AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1117830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1117830 MtrunA17_Chr7g0255071 97.628 253 1 2 1 249 1 252 0.0 508
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1117830 AT2G41120.1 64.641 181 56 2 74 248 79 257 3.70e-82 247

Find 69 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTCATCCCTTCTTCTTT+AGG 0.216226 7_3:-66295165 Msa1117830:CDS
GAAAGATATTTCAGCAGTTT+TGG 0.240858 7_3:-66294655 Msa1117830:CDS
TTCACACCATTCATCATCTA+TGG 0.281172 7_3:-66295259 Msa1117830:exon
CCATGAATTAGTGTTCTTGA+TGG 0.287810 7_3:+66294931 None:intergenic
AGAAAGATCCTACCAACTTA+TGG 0.295152 7_3:-66294347 Msa1117830:CDS
TTCTGCCCTCAAGGGTCTAA+TGG 0.318799 7_3:-66294256 Msa1117830:CDS
CAAAATCAATGGAAAATGTT+TGG 0.326567 7_3:+66293954 None:intergenic
TTGAAATTCAGGTGCTGCTT+TGG 0.329593 7_3:+66295123 None:intergenic
AAAGGAGCTATGATGGAGTT+AGG 0.335188 7_3:-66294738 Msa1117830:CDS
AACTTAAGAAACGGTCCATT+AGG 0.336744 7_3:+66294681 None:intergenic
TATATCGTGGCTACTACTTC+AGG 0.362312 7_3:+66294047 None:intergenic
ATTTCATCACCTATTCAATC+AGG 0.383372 7_3:-66294887 Msa1117830:intron
ATGACTATCTTGAGTCCCTT+TGG 0.389670 7_3:-66294969 Msa1117830:CDS
CTTGAGCAAGCATCTTTGAA+TGG 0.392906 7_3:-66294073 Msa1117830:three_prime_UTR
AAGGAGCTATGATGGAGTTA+GGG 0.411699 7_3:-66294737 Msa1117830:CDS
AGCTCTTTGTTGTTTCATAC+AGG 0.411815 7_3:-66295086 Msa1117830:CDS
TGAGGTATGGGTGATAAAGT+TGG 0.413176 7_3:+66295181 None:intergenic
TATTGAAAACCTGATTGAAT+AGG 0.413740 7_3:+66294878 None:intergenic
GAAAGATCCTACCAACTTAT+GGG 0.416370 7_3:-66294346 Msa1117830:CDS
CCATCAAGAACACTAATTCA+TGG 0.433044 7_3:-66294931 Msa1117830:CDS
TACATTGTGTTCTGCCCTCA+AGG 0.434776 7_3:-66294265 Msa1117830:CDS
CTTTGCCCTTGGAGCTTCAG+TGG 0.439060 7_3:+66294231 None:intergenic
GAAGCAGTGACTCTATTTAA+TGG 0.441092 7_3:-66295012 Msa1117830:CDS
CGCGTATATGATCTAGAACT+TGG 0.442298 7_3:-66294304 Msa1117830:CDS
ATCTAAATCTACAAAATCAA+TGG 0.445583 7_3:+66293943 None:intergenic
ACTTAAGAAACGGTCCATTA+GGG 0.450454 7_3:+66294682 None:intergenic
TGCTGAATATAGAATCATAA+AGG 0.459099 7_3:-66294756 Msa1117830:intron
AAAGAAGAAGGGATGAGGTA+TGG 0.459773 7_3:+66295168 None:intergenic
CAGCTAACTCTATCTGTGTC+TGG 0.459791 7_3:+66294622 None:intergenic
AGAAAGATGGAGTTCCCTAA+TGG 0.471693 7_3:-66294696 Msa1117830:CDS
AGCCTTGGAAGCTTTGCCCT+TGG 0.471789 7_3:+66294220 None:intergenic
TGCTGCTTTGGATAAGTCAC+TGG 0.477277 7_3:+66295135 None:intergenic
GAATCATAAAGGAGCTATGA+TGG 0.481422 7_3:-66294745 Msa1117830:CDS
CTCCAAGGGCAAAGCTTCCA+AGG 0.483542 7_3:-66294222 Msa1117830:CDS
GATAAAGTTGGGATGAGGTA+TGG 0.498354 7_3:+66295193 None:intergenic
CTCTTCAGCATTGTGCCAAA+GGG 0.501801 7_3:+66294954 None:intergenic
