AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0277310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0277310 MtrunA17_Chr2g0290501 82.243 107 19 0 11 117 227 333 1.38e-61 191
Msa0277310 MtrunA17_Chr4g0076351 63.889 108 38 1 11 117 170 277 2.40e-45 147
Msa0277310 MtrunA17_Chr8g0383231 53.535 99 43 2 11 108 174 270 3.41e-31 111
Msa0277310 MtrunA17_Chr3g0102431 50.962 104 51 0 11 114 181 284 1.43e-29 107
Msa0277310 MtrunA17_Chr3g0120821 40.000 100 58 1 11 110 236 333 2.66e-23 92.0
Msa0277310 MtrunA17_Chr4g0055811 42.424 99 57 0 11 109 248 346 5.81e-23 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0277310 AT5G47650.5 53.465 101 45 1 16 116 180 278 4.40e-33 116
Msa0277310 AT5G47650.3 53.465 101 45 1 16 116 180 278 4.40e-33 116
Msa0277310 AT5G47650.1 53.465 101 45 1 16 116 180 278 4.40e-33 116
Msa0277310 AT5G47650.2 53.465 101 45 1 16 116 227 325 1.51e-32 116
Msa0277310 AT5G47650.4 53.465 101 45 1 16 116 226 324 1.66e-32 116
Msa0277310 AT4G25434.13 47.059 102 53 1 17 117 116 217 7.65e-26 96.7
Msa0277310 AT4G25434.4 46.296 108 57 1 11 117 125 232 1.29e-25 96.3
Msa0277310 AT4G25434.3 46.296 108 57 1 11 117 130 237 1.45e-25 96.3
Msa0277310 AT4G25434.5 46.296 108 57 1 11 117 130 237 1.45e-25 96.3
Msa0277310 AT4G25434.10 46.296 108 57 1 11 117 175 282 2.81e-25 96.7
Msa0277310 AT4G25434.1 46.296 108 57 1 11 117 170 277 2.99e-25 96.3
Msa0277310 AT4G25434.2 47.059 102 53 1 17 117 203 304 4.50e-25 96.7
Msa0277310 AT4G25434.8 47.059 102 53 1 17 117 208 309 4.76e-25 96.7
Msa0277310 AT5G47240.1 43.000 100 57 0 10 109 252 351 2.09e-24 95.5
Msa0277310 AT4G12720.6 40.952 105 60 2 11 114 84 187 3.96e-22 86.7
Msa0277310 AT4G12720.2 40.952 105 60 2 11 114 167 270 2.37e-21 86.3
Msa0277310 AT4G12720.3 40.952 105 60 2 11 114 167 270 2.37e-21 86.3
Msa0277310 AT4G12720.1 40.952 105 60 2 11 114 167 270 2.37e-21 86.3
Msa0277310 AT4G12720.4 40.952 105 60 2 11 114 207 310 3.13e-21 86.7
Msa0277310 AT2G04450.1 40.196 102 58 3 11 110 167 267 4.84e-20 82.8
Msa0277310 AT2G04430.2 38.961 77 44 2 17 90 174 250 5.42e-13 63.9
Msa0277310 AT2G04430.1 38.961 77 44 2 17 90 193 269 7.64e-13 63.5

Find 49 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGTTGATTCAGAATTTC+TGG 0.172583 2_3:-9822846 Msa0277310:intron
TTGGCTAATATCATTGTCTA+TGG 0.196825 2_3:-9822710 Msa0277310:five_prime_UTR
ATATTATCAATGATTGAAAA+AGG 0.219751 2_3:-9822788 Msa0277310:five_prime_UTR
AAGGTGGATGGGCGATATTC+TGG 0.277699 2_3:-9821727 Msa0277310:CDS
ATTATTTCTTTAAAGTTTCC+TGG 0.291245 2_3:-9822626 Msa0277310:five_prime_UTR
TTCTGGAAGTATTAGCATTC+AGG 0.309877 2_3:-9822829 Msa0277310:five_prime_UTR
CATTTCATAACATATATGTT+TGG 0.350488 2_3:+9821276 None:intergenic
ATTTCATAACATATATGTTT+GGG 0.359299 2_3:+9821277 None:intergenic
GTATATGAACGATATTTGTT+TGG 0.375418 2_3:-9821752 Msa0277310:CDS
ACTTCAAAATATCAGTCTTT+CGG 0.393242 2_3:+9821773 None:intergenic
AAGTTTGATAATGTAGATAC+TGG 0.404746 2_3:+9821697 None:intergenic
AGTGCAGAGGTCAGAGATAG+AGG 0.417005 2_3:-9822459 Msa0277310:CDS
CTATCTCTGACCTCTGCACT+TGG 0.417708 2_3:+9822462 None:intergenic
GACTTCAAATTGGAGGTAGA+AGG 0.419826 2_3:-9822764 Msa0277310:five_prime_UTR
ATTTGTTTGGCTAAGGTGGA+TGG 0.435622 2_3:-9821739 Msa0277310:CDS
CATTGATTCACCATTTGTAC+TGG 0.438815 2_3:-9821500 Msa0277310:three_prime_UTR
TTGAAACCAATCAATTCATC+TGG 0.446101 2_3:+9821346 None:intergenic
CAAATTCAGTTTGTTAAACA+TGG 0.455001 2_3:-9821445 Msa0277310:three_prime_UTR
GAACGATATTTGTTTGGCTA+AGG 0.457645 2_3:-9821746 Msa0277310:CDS
AATAACAAAGCCAGTACAAA+TGG 0.460285 2_3:+9821490 None:intergenic
ATTCATTAAGTCAACAATGC+TGG 0.463994 2_3:-9821541 Msa0277310:three_prime_UTR
CACTTGGATCTCAGACGAAA+GGG 0.464839 2_3:+9822478 None:intergenic
AACATATATGTTTGGGATCA+CGG 0.469173 2_3:+9821284 None:intergenic
AGATGAATTGATTGGTTTCA+AGG 0.471503 2_3:-9821344 Msa0277310:three_prime_UTR
TAAATGCTTGACAAGAATCC+AGG 0.479466 2_3:+9822608 None:intergenic
CGATATTTGTTTGGCTAAGG+TGG 0.484268 2_3:-9821743 Msa0277310:CDS
GTCAGAGATAGAGGGTGCAC+AGG 0.487803 2_3:-9822450 Msa0277310:intron
AGTATGCCAGATGAATTGAT+TGG 0.488729 2_3:-9821352 Msa0277310:three_prime_UTR
AAATACCTTCAAAACTCAAA+AGG 0.493660 2_3:-9821612 Msa0277310:three_prime_UTR
TAAATCTGACTTCTCAAAGA+AGG 0.503504 2_3:+9822523 None:intergenic
TGAAAGAAGAAAAGAATGCT+TGG 0.506249 2_3:+9822580 None:intergenic
ACTGCAGTGGATGCCATTTG+TGG 0.515009 2_3:-9821818 Msa0277310:intron
ATATCAGTCTTTCGGACGAA+TGG 0.516968 2_3:+9821781 None:intergenic
TGGCTAATATCATTGTCTAT+GGG 0.526402 2_3:-9822709 Msa0277310:five_prime_UTR
TATGGGAGAATGTGTGTCCT+TGG 0.529367 2_3:-9822692 Msa0277310:five_prime_UTR
AGAGAGGTCAAAGAAGAGAC+AGG 0.538041 2_3:-9822964 Msa0277310:five_prime_UTR
TGAGACGCGTATTCCACAAA+TGG 0.538269 2_3:+9821805 None:intergenic
TATTCTTTATGTGTATGTTG+CGG 0.538500 2_3:-9822502 Msa0277310:CDS
TTTGTTTGGCTAAGGTGGAT+GGG 0.543534 2_3:-9821738 Msa0277310:CDS
AAAAGGGGACTTCAAATTGG+AGG 0.545579 2_3:-9822771 Msa0277310:five_prime_UTR
TGAATGCTGAAGCATTGAAA+AGG 0.552854 2_3:-9821648 Msa0277310:CDS
AACAGTCAATAAAGTATACA+TGG 0.559778 2_3:-9821408 Msa0277310:three_prime_UTR
AGAAATAAACAAATGTTCCA+AGG 0.569125 2_3:+9822675 None:intergenic
GCACTTGGATCTCAGACGAA+AGG 0.574989 2_3:+9822477 None:intergenic
GTGCAGAGGTCAGAGATAGA+GGG 0.598275 2_3:-9822458 Msa0277310:CDS
TTATTTGAAAGCAATTGTAG+TGG 0.618922 2_3:-9821472 Msa0277310:three_prime_UTR
CAACAATGCTGGTCTTGATG+AGG 0.636828 2_3:-9821530 Msa0277310:three_prime_UTR
ACTTGGATCTCAGACGAAAG+GGG 0.640184 2_3:+9822479 None:intergenic
CGTCTGAGATCCAAGTGCAG+AGG 0.669999 2_3:-9822472 Msa0277310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATCAATGATTGAAAA+AGG - chr2_3:9821452-9821471 Msa0277310:three_prime_UTR 15.0%
!! TATTATCAATGATTGAAAAA+GGG - chr2_3:9821453-9821472 Msa0277310:three_prime_UTR 15.0%
!!! TTTAAAATGTTCAATACTTA+TGG - chr2_3:9821860-9821879 Msa0277310:intron 15.0%
!! ATTTCATAACATATATGTTT+GGG + chr2_3:9822966-9822985 None:intergenic 15.0%
!! ATATTATCAATGATTGAAAA+AGG - chr2_3:9821452-9821471 Msa0277310:three_prime_UTR 15.0%
!! TATTATCAATGATTGAAAAA+GGG - chr2_3:9821453-9821472 Msa0277310:three_prime_UTR 15.0%
!!! TTTAAAATGTTCAATACTTA+TGG - chr2_3:9821860-9821879 Msa0277310:intron 15.0%
!! ATTTCATAACATATATGTTT+GGG + chr2_3:9822966-9822985 None:intergenic 15.0%
!! ATTATCAATGATTGAAAAAG+GGG - chr2_3:9821454-9821473 Msa0277310:three_prime_UTR 20.0%
!! ATGATATTAGCCAAAAAAAA+TGG + chr2_3:9821524-9821543 None:intergenic 20.0%
!!! ATTATTTCTTTAAAGTTTCC+TGG - chr2_3:9821614-9821633 Msa0277310:three_prime_UTR 20.0%
!!! ATGATATCATTTTAGGTTTT+AGG + chr2_3:9822149-9822168 None:intergenic 20.0%
!!! TAATGCTATGATATCATTTT+AGG + chr2_3:9822156-9822175 None:intergenic 20.0%
!! CATTTCATAACATATATGTT+TGG + chr2_3:9822967-9822986 None:intergenic 20.0%
!! ATTATCAATGATTGAAAAAG+GGG - chr2_3:9821454-9821473 Msa0277310:three_prime_UTR 20.0%
!! ATGATATTAGCCAAAAAAAA+TGG + chr2_3:9821524-9821543 None:intergenic 20.0%
!!! ATTATTTCTTTAAAGTTTCC+TGG - chr2_3:9821614-9821633 Msa0277310:three_prime_UTR 20.0%
!!! ATGATATCATTTTAGGTTTT+AGG + chr2_3:9822149-9822168 None:intergenic 20.0%
!!! TAATGCTATGATATCATTTT+AGG + chr2_3:9822156-9822175 None:intergenic 20.0%
!! CATTTCATAACATATATGTT+TGG + chr2_3:9822967-9822986 None:intergenic 20.0%
!!! CTTGGTTCTTTCAATTTTAT+AGG - chr2_3:9821376-9821395 Msa0277310:three_prime_UTR 25.0%
!!! ATTGACATGTCCATTTTTTT+TGG - chr2_3:9821511-9821530 Msa0277310:three_prime_UTR 25.0%
! AGAAATAAACAAATGTTCCA+AGG + chr2_3:9821568-9821587 None:intergenic 25.0%
! TATTCTTTATGTGTATGTTG+CGG - chr2_3:9821738-9821757 Msa0277310:CDS 25.0%
! TAGAAGAAAACATAAAGTGA+TGG + chr2_3:9821929-9821948 None:intergenic 25.0%
! TCTATCTTAAGTCCATTATT+GGG - chr2_3:9821975-9821994 Msa0277310:intron 25.0%
! TAGTATTTACGTGTTTAGTT+AGG - chr2_3:9822269-9822288 Msa0277310:intron 25.0%
! ACTTCAAAATATCAGTCTTT+CGG + chr2_3:9822470-9822489 None:intergenic 25.0%
! GTATATGAACGATATTTGTT+TGG - chr2_3:9822488-9822507 Msa0277310:CDS 25.0%
!!! AAGTTTGATAATGTAGATAC+TGG + chr2_3:9822546-9822565 None:intergenic 25.0%
! AAATACCTTCAAAACTCAAA+AGG - chr2_3:9822628-9822647 Msa0277310:five_prime_UTR 25.0%
!!! TATAACCTTTTGAGTTTTGA+AGG + chr2_3:9822636-9822655 None:intergenic 25.0%
! TTATTTGAAAGCAATTGTAG+TGG - chr2_3:9822768-9822787 Msa0277310:five_prime_UTR 25.0%
!!! CAAATTCAGTTTGTTAAACA+TGG - chr2_3:9822795-9822814 Msa0277310:five_prime_UTR 25.0%
! AACAGTCAATAAAGTATACA+TGG - chr2_3:9822832-9822851 Msa0277310:five_prime_UTR 25.0%
!!! CTTGGTTCTTTCAATTTTAT+AGG - chr2_3:9821376-9821395 Msa0277310:three_prime_UTR 25.0%
!!! ATTGACATGTCCATTTTTTT+TGG - chr2_3:9821511-9821530 Msa0277310:three_prime_UTR 25.0%
! AGAAATAAACAAATGTTCCA+AGG + chr2_3:9821568-9821587 None:intergenic 25.0%
! TATTCTTTATGTGTATGTTG+CGG - chr2_3:9821738-9821757 Msa0277310:CDS 25.0%
! TAGAAGAAAACATAAAGTGA+TGG + chr2_3:9821929-9821948 None:intergenic 25.0%
! TCTATCTTAAGTCCATTATT+GGG - chr2_3:9821975-9821994 Msa0277310:intron 25.0%
! TAGTATTTACGTGTTTAGTT+AGG - chr2_3:9822269-9822288 Msa0277310:intron 25.0%
! ACTTCAAAATATCAGTCTTT+CGG + chr2_3:9822470-9822489 None:intergenic 25.0%
! GTATATGAACGATATTTGTT+TGG - chr2_3:9822488-9822507 Msa0277310:CDS 25.0%
!!! AAGTTTGATAATGTAGATAC+TGG + chr2_3:9822546-9822565 None:intergenic 25.0%
! AAATACCTTCAAAACTCAAA+AGG - chr2_3:9822628-9822647 Msa0277310:five_prime_UTR 25.0%
!!! TATAACCTTTTGAGTTTTGA+AGG + chr2_3:9822636-9822655 None:intergenic 25.0%
! TTATTTGAAAGCAATTGTAG+TGG - chr2_3:9822768-9822787 Msa0277310:five_prime_UTR 25.0%
!!! CAAATTCAGTTTGTTAAACA+TGG - chr2_3:9822795-9822814 Msa0277310:five_prime_UTR 25.0%
! AACAGTCAATAAAGTATACA+TGG - chr2_3:9822832-9822851 Msa0277310:five_prime_UTR 25.0%
!! ATAGGTTGATTCAGAATTTC+TGG - chr2_3:9821394-9821413 Msa0277310:three_prime_UTR 30.0%
TTGGCTAATATCATTGTCTA+TGG - chr2_3:9821530-9821549 Msa0277310:three_prime_UTR 30.0%
TGGCTAATATCATTGTCTAT+GGG - chr2_3:9821531-9821550 Msa0277310:three_prime_UTR 30.0%
TGAAAGAAGAAAAGAATGCT+TGG + chr2_3:9821663-9821682 None:intergenic 30.0%
TAAATCTGACTTCTCAAAGA+AGG + chr2_3:9821720-9821739 None:intergenic 30.0%
GGTAAGTTAGTTATAGTTCA+AGG - chr2_3:9821811-9821830 Msa0277310:CDS 30.0%
TTCAAACTAAGCAATGTTTC+TGG - chr2_3:9821835-9821854 Msa0277310:intron 30.0%
TGAAGGAAAGAGAAAGAAAA+TGG + chr2_3:9821901-9821920 None:intergenic 30.0%
ATAAAGTGATGGCTTAATGA+AGG + chr2_3:9821918-9821937 None:intergenic 30.0%
GTCTATCTTAAGTCCATTAT+TGG - chr2_3:9821974-9821993 Msa0277310:intron 30.0%
! ACACGTAAATACTAGCTTAA+GGG + chr2_3:9822263-9822282 None:intergenic 30.0%
! AACACGTAAATACTAGCTTA+AGG + chr2_3:9822264-9822283 None:intergenic 30.0%
!!! GAAGGTATTTTTCAAGAGTT+GGG + chr2_3:9822618-9822637 None:intergenic 30.0%
!!! TGAAGGTATTTTTCAAGAGT+TGG + chr2_3:9822619-9822638 None:intergenic 30.0%
ATTCATTAAGTCAACAATGC+TGG - chr2_3:9822699-9822718 Msa0277310:five_prime_UTR 30.0%
AATAACAAAGCCAGTACAAA+TGG + chr2_3:9822753-9822772 None:intergenic 30.0%
TTGAAACCAATCAATTCATC+TGG + chr2_3:9822897-9822916 None:intergenic 30.0%
!! AGATGAATTGATTGGTTTCA+AGG - chr2_3:9822896-9822915 Msa0277310:intron 30.0%
! AACATATATGTTTGGGATCA+CGG + chr2_3:9822959-9822978 None:intergenic 30.0%
!! ATAGGTTGATTCAGAATTTC+TGG - chr2_3:9821394-9821413 Msa0277310:three_prime_UTR 30.0%
TTGGCTAATATCATTGTCTA+TGG - chr2_3:9821530-9821549 Msa0277310:three_prime_UTR 30.0%
TGGCTAATATCATTGTCTAT+GGG - chr2_3:9821531-9821550 Msa0277310:three_prime_UTR 30.0%
TGAAAGAAGAAAAGAATGCT+TGG + chr2_3:9821663-9821682 None:intergenic 30.0%
TAAATCTGACTTCTCAAAGA+AGG + chr2_3:9821720-9821739 None:intergenic 30.0%
GGTAAGTTAGTTATAGTTCA+AGG - chr2_3:9821811-9821830 Msa0277310:CDS 30.0%
TTCAAACTAAGCAATGTTTC+TGG - chr2_3:9821835-9821854 Msa0277310:intron 30.0%
TGAAGGAAAGAGAAAGAAAA+TGG + chr2_3:9821901-9821920 None:intergenic 30.0%
ATAAAGTGATGGCTTAATGA+AGG + chr2_3:9821918-9821937 None:intergenic 30.0%
GTCTATCTTAAGTCCATTAT+TGG - chr2_3:9821974-9821993 Msa0277310:intron 30.0%
! ACACGTAAATACTAGCTTAA+GGG + chr2_3:9822263-9822282 None:intergenic 30.0%
! AACACGTAAATACTAGCTTA+AGG + chr2_3:9822264-9822283 None:intergenic 30.0%
!!! GAAGGTATTTTTCAAGAGTT+GGG + chr2_3:9822618-9822637 None:intergenic 30.0%
!!! TGAAGGTATTTTTCAAGAGT+TGG + chr2_3:9822619-9822638 None:intergenic 30.0%
ATTCATTAAGTCAACAATGC+TGG - chr2_3:9822699-9822718 Msa0277310:five_prime_UTR 30.0%
AATAACAAAGCCAGTACAAA+TGG + chr2_3:9822753-9822772 None:intergenic 30.0%
TTGAAACCAATCAATTCATC+TGG + chr2_3:9822897-9822916 None:intergenic 30.0%
!! AGATGAATTGATTGGTTTCA+AGG - chr2_3:9822896-9822915 Msa0277310:intron 30.0%
! AACATATATGTTTGGGATCA+CGG + chr2_3:9822959-9822978 None:intergenic 30.0%
AAGAACCAAGAGTTAAATGC+CGG + chr2_3:9821366-9821385 None:intergenic 35.0%
!! TTCTGGAAGTATTAGCATTC+AGG - chr2_3:9821411-9821430 Msa0277310:three_prime_UTR 35.0%
TGAAAAAGGGGACTTCAAAT+TGG - chr2_3:9821466-9821485 Msa0277310:three_prime_UTR 35.0%
TAAATGCTTGACAAGAATCC+AGG + chr2_3:9821635-9821654 None:intergenic 35.0%
! CACGTAAATACTAGCTTAAG+GGG + chr2_3:9822262-9822281 None:intergenic 35.0%
TTTACGTGTTTAGTTAGGCA+CGG - chr2_3:9822274-9822293 Msa0277310:intron 35.0%
AGTATGCACGTAGTAAAAGT+TGG + chr2_3:9822301-9822320 None:intergenic 35.0%
! TTTTACTACGTGCATACTGA+AGG - chr2_3:9822303-9822322 Msa0277310:intron 35.0%
! TGAGAGTATACTGTACCTTA+GGG - chr2_3:9822372-9822391 Msa0277310:intron 35.0%
GAAGAATTGATATCTCCCTA+AGG + chr2_3:9822390-9822409 None:intergenic 35.0%
CATATTCTTCTTTACTGCAG+TGG - chr2_3:9822409-9822428 Msa0277310:intron 35.0%
GAACGATATTTGTTTGGCTA+AGG - chr2_3:9822494-9822513 Msa0277310:CDS 35.0%
!! TGAATGCTGAAGCATTGAAA+AGG - chr2_3:9822592-9822611 Msa0277310:exon 35.0%
!! CATTGATTCACCATTTGTAC+TGG - chr2_3:9822740-9822759 Msa0277310:five_prime_UTR 35.0%
!!! GTATACATGGCCATTTTTGT+CGG - chr2_3:9822845-9822864 Msa0277310:five_prime_UTR 35.0%
AGTATGCCAGATGAATTGAT+TGG - chr2_3:9822888-9822907 Msa0277310:intron 35.0%
AAGAACCAAGAGTTAAATGC+CGG + chr2_3:9821366-9821385 None:intergenic 35.0%
!! TTCTGGAAGTATTAGCATTC+AGG - chr2_3:9821411-9821430 Msa0277310:three_prime_UTR 35.0%
TGAAAAAGGGGACTTCAAAT+TGG - chr2_3:9821466-9821485 Msa0277310:three_prime_UTR 35.0%
TAAATGCTTGACAAGAATCC+AGG + chr2_3:9821635-9821654 None:intergenic 35.0%
! CACGTAAATACTAGCTTAAG+GGG + chr2_3:9822262-9822281 None:intergenic 35.0%
TTTACGTGTTTAGTTAGGCA+CGG - chr2_3:9822274-9822293 Msa0277310:intron 35.0%
AGTATGCACGTAGTAAAAGT+TGG + chr2_3:9822301-9822320 None:intergenic 35.0%
! TTTTACTACGTGCATACTGA+AGG - chr2_3:9822303-9822322 Msa0277310:intron 35.0%
! TGAGAGTATACTGTACCTTA+GGG - chr2_3:9822372-9822391 Msa0277310:intron 35.0%
GAAGAATTGATATCTCCCTA+AGG + chr2_3:9822390-9822409 None:intergenic 35.0%
CATATTCTTCTTTACTGCAG+TGG - chr2_3:9822409-9822428 Msa0277310:intron 35.0%
GAACGATATTTGTTTGGCTA+AGG - chr2_3:9822494-9822513 Msa0277310:CDS 35.0%
!! TGAATGCTGAAGCATTGAAA+AGG - chr2_3:9822592-9822611 Msa0277310:exon 35.0%
!! CATTGATTCACCATTTGTAC+TGG - chr2_3:9822740-9822759 Msa0277310:five_prime_UTR 35.0%
!!! GTATACATGGCCATTTTTGT+CGG - chr2_3:9822845-9822864 Msa0277310:five_prime_UTR 35.0%
AGTATGCCAGATGAATTGAT+TGG - chr2_3:9822888-9822907 Msa0277310:intron 35.0%
CGATGCTGTACAATTACCTT+CGG - chr2_3:9821311-9821330 Msa0277310:three_prime_UTR 40.0%
GATGCTGTACAATTACCTTC+GGG - chr2_3:9821312-9821331 Msa0277310:three_prime_UTR 40.0%
TAGACGAACTGGAATCTACA+TGG + chr2_3:9821343-9821362 None:intergenic 40.0%
AAAAGGGGACTTCAAATTGG+AGG - chr2_3:9821469-9821488 Msa0277310:three_prime_UTR 40.0%
GACTTCAAATTGGAGGTAGA+AGG - chr2_3:9821476-9821495 Msa0277310:three_prime_UTR 40.0%
GTAAGGTGAAGATTGCCTAA+GGG + chr2_3:9822104-9822123 None:intergenic 40.0%
TGTAAGGTGAAGATTGCCTA+AGG + chr2_3:9822105-9822124 None:intergenic 40.0%
GCAATCTTCACCTTACAAGT+CGG - chr2_3:9822108-9822127 Msa0277310:intron 40.0%
!! TTCCATGAAACCGACTTGTA+AGG + chr2_3:9822121-9822140 None:intergenic 40.0%
! CAAGTCGGTTTCATGGAATT+AGG - chr2_3:9822123-9822142 Msa0277310:intron 40.0%
! CTTGAAAGGAGAGTTGACTT+AGG - chr2_3:9822204-9822223 Msa0277310:intron 40.0%
TTACGTGTTTAGTTAGGCAC+GGG - chr2_3:9822275-9822294 Msa0277310:intron 40.0%
! CTGAGAGTATACTGTACCTT+AGG - chr2_3:9822371-9822390 Msa0277310:intron 40.0%
ATATCAGTCTTTCGGACGAA+TGG + chr2_3:9822462-9822481 None:intergenic 40.0%
CGATATTTGTTTGGCTAAGG+TGG - chr2_3:9822497-9822516 Msa0277310:CDS 40.0%
ATTTGTTTGGCTAAGGTGGA+TGG - chr2_3:9822501-9822520 Msa0277310:CDS 40.0%
TTTGTTTGGCTAAGGTGGAT+GGG - chr2_3:9822502-9822521 Msa0277310:CDS 40.0%
CGATGCTGTACAATTACCTT+CGG - chr2_3:9821311-9821330 Msa0277310:three_prime_UTR 40.0%
GATGCTGTACAATTACCTTC+GGG - chr2_3:9821312-9821331 Msa0277310:three_prime_UTR 40.0%
TAGACGAACTGGAATCTACA+TGG + chr2_3:9821343-9821362 None:intergenic 40.0%
AAAAGGGGACTTCAAATTGG+AGG - chr2_3:9821469-9821488 Msa0277310:three_prime_UTR 40.0%
GACTTCAAATTGGAGGTAGA+AGG - chr2_3:9821476-9821495 Msa0277310:three_prime_UTR 40.0%
GTAAGGTGAAGATTGCCTAA+GGG + chr2_3:9822104-9822123 None:intergenic 40.0%
TGTAAGGTGAAGATTGCCTA+AGG + chr2_3:9822105-9822124 None:intergenic 40.0%
GCAATCTTCACCTTACAAGT+CGG - chr2_3:9822108-9822127 Msa0277310:intron 40.0%
!! TTCCATGAAACCGACTTGTA+AGG + chr2_3:9822121-9822140 None:intergenic 40.0%
! CAAGTCGGTTTCATGGAATT+AGG - chr2_3:9822123-9822142 Msa0277310:intron 40.0%
! CTTGAAAGGAGAGTTGACTT+AGG - chr2_3:9822204-9822223 Msa0277310:intron 40.0%
TTACGTGTTTAGTTAGGCAC+GGG - chr2_3:9822275-9822294 Msa0277310:intron 40.0%
! CTGAGAGTATACTGTACCTT+AGG - chr2_3:9822371-9822390 Msa0277310:intron 40.0%
ATATCAGTCTTTCGGACGAA+TGG + chr2_3:9822462-9822481 None:intergenic 40.0%
CGATATTTGTTTGGCTAAGG+TGG - chr2_3:9822497-9822516 Msa0277310:CDS 40.0%
ATTTGTTTGGCTAAGGTGGA+TGG - chr2_3:9822501-9822520 Msa0277310:CDS 40.0%
TTTGTTTGGCTAAGGTGGAT+GGG - chr2_3:9822502-9822521 Msa0277310:CDS 40.0%
AGAGAGGTCAAAGAAGAGAC+AGG - chr2_3:9821276-9821295 Msa0277310:three_prime_UTR 45.0%
GTAGATTCCAGTTCGTCTAC+CGG - chr2_3:9821344-9821363 Msa0277310:three_prime_UTR 45.0%
TTAAATGCCGGTAGACGAAC+TGG + chr2_3:9821354-9821373 None:intergenic 45.0%
GTCTACCGGCATTTAACTCT+TGG - chr2_3:9821358-9821377 Msa0277310:three_prime_UTR 45.0%
TATGGGAGAATGTGTGTCCT+TGG - chr2_3:9821548-9821567 Msa0277310:three_prime_UTR 45.0%
ACTTGGATCTCAGACGAAAG+GGG + chr2_3:9821764-9821783 None:intergenic 45.0%
CACTTGGATCTCAGACGAAA+GGG + chr2_3:9821765-9821784 None:intergenic 45.0%
! AGCATTGGATGGCCCAATAA+TGG + chr2_3:9821990-9822009 None:intergenic 45.0%
TATTGGGCCATCCAATGCTT+AGG - chr2_3:9821991-9822010 Msa0277310:intron 45.0%
ATTGGGCCATCCAATGCTTA+GGG - chr2_3:9821992-9822011 Msa0277310:intron 45.0%
!! AACAGACCCTAAGCATTGGA+TGG + chr2_3:9822001-9822020 None:intergenic 45.0%
TCCAATGCTTAGGGTCTGTT+TGG - chr2_3:9822001-9822020 Msa0277310:intron 45.0%
CCAATGCTTAGGGTCTGTTT+GGG - chr2_3:9822002-9822021 Msa0277310:intron 45.0%
TAGGGTCTGTTTGGGAGTTT+AGG - chr2_3:9822010-9822029 Msa0277310:intron 45.0%
GTCTGTTTGGGAGTTTAGGA+GGG - chr2_3:9822014-9822033 Msa0277310:intron 45.0%
TCTGTTTGGGAGTTTAGGAG+GGG - chr2_3:9822015-9822034 Msa0277310:intron 45.0%
TCCTCTCCAAACTCTCAAAC+AGG - chr2_3:9822078-9822097 Msa0277310:intron 45.0%
TAAGGGCCTGTTTGAGAGTT+TGG + chr2_3:9822087-9822106 None:intergenic 45.0%
AAACTCTCAAACAGGCCCTT+AGG - chr2_3:9822086-9822105 Msa0277310:intron 45.0%
! CACCTTACAAGTCGGTTTCA+TGG - chr2_3:9822116-9822135 Msa0277310:intron 45.0%
TATCCAGTCTCGAGCTTGAA+AGG - chr2_3:9822190-9822209 Msa0277310:intron 45.0%
! AGGAGAGTTGACTTAGGCAT+TGG - chr2_3:9822210-9822229 Msa0277310:intron 45.0%
TGAGACGCGTATTCCACAAA+TGG + chr2_3:9822438-9822457 None:intergenic 45.0%
!! CAACAATGCTGGTCTTGATG+AGG - chr2_3:9822710-9822729 Msa0277310:five_prime_UTR 45.0%
CAGTCAGCTACCGACAAAAA+TGG + chr2_3:9822858-9822877 None:intergenic 45.0%
AGAGAGGTCAAAGAAGAGAC+AGG - chr2_3:9821276-9821295 Msa0277310:three_prime_UTR 45.0%
GTAGATTCCAGTTCGTCTAC+CGG - chr2_3:9821344-9821363 Msa0277310:three_prime_UTR 45.0%
TTAAATGCCGGTAGACGAAC+TGG + chr2_3:9821354-9821373 None:intergenic 45.0%
GTCTACCGGCATTTAACTCT+TGG - chr2_3:9821358-9821377 Msa0277310:three_prime_UTR 45.0%
TATGGGAGAATGTGTGTCCT+TGG - chr2_3:9821548-9821567 Msa0277310:three_prime_UTR 45.0%
ACTTGGATCTCAGACGAAAG+GGG + chr2_3:9821764-9821783 None:intergenic 45.0%
CACTTGGATCTCAGACGAAA+GGG + chr2_3:9821765-9821784 None:intergenic 45.0%
! AGCATTGGATGGCCCAATAA+TGG + chr2_3:9821990-9822009 None:intergenic 45.0%
TATTGGGCCATCCAATGCTT+AGG - chr2_3:9821991-9822010 Msa0277310:intron 45.0%
ATTGGGCCATCCAATGCTTA+GGG - chr2_3:9821992-9822011 Msa0277310:intron 45.0%
!! AACAGACCCTAAGCATTGGA+TGG + chr2_3:9822001-9822020 None:intergenic 45.0%
TCCAATGCTTAGGGTCTGTT+TGG - chr2_3:9822001-9822020 Msa0277310:intron 45.0%
CCAATGCTTAGGGTCTGTTT+GGG - chr2_3:9822002-9822021 Msa0277310:intron 45.0%
TAGGGTCTGTTTGGGAGTTT+AGG - chr2_3:9822010-9822029 Msa0277310:intron 45.0%
GTCTGTTTGGGAGTTTAGGA+GGG - chr2_3:9822014-9822033 Msa0277310:intron 45.0%
TCTGTTTGGGAGTTTAGGAG+GGG - chr2_3:9822015-9822034 Msa0277310:intron 45.0%
TCCTCTCCAAACTCTCAAAC+AGG - chr2_3:9822078-9822097 Msa0277310:intron 45.0%
TAAGGGCCTGTTTGAGAGTT+TGG + chr2_3:9822087-9822106 None:intergenic 45.0%
AAACTCTCAAACAGGCCCTT+AGG - chr2_3:9822086-9822105 Msa0277310:intron 45.0%
! CACCTTACAAGTCGGTTTCA+TGG - chr2_3:9822116-9822135 Msa0277310:intron 45.0%
TATCCAGTCTCGAGCTTGAA+AGG - chr2_3:9822190-9822209 Msa0277310:intron 45.0%
! AGGAGAGTTGACTTAGGCAT+TGG - chr2_3:9822210-9822229 Msa0277310:intron 45.0%
TGAGACGCGTATTCCACAAA+TGG + chr2_3:9822438-9822457 None:intergenic 45.0%
!! CAACAATGCTGGTCTTGATG+AGG - chr2_3:9822710-9822729 Msa0277310:five_prime_UTR 45.0%
CAGTCAGCTACCGACAAAAA+TGG + chr2_3:9822858-9822877 None:intergenic 45.0%
!! ATCTACATGGACTAGCCCGA+AGG + chr2_3:9821330-9821349 None:intergenic 50.0%
GCACTTGGATCTCAGACGAA+AGG + chr2_3:9821766-9821785 None:intergenic 50.0%
CTATCTCTGACCTCTGCACT+TGG + chr2_3:9821781-9821800 None:intergenic 50.0%
AGTGCAGAGGTCAGAGATAG+AGG - chr2_3:9821781-9821800 Msa0277310:CDS 50.0%
GTGCAGAGGTCAGAGATAGA+GGG - chr2_3:9821782-9821801 Msa0277310:CDS 50.0%
CCCAAACAGACCCTAAGCAT+TGG + chr2_3:9822005-9822024 None:intergenic 50.0%
GGTCTGTTTGGGAGTTTAGG+AGG - chr2_3:9822013-9822032 Msa0277310:intron 50.0%
GAGTTTAGGAGGGGAGAAGA+GGG - chr2_3:9822024-9822043 Msa0277310:intron 50.0%
GCCTGTTTGAGAGTTTGGAG+AGG + chr2_3:9822082-9822101 None:intergenic 50.0%
TCTCCTTTCAAGCTCGAGAC+TGG + chr2_3:9822196-9822215 None:intergenic 50.0%
! ACTGCAGTGGATGCCATTTG+TGG - chr2_3:9822422-9822441 Msa0277310:intron 50.0%
AAGGTGGATGGGCGATATTC+TGG - chr2_3:9822513-9822532 Msa0277310:CDS 50.0%
!! ATCTACATGGACTAGCCCGA+AGG + chr2_3:9821330-9821349 None:intergenic 50.0%
GCACTTGGATCTCAGACGAA+AGG + chr2_3:9821766-9821785 None:intergenic 50.0%
CTATCTCTGACCTCTGCACT+TGG + chr2_3:9821781-9821800 None:intergenic 50.0%
AGTGCAGAGGTCAGAGATAG+AGG - chr2_3:9821781-9821800 Msa0277310:CDS 50.0%
GTGCAGAGGTCAGAGATAGA+GGG - chr2_3:9821782-9821801 Msa0277310:CDS 50.0%
CCCAAACAGACCCTAAGCAT+TGG + chr2_3:9822005-9822024 None:intergenic 50.0%
GGTCTGTTTGGGAGTTTAGG+AGG - chr2_3:9822013-9822032 Msa0277310:intron 50.0%
GAGTTTAGGAGGGGAGAAGA+GGG - chr2_3:9822024-9822043 Msa0277310:intron 50.0%
GCCTGTTTGAGAGTTTGGAG+AGG + chr2_3:9822082-9822101 None:intergenic 50.0%
TCTCCTTTCAAGCTCGAGAC+TGG + chr2_3:9822196-9822215 None:intergenic 50.0%
! ACTGCAGTGGATGCCATTTG+TGG - chr2_3:9822422-9822441 Msa0277310:intron 50.0%
AAGGTGGATGGGCGATATTC+TGG - chr2_3:9822513-9822532 Msa0277310:CDS 50.0%
! CGTCTGAGATCCAAGTGCAG+AGG - chr2_3:9821768-9821787 Msa0277310:CDS 55.0%
! GTCAGAGATAGAGGGTGCAC+AGG - chr2_3:9821790-9821809 Msa0277310:CDS 55.0%
GGAGTTTAGGAGGGGAGAAG+AGG - chr2_3:9822023-9822042 Msa0277310:intron 55.0%
GAGAGTTTGGAGAGGAGCGA+GGG + chr2_3:9822074-9822093 None:intergenic 55.0%
TGAGAGTTTGGAGAGGAGCG+AGG + chr2_3:9822075-9822094 None:intergenic 55.0%
! CGTCTGAGATCCAAGTGCAG+AGG - chr2_3:9821768-9821787 Msa0277310:CDS 55.0%
! GTCAGAGATAGAGGGTGCAC+AGG - chr2_3:9821790-9821809 Msa0277310:CDS 55.0%
GGAGTTTAGGAGGGGAGAAG+AGG - chr2_3:9822023-9822042 Msa0277310:intron 55.0%
GAGAGTTTGGAGAGGAGCGA+GGG + chr2_3:9822074-9822093 None:intergenic 55.0%
TGAGAGTTTGGAGAGGAGCG+AGG + chr2_3:9822075-9822094 None:intergenic 55.0%
AGGAGGGGAGAAGAGGGCTA+TGG - chr2_3:9822030-9822049 Msa0277310:intron 60.0%
GGAGGGGAGAAGAGGGCTAT+GGG - chr2_3:9822031-9822050 Msa0277310:intron 60.0%
! AGCGAGGGACTTTGGGGGAA+GGG + chr2_3:9822059-9822078 None:intergenic 60.0%
AGAGGAGCGAGGGACTTTGG+GGG + chr2_3:9822064-9822083 None:intergenic 60.0%
GAGAGGAGCGAGGGACTTTG+GGG + chr2_3:9822065-9822084 None:intergenic 60.0%
GGAGAGGAGCGAGGGACTTT+GGG + chr2_3:9822066-9822085 None:intergenic 60.0%
TGGAGAGGAGCGAGGGACTT+TGG + chr2_3:9822067-9822086 None:intergenic 60.0%
AGGAGGGGAGAAGAGGGCTA+TGG - chr2_3:9822030-9822049 Msa0277310:intron 60.0%
GGAGGGGAGAAGAGGGCTAT+GGG - chr2_3:9822031-9822050 Msa0277310:intron 60.0%
! AGCGAGGGACTTTGGGGGAA+GGG + chr2_3:9822059-9822078 None:intergenic 60.0%
AGAGGAGCGAGGGACTTTGG+GGG + chr2_3:9822064-9822083 None:intergenic 60.0%
GAGAGGAGCGAGGGACTTTG+GGG + chr2_3:9822065-9822084 None:intergenic 60.0%
GGAGAGGAGCGAGGGACTTT+GGG + chr2_3:9822066-9822085 None:intergenic 60.0%
TGGAGAGGAGCGAGGGACTT+TGG + chr2_3:9822067-9822086 None:intergenic 60.0%
! GCGAGGGACTTTGGGGGAAG+GGG + chr2_3:9822058-9822077 None:intergenic 65.0%
! GAGCGAGGGACTTTGGGGGA+AGG + chr2_3:9822060-9822079 None:intergenic 65.0%
! GCGAGGGACTTTGGGGGAAG+GGG + chr2_3:9822058-9822077 None:intergenic 65.0%
! GAGCGAGGGACTTTGGGGGA+AGG + chr2_3:9822060-9822079 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 9821266 9822996 9821266 ID=Msa0277310;Name=Msa0277310
chr2_3 mRNA 9821266 9822996 9821266 ID=Msa0277310-mRNA-1;Parent=Msa0277310;Name=Msa0277310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=292|1|1|1|0.5|0.33|3|370|117
chr2_3 exon 9821266 9821833 9821266 ID=Msa0277310-mRNA-1:exon:4400;Parent=Msa0277310-mRNA-1
chr2_3 exon 9822451 9822864 9822451 ID=Msa0277310-mRNA-1:exon:4399;Parent=Msa0277310-mRNA-1
chr2_3 exon 9822963 9822996 9822963 ID=Msa0277310-mRNA-1:exon:4398;Parent=Msa0277310-mRNA-1
chr2_3 five_prime_UTR 9822963 9822996 9822963 ID=Msa0277310-mRNA-1:five_prime_utr;Parent=Msa0277310-mRNA-1
chr2_3 five_prime_UTR 9822607 9822864 9822607 ID=Msa0277310-mRNA-1:five_prime_utr;Parent=Msa0277310-mRNA-1
chr2_3 CDS 9822451 9822606 9822451 ID=Msa0277310-mRNA-1:cds;Parent=Msa0277310-mRNA-1
chr2_3 CDS 9821636 9821833 9821636 ID=Msa0277310-mRNA-1:cds;Parent=Msa0277310-mRNA-1
chr2_3 three_prime_UTR 9821266 9821635 9821266 ID=Msa0277310-mRNA-1:three_prime_utr;Parent=Msa0277310-mRNA-1
Gene Sequence

>Msa0277310

ATGACCAAGCATTCTTTTCTTCTTTCATCTGAATATCTGATCAACAGACAGAGTCACAATTCCTTCTTTGAGAAGTCAGATTTATTCTTTATGTGTATGTTGCGGCCCCTTTCGTCTGAGATCCAAGTGCAGAGGTCAGAGATAGAGGGTGCACAGTGGATGCCATTTGTGGAATACGCGTCTCAACCATTCGTCCGAAAGACTGATATTTTGAAGTATATGAACGATATTTGTTTGGCTAAGGTGGATGGGCGATATTCTGGATATACTCCAGTATCTACATTATCAAACTTCTCAGAACAGCAGTATTATATGTACTTGAATGCTGAAGCATTGAAAAGGCCCAACTCTTGA

Protein sequence

>Msa0277310

MTKHSFLLSSEYLINRQSHNSFFEKSDLFFMCMLRPLSSEIQVQRSEIEGAQWMPFVEYASQPFVRKTDILKYMNDICLAKVDGRYSGYTPVSTLSNFSEQQYYMYLNAEALKRPNS*