAGGTTAGTATGAATTTGAAAACTGATGCTGAGGCATTTGAGATACAAATATCAAAACTTTTGGCTGAGAATACTGAACTAAATAAGCAACTGGACATTGCTGGTAGAGTAGAAGCTGAACTGAGTCAAAAATTGGAGGATATGAAGACAGAAAACAATAGCTTGGCCATGGAGAAAGAGACAGCTCTCCAACAGATTGGTGAGGAAAGGAAGATTACAGATGACCTGAGAAACCTAGTTGATCAATTGAAGGATGATAAGTCAGTGATTGCAAAGGAATTACAAGCAGCAACAGATGAACTTTCTATTCTGAAGCAGCAATTGAAACATGCAGAACAACAAATAACAACAATAAGCCACAATCTGGAGGTTACAGAGGAAGAAAATAAATCATTAAAAGCAGAAATTTCACAAGCTTCAAATGAGATTCAGCTGTCTCAGAACAGAATACAGGAATTTGCATCTGAATTAAGTCAGTTAAAGGAGAAACATGATGAGAAAGACAGGGAAGTGTCAACCCTCACTCAGATCCACGAAGGGCATAAGAATGAGTCCTCAAATCTTATCAGGGAACTAGAGACACAAATCACAAATCTGGGGATGGAATTAGCATCACTGCAAAACGAGAAAAAAGATATGGAGGATCAACTTAAGAGCAGCACCACTGAAAAAAGAGAACTGGAAGAGCGCAATTTAGGCTTGCTAAACCAAATTTCAGAACTTGAAATGAAGTCCAAAGAAAGAGAAGAGGAACTATCTGCTATCATGAAGAAACTCAAAGATAATGGGGATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGACAATTTGCTCGCTGATTTAAGCTCATTACATGCTCAGAAAACTGAACTGGAAGAGCAAATAATTTTTAAAAGTAATGAAGCCTCAACTCGAGTTGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACAACACCAGAAATCTGACTTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCCGAGTGTTCAATTCAAATTCAAAGTCTGAAAGAGGAGGTTGACAGAAAATCCCTGGAACAAGAGAGACTTATAGAAGACAGAGAACATTTTACAAAAGAAAGAGAAGAGGAACTATCTGATATCATGAAGAAACTCCAAGATAATGAGAATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGACAATTTGTTGGCTGATATTAGCTCATTACATGCTCAGAAAAATGAACTGGAAGAGCAAATAATTTTTAAAAGTAATGAAGCCTCAAATCAAGTCGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACAACACCAGAAATCTGACTTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCAGAGTGTTCAATTCAAATTCAAAGTCTGAAAGAGGAGGTTAGCAGAAAATCCCTGGAACAAGAGAGACTTATGGAAGACAGAGAAAATTTTACAAAAGAAAGAGAAGCGGAACTATCTGATATCATGAAGAAACTCAAAGATAATGAGAATGAATCATCTTCCAAAATATCAGATTTGACATCTCAGATAGAAAATTTGTTGGCTGATATTAGCTCATTACATGCTCAGAAAAATGAACTGGAAGAGCAAATTATTTTTAAAAGTAATGAAGCCTCAACTCGAGTCGAAAGCATTACAAATGAGCTGAATGTATTGCAGCAGGAAGTGGAGTCTCTACGACACCAGAAATCTGACCTGGAAGTTCAGCTTGTGGAAAAAAGCCAAGAAAATTCCGAGTGTTCAATTCAAATTCAGAGTCTGAAAGAGGAGGTTGACAGAAAATCCCTGGAACAAGAGAGACTTATGGAAGACAGAGAAAATTTAACCAGGCAGATAAAGAATCTGGAACTGGAGATAAGCTCCATCAAGAGCAAAAATAGCAAAGATGAAGAGCAAATAAGGACCAACGTCCAAGTGATCAATCATCTCCAGGATAAAATTCATATGGCAGAGATAGAAGGTTCAACCCAAATAGTTGCCTTTGGTGAGCAAATTAAGAATCTTCAACTTAATTTGGCACAGGAACTAGCGCAGCAGCGCAAAAAAATGGAGTTGGAGCTGGATTCCATACGCAGCCAGAAGAGTGAAGTTGAAGAGCAGTTAAGAGCCAAAGACCGCGAGTTGAACACTTTAGAGCAAAAAGAAAGTGAATACGCAAAGCAAATAAGTGCTAACCGGGATGAGATCAGTAAACTGGCACAGGAAAATTTGGAGCTAGCAGACAAAATAGATCATTCGGAGAGAGGATTAGCAACAAGAGAATTTGAGTTCTCTGCGCTTCAGGATAAACTTTATAAGGCAGAGGAAGAGGCTTCAGGAAAAACAATTGCCTTCACAGCTCAAGTTGACAATCTGAAAAAGGACTTGCTTTCCTTGCAGAAAACAAAAGAAGAATTGGAGCTCTGCTGTGAAAATATCAAAGAAGAACACACAGAAGTCCTCAGAATGGTTGACAATGAAAAGAATGAATTAGCCAACAAAAACATGGATCTTCAGAGAACATTGGAAGAACGAGAAGATGCATATCAGAAGTTGAATGAAGAATATAAACAAATTGATAATTGGTTTAATGAATACAAGGTCAAACTTGAAGTTGCTGAGAGGAAAATGGAAGAAATGGCAGAAGAGTTTCGTGAAGGCATTGGGTCAAAAGATCAGATGGTAACTGATTTGGAACAGCAAGTTGAAGACCTGAAAAGAGACCTGGAGGAGAAAGGAGATGAAGTCAGCACTTTGTTTGAGAATGTCAGGAATCTTGAGGTAAAGCTTCGCCTGTCAAACCAAAAGCTCCGGGTTACAGAACAATTGCTAAGTGAAAAGGAAGATAGCTTTAGAAAGGCGGAACAAGAGTTTCAGCAAGTTCAGAGAGAACTTGAAGACAGGATTGCTACTCTGGTAGCTACAATCACCGCTAACAATGAAGCTTTTCATGAAACTATCACAAGTGTTAAAGTGTGTGTCAACAGTGTGATATCTGGGATAGATACTGTGAGCAGGAAATTTTCCGACGAAAGCAAAAATCATGAGAACCACATCTCAAACATCTCCCATGAGCTTCAGGTTGCAAAAGAATCTGTCAGCGAGATGAATAGGGTGAAGGGGCAGTTACAGAGAGATAAAGATCGTTTGTTGGAGGAACTGCAGGGTAAAAAGGAAGAGGAATTAACTCTGAGGGAAAAGGTTGAGAAGCTAGAGGCGAAGGCAAGAAAGGAGGAATCAGAGAAGATGAATGTGACATCAACTGTTGTTGAACTTAAGAAGACGGTTGAGGCGCTAGAGAAGTTGATGAAAGAGAAAGAGGAAGGCATGTTGGACTTGGGAGAGGAAAAGAGGGAGGCCATCAGGCAGCTCTGTTTGTGGATTGATTATCACCGCGAGTGTAGTGACTATCTCAAGGAAATCATATCGAAGACACGCAGGGGCCAGAGAGCAGCATAA

Protein sequence

>Msa0436370

MVKHHLRKSIKSLFESHIDPDKEEQLQGAKTEIEDKVKRILKLIKDDNLEEDGTSAEILKREPLAELIEDIHNQYQLIYTQHDHLTGELKKRIKGKREKGSSSSSSDSDSDSDYSSKDRGSKNGQLQNEFQKIIDGLKQELEVAHKEVADLNQKLTVTHEEKENISSKHLAALTKIQEADKVSMNLKTDAEAFEIQISKLLAENTELNKQLDIAGRVEAELSQKLEDMKTENNSLAMEKETALQQIGEERKITDDLRNLVDQLKDDKSVIAKELQAATDELSILKQQLKHAEQQITTISHNLEVTEEENKSLKAEISQASNEIQLSQNRIQEFASELSQLKEKHDEKDREVSTLTQIHEGHKNESSNLIRELETQITNLGMELASLQNEKKDMEDQLKSSTTEKRELEERNLGLLNQISELEMKSKEREEELSAIMKKLKDNGDESSSKISDLTSQIDNLLADLSSLHAQKTELEEQIIFKSNEASTRVESITNELNVLQQEVESLQHQKSDLEVQLVEKSQENSECSIQIQSLKEEVDRKSLEQERLIEDREHFTKEREEELSDIMKKLQDNENESSSKISDLTSQIDNLLADISSLHAQKNELEEQIIFKSNEASNQVESITNELNVLQQEVESLQHQKSDLEVQLVEKSQENSECSIQIQSLKEEVSRKSLEQERLMEDRENFTKEREAELSDIMKKLKDNENESSSKISDLTSQIENLLADISSLHAQKNELEEQIIFKSNEASTRVESITNELNVLQQEVESLRHQKSDLEVQLVEKSQENSECSIQIQSLKEEVDRKSLEQERLMEDRENLTRQIKNLELEISSIKSKNSKDEEQIRTNVQVINHLQDKIHMAEIEGSTQIVAFGEQIKNLQLNLAQELAQQRKKMELELDSIRSQKSEVEEQLRAKDRELNTLEQKESEYAKQISANRDEISKLAQENLELADKIDHSERGLATREFEFSALQDKLYKAEEEASGKTIAFTAQVDNLKKDLLSLQKTKEELELCCENIKEEHTEVLRMVDNEKNELANKNMDLQRTLEEREDAYQKLNEEYKQIDNWFNEYKVKLEVAERKMEEMAEEFREGIGSKDQMVTDLEQQVEDLKRDLEEKGDEVSTLFENVRNLEVKLRLSNQKLRVTEQLLSEKEDSFRKAEQEFQQVQRELEDRIATLVATITANNEAFHETITSVKVCVNSVISGIDTVSRKFSDESKNHENHISNISHELQVAKESVSEMNRVKGQLQRDKDRLLEELQGKKEEELTLREKVEKLEAKARKEESEKMNVTSTVVELKKTVEALEKLMKEKEEGMLDLGEEKREAIRQLCLWIDYHRECSDYLKEIISKTRRGQRAA*