TCTTTCTCAAACTTAAGAAA+CGG 0.509201 7_3:+66294672 None:intergenic
AGGAAAGAAGAAGATGAAGA+TGG 0.510141 7_3:+66295228 None:intergenic
AATCGTCAAGGATCACATGC+TGG 0.512901 7_3:-66294106 Msa1117830:three_prime_UTR
GAGGTATGGGTGATAAAGTT+GGG 0.514731 7_3:+66295182 None:intergenic
AAGAAGAAGGGATGAGGTAT+GGG 0.517035 7_3:+66295169 None:intergenic
TGGCACCATTAGACCCTTGA+GGG 0.520483 7_3:+66294251 None:intergenic
GCTCTTCAGCATTGTGCCAA+AGG 0.529216 7_3:+66294953 None:intergenic
CAGCATATTCTCCCATAAGT+TGG 0.529568 7_3:+66294335 None:intergenic
GGATTGAAACCTAAAGAAGA+AGG 0.535314 7_3:+66295156 None:intergenic
GTATGAAACAACAAAGAGCT+TGG 0.535551 7_3:+66295089 None:intergenic
ACTATGTAAATTGAGAAAGA+TGG 0.536572 7_3:-66294709 Msa1117830:CDS
GGAATACTGCAATGTGCAGT+TGG 0.536785 7_3:-66294910 Msa1117830:CDS
GAAGAGCCATAGATGATGAA+TGG 0.538579 7_3:+66295253 None:intergenic
CTTATGGGAGAATATGCTGC+AGG 0.540524 7_3:-66294331 Msa1117830:CDS
TGATGATATTTGTGTTGCAA+TGG 0.545164 7_3:-66294377 Msa1117830:CDS
ATCGTCAAGGATCACATGCT+GGG 0.566237 7_3:-66294105 Msa1117830:three_prime_UTR
TGGGTGATAAAGTTGGGATG+AGG 0.573129 7_3:+66295188 None:intergenic
TCTGAGGTAGCATTAAGCCT+TGG 0.575350 7_3:+66294205 None:intergenic
TGGTGCCACTGAAGCTCCAA+GGG 0.577264 7_3:-66294236 Msa1117830:CDS
ACATTGTGTTCTGCCCTCAA+GGG 0.584678 7_3:-66294264 Msa1117830:CDS
ATGGTGCCACTGAAGCTCCA+AGG 0.586032 7_3:-66294237 Msa1117830:CDS
AACCTAAAGAAGAAGGGATG+AGG 0.592437 7_3:+66295163 None:intergenic
ATATTCTCCCATAAGTTGGT+AGG 0.594558 7_3:+66294339 None:intergenic
CACAAAAGTTTAGTATATCG+TGG 0.599817 7_3:+66294034 None:intergenic
GATTGAAACCTAAAGAAGAA+GGG 0.606556 7_3:+66295157 None:intergenic
AGGAGCTATGATGGAGTTAG+GGG 0.608325 7_3:-66294736 Msa1117830:CDS
AGCTATGATGGAGTTAGGGG+AGG 0.617037 7_3:-66294733 Msa1117830:CDS
GCTATGATGGAGTTAGGGGA+GGG 0.630986 7_3:-66294732 Msa1117830:CDS
GTGGCACCATTAGACCCTTG+AGG 0.631454 7_3:+66294250 None:intergenic
ATATGCTACAAGATGTTCTG+AGG 0.636965 7_3:+66294189 None:intergenic
TTATGGGAGAATATGCTGCA+GGG 0.653319 7_3:-66294330 Msa1117830:CDS
CCTACTGTATAAAATCGTCA+AGG 0.659910 7_3:-66294118 Msa1117830:three_prime_UTR
GCAGTGACTCTATTTAATGG+TGG 0.669652 7_3:-66295009 Msa1117830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAATTATATTTATC+AGG - chr7_3:66295244-66295263 Msa1117830:exon 10.0%
!! CAAAAAAAATTATATTTATC+AGG - chr7_3:66295244-66295263 Msa1117830:exon 10.0%
!!! AGTTTTCATTTTATTTTTAG+TGG - chr7_3:66294402-66294421 Msa1117830:intron 15.0%
!! AAAAAATTATATTTATCAGG+AGG - chr7_3:66295247-66295266 Msa1117830:exon 15.0%
!!! AGTTTTCATTTTATTTTTAG+TGG - chr7_3:66294402-66294421 Msa1117830:intron 15.0%
!! AAAAAATTATATTTATCAGG+AGG - chr7_3:66295247-66295266 Msa1117830:exon 15.0%
!! ATAAAAAATGAACGGAAATA+TGG - chr7_3:66293940-66293959 Msa1117830:three_prime_UTR 20.0%
!!! TCATTTTATTTTTAGTGGTA+TGG - chr7_3:66294407-66294426 Msa1117830:intron 20.0%
!! TATATGATACATACATTTCA+AGG + chr7_3:66294662-66294681 None:intergenic 20.0%
!! GAATTAAATCTAATCTTGAA+TGG + chr7_3:66294781-66294800 None:intergenic 20.0%
!! ATTCACAAATGTTATATGAT+TGG - chr7_3:66294797-66294816 Msa1117830:intron 20.0%
!!! AAATGTTATATGATTGGTTT+TGG - chr7_3:66294803-66294822 Msa1117830:intron 20.0%
!! ATCTAAATCTACAAAATCAA+TGG + chr7_3:66295300-66295319 None:intergenic 20.0%
!! ATAAAAAATGAACGGAAATA+TGG - chr7_3:66293940-66293959 Msa1117830:three_prime_UTR 20.0%
!!! TCATTTTATTTTTAGTGGTA+TGG - chr7_3:66294407-66294426 Msa1117830:intron 20.0%
!! TATATGATACATACATTTCA+AGG + chr7_3:66294662-66294681 None:intergenic 20.0%
!! GAATTAAATCTAATCTTGAA+TGG + chr7_3:66294781-66294800 None:intergenic 20.0%
!! ATTCACAAATGTTATATGAT+TGG - chr7_3:66294797-66294816 Msa1117830:intron 20.0%
!!! AAATGTTATATGATTGGTTT+TGG - chr7_3:66294803-66294822 Msa1117830:intron 20.0%
!! ATCTAAATCTACAAAATCAA+TGG + chr7_3:66295300-66295319 None:intergenic 20.0%
!!! ATTTCCGTTCATTTTTTATG+TGG + chr7_3:66293939-66293958 None:intergenic 25.0%
! TATTGAAAACCTGATTGAAT+AGG + chr7_3:66294365-66294384 None:intergenic 25.0%
! TGCTGAATATAGAATCATAA+AGG - chr7_3:66294484-66294503 Msa1117830:intron 25.0%
! ACTATGTAAATTGAGAAAGA+TGG - chr7_3:66294531-66294550 Msa1117830:intron 25.0%
! TCTTTCTCAAACTTAAGAAA+CGG + chr7_3:66294571-66294590 None:intergenic 25.0%
!!! TACTGAGTTCAATTTTGATT+CGG + chr7_3:66294702-66294721 None:intergenic 25.0%
!!! TTTTTAACTTGAATTTGAGC+AGG - chr7_3:66294837-66294856 Msa1117830:intron 25.0%
! CAAAATCAATGGAAAATGTT+TGG + chr7_3:66295289-66295308 None:intergenic 25.0%
!!! ATTTCCGTTCATTTTTTATG+TGG + chr7_3:66293939-66293958 None:intergenic 25.0%
! TATTGAAAACCTGATTGAAT+AGG + chr7_3:66294365-66294384 None:intergenic 25.0%
! TGCTGAATATAGAATCATAA+AGG - chr7_3:66294484-66294503 Msa1117830:intron 25.0%
! ACTATGTAAATTGAGAAAGA+TGG - chr7_3:66294531-66294550 Msa1117830:intron 25.0%
! TCTTTCTCAAACTTAAGAAA+CGG + chr7_3:66294571-66294590 None:intergenic 25.0%
!!! TACTGAGTTCAATTTTGATT+CGG + chr7_3:66294702-66294721 None:intergenic 25.0%
!!! TTTTTAACTTGAATTTGAGC+AGG - chr7_3:66294837-66294856 Msa1117830:intron 25.0%
! CAAAATCAATGGAAAATGTT+TGG + chr7_3:66295289-66295308 None:intergenic 25.0%
!!! GTTCATTTTTTATGTGGTTG+GGG + chr7_3:66293933-66293952 None:intergenic 30.0%
!!! CGTTCATTTTTTATGTGGTT+GGG + chr7_3:66293934-66293953 None:intergenic 30.0%
CCAACCACATAAAAAATGAA+CGG - chr7_3:66293932-66293951 Msa1117830:three_prime_UTR 30.0%
GATTGAAACCTAAAGAAGAA+GGG + chr7_3:66294086-66294105 None:intergenic 30.0%
!!! AGTTGTTGCTTTTGAAATTC+AGG + chr7_3:66294131-66294150 None:intergenic 30.0%
ATTTCATCACCTATTCAATC+AGG - chr7_3:66294353-66294372 Msa1117830:CDS 30.0%
!!! TTTAGTGGTATGGTTTTGTT+TGG - chr7_3:66294417-66294436 Msa1117830:intron 30.0%
! GAAAGATATTTCAGCAGTTT+TGG - chr7_3:66294585-66294604 Msa1117830:intron 30.0%
TGATACATACATTTCAAGGT+TGG + chr7_3:66294658-66294677 None:intergenic 30.0%
ATCTAATCTTGAATGGTAAC+AGG + chr7_3:66294774-66294793 None:intergenic 30.0%
TGATGATATTTGTGTTGCAA+TGG - chr7_3:66294863-66294882 Msa1117830:intron 30.0%
CACAAAAGTTTAGTATATCG+TGG + chr7_3:66295209-66295228 None:intergenic 30.0%
GTGACAAACAAGAAAAAGAA+AGG + chr7_3:66293901-66293920 None:intergenic 30.0%
!!! GTTCATTTTTTATGTGGTTG+GGG + chr7_3:66293933-66293952 None:intergenic 30.0%
!!! CGTTCATTTTTTATGTGGTT+GGG + chr7_3:66293934-66293953 None:intergenic 30.0%
CCAACCACATAAAAAATGAA+CGG - chr7_3:66293932-66293951 Msa1117830:three_prime_UTR 30.0%
GATTGAAACCTAAAGAAGAA+GGG + chr7_3:66294086-66294105 None:intergenic 30.0%
!!! AGTTGTTGCTTTTGAAATTC+AGG + chr7_3:66294131-66294150 None:intergenic 30.0%
ATTTCATCACCTATTCAATC+AGG - chr7_3:66294353-66294372 Msa1117830:CDS 30.0%
!!! TTTAGTGGTATGGTTTTGTT+TGG - chr7_3:66294417-66294436 Msa1117830:intron 30.0%
! GAAAGATATTTCAGCAGTTT+TGG - chr7_3:66294585-66294604 Msa1117830:intron 30.0%
TGATACATACATTTCAAGGT+TGG + chr7_3:66294658-66294677 None:intergenic 30.0%
ATCTAATCTTGAATGGTAAC+AGG + chr7_3:66294774-66294793 None:intergenic 30.0%
TGATGATATTTGTGTTGCAA+TGG - chr7_3:66294863-66294882 Msa1117830:intron 30.0%
CACAAAAGTTTAGTATATCG+TGG + chr7_3:66295209-66295228 None:intergenic 30.0%
!!! CCGTTCATTTTTTATGTGGT+TGG + chr7_3:66293935-66293954 None:intergenic 35.0%
! ATGGTGTGAAAAGTTTTCTC+TGG + chr7_3:66293971-66293990 None:intergenic 35.0%
TTCACACCATTCATCATCTA+TGG - chr7_3:66293981-66294000 Msa1117830:three_prime_UTR 35.0%
AGGAAAGAAGAAGATGAAGA+TGG + chr7_3:66294015-66294034 None:intergenic 35.0%
!! AGGTATGGTAGATAGTTTTG+AGG + chr7_3:66294035-66294054 None:intergenic 35.0%
GGATTGAAACCTAAAGAAGA+AGG + chr7_3:66294087-66294106 None:intergenic 35.0%
GTATGAAACAACAAAGAGCT+TGG + chr7_3:66294154-66294173 None:intergenic 35.0%
!! AGCTCTTTGTTGTTTCATAC+AGG - chr7_3:66294154-66294173 Msa1117830:three_prime_UTR 35.0%
GAAGCAGTGACTCTATTTAA+TGG - chr7_3:66294228-66294247 Msa1117830:CDS 35.0%
CCATGAATTAGTGTTCTTGA+TGG + chr7_3:66294312-66294331 None:intergenic 35.0%
CCATCAAGAACACTAATTCA+TGG - chr7_3:66294309-66294328 Msa1117830:CDS 35.0%
GAATCATAAAGGAGCTATGA+TGG - chr7_3:66294495-66294514 Msa1117830:intron 35.0%
ACTTAAGAAACGGTCCATTA+GGG + chr7_3:66294561-66294580 None:intergenic 35.0%
AACTTAAGAAACGGTCCATT+AGG + chr7_3:66294562-66294581 None:intergenic 35.0%
AGAAAGATCCTACCAACTTA+TGG - chr7_3:66294893-66294912 Msa1117830:CDS 35.0%
GAAAGATCCTACCAACTTAT+GGG - chr7_3:66294894-66294913 Msa1117830:CDS 35.0%
!! ATATTCTCCCATAAGTTGGT+AGG + chr7_3:66294904-66294923 None:intergenic 35.0%
ATATGCTACAAGATGTTCTG+AGG + chr7_3:66295054-66295073 None:intergenic 35.0%
! CCTTGACGATTTTATACAGT+AGG + chr7_3:66295125-66295144 None:intergenic 35.0%
CCTACTGTATAAAATCGTCA+AGG - chr7_3:66295122-66295141 Msa1117830:CDS 35.0%
!!! CCGTTCATTTTTTATGTGGT+TGG + chr7_3:66293935-66293954 None:intergenic 35.0%
! ATGGTGTGAAAAGTTTTCTC+TGG + chr7_3:66293971-66293990 None:intergenic 35.0%
TTCACACCATTCATCATCTA+TGG - chr7_3:66293981-66294000 Msa1117830:three_prime_UTR 35.0%
AGGAAAGAAGAAGATGAAGA+TGG + chr7_3:66294015-66294034 None:intergenic 35.0%
!! AGGTATGGTAGATAGTTTTG+AGG + chr7_3:66294035-66294054 None:intergenic 35.0%
GGATTGAAACCTAAAGAAGA+AGG + chr7_3:66294087-66294106 None:intergenic 35.0%
GTATGAAACAACAAAGAGCT+TGG + chr7_3:66294154-66294173 None:intergenic 35.0%
!! AGCTCTTTGTTGTTTCATAC+AGG - chr7_3:66294154-66294173 Msa1117830:three_prime_UTR 35.0%
GAAGCAGTGACTCTATTTAA+TGG - chr7_3:66294228-66294247 Msa1117830:CDS 35.0%
CCATGAATTAGTGTTCTTGA+TGG + chr7_3:66294312-66294331 None:intergenic 35.0%
CCATCAAGAACACTAATTCA+TGG - chr7_3:66294309-66294328 Msa1117830:CDS 35.0%
GAATCATAAAGGAGCTATGA+TGG - chr7_3:66294495-66294514 Msa1117830:intron 35.0%
ACTTAAGAAACGGTCCATTA+GGG + chr7_3:66294561-66294580 None:intergenic 35.0%
AACTTAAGAAACGGTCCATT+AGG + chr7_3:66294562-66294581 None:intergenic 35.0%
AGAAAGATCCTACCAACTTA+TGG - chr7_3:66294893-66294912 Msa1117830:CDS 35.0%
GAAAGATCCTACCAACTTAT+GGG - chr7_3:66294894-66294913 Msa1117830:CDS 35.0%
!! ATATTCTCCCATAAGTTGGT+AGG + chr7_3:66294904-66294923 None:intergenic 35.0%
ATATGCTACAAGATGTTCTG+AGG + chr7_3:66295054-66295073 None:intergenic 35.0%
! CCTTGACGATTTTATACAGT+AGG + chr7_3:66295125-66295144 None:intergenic 35.0%
CCTACTGTATAAAATCGTCA+AGG - chr7_3:66295122-66295141 Msa1117830:CDS 35.0%
!!! CATTTTTTATGTGGTTGGGG+TGG + chr7_3:66293930-66293949 None:intergenic 40.0%
GAAGAGCCATAGATGATGAA+TGG + chr7_3:66293990-66294009 None:intergenic 40.0%
GATAAAGTTGGGATGAGGTA+TGG + chr7_3:66294050-66294069 None:intergenic 40.0%
GAGGTATGGGTGATAAAGTT+GGG + chr7_3:66294061-66294080 None:intergenic 40.0%
TGAGGTATGGGTGATAAAGT+TGG + chr7_3:66294062-66294081 None:intergenic 40.0%
AAGAAGAAGGGATGAGGTAT+GGG + chr7_3:66294074-66294093 None:intergenic 40.0%
AAAGAAGAAGGGATGAGGTA+TGG + chr7_3:66294075-66294094 None:intergenic 40.0%
TACCTCATCCCTTCTTCTTT+AGG - chr7_3:66294075-66294094 Msa1117830:three_prime_UTR 40.0%
AACCTAAAGAAGAAGGGATG+AGG + chr7_3:66294080-66294099 None:intergenic 40.0%
!! TTGAAATTCAGGTGCTGCTT+TGG + chr7_3:66294120-66294139 None:intergenic 40.0%
GCAGTGACTCTATTTAATGG+TGG - chr7_3:66294231-66294250 Msa1117830:CDS 40.0%
ATGACTATCTTGAGTCCCTT+TGG - chr7_3:66294271-66294290 Msa1117830:CDS 40.0%
! AAAGGAGCTATGATGGAGTT+AGG - chr7_3:66294502-66294521 Msa1117830:intron 40.0%
! AAGGAGCTATGATGGAGTTA+GGG - chr7_3:66294503-66294522 Msa1117830:intron 40.0%
AGAAAGATGGAGTTCCCTAA+TGG - chr7_3:66294544-66294563 Msa1117830:intron 40.0%
CAGCATATTCTCCCATAAGT+TGG + chr7_3:66294908-66294927 None:intergenic 40.0%
TTATGGGAGAATATGCTGCA+GGG - chr7_3:66294910-66294929 Msa1117830:CDS 40.0%
! CGCGTATATGATCTAGAACT+TGG - chr7_3:66294936-66294955 Msa1117830:CDS 40.0%
CTTGAGCAAGCATCTTTGAA+TGG - chr7_3:66295167-66295186 Msa1117830:CDS 40.0%
TATATCGTGGCTACTACTTC+AGG + chr7_3:66295196-66295215 None:intergenic 40.0%
!!! CATTTTTTATGTGGTTGGGG+TGG + chr7_3:66293930-66293949 None:intergenic 40.0%
GAAGAGCCATAGATGATGAA+TGG + chr7_3:66293990-66294009 None:intergenic 40.0%
GATAAAGTTGGGATGAGGTA+TGG + chr7_3:66294050-66294069 None:intergenic 40.0%
GAGGTATGGGTGATAAAGTT+GGG + chr7_3:66294061-66294080 None:intergenic 40.0%
TGAGGTATGGGTGATAAAGT+TGG + chr7_3:66294062-66294081 None:intergenic 40.0%
AAGAAGAAGGGATGAGGTAT+GGG + chr7_3:66294074-66294093 None:intergenic 40.0%
AAAGAAGAAGGGATGAGGTA+TGG + chr7_3:66294075-66294094 None:intergenic 40.0%
TACCTCATCCCTTCTTCTTT+AGG - chr7_3:66294075-66294094 Msa1117830:three_prime_UTR 40.0%
AACCTAAAGAAGAAGGGATG+AGG + chr7_3:66294080-66294099 None:intergenic 40.0%
!! TTGAAATTCAGGTGCTGCTT+TGG + chr7_3:66294120-66294139 None:intergenic 40.0%
GCAGTGACTCTATTTAATGG+TGG - chr7_3:66294231-66294250 Msa1117830:CDS 40.0%
ATGACTATCTTGAGTCCCTT+TGG - chr7_3:66294271-66294290 Msa1117830:CDS 40.0%
! AAAGGAGCTATGATGGAGTT+AGG - chr7_3:66294502-66294521 Msa1117830:intron 40.0%
! AAGGAGCTATGATGGAGTTA+GGG - chr7_3:66294503-66294522 Msa1117830:intron 40.0%
AGAAAGATGGAGTTCCCTAA+TGG - chr7_3:66294544-66294563 Msa1117830:intron 40.0%
CAGCATATTCTCCCATAAGT+TGG + chr7_3:66294908-66294927 None:intergenic 40.0%
TTATGGGAGAATATGCTGCA+GGG - chr7_3:66294910-66294929 Msa1117830:CDS 40.0%
! CGCGTATATGATCTAGAACT+TGG - chr7_3:66294936-66294955 Msa1117830:CDS 40.0%
CTTGAGCAAGCATCTTTGAA+TGG - chr7_3:66295167-66295186 Msa1117830:CDS 40.0%
TATATCGTGGCTACTACTTC+AGG + chr7_3:66295196-66295215 None:intergenic 40.0%
TGGGTGATAAAGTTGGGATG+AGG + chr7_3:66294055-66294074 None:intergenic 45.0%
!! TGCTGCTTTGGATAAGTCAC+TGG + chr7_3:66294108-66294127 None:intergenic 45.0%
CTCTTCAGCATTGTGCCAAA+GGG + chr7_3:66294289-66294308 None:intergenic 45.0%
GGAATACTGCAATGTGCAGT+TGG - chr7_3:66294330-66294349 Msa1117830:CDS 45.0%
! AGGAGCTATGATGGAGTTAG+GGG - chr7_3:66294504-66294523 Msa1117830:intron 45.0%
CAGCTAACTCTATCTGTGTC+TGG + chr7_3:66294621-66294640 None:intergenic 45.0%
CTTATGGGAGAATATGCTGC+AGG - chr7_3:66294909-66294928 Msa1117830:CDS 45.0%
TACATTGTGTTCTGCCCTCA+AGG - chr7_3:66294975-66294994 Msa1117830:CDS 45.0%
ACATTGTGTTCTGCCCTCAA+GGG - chr7_3:66294976-66294995 Msa1117830:CDS 45.0%
! TCTGAGGTAGCATTAAGCCT+TGG + chr7_3:66295038-66295057 None:intergenic 45.0%
AATCGTCAAGGATCACATGC+TGG - chr7_3:66295134-66295153 Msa1117830:CDS 45.0%
ATCGTCAAGGATCACATGCT+GGG - chr7_3:66295135-66295154 Msa1117830:CDS 45.0%
TGGGTGATAAAGTTGGGATG+AGG + chr7_3:66294055-66294074 None:intergenic 45.0%
!! TGCTGCTTTGGATAAGTCAC+TGG + chr7_3:66294108-66294127 None:intergenic 45.0%
CTCTTCAGCATTGTGCCAAA+GGG + chr7_3:66294289-66294308 None:intergenic 45.0%
GGAATACTGCAATGTGCAGT+TGG - chr7_3:66294330-66294349 Msa1117830:CDS 45.0%
! AGGAGCTATGATGGAGTTAG+GGG - chr7_3:66294504-66294523 Msa1117830:intron 45.0%
CAGCTAACTCTATCTGTGTC+TGG + chr7_3:66294621-66294640 None:intergenic 45.0%
CTTATGGGAGAATATGCTGC+AGG - chr7_3:66294909-66294928 Msa1117830:CDS 45.0%
TACATTGTGTTCTGCCCTCA+AGG - chr7_3:66294975-66294994 Msa1117830:CDS 45.0%
ACATTGTGTTCTGCCCTCAA+GGG - chr7_3:66294976-66294995 Msa1117830:CDS 45.0%
! TCTGAGGTAGCATTAAGCCT+TGG + chr7_3:66295038-66295057 None:intergenic 45.0%
AATCGTCAAGGATCACATGC+TGG - chr7_3:66295134-66295153 Msa1117830:CDS 45.0%
ATCGTCAAGGATCACATGCT+GGG - chr7_3:66295135-66295154 Msa1117830:CDS 45.0%
GCTCTTCAGCATTGTGCCAA+AGG + chr7_3:66294290-66294309 None:intergenic 50.0%
! AGCTATGATGGAGTTAGGGG+AGG - chr7_3:66294507-66294526 Msa1117830:intron 50.0%
! GCTATGATGGAGTTAGGGGA+GGG - chr7_3:66294508-66294527 Msa1117830:intron 50.0%
TTCTGCCCTCAAGGGTCTAA+TGG - chr7_3:66294984-66295003 Msa1117830:CDS 50.0%
TGGCACCATTAGACCCTTGA+GGG + chr7_3:66294992-66295011 None:intergenic 50.0%
GCTCTTCAGCATTGTGCCAA+AGG + chr7_3:66294290-66294309 None:intergenic 50.0%
! AGCTATGATGGAGTTAGGGG+AGG - chr7_3:66294507-66294526 Msa1117830:intron 50.0%
! GCTATGATGGAGTTAGGGGA+GGG - chr7_3:66294508-66294527 Msa1117830:intron 50.0%
TTCTGCCCTCAAGGGTCTAA+TGG - chr7_3:66294984-66295003 Msa1117830:CDS 50.0%
TGGCACCATTAGACCCTTGA+GGG + chr7_3:66294992-66295011 None:intergenic 50.0%
GTGGCACCATTAGACCCTTG+AGG + chr7_3:66294993-66295012 None:intergenic 55.0%
!! ATGGTGCCACTGAAGCTCCA+AGG - chr7_3:66295003-66295022 Msa1117830:CDS 55.0%
!! TGGTGCCACTGAAGCTCCAA+GGG - chr7_3:66295004-66295023 Msa1117830:CDS 55.0%
CTTTGCCCTTGGAGCTTCAG+TGG + chr7_3:66295012-66295031 None:intergenic 55.0%
CTCCAAGGGCAAAGCTTCCA+AGG - chr7_3:66295018-66295037 Msa1117830:CDS 55.0%
AGCCTTGGAAGCTTTGCCCT+TGG + chr7_3:66295023-66295042 None:intergenic 55.0%
GTGGCACCATTAGACCCTTG+AGG + chr7_3:66294993-66295012 None:intergenic 55.0%
!! ATGGTGCCACTGAAGCTCCA+AGG - chr7_3:66295003-66295022 Msa1117830:CDS 55.0%
!! TGGTGCCACTGAAGCTCCAA+GGG - chr7_3:66295004-66295023 Msa1117830:CDS 55.0%
CTTTGCCCTTGGAGCTTCAG+TGG + chr7_3:66295012-66295031 None:intergenic 55.0%
CTCCAAGGGCAAAGCTTCCA+AGG - chr7_3:66295018-66295037 Msa1117830:CDS 55.0%
AGCCTTGGAAGCTTTGCCCT+TGG + chr7_3:66295023-66295042 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 66293899 66295363 66293899 ID=Msa1117830;Name=Msa1117830
chr7_3 mRNA 66293899 66295363 66293899 ID=Msa1117830-mRNA-1;Parent=Msa1117830;Name=Msa1117830-mRNA-1;_AED=0.08;_eAED=0.08;_QI=101|1|1|1|1|1|3|278|249
chr7_3 exon 66293899 66294403 66293899 ID=Msa1117830-mRNA-1:exon:16060;Parent=Msa1117830-mRNA-1
chr7_3 exon 66294619 66294766 66294619 ID=Msa1117830-mRNA-1:exon:16059;Parent=Msa1117830-mRNA-1
chr7_3 exon 66294888 66295363 66294888 ID=Msa1117830-mRNA-1:exon:16058;Parent=Msa1117830-mRNA-1
chr7_3 five_prime_UTR 66295263 66295363 66295263 ID=Msa1117830-mRNA-1:five_prime_utr;Parent=Msa1117830-mRNA-1
chr7_3 CDS 66294888 66295262 66294888 ID=Msa1117830-mRNA-1:cds;Parent=Msa1117830-mRNA-1
chr7_3 CDS 66294619 66294766 66294619 ID=Msa1117830-mRNA-1:cds;Parent=Msa1117830-mRNA-1
chr7_3 CDS 66294177 66294403 66294177 ID=Msa1117830-mRNA-1:cds;Parent=Msa1117830-mRNA-1
chr7_3 three_prime_UTR 66293899 66294176 66293899 ID=Msa1117830-mRNA-1:three_prime_utr;Parent=Msa1117830-mRNA-1
Gene Sequence

>Msa1117830

ATGGCTCTTCTTCCATCTTCATCTTCTTCTTTCCTCAAAACTATCTACCATACCTCATCCCAACTTTATCACCCATACCTCATCCCTTCTTCTTTAGGTTTCAATCCAGTGACTTATCCAAAGCAGCACCTGAATTTCAAAAGCAACAACTCCAAGCTCTTTGTTGTTTCATACAGGTATTTCACTAAAGAAGAAGACGACGAAGAAGAAGAAGAGCACAACTTTGATGAAGCAGTGACTCTATTTAATGGTGGAGAGTACTACAAATGTCATGACTATCTTGAGTCCCTTTGGCACAATGCTGAAGAGCCATCAAGAACACTAATTCATGGAATACTGCAATGTGCAGTTGGATTTCATCACCTATTCAATCAGAATCATAAAGGAGCTATGATGGAGTTAGGGGAGGGACTATGTAAATTGAGAAAGATGGAGTTCCCTAATGGACCGTTTCTTAAGTTTGAGAAAGATATTTCAGCAGTTTTGGAATTTATCTACCAGACACAGATAGAGTTAGCTGCATGTAGTGATGATATTTGTGTTGCAATGGATCAATCAGAAAGATCCTACCAACTTATGGGAGAATATGCTGCAGGGAAGCGCGTATATGATCTAGAACTTGGTCGTGATGCATCAGTGTACATTGTGTTCTGCCCTCAAGGGTCTAATGGTGCCACTGAAGCTCCAAGGGCAAAGCTTCCAAGGCTTAATGCTACCTCAGAACATCTTGTAGCATATGAATACAAGTAA

Protein sequence

>Msa1117830

MALLPSSSSSFLKTIYHTSSQLYHPYLIPSSLGFNPVTYPKQHLNFKSNNSKLFVVSYRYFTKEEDDEEEEEHNFDEAVTLFNGGEYYKCHDYLESLWHNAEEPSRTLIHGILQCAVGFHHLFNQNHKGAMMELGEGLCKLRKMEFPNGPFLKFEKDISAVLEFIYQTQIELAACSDDICVAMDQSERSYQLMGEYAAGKRVYDLELGRDASVYIVFCPQGSNGATEAPRAKLPRLNATSEHLVAYEYK*