AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1177620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177620 MtrunA17_Chr8g0348281 86.831 243 15 3 42 282 1 228 3.31e-154 429
Msa1177620 MtrunA17_Chr4g0019181 93.506 77 5 0 152 228 92 168 1.28e-48 159
Msa1177620 MtrunA17_Chr4g0019171 82.558 86 10 1 42 122 1 86 1.62e-42 140
Msa1177620 MtrunA17_Chr1g0190931 26.728 217 151 4 54 263 17 232 2.40e-19 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177620 AT2G46100.1 59.259 243 82 3 35 268 1 235 7.22e-103 300
Msa1177620 AT2G46100.2 50.279 179 72 3 36 205 2 172 4.21e-52 170
Msa1177620 AT3G04890.3 35.664 143 86 3 134 272 80 220 7.44e-22 91.7
Msa1177620 AT3G04890.1 35.664 143 86 3 134 272 76 216 7.74e-22 91.3
Msa1177620 AT3G04890.2 32.283 127 74 2 134 248 76 202 1.26e-15 74.7
Msa1177620 AT3G04890.4 32.283 127 74 2 134 248 80 206 1.27e-15 74.7

Find 61 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGGAGACCTATTCTTTC+TGG 0.087001 8_1:-10012107 Msa1177620:intron
AAAAGGAACTGCACTAATTT+TGG 0.093922 8_1:-10012573 Msa1177620:CDS
TGTTCTCTTGTTTAGTTTCA+TGG 0.194002 8_1:-10014202 Msa1177620:CDS
GTTGTTGTGACTCTTGATTT+TGG 0.256583 8_1:+10014052 None:intergenic
AAAGTTTGCTTAATTATTGA+TGG 0.269237 8_1:-10011293 Msa1177620:three_prime_UTR
AGGAATATCCTGTATATATA+TGG 0.323875 8_1:-10011431 Msa1177620:three_prime_UTR
TATGGTTTACCAGATTAATT+AGG 0.325566 8_1:-10011413 Msa1177620:three_prime_UTR
TTGTGGTGATGATGTTGTTT+TGG 0.338335 8_1:+10014120 None:intergenic
ACAGAACAATGTATTTCTTA+AGG 0.354819 8_1:-10014031 Msa1177620:CDS
CTTTGTTCAAGCAAATTCTA+AGG 0.368956 8_1:-10011627 Msa1177620:CDS
TGGTATAGTTCTGAGCTTCT+AGG 0.369490 8_1:-10014003 Msa1177620:CDS
GCTGTATCTTGTCCTTTCCT+TGG 0.372617 8_1:-10012124 Msa1177620:CDS
CACATGTAAGTCTGTGGTAT+TGG 0.388973 8_1:-10011499 Msa1177620:three_prime_UTR
CTGTGACAAAATAAGATCTT+TGG 0.390504 8_1:+10013869 None:intergenic
CCATGACAGGATAAAGGAAT+TGG 0.428536 8_1:-10012161 Msa1177620:intron
TTTGCTCCATGACAGGATAA+AGG 0.440137 8_1:-10012167 Msa1177620:intron
ATTCACAGACCTAATTAATC+TGG 0.444076 8_1:+10011404 None:intergenic
CTGGTAAACCATATATATAC+AGG 0.446381 8_1:+10011423 None:intergenic
CTTTCAGGCATGTGGAGCAT+TGG 0.446746 8_1:-10011666 Msa1177620:intron
GTACTAATTATAGAAGTCTA+TGG 0.447623 8_1:-10011473 Msa1177620:three_prime_UTR
AAGGACTTCAACGTTTCAAA+AGG 0.458374 8_1:-10012590 Msa1177620:CDS
