AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1158660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158660 MtrunA17_Chr7g0253361 80.184 217 1 1 1 175 1 217 2.82e-121 341
Msa1158660 MtrunA17_Chr1g0151811 76.190 42 10 0 134 175 252 293 3.38e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1158660 AT1G55340.1 39.819 221 66 9 4 175 3 205 6.36e-34 119
Msa1158660 AT1G55340.2 38.356 219 62 7 4 175 3 195 8.56e-32 113
Msa1158660 AT3G03880.1 38.389 211 61 7 13 175 4 193 4.66e-31 111

Find 111 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAATAAGCTAATAAATTT+TGG 0.063644 7_4:-48050156 Msa1158660:three_prime_UTR
ACAAAGAATCTAAACTATTT+TGG 0.102004 7_4:-48051102 Msa1158660:three_prime_UTR
AATGGGATTGAACTCTTTAT+AGG 0.166067 7_4:+48050097 None:intergenic
ATACTCTTCAGTTGAAATTA+TGG 0.213584 7_4:+48050489 None:intergenic
TCATGTTTATCATTTCAAAA+TGG 0.220145 7_4:+48050001 None:intergenic
TGAGGCATAGATCTTAAATT+TGG 0.232864 7_4:-48052728 Msa1158660:five_prime_UTR
ATGATATACCAAAGTCTTAA+AGG 0.232922 7_4:+48052698 None:intergenic
CTGTTGCCTTACATGCTCTT+TGG 0.238559 7_4:+48052572 None:intergenic
GGCCATGAATTGTTTGGATT+TGG 0.268749 7_4:+48049926 None:intergenic
CTTCATTGATTTGATTGAAA+TGG 0.283720 7_4:+48050968 None:intergenic
ATCAGAAGAAAGCTTAATTC+TGG 0.302031 7_4:-48052454 Msa1158660:CDS
CATTTCAAAATGGGAGAATC+AGG 0.307895 7_4:+48050011 None:intergenic
ATTGAATCTTTCAACTTTCC+CGG 0.313674 7_4:-48049784 Msa1158660:three_prime_UTR
GGATTCAGAGAAGAAGAAAA+AGG 0.333201 7_4:+48052903 None:intergenic
GTCAAGAGAGATATGAAGTT+AGG 0.367836 7_4:-48051347 Msa1158660:CDS
TTTGGATGTAATAAATCATA+TGG 0.369892 7_4:-48050628 Msa1158660:three_prime_UTR
GCCATGAATTGTTTGGATTT+GGG 0.370840 7_4:+48049927 None:intergenic
AAGAGATCTCGATAATAAAA+TGG 0.374421 7_4:-48050386 Msa1158660:three_prime_UTR
CATGTTTATCATTTCAAAAT+GGG 0.379197 7_4:+48050002 None:intergenic
AAATGATAAACATGATGATC+TGG 0.381344 7_4:-48049993 Msa1158660:three_prime_UTR
AACAACCTTGTGAGACGATT+AGG 0.386278 7_4:+48052364 None:intergenic
TCTTCTTGCAGTGGGGAAAC+AGG 0.395699 7_4:-48052540 Msa1158660:CDS
TATGCAAATATTTGAGAGGT+TGG 0.398405 7_4:-48051138 Msa1158660:three_prime_UTR
TGAAGTTTCAATTTCAAAAG+AGG 0.407450 7_4:-48050729 Msa1158660:three_prime_UTR
TGCAATGGCCATGAATTGTT+TGG 0.413077 7_4:+48049920 None:intergenic
CGGATTTCAACTAGGCTTAA+CGG 0.415814 7_4:-48052484 Msa1158660:CDS
TCAAGAGAGATATGAAGTTA+GGG 0.417350 7_4:-48051346 Msa1158660:CDS
TGTTTACAGTTGGTAAGTCC+TGG 0.420464 7_4:-48051390 Msa1158660:intron
CCCATAGCCTTCAATCCTCT+TGG 0.424567 7_4:+48051196 None:intergenic
AAACCCTCTTTAATTGCAAA+AGG 0.427755 7_4:+48050071 None:intergenic
GAGGAACCAAAGAGCATGTA+AGG 0.432240 7_4:-48052578 Msa1158660:CDS
ACCCAAATCCAAACAATTCA+TGG 0.437111 7_4:-48049928 Msa1158660:three_prime_UTR
AAAACAAAACTTGGTGGGAA+TGG 0.442500 7_4:+48050840 None:intergenic
GAAGCAACCCTTTAAGACTT+TGG 0.451381 7_4:-48052706 Msa1158660:intron
GGAGTGGAGAATCATCGTTC+TGG 0.453670 7_4:-48052433 Msa1158660:CDS
TTCAAAACAATTAAAGAGAT+GGG 0.458170 7_4:-48050583 Msa1158660:three_prime_UTR
GAAAAGAAAATATGATGAAG+AGG 0.458502 7_4:+48050762 None:intergenic
GGCCGGAGATAACAGAAAAT+CGG 0.460576 7_4:-48051762 Msa1158660:CDS
TGATATACCAAAGTCTTAAA+GGG 0.462098 7_4:+48052699 None:intergenic
AAATCTGCAGTCAAATCATC+TGG 0.462390 7_4:+48049965 None:intergenic
ATTGAATCTTTCAACTTTCG+CGG 0.463660 7_4:-48049857 Msa1158660:three_prime_UTR
GAAGAACTGAAATGTACCTT+TGG 0.470027 7_4:-48050646 Msa1158660:three_prime_UTR
CCAAGAGGATTGAAGGCTAT+GGG 0.481069 7_4:-48051196 Msa1158660:CDS
CTTCAAAACAATTAAAGAGA+TGG 0.484827 7_4:-48050584 Msa1158660:three_prime_UTR
GCAGAGGCCAAGAGGATTGA+AGG 0.486507 7_4:-48051203 Msa1158660:intron
GATTTGGGTTCCCTACTGTC+AGG 0.486865 7_4:+48049942 None:intergenic
CTTTCTTCTAGTTAAGCACT+AGG 0.491872 7_4:-48050412 Msa1158660:three_prime_UTR
TCTTTCAACTTTCGCGGCCA+CGG 0.492000 7_4:-48049851 Msa1158660:three_prime_UTR
TTGATTTGATTGAAATGGAT+CGG 0.493315 7_4:+48050973 None:intergenic
GCCAAGAGGATTGAAGGCTA+TGG 0.494932 7_4:-48051197 Msa1158660:CDS
AACATCGCAAGTGCCTTTAC+CGG 0.498467 7_4:+48051685 None:intergenic
AAGATCCTCGGATTTCAACT+AGG 0.502257 7_4:-48052492 Msa1158660:CDS
ACCAGAGTTCTTCTTGCAGT+GGG 0.504536 7_4:-48052548 Msa1158660:CDS
AATTTCAACTGAAGAGTATG+AGG 0.505907 7_4:-48050485 Msa1158660:three_prime_UTR
CCCCACTGCAAGAAGAACTC+TGG 0.514893 7_4:+48052547 None:intergenic
TCAGCAGAGGACACCGGTAA+AGG 0.516208 7_4:-48051698 Msa1158660:CDS
GGAAGCGTTTGAGATGTGTA+AGG 0.516835 7_4:-48052519 Msa1158660:CDS
GGAGAAGAAAAGTAACAAGA+AGG 0.520874 7_4:-48051325 Msa1158660:intron
ATTGAAGGCTATGGGGAGTG+TGG 0.522393 7_4:-48051188 Msa1158660:CDS
GGCACTTGCGATGTTATCAA+TGG 0.530662 7_4:-48051677 Msa1158660:CDS
ACATTTCAGTTCTTCAATGT+CGG 0.531555 7_4:+48050654 None:intergenic
CTGCAGATTTCCTGACAGTA+GGG 0.531993 7_4:-48049952 Msa1158660:three_prime_UTR
TAACAGAAAATCGGCATCAC+CGG 0.532579 7_4:-48051753 Msa1158660:CDS
ATATCAGTCAACCATGCTCC+AGG 0.532665 7_4:+48051372 None:intergenic
TGGATATATTTGCCTGCTTG+AGG 0.538629 7_4:+48050509 None:intergenic
AAAATCGGCATCACCGGAGA+AGG 0.542456 7_4:-48051747 Msa1158660:CDS
CAATTAAAGAGGGTTTATTG+AGG 0.547313 7_4:-48050064 Msa1158660:three_prime_UTR
TAGTATCGATCTTCCTTCTC+CGG 0.549815 7_4:+48051734 None:intergenic
GAGAGAAACAAAACAAAACT+TGG 0.553433 7_4:+48050831 None:intergenic
TTTGTATGCAGGAATTCCGA+TGG 0.553845 7_4:-48051803 Msa1158660:intron
GAAACAAAACAAAACTTGGT+GGG 0.557577 7_4:+48050835 None:intergenic
AAAAGAAAATATGATGAAGA+GGG 0.560105 7_4:+48050763 None:intergenic
AGAGGGTTGCTGAAATATGA+AGG 0.561071 7_4:+48050780 None:intergenic
ACTATTCTACGACCGGCGGC+CGG 0.561495 7_4:-48051779 Msa1158660:CDS
ACTGCAGATTTCCTGACAGT+AGG 0.561923 7_4:-48049953 Msa1158660:three_prime_UTR
AACCAGAGTTCTTCTTGCAG+TGG 0.563420 7_4:-48052549 Msa1158660:CDS
AATTTGTAGCTTCTGCCTCA+CGG 0.564938 7_4:+48049877 None:intergenic
CGATGGAACTATTCTACGAC+CGG 0.568292 7_4:-48051786 Msa1158660:CDS
AGTTGGTAAGTCCTGGAGCA+TGG 0.569217 7_4:-48051383 Msa1158660:CDS
AATTTGTAGCGTATGTGTCA+CGG 0.569867 7_4:+48049804 None:intergenic
TTTCTGTTATCTCCGGCCGC+CGG 0.574206 7_4:+48051767 None:intergenic
AATGATAAACATGATGATCT+GGG 0.575220 7_4:-48049992 Msa1158660:three_prime_UTR
ATATGATTTATTACATCCAA+AGG 0.579375 7_4:+48050630 None:intergenic
ATTTCAAAATGGGAGAATCA+GGG 0.581880 7_4:+48050012 None:intergenic
AGCGTATGTGTCACGGCTTG+CGG 0.590786 7_4:+48049811 None:intergenic
GATTAATGTAAGCCTCAAGC+AGG 0.593489 7_4:-48050521 Msa1158660:three_prime_UTR
GTATGAGGCTAAATAAAGCA+TGG 0.599364 7_4:-48050470 Msa1158660:three_prime_UTR
TTTGGGAAGATGGAAGATGC+TGG 0.601508 7_4:-48051084 Msa1158660:three_prime_UTR
GTGTAAGGGTGAAAGATCCT+CGG 0.610227 7_4:-48052504 Msa1158660:CDS
TAGACAAAGTAGCTTACATG+TGG 0.613840 7_4:-48050240 Msa1158660:three_prime_UTR
AGAAACAAAACAAAACTTGG+TGG 0.615063 7_4:+48050834 None:intergenic
TTATTATGCAAATATTTGAG+AGG 0.616149 7_4:-48051142 Msa1158660:three_prime_UTR
AAGAAAGCTTAATTCTGGAG+TGG 0.623077 7_4:-48052449 Msa1158660:CDS
CGGTCGTAGAATAGTTCCAT+CGG 0.626224 7_4:+48051787 None:intergenic
GGCACTGAACTTAGACCATG+TGG 0.626472 7_4:-48050341 Msa1158660:three_prime_UTR
TAGAAATGGAGACAGAAGAG+AGG 0.628747 7_4:-48052597 Msa1158660:exon
AGATCGATACTACACGACGA+GGG 0.631631 7_4:-48051723 Msa1158660:CDS
TCAAAACAATTAAAGAGATG+GGG 0.635459 7_4:-48050582 Msa1158660:three_prime_UTR
GCTAAATAAAGCATGGATCG+TGG 0.641350 7_4:-48050463 Msa1158660:three_prime_UTR
AGTCTAAAGCAAGTTTGCAA+TGG 0.643883 7_4:+48049905 None:intergenic
GATCGATACTACACGACGAG+GGG 0.647579 7_4:-48051722 Msa1158660:CDS
GAAGCGTTTGAGATGTGTAA+GGG 0.650307 7_4:-48052518 Msa1158660:CDS
CAAGAGGATTGAAGGCTATG+GGG 0.656812 7_4:-48051195 Msa1158660:CDS
CCAGAGTTCTTCTTGCAGTG+GGG 0.679245 7_4:-48052547 Msa1158660:CDS
AACAACCTAATCGTCTCACA+AGG 0.681018 7_4:-48052369 Msa1158660:intron
TGGAACTATTCTACGACCGG+CGG 0.694045 7_4:-48051783 Msa1158660:CDS
AAGATCGATACTACACGACG+AGG 0.699452 7_4:-48051724 Msa1158660:CDS
TTAAGCCTAGTTGAAATCCG+AGG 0.705168 7_4:+48052487 None:intergenic
ATTTCAACTAGGCTTAACGG+TGG 0.734742 7_4:-48052481 Msa1158660:CDS
TATAAATTTAGACACCCACA+TGG 0.739600 7_4:+48050326 None:intergenic
GCACTGAACTTAGACCATGT+GGG 0.743602 7_4:-48050340 Msa1158660:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATGTTGTTTTTATTA+TGG - chr7_4:48051358-48051377 Msa1158660:CDS 10.0%
!! ATTAAGAGATAAAATAAAAA+AGG + chr7_4:48051582-48051601 None:intergenic 10.0%
!!! ATTTTGAGTAAAAGAAAAAA+TGG - chr7_4:48050673-48050692 Msa1158660:three_prime_UTR 15.0%
!!! AAAGAAAAAATGGTTTTTTT+TGG - chr7_4:48050683-48050702 Msa1158660:three_prime_UTR 15.0%
!!! ATTTTTTATGTGATTTTGAT+TGG - chr7_4:48051012-48051031 Msa1158660:three_prime_UTR 15.0%
!!! TTGTTTTTATTATGGTTAAT+TGG - chr7_4:48051366-48051385 Msa1158660:CDS 15.0%
!!! TGTTTTTATTATGGTTAATT+GGG - chr7_4:48051367-48051386 Msa1158660:CDS 15.0%
!! GCTTACAATGATAAAAAAAT+TGG + chr7_4:48049963-48049982 None:intergenic 20.0%
!!! TATGTTTTTTGTTGTAGAAA+TGG - chr7_4:48050231-48050250 Msa1158660:three_prime_UTR 20.0%
!!! TGAAAAAAAAAACTGGATTT+TGG - chr7_4:48050575-48050594 Msa1158660:three_prime_UTR 20.0%
!! AATACAAGTTTATATCATCT+GGG + chr7_4:48050905-48050924 None:intergenic 20.0%
!! TTATTATGCAAATATTTGAG+AGG - chr7_4:48051700-48051719 Msa1158660:CDS 20.0%
!!! ACAAAGAATCTAAACTATTT+TGG - chr7_4:48051740-48051759 Msa1158660:CDS 20.0%
!!! CAAAGAATCTAAACTATTTT+GGG - chr7_4:48051741-48051760 Msa1158660:CDS 20.0%
!!! ATCTCTCTTATTTTACTTTA+TGG - chr7_4:48051949-48051968 Msa1158660:intron 20.0%
!! AAAAGAAAATATGATGAAGA+GGG + chr7_4:48052082-48052101 None:intergenic 20.0%
!! ATATGATTTATTACATCCAA+AGG + chr7_4:48052215-48052234 None:intergenic 20.0%
!! TTTGGATGTAATAAATCATA+TGG - chr7_4:48052214-48052233 Msa1158660:intron 20.0%
!! TTCAAAACAATTAAAGAGAT+GGG - chr7_4:48052259-48052278 Msa1158660:intron 20.0%
!!! CACAATAAGCTAATAAATTT+TGG - chr7_4:48052686-48052705 Msa1158660:intron 20.0%
!! TTAATTGCAAAAGGAAAAAT+GGG + chr7_4:48052765-48052784 None:intergenic 20.0%
!! TTTAATTGCAAAAGGAAAAA+TGG + chr7_4:48052766-48052785 None:intergenic 20.0%
!! CATGTTTATCATTTCAAAAT+GGG + chr7_4:48052843-48052862 None:intergenic 20.0%
!! TCATGTTTATCATTTCAAAA+TGG + chr7_4:48052844-48052863 None:intergenic 20.0%
!!! GCAAAAAAAACTGTTTTTTG+AGG - chr7_4:48050096-48050115 Msa1158660:three_prime_UTR 25.0%
! TGATATACCAAAGTCTTAAA+GGG + chr7_4:48050146-48050165 None:intergenic 25.0%
! ATGATATACCAAAGTCTTAA+AGG + chr7_4:48050147-48050166 None:intergenic 25.0%
! CCACAATAGATTTAGATAAA+GGG + chr7_4:48050202-48050221 None:intergenic 25.0%
! ACCACAATAGATTTAGATAA+AGG + chr7_4:48050203-48050222 None:intergenic 25.0%
! TTGAAAACTACCATAACAAA+TGG - chr7_4:48050499-48050518 Msa1158660:three_prime_UTR 25.0%
!!! AATCCAGTTTTTTTTTTCAG+AGG + chr7_4:48050574-48050593 None:intergenic 25.0%
!!! TTTTGGTTTGTGAAAAATGA+TGG - chr7_4:48050592-48050611 Msa1158660:three_prime_UTR 25.0%
!! CTTTTACTCAAAATCAAACA+AGG + chr7_4:48050667-48050686 None:intergenic 25.0%
!!! GTAATGAAGTTGTTTTCATT+TGG - chr7_4:48050729-48050748 Msa1158660:three_prime_UTR 25.0%
!!! TTTTCATTTGGTTGGTTAAT+GGG - chr7_4:48050741-48050760 Msa1158660:three_prime_UTR 25.0%
! GAATACAAACACTGAAAAAA+TGG + chr7_4:48050811-48050830 None:intergenic 25.0%
! GAATACAAGTTTATATCATC+TGG + chr7_4:48050906-48050925 None:intergenic 25.0%
!!! TTGATGGATTTTTTTTCAGA+AGG - chr7_4:48050932-48050951 Msa1158660:three_prime_UTR 25.0%
!!! TGATGGATTTTTTTTCAGAA+GGG - chr7_4:48050933-48050952 Msa1158660:three_prime_UTR 25.0%
!!! ATTTTTTTTCAGAAGGGTAT+TGG - chr7_4:48050939-48050958 Msa1158660:three_prime_UTR 25.0%
! TTATTATGGTTAATTGGGTT+TGG - chr7_4:48051372-48051391 Msa1158660:CDS 25.0%
!! TTGATTTGATTGAAATGGAT+CGG + chr7_4:48051872-48051891 None:intergenic 25.0%
!!! CTTCATTGATTTGATTGAAA+TGG + chr7_4:48051877-48051896 None:intergenic 25.0%
! GAAAAGAAAATATGATGAAG+AGG + chr7_4:48052083-48052102 None:intergenic 25.0%
! TGAAGTTTCAATTTCAAAAG+AGG - chr7_4:48052113-48052132 Msa1158660:intron 25.0%
! CTTCAAAACAATTAAAGAGA+TGG - chr7_4:48052258-48052277 Msa1158660:intron 25.0%
! TCAAAACAATTAAAGAGATG+GGG - chr7_4:48052260-48052279 Msa1158660:intron 25.0%
! TGAAAAAACCAATTAAGGAA+AGG - chr7_4:48052285-48052304 Msa1158660:intron 25.0%
!! CATATTTTCCTTTCCTTAAT+TGG + chr7_4:48052296-48052315 None:intergenic 25.0%
! ATACTCTTCAGTTGAAATTA+TGG + chr7_4:48052356-48052375 None:intergenic 25.0%
! AAGAGATCTCGATAATAAAA+TGG - chr7_4:48052456-48052475 Msa1158660:CDS 25.0%
! CTTAAGCTAAAAATAGCAAT+TGG + chr7_4:48052574-48052593 None:intergenic 25.0%
!!! CAATTGCTATTTTTAGCTTA+AGG - chr7_4:48052572-48052591 Msa1158660:CDS 25.0%
!! TAAATTTTGGATTTACGTTC+TGG - chr7_4:48052699-48052718 Msa1158660:intron 25.0%
!! TTTTCCTTTTGCAATTAAAG+AGG - chr7_4:48052767-48052786 Msa1158660:intron 25.0%
!! TTTCCTTTTGCAATTAAAGA+GGG - chr7_4:48052768-48052787 Msa1158660:intron 25.0%
! AAATGATAAACATGATGATC+TGG - chr7_4:48052849-48052868 Msa1158660:intron 25.0%
! AATGATAAACATGATGATCT+GGG - chr7_4:48052850-48052869 Msa1158660:intron 25.0%
TGAGGCATAGATCTTAAATT+TGG - chr7_4:48050114-48050133 Msa1158660:three_prime_UTR 30.0%
CCCTTTATCTAAATCTATTG+TGG - chr7_4:48050199-48050218 Msa1158660:three_prime_UTR 30.0%
ATCAGAAGAAAGCTTAATTC+TGG - chr7_4:48050388-48050407 Msa1158660:three_prime_UTR 30.0%
AGATGAAGATGAAGATAAAG+AGG + chr7_4:48050538-48050557 None:intergenic 30.0%
! GTTCCTCTGAAAAAAAAAAC+TGG - chr7_4:48050568-48050587 Msa1158660:three_prime_UTR 30.0%
!! TGAAGTTGTTTTCATTTGGT+TGG - chr7_4:48050733-48050752 Msa1158660:three_prime_UTR 30.0%
!! GTTTTCATTTGGTTGGTTAA+TGG - chr7_4:48050740-48050759 Msa1158660:three_prime_UTR 30.0%
! TTTCATTTGGTTGGTTAATG+GGG - chr7_4:48050742-48050761 Msa1158660:three_prime_UTR 30.0%
TGAAGATAAGCATAAAAGAG+AGG - chr7_4:48050776-48050795 Msa1158660:three_prime_UTR 30.0%
GAAGATAAGCATAAAAGAGA+GGG - chr7_4:48050777-48050796 Msa1158660:three_prime_UTR 30.0%
ACTTGTATTCTGTTCTTTGA+TGG - chr7_4:48050916-48050935 Msa1158660:three_prime_UTR 30.0%
! TAAGCTTCTTTGGATGATTT+TGG + chr7_4:48051307-48051326 None:intergenic 30.0%
AATCATCCAAAGAAGCTTAT+TGG - chr7_4:48051308-48051327 Msa1158660:intron 30.0%
AACTTACCAATAAGCTTCTT+TGG + chr7_4:48051317-48051336 None:intergenic 30.0%
TCAAGAGAGATATGAAGTTA+GGG - chr7_4:48051496-48051515 Msa1158660:intron 30.0%
AAAAGTAACAAGAAGGTTAG+TGG - chr7_4:48051524-48051543 Msa1158660:intron 30.0%
TATGCAAATATTTGAGAGGT+TGG - chr7_4:48051704-48051723 Msa1158660:CDS 30.0%
!! TCTAAACTATTTTGGGAAGA+TGG - chr7_4:48051748-48051767 Msa1158660:CDS 30.0%
GAAACAAAACAAAACTTGGT+GGG + chr7_4:48052010-48052029 None:intergenic 30.0%
AGAAACAAAACAAAACTTGG+TGG + chr7_4:48052011-48052030 None:intergenic 30.0%
GAGAGAAACAAAACAAAACT+TGG + chr7_4:48052014-48052033 None:intergenic 30.0%
ACATTTCAGTTCTTCAATGT+CGG + chr7_4:48052191-48052210 None:intergenic 30.0%
GGGTATGAAAAAACCAATTA+AGG - chr7_4:48052280-48052299 Msa1158660:intron 30.0%
! AATTTCAACTGAAGAGTATG+AGG - chr7_4:48052357-48052376 Msa1158660:intron 30.0%
TATAAATTTAGACACCCACA+TGG + chr7_4:48052519-48052538 None:intergenic 30.0%
AATGGGATTGAACTCTTTAT+AGG + chr7_4:48052748-48052767 None:intergenic 30.0%
AAACCCTCTTTAATTGCAAA+AGG + chr7_4:48052774-48052793 None:intergenic 30.0%
CAATTAAAGAGGGTTTATTG+AGG - chr7_4:48052778-48052797 Msa1158660:intron 30.0%
! TTATTGAGGTTTCAGTTTTC+TGG - chr7_4:48052792-48052811 Msa1158660:intron 30.0%
ATTTCAAAATGGGAGAATCA+GGG + chr7_4:48052833-48052852 None:intergenic 30.0%
ATTGAATCTTTCAACTTTCG+CGG - chr7_4:48052985-48053004 Msa1158660:five_prime_UTR 30.0%
ATTGAATCTTTCAACTTTCC+CGG - chr7_4:48053058-48053077 Msa1158660:five_prime_UTR 30.0%
GGATTCAGAGAAGAAGAAAA+AGG + chr7_4:48049942-48049961 None:intergenic 35.0%
GAAGAAGATGAAGAAGAAGA+AGG + chr7_4:48049985-48050004 None:intergenic 35.0%
! AAGAAAGCTTAATTCTGGAG+TGG - chr7_4:48050393-48050412 Msa1158660:three_prime_UTR 35.0%
! CTGAGAAGATCCATTTGTTA+TGG + chr7_4:48050512-48050531 None:intergenic 35.0%
TCATCTTCATCTTCCTTGTT+TGG - chr7_4:48050546-48050565 Msa1158660:three_prime_UTR 35.0%
!! TTTTTCAGAGGAACCAAACA+AGG + chr7_4:48050562-48050581 None:intergenic 35.0%
!! TGATTGGAAGTTTTGTATGC+AGG - chr7_4:48051028-48051047 Msa1158660:three_prime_UTR 35.0%
GAGAAGAAAAAGCTCTTGTT+TGG - chr7_4:48051187-48051206 Msa1158660:CDS 35.0%
GAGAGAGTAATGTAAAGCTT+AGG + chr7_4:48051213-48051232 None:intergenic 35.0%
! GAAGATTTTCTTGCCATGAA+AGG - chr7_4:48051249-48051268 Msa1158660:intron 35.0%
!! ATGATTTTGGCCCTCTTTTT+GGG + chr7_4:48051294-48051313 None:intergenic 35.0%
ATGTTGTCCACATGTTTGTT+TGG - chr7_4:48051425-48051444 Msa1158660:intron 35.0%
ACAAACACCAAACAAACATG+TGG + chr7_4:48051435-48051454 None:intergenic 35.0%
!! GTTTGGTGTTTGTTTACAGT+TGG - chr7_4:48051442-48051461 Msa1158660:intron 35.0%
GTCAAGAGAGATATGAAGTT+AGG - chr7_4:48051495-48051514 Msa1158660:intron 35.0%
GGAGAAGAAAAGTAACAAGA+AGG - chr7_4:48051517-48051536 Msa1158660:intron 35.0%
!!! TTTTTGGGTTTTTGATGCAG+AGG - chr7_4:48051623-48051642 Msa1158660:intron 35.0%
! AAAACAAAACTTGGTGGGAA+TGG + chr7_4:48052005-48052024 None:intergenic 35.0%
GAAGAACTGAAATGTACCTT+TGG - chr7_4:48052196-48052215 Msa1158660:intron 35.0%
GTATGAGGCTAAATAAAGCA+TGG - chr7_4:48052372-48052391 Msa1158660:CDS 35.0%
! CTTTCTTCTAGTTAAGCACT+AGG - chr7_4:48052430-48052449 Msa1158660:CDS 35.0%
TAGACAAAGTAGCTTACATG+TGG - chr7_4:48052602-48052621 Msa1158660:intron 35.0%
CATTTCAAAATGGGAGAATC+AGG + chr7_4:48052834-48052853 None:intergenic 35.0%
AAATCTGCAGTCAAATCATC+TGG + chr7_4:48052880-48052899 None:intergenic 35.0%
ACCCAAATCCAAACAATTCA+TGG - chr7_4:48052914-48052933 Msa1158660:intron 35.0%
GCCATGAATTGTTTGGATTT+GGG + chr7_4:48052918-48052937 None:intergenic 35.0%
! AGTCTAAAGCAAGTTTGCAA+TGG + chr7_4:48052940-48052959 None:intergenic 35.0%
AATTTGTAGCGTATGTGTCA+CGG + chr7_4:48053041-48053060 None:intergenic 35.0%
!! GAAGCAACCCTTTAAGACTT+TGG - chr7_4:48050136-48050155 Msa1158660:three_prime_UTR 40.0%
TAGAAATGGAGACAGAAGAG+AGG - chr7_4:48050245-48050264 Msa1158660:three_prime_UTR 40.0%
! GAAGCGTTTGAGATGTGTAA+GGG - chr7_4:48050324-48050343 Msa1158660:three_prime_UTR 40.0%
AAGATCCTCGGATTTCAACT+AGG - chr7_4:48050350-48050369 Msa1158660:three_prime_UTR 40.0%
TTAAGCCTAGTTGAAATCCG+AGG + chr7_4:48050358-48050377 None:intergenic 40.0%
CGGATTTCAACTAGGCTTAA+CGG - chr7_4:48050358-48050377 Msa1158660:three_prime_UTR 40.0%
ATTTCAACTAGGCTTAACGG+TGG - chr7_4:48050361-48050380 Msa1158660:three_prime_UTR 40.0%
AACAACCTAATCGTCTCACA+AGG - chr7_4:48050473-48050492 Msa1158660:three_prime_UTR 40.0%
AACAACCTTGTGAGACGATT+AGG + chr7_4:48050481-48050500 None:intergenic 40.0%
TTTGTATGCAGGAATTCCGA+TGG - chr7_4:48051039-48051058 Msa1158660:three_prime_UTR 40.0%
!!! TGCCGATTTTCTGTTATCTC+CGG + chr7_4:48051085-48051104 None:intergenic 40.0%
TAACAGAAAATCGGCATCAC+CGG - chr7_4:48051089-48051108 Msa1158660:three_prime_UTR 40.0%
!! TAGTATCGATCTTCCTTCTC+CGG + chr7_4:48051111-48051130 None:intergenic 40.0%
AGGAAGCTTACAACCTTTCA+TGG + chr7_4:48051265-48051284 None:intergenic 40.0%
TTCCTCAAAGACCCAAAAAG+AGG - chr7_4:48051280-48051299 Msa1158660:intron 40.0%
TCCTCAAAGACCCAAAAAGA+GGG - chr7_4:48051281-48051300 Msa1158660:intron 40.0%
!! GATGATTTTGGCCCTCTTTT+TGG + chr7_4:48051295-48051314 None:intergenic 40.0%
!! TGTTTACAGTTGGTAAGTCC+TGG - chr7_4:48051452-48051471 Msa1158660:intron 40.0%
ACAAGAAGGTTAGTGGTTGT+TGG - chr7_4:48051531-48051550 Msa1158660:intron 40.0%
AGAGGGTTGCTGAAATATGA+AGG + chr7_4:48052065-48052084 None:intergenic 40.0%
! TTTTTGCAAAGGTGGGTCAT+AGG + chr7_4:48052163-48052182 None:intergenic 40.0%
GACCCACCTTTGCAAAAATT+TGG - chr7_4:48052165-48052184 Msa1158660:intron 40.0%
! GGCCAAATTTTTGCAAAGGT+GGG + chr7_4:48052170-48052189 None:intergenic 40.0%
! TGTCGGCCAAATTTTTGCAA+AGG + chr7_4:48052174-48052193 None:intergenic 40.0%
GATTAATGTAAGCCTCAAGC+AGG - chr7_4:48052321-48052340 Msa1158660:intron 40.0%
TGGATATATTTGCCTGCTTG+AGG + chr7_4:48052336-48052355 None:intergenic 40.0%
GCTAAATAAAGCATGGATCG+TGG - chr7_4:48052379-48052398 Msa1158660:CDS 40.0%
GGCCATGAATTGTTTGGATT+TGG + chr7_4:48052919-48052938 None:intergenic 40.0%
TGCAATGGCCATGAATTGTT+TGG + chr7_4:48052925-48052944 None:intergenic 40.0%
AATTTGTAGCTTCTGCCTCA+CGG + chr7_4:48052968-48052987 None:intergenic 40.0%
!! TCTAAAGCAAGTTTTCACCG+TGG + chr7_4:48053011-48053030 None:intergenic 40.0%
! GAGGAACCAAAGAGCATGTA+AGG - chr7_4:48050264-48050283 Msa1158660:three_prime_UTR 45.0%
CTGTTGCCTTACATGCTCTT+TGG + chr7_4:48050273-48050292 None:intergenic 45.0%
AACCAGAGTTCTTCTTGCAG+TGG - chr7_4:48050293-48050312 Msa1158660:three_prime_UTR 45.0%
ACCAGAGTTCTTCTTGCAGT+GGG - chr7_4:48050294-48050313 Msa1158660:three_prime_UTR 45.0%
!! GGAAGCGTTTGAGATGTGTA+AGG - chr7_4:48050323-48050342 Msa1158660:three_prime_UTR 45.0%
GTGTAAGGGTGAAAGATCCT+CGG - chr7_4:48050338-48050357 Msa1158660:three_prime_UTR 45.0%
CGGTCGTAGAATAGTTCCAT+CGG + chr7_4:48051058-48051077 None:intergenic 45.0%
CGATGGAACTATTCTACGAC+CGG - chr7_4:48051056-48051075 Msa1158660:three_prime_UTR 45.0%
GGCCGGAGATAACAGAAAAT+CGG - chr7_4:48051080-48051099 Msa1158660:three_prime_UTR 45.0%
AAGATCGATACTACACGACG+AGG - chr7_4:48051118-48051137 Msa1158660:three_prime_UTR 45.0%
AGATCGATACTACACGACGA+GGG - chr7_4:48051119-48051138 Msa1158660:three_prime_UTR 45.0%
AACATCGCAAGTGCCTTTAC+CGG + chr7_4:48051160-48051179 None:intergenic 45.0%
GGCACTTGCGATGTTATCAA+TGG - chr7_4:48051165-48051184 Msa1158660:exon 45.0%
ATATCAGTCAACCATGCTCC+AGG + chr7_4:48051473-48051492 None:intergenic 45.0%
! TTTTTGATGCAGAGGCCAAG+AGG - chr7_4:48051631-48051650 Msa1158660:intron 45.0%
CCAAGAGGATTGAAGGCTAT+GGG - chr7_4:48051646-48051665 Msa1158660:intron 45.0%
CAAGAGGATTGAAGGCTATG+GGG - chr7_4:48051647-48051666 Msa1158660:intron 45.0%
TTTGGGAAGATGGAAGATGC+TGG - chr7_4:48051758-48051777 Msa1158660:CDS 45.0%
! CGGCCAAATTTTTGCAAAGG+TGG + chr7_4:48052171-48052190 None:intergenic 45.0%
GCACTGAACTTAGACCATGT+GGG - chr7_4:48052502-48052521 Msa1158660:CDS 45.0%
ACTGCAGATTTCCTGACAGT+AGG - chr7_4:48052889-48052908 Msa1158660:five_prime_UTR 45.0%
CTGCAGATTTCCTGACAGTA+GGG - chr7_4:48052890-48052909 Msa1158660:five_prime_UTR 45.0%
!!! ATTTTTCTAAATATAATTTT+TGG - chr7_4:48051607-48051626 Msa1158660:intron 5.0%
!!! TTTTTCTAAATATAATTTTT+GGG - chr7_4:48051608-48051627 Msa1158660:intron 5.0%
CCAGAGTTCTTCTTGCAGTG+GGG - chr7_4:48050295-48050314 Msa1158660:three_prime_UTR 50.0%
TCTTCTTGCAGTGGGGAAAC+AGG - chr7_4:48050302-48050321 Msa1158660:three_prime_UTR 50.0%
GGAGTGGAGAATCATCGTTC+TGG - chr7_4:48050409-48050428 Msa1158660:three_prime_UTR 50.0%
TGGAACTATTCTACGACCGG+CGG - chr7_4:48051059-48051078 Msa1158660:three_prime_UTR 50.0%
AAAATCGGCATCACCGGAGA+AGG - chr7_4:48051095-48051114 Msa1158660:three_prime_UTR 50.0%
GATCGATACTACACGACGAG+GGG - chr7_4:48051120-48051139 Msa1158660:three_prime_UTR 50.0%
ATCGATACTACACGACGAGG+GGG - chr7_4:48051121-48051140 Msa1158660:three_prime_UTR 50.0%
!!! GCCCTCTTTTTGGGTCTTTG+AGG + chr7_4:48051285-48051304 None:intergenic 50.0%
!! AGTTGGTAAGTCCTGGAGCA+TGG - chr7_4:48051459-48051478 Msa1158660:intron 50.0%
GCCAAGAGGATTGAAGGCTA+TGG - chr7_4:48051645-48051664 Msa1158660:intron 50.0%
CCCATAGCCTTCAATCCTCT+TGG + chr7_4:48051649-48051668 None:intergenic 50.0%
ATTGAAGGCTATGGGGAGTG+TGG - chr7_4:48051654-48051673 Msa1158660:intron 50.0%
ACTGTGTGTGTGTGTGTGTG+TGG - chr7_4:48052480-48052499 Msa1158660:CDS 50.0%
! GGCACTGAACTTAGACCATG+TGG - chr7_4:48052501-48052520 Msa1158660:CDS 50.0%
! GATTTGGGTTCCCTACTGTC+AGG + chr7_4:48052903-48052922 None:intergenic 50.0%
TCTTTCAACTTTCGCGGCCA+CGG - chr7_4:48052991-48053010 Msa1158660:five_prime_UTR 50.0%
! GGTCGAAAGCAGTTTTTGCC+GGG + chr7_4:48053079-48053098 None:intergenic 50.0%
! CGGTCGAAAGCAGTTTTTGC+CGG + chr7_4:48053080-48053099 None:intergenic 50.0%
CCCCACTGCAAGAAGAACTC+TGG + chr7_4:48050298-48050317 None:intergenic 55.0%
TTTCTGTTATCTCCGGCCGC+CGG + chr7_4:48051078-48051097 None:intergenic 55.0%
TCAGCAGAGGACACCGGTAA+AGG - chr7_4:48051144-48051163 Msa1158660:three_prime_UTR 55.0%
GCAGAGGCCAAGAGGATTGA+AGG - chr7_4:48051639-48051658 Msa1158660:intron 55.0%
AGCGTATGTGTCACGGCTTG+CGG + chr7_4:48053034-48053053 None:intergenic 55.0%
ACTATTCTACGACCGGCGGC+CGG - chr7_4:48051063-48051082 Msa1158660:three_prime_UTR 60.0%
! GCTTTAGACTGCGAGCCGTG+AGG - chr7_4:48052950-48052969 Msa1158660:five_prime_UTR 60.0%
AGGGGGTCAGCAGAGGACAC+CGG - chr7_4:48051138-48051157 Msa1158660:three_prime_UTR 65.0%
CACGACGAGGGGGTCAGCAG+AGG - chr7_4:48051131-48051150 Msa1158660:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 48049765 48053099 48049765 ID=Msa1158660;Name=Msa1158660
chr7_4 mRNA 48049765 48053099 48049765 ID=Msa1158660-mRNA-1;Parent=Msa1158660;Name=Msa1158660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=266|0.83|0.85|1|0.5|0.42|7|1406|175
chr7_4 exon 48049765 48051221 48049765 ID=Msa1158660-mRNA-1:exon:12925;Parent=Msa1158660-mRNA-1
chr7_4 exon 48051326 48051403 48051326 ID=Msa1158660-mRNA-1:exon:12924;Parent=Msa1158660-mRNA-1
chr7_4 exon 48051661 48051814 48051661 ID=Msa1158660-mRNA-1:exon:12923;Parent=Msa1158660-mRNA-1
chr7_4 exon 48052370 48052616 48052370 ID=Msa1158660-mRNA-1:exon:12922;Parent=Msa1158660-mRNA-1
chr7_4 exon 48052707 48052778 48052707 ID=Msa1158660-mRNA-1:exon:12921;Parent=Msa1158660-mRNA-1
chr7_4 exon 48052888 48052929 48052888 ID=Msa1158660-mRNA-1:exon:12920;Parent=Msa1158660-mRNA-1
chr7_4 exon 48052950 48053099 48052950 ID=Msa1158660-mRNA-1:exon:12919;Parent=Msa1158660-mRNA-1
chr7_4 five_prime_UTR 48052950 48053099 48052950 ID=Msa1158660-mRNA-1:five_prime_utr;Parent=Msa1158660-mRNA-1
chr7_4 five_prime_UTR 48052888 48052929 48052888 ID=Msa1158660-mRNA-1:five_prime_utr;Parent=Msa1158660-mRNA-1
chr7_4 five_prime_UTR 48052707 48052778 48052707 ID=Msa1158660-mRNA-1:five_prime_utr;Parent=Msa1158660-mRNA-1
chr7_4 five_prime_UTR 48052615 48052616 48052615 ID=Msa1158660-mRNA-1:five_prime_utr;Parent=Msa1158660-mRNA-1
chr7_4 CDS 48052370 48052614 48052370 ID=Msa1158660-mRNA-1:cds;Parent=Msa1158660-mRNA-1
chr7_4 CDS 48051661 48051814 48051661 ID=Msa1158660-mRNA-1:cds;Parent=Msa1158660-mRNA-1
chr7_4 CDS 48051326 48051403 48051326 ID=Msa1158660-mRNA-1:cds;Parent=Msa1158660-mRNA-1
chr7_4 CDS 48051171 48051221 48051171 ID=Msa1158660-mRNA-1:cds;Parent=Msa1158660-mRNA-1
chr7_4 three_prime_UTR 48049765 48051170 48049765 ID=Msa1158660-mRNA-1:three_prime_utr;Parent=Msa1158660-mRNA-1
Gene Sequence

>Msa1158660

ATGGAGACAGAAGAGAGGAACCAAAGAGCATGTAAGGCAACAGAACCAGAGTTCTTCTTGCAGTGGGGAAACAGGAAGCGTTTGAGATGTGTAAGGGTGAAAGATCCTCGGATTTCAACTAGGCTTAACGGTGGTGTAATCAGAAGAAAGCTTAATTCTGGAGTGGAGAATCATCGTTCTGGTGTTACTGAGAAAGAAAGTTCTCATCTTCATCATCATCAACAACAACCTAATCGTCTCACAAGGAATTCCGATGGAACTATTCTACGACCGGCGGCCGGAGATAACAGAAAATCGGCATCACCGGAGAAGGAAGATCGATACTACACGACGAGGGGGTCAGCAGAGGACACCGGTAAAGGCACTTGCGATGTTATCAATGGAGAAGAAAAAGCTCTTTTGGTAAGTCCTGGAGCATGGTTGACTGATATGTGTCAAGAGAGATATGAAGTTAGGGAGAAGAAAAGTAACAAGAAGAGGCCAAGAGGATTGAAGGCTATGGGGAGTGTGGAAAGTGATTCTGAATGA

Protein sequence

>Msa1158660

METEERNQRACKATEPEFFLQWGNRKRLRCVRVKDPRISTRLNGGVIRRKLNSGVENHRSGVTEKESSHLHHHQQQPNRLTRNSDGTILRPAAGDNRKSASPEKEDRYYTTRGSAEDTGKGTCDVINGEEKALLVSPGAWLTDMCQERYEVREKKSNKKRPRGLKAMGSVESDSE*