TTGAAGTTGTCCAAGTGAAT+AGG 0.459855 8_1:-10011562 Msa1177620:exon
TGAGATTTACCAGAAAGAAT+AGG 0.461380 8_1:+10012098 None:intergenic
GTGGTGATGGTTGTGACTAA+TGG 0.469661 8_1:+10014161 None:intergenic
TGAAGAGGATTGTGAATTTG+CGG 0.489339 8_1:-10012631 Msa1177620:CDS
TTTAAGCTAAATCCCTTGCT+AGG 0.497530 8_1:+10011604 None:intergenic
ATTAATTAGGTCTGTGAATG+TGG 0.499247 8_1:-10011400 Msa1177620:three_prime_UTR
GTAAAATTTAAATACAAGGC+AGG 0.505184 8_1:-10014270 Msa1177620:CDS
TTATAATTTACCTATTCACT+TGG 0.507238 8_1:+10011552 None:intergenic
TTATGTAAAATTTAAATACA+AGG 0.512231 8_1:-10014274 Msa1177620:CDS
TGTTAGAATCTAAGAACAAA+CGG 0.513330 8_1:+10014241 None:intergenic
ATGTATTTCTTAAGGTTGCA+TGG 0.514798 8_1:-10014023 Msa1177620:CDS
TGCATTGAATTTGAAACCTG+TGG 0.519523 8_1:+10014085 None:intergenic
GAAGCTTCTTCTTCAACAGA+TGG 0.522340 8_1:+10013955 None:intergenic
AGGTTTCAAATTCAATGCAA+TGG 0.523136 8_1:-10014081 Msa1177620:CDS
TTCTATGGTGAACTCTATCA+AGG 0.526181 8_1:+10014457 Msa1177630:five_prime_UTR
GTAGGAGCTTATGATGTACT+AGG 0.528168 8_1:-10011451 Msa1177620:three_prime_UTR
TACAACAGAAGCACGATCAA+TGG 0.528751 8_1:+10013912 None:intergenic
CAACTATGAATCTTATGAAG+TGG 0.531678 8_1:-10012533 Msa1177620:CDS
CCTGAAAACTTTCAGGCATG+TGG 0.535655 8_1:-10011674 Msa1177620:intron
TGTGAATTTGCGGATCCAGC+GGG 0.538988 8_1:-10012621 Msa1177620:CDS
CACATTGAATGCATATGAAG+AGG 0.540073 8_1:-10012646 Msa1177620:CDS
AACTATGAATCTTATGAAGT+GGG 0.541276 8_1:-10012532 Msa1177620:CDS
AGGATAAAGGAATTGGTCAC+TGG 0.548719 8_1:-10012154 Msa1177620:CDS
GCAAATTCTAAGGCCTAGCA+AGG 0.551037 8_1:-10011617 Msa1177620:CDS
CTTCTTCAACAGATGGAGAA+CGG 0.568481 8_1:+10013962 None:intergenic
CCAGAAAGAATAGGTCTCCA+AGG 0.570816 8_1:+10012107 None:intergenic
TAATTATAGAAGTCTATGGT+AGG 0.578652 8_1:-10011469 Msa1177620:three_prime_UTR
TTAAAATAACAGCTCTAGTG+TGG 0.582268 8_1:+10014347 None:intergenic
AAGAATAGGTCTCCAAGGAA+AGG 0.586808 8_1:+10012112 None:intergenic
GCTTAAAAGATTATGTGACT+AGG 0.588291 8_1:-10011588 Msa1177620:CDS
AGAACAAAGAAGTGTGGTGA+TGG 0.594904 8_1:+10014148 None:intergenic
ATTATACACATGTAAGTCTG+TGG 0.609997 8_1:-10011505 Msa1177620:three_prime_UTR
TTGTGAATTTGCGGATCCAG+CGG 0.612444 8_1:-10012622 Msa1177620:CDS
AGTCCTTTAAAAGATCCCGC+TGG 0.619834 8_1:+10012606 None:intergenic
TAATATATGCTGCAGCAACT+GGG 0.621935 8_1:-10011813 Msa1177620:intron
TAAAAGATTATGTGACTAGG+TGG 0.630969 8_1:-10011585 Msa1177620:CDS
AAATTTAAATACAAGGCAGG+TGG 0.662495 8_1:-10014267 Msa1177620:CDS
CAAATTCTAAGGCCTAGCAA+GGG 0.670959 8_1:-10011616 Msa1177620:CDS
ATGGTTTGAAGAAGTCTCTG+TGG 0.682726 8_1:+10013931 None:intergenic
GTGCAAAGAACAAAGAAGTG+TGG 0.724805 8_1:+10014142 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGTAAAATTTAAATACA+AGG - chr8_1:10011458-10011477 Msa1177620:three_prime_UTR 10.0%
!! AAAAAAAATTGAATCTTCTA+TGG + chr8_1:10011293-10011312 None:intergenic 15.0%
!!! TATAGTTTCAATTTTAAGTA+TGG - chr8_1:10011987-10012006 Msa1177620:intron 15.0%
!!! CAGTTTCTAAAAAAAAAAAT+AGG - chr8_1:10012453-10012472 Msa1177620:intron 15.0%
!!! TCAAATTTGTTAGTTTAATT+AGG + chr8_1:10012494-10012513 None:intergenic 15.0%
!!! GTATTTTGATTATAATCAAA+TGG - chr8_1:10013022-10013041 Msa1177620:intron 15.0%
!!! AATTTAATTTTGTTCATCAA+TGG + chr8_1:10013690-10013709 None:intergenic 15.0%
!! ACAATATCATAAATCTCTAA+CGG - chr8_1:10012566-10012585 Msa1177620:CDS 20.0%
!!! TACTACTCAATAATGTTTTA+GGG - chr8_1:10012854-10012873 Msa1177620:intron 20.0%
!! ATGTTCAAATTAACATGAAT+CGG - chr8_1:10013802-10013821 Msa1177620:intron 20.0%
!! TTATAATTTACCTATTCACT+TGG + chr8_1:10014183-10014202 None:intergenic 20.0%
!!! AAAGTTTGCTTAATTATTGA+TGG - chr8_1:10014439-10014458 Msa1177620:five_prime_UTR 20.0%
!!! TTCATTTTTTTTTTGTGACG+TGG - chr8_1:10011327-10011346 Msa1177620:three_prime_UTR 25.0%
! GTAAAATTTAAATACAAGGC+AGG - chr8_1:10011462-10011481 Msa1177620:three_prime_UTR 25.0%
! TGTTAGAATCTAAGAACAAA+CGG + chr8_1:10011494-10011513 None:intergenic 25.0%
! ACAGAACAATGTATTTCTTA+AGG - chr8_1:10011701-10011720 Msa1177620:intron 25.0%
! AGAAAACAAAGGAAACAAAT+TGG + chr8_1:10011929-10011948 None:intergenic 25.0%
!!! TGTCTTTTTTACACATCATT+TGG - chr8_1:10012023-10012042 Msa1177620:intron 25.0%
!! GAGAAAAAGTTGATTACAAT+CGG - chr8_1:10012273-10012292 Msa1177620:intron 25.0%
! TGTTAAATGTAGTAAGAAGT+TGG + chr8_1:10012539-10012558 None:intergenic 25.0%
!!! ATTGCTATTTTAAGCACTTA+CGG + chr8_1:10012683-10012702 None:intergenic 25.0%
! TGCTTAAAATAGCAATACAA+AGG - chr8_1:10012687-10012706 Msa1177620:intron 25.0%
!! GTACTACTCAATAATGTTTT+AGG - chr8_1:10012853-10012872 Msa1177620:intron 25.0%
! CAAAATGAAGCTAATACAAT+TGG - chr8_1:10012986-10013005 Msa1177620:intron 25.0%
! TTATAATCAAATGGTTCACA+TGG - chr8_1:10013031-10013050 Msa1177620:intron 25.0%
! AACTATGAATCTTATGAAGT+GGG - chr8_1:10013200-10013219 Msa1177620:intron 25.0%
!! AATATAGAGTTTTGCAACTT+AGG - chr8_1:10013272-10013291 Msa1177620:intron 25.0%
!! TCAATCTTTTTATTGAGTGT+TGG - chr8_1:10013505-10013524 Msa1177620:intron 25.0%
! CTCAATCTATTAGATATACA+TGG + chr8_1:10013667-10013686 None:intergenic 25.0%
! TGTTCAAATTAACATGAATC+GGG - chr8_1:10013803-10013822 Msa1177620:intron 25.0%
!!! TACTATTTTGATACACAATC+AGG - chr8_1:10013951-10013970 Msa1177620:CDS 25.0%
! GTACTAATTATAGAAGTCTA+TGG - chr8_1:10014259-10014278 Msa1177620:CDS 25.0%
! TAATTATAGAAGTCTATGGT+AGG - chr8_1:10014263-10014282 Msa1177620:CDS 25.0%
! AGGAATATCCTGTATATATA+TGG - chr8_1:10014301-10014320 Msa1177620:CDS 25.0%
! TATGGTTTACCAGATTAATT+AGG - chr8_1:10014319-10014338 Msa1177620:exon 25.0%
!!! CTTTTCTCTGTTATTTTTTC+TGG + chr8_1:10014366-10014385 None:intergenic 25.0%
! CAGAAAAAATAACAGAGAAA+AGG - chr8_1:10014364-10014383 Msa1177620:five_prime_UTR 25.0%
!!! TTTTTTTTGTGACGTGGATT+TGG - chr8_1:10011333-10011352 Msa1177620:three_prime_UTR 30.0%
! TTAAAATAACAGCTCTAGTG+TGG + chr8_1:10011388-10011407 None:intergenic 30.0%
! CCACATAAAAATGGTGATTT+TGG + chr8_1:10011412-10011431 None:intergenic 30.0%
!! CCAAAATCACCATTTTTATG+TGG - chr8_1:10011409-10011428 Msa1177620:three_prime_UTR 30.0%
TAATGCTAGCCACATAAAAA+TGG + chr8_1:10011421-10011440 None:intergenic 30.0%
AAATTTAAATACAAGGCAGG+TGG - chr8_1:10011465-10011484 Msa1177620:three_prime_UTR 30.0%
! TGTTCTCTTGTTTAGTTTCA+TGG - chr8_1:10011530-10011549 Msa1177620:three_prime_UTR 30.0%
!! TGTGGATTTTTGTGTTATTG+TGG + chr8_1:10011632-10011651 None:intergenic 30.0%
ACAATAACACAAAAATCCAC+AGG - chr8_1:10011631-10011650 Msa1177620:CDS 30.0%
AGGTTTCAAATTCAATGCAA+TGG - chr8_1:10011651-10011670 Msa1177620:CDS 30.0%
ATGTATTTCTTAAGGTTGCA+TGG - chr8_1:10011709-10011728 Msa1177620:intron 30.0%
CTGTGACAAAATAAGATCTT+TGG + chr8_1:10011866-10011885 None:intergenic 30.0%
!!! CAAAGATCTTATTTTGTCAC+AGG - chr8_1:10011864-10011883 Msa1177620:intron 30.0%
!!! TGCTTTTTCTTGTCTTATGT+TGG - chr8_1:10011897-10011916 Msa1177620:intron 30.0%
!! TCATTTGGATGATTGATTTG+TGG - chr8_1:10012038-10012057 Msa1177620:intron 30.0%
TATGACTATTCAGAGTTGTT+AGG - chr8_1:10012068-10012087 Msa1177620:intron 30.0%
!! GTATCTTTTACTTTTGAACC+AGG - chr8_1:10012798-10012817 Msa1177620:intron 30.0%
!!! CTCAATAATGTTTTAGGGAT+TGG - chr8_1:10012859-10012878 Msa1177620:intron 30.0%
! AAAAGGAACTGCACTAATTT+TGG - chr8_1:10013159-10013178 Msa1177620:intron 30.0%
CAACTATGAATCTTATGAAG+TGG - chr8_1:10013199-10013218 Msa1177620:intron 30.0%
!!! TAGGTTTTAAGTTGTAGTTG+CGG - chr8_1:10013291-10013310 Msa1177620:intron 30.0%
GTGTAATATCAAGAGTTACA+AGG + chr8_1:10013332-10013351 None:intergenic 30.0%
TTTAGCAACTCTATTCCTTT+AGG + chr8_1:10013447-10013466 None:intergenic 30.0%
TGAGATTTACCAGAAAGAAT+AGG + chr8_1:10013637-10013656 None:intergenic 30.0%
ACGAAAAATAAATCCAAGAG+AGG + chr8_1:10013764-10013783 None:intergenic 30.0%
! CGGGTTTTTAATAGAATATG+TGG - chr8_1:10013822-10013841 Msa1177620:intron 30.0%
TATTTAGCAGCAACAAAAAG+CGG - chr8_1:10013860-10013879 Msa1177620:intron 30.0%
CTAAATTCCTGAAAACTTTC+AGG - chr8_1:10014051-10014070 Msa1177620:CDS 30.0%
CTTTGTTCAAGCAAATTCTA+AGG - chr8_1:10014105-10014124 Msa1177620:CDS 30.0%
GCTTAAAAGATTATGTGACT+AGG - chr8_1:10014144-10014163 Msa1177620:CDS 30.0%
TAAAAGATTATGTGACTAGG+TGG - chr8_1:10014147-10014166 Msa1177620:CDS 30.0%
ATTATACACATGTAAGTCTG+TGG - chr8_1:10014227-10014246 Msa1177620:CDS 30.0%
CTGGTAAACCATATATATAC+AGG + chr8_1:10014312-10014331 None:intergenic 30.0%
ATTCACAGACCTAATTAATC+TGG + chr8_1:10014331-10014350 None:intergenic 30.0%
ATTAATTAGGTCTGTGAATG+TGG - chr8_1:10014332-10014351 Msa1177620:five_prime_UTR 30.0%
TTCTATGGTGAACTCTATCA+AGG + chr8_1:10011278-10011297 None:intergenic 35.0%
!! TTGTGGTGATGATGTTGTTT+TGG + chr8_1:10011615-10011634 None:intergenic 35.0%
! TGCATTGAATTTGAAACCTG+TGG + chr8_1:10011650-10011669 None:intergenic 35.0%
! GTTGTTGTGACTCTTGATTT+TGG + chr8_1:10011683-10011702 None:intergenic 35.0%
! AGACAAGAAAAAGCATGTGA+TGG + chr8_1:10011892-10011911 None:intergenic 35.0%
!!! TTTCCTTTGTTTTCTGCGTT+TGG - chr8_1:10011934-10011953 Msa1177620:intron 35.0%
AATCCAAACGCAGAAAACAA+AGG + chr8_1:10011940-10011959 None:intergenic 35.0%
TCTGCGTTTGGATTTAGATT+TGG - chr8_1:10011946-10011965 Msa1177620:intron 35.0%
ACTCGTAGTTACTGATAAGT+GGG - chr8_1:10012098-10012117 Msa1177620:intron 35.0%
! AACGTTTGTTGGGTTATGAT+TGG - chr8_1:10012138-10012157 Msa1177620:CDS 35.0%
! ACGTTTGTTGGGTTATGATT+GGG - chr8_1:10012139-10012158 Msa1177620:CDS 35.0%
!! GAACTTTAAAGCTGACATGA+AGG - chr8_1:10012247-10012266 Msa1177620:intron 35.0%
GCAACAACAACAGAAAACAA+AGG + chr8_1:10012382-10012401 None:intergenic 35.0%
TCAGGAGCAATGTTGTAATA+TGG - chr8_1:10012618-10012637 Msa1177620:CDS 35.0%
CACATTGAATGCATATGAAG+AGG - chr8_1:10013086-10013105 Msa1177620:intron 35.0%
TGAAGAGGATTGTGAATTTG+CGG - chr8_1:10013101-10013120 Msa1177620:intron 35.0%
AAGGACTTCAACGTTTCAAA+AGG - chr8_1:10013142-10013161 Msa1177620:intron 35.0%
! CACTAATTTTGGATCACTTC+TGG - chr8_1:10013170-10013189 Msa1177620:intron 35.0%
! TATGAAGTGGGAAGATTTTG+AGG - chr8_1:10013212-10013231 Msa1177620:intron 35.0%
!! AAGCAGTAGAAAAGTGTTCA+AGG + chr8_1:10013247-10013266 None:intergenic 35.0%
TTACACGCAACTGATGATAA+AGG - chr8_1:10013346-10013365 Msa1177620:intron 35.0%
GATGATAAAGGTTTCTGATG+CGG - chr8_1:10013358-10013377 Msa1177620:intron 35.0%
! CTCTATTCCTTTAGGTTACA+CGG + chr8_1:10013439-10013458 None:intergenic 35.0%
TGCTGCAGCATATATTAACA+TGG + chr8_1:10013916-10013935 None:intergenic 35.0%
TTAATATATGCTGCAGCAAC+TGG - chr8_1:10013918-10013937 Msa1177620:CDS 35.0%
TAATATATGCTGCAGCAACT+GGG - chr8_1:10013919-10013938 Msa1177620:CDS 35.0%
CACAATCAGGAAAAATATGC+AGG - chr8_1:10013964-10013983 Msa1177620:CDS 35.0%
!! TGCTTGAACAAAGCCATTTT+TGG + chr8_1:10014098-10014117 None:intergenic 35.0%
TTTAAGCTAAATCCCTTGCT+AGG + chr8_1:10014131-10014150 None:intergenic 35.0%
TTGAAGTTGTCCAAGTGAAT+AGG - chr8_1:10014170-10014189 Msa1177620:CDS 35.0%
! AGAACAAAGAAGTGTGGTGA+TGG + chr8_1:10011587-10011606 None:intergenic 40.0%
GTGCAAAGAACAAAGAAGTG+TGG + chr8_1:10011593-10011612 None:intergenic 40.0%
!! TGGTATAGTTCTGAGCTTCT+AGG - chr8_1:10011729-10011748 Msa1177620:intron 40.0%
CTTCTTCAACAGATGGAGAA+CGG + chr8_1:10011773-10011792 None:intergenic 40.0%
GAAGCTTCTTCTTCAACAGA+TGG + chr8_1:10011780-10011799 None:intergenic 40.0%
ATGGTTTGAAGAAGTCTCTG+TGG + chr8_1:10011804-10011823 None:intergenic 40.0%
! TACAACAGAAGCACGATCAA+TGG + chr8_1:10011823-10011842 None:intergenic 40.0%
GACTCGTAGTTACTGATAAG+TGG - chr8_1:10012097-10012116 Msa1177620:intron 40.0%
! CGTTTGTTGGGTTATGATTG+GGG - chr8_1:10012140-10012159 Msa1177620:CDS 40.0%
! GTTTGTTGGGTTATGATTGG+GGG - chr8_1:10012141-10012160 Msa1177620:CDS 40.0%
TTTGTTGGGTTATGATTGGG+GGG - chr8_1:10012142-10012161 Msa1177620:CDS 40.0%
GTTAGAATAGAACAGCAACC+TGG + chr8_1:10012819-10012838 None:intergenic 40.0%
GCAATGCTGAGAACAAATAG+AGG - chr8_1:10012881-10012900 Msa1177620:intron 40.0%
TCATACATTTGCTCCATGAC+AGG - chr8_1:10013558-10013577 Msa1177620:intron 40.0%
TTTGCTCCATGACAGGATAA+AGG - chr8_1:10013565-10013584 Msa1177620:intron 40.0%
CCAATTCCTTTATCCTGTCA+TGG + chr8_1:10013574-10013593 None:intergenic 40.0%
CCATGACAGGATAAAGGAAT+TGG - chr8_1:10013571-10013590 Msa1177620:intron 40.0%
AGGATAAAGGAATTGGTCAC+TGG - chr8_1:10013578-10013597 Msa1177620:intron 40.0%
AAGAATAGGTCTCCAAGGAA+AGG + chr8_1:10013623-10013642 None:intergenic 40.0%
CATTTGACTGAAACCTCTCT+TGG - chr8_1:10013748-10013767 Msa1177620:intron 40.0%
GCAGGTGAGAAAAATGTTCA+TGG - chr8_1:10013982-10014001 Msa1177620:CDS 40.0%
GCATTGGAATGTGCCAAAAA+TGG - chr8_1:10014082-10014101 Msa1177620:CDS 40.0%
!! CAAATTCTAAGGCCTAGCAA+GGG - chr8_1:10014116-10014135 Msa1177620:CDS 40.0%
CACATGTAAGTCTGTGGTAT+TGG - chr8_1:10014233-10014252 Msa1177620:CDS 40.0%
GTAGGAGCTTATGATGTACT+AGG - chr8_1:10014281-10014300 Msa1177620:CDS 40.0%
!! GTGGTGATGGTTGTGACTAA+TGG + chr8_1:10011574-10011593 None:intergenic 45.0%
GTAGTTACTGATAAGTGGGC+AGG - chr8_1:10012102-10012121 Msa1177620:intron 45.0%
TTACTGATAAGTGGGCAGGT+CGG - chr8_1:10012106-10012125 Msa1177620:intron 45.0%
! TGTGGAATGGTTTGTGGAGA+TGG - chr8_1:10012316-10012335 Msa1177620:intron 45.0%
! AATGGTTTGTGGAGATGGCT+TGG - chr8_1:10012321-10012340 Msa1177620:intron 45.0%
!!! TGGAGATGGCTTGGTTTTTC+AGG - chr8_1:10012330-10012349 Msa1177620:intron 45.0%
!!! TGGCTTGGTTTTTCAGGTTG+TGG - chr8_1:10012336-10012355 Msa1177620:intron 45.0%
!!! GGCTTGGTTTTTCAGGTTGT+GGG - chr8_1:10012337-10012356 Msa1177620:intron 45.0%
!!! GCTTGGTTTTTCAGGTTGTG+GGG - chr8_1:10012338-10012357 Msa1177620:intron 45.0%
!!! CTTGGTTTTTCAGGTTGTGG+GGG - chr8_1:10012339-10012358 Msa1177620:intron 45.0%
GAGCACAACAAAAAACTCGC+GGG + chr8_1:10012404-10012423 None:intergenic 45.0%
GGAGCACAACAAAAAACTCG+CGG + chr8_1:10012405-10012424 None:intergenic 45.0%
ATCTATTCCTCCCAACTCTC+AGG - chr8_1:10013057-10013076 Msa1177620:intron 45.0%
TGTGAGATCTCCTGAGAGTT+GGG + chr8_1:10013070-10013089 None:intergenic 45.0%
ATGTGAGATCTCCTGAGAGT+TGG + chr8_1:10013071-10013090 None:intergenic 45.0%
TTGTGAATTTGCGGATCCAG+CGG - chr8_1:10013110-10013129 Msa1177620:intron 45.0%
! GATCCAGCGGGATCTTTTAA+AGG - chr8_1:10013123-10013142 Msa1177620:intron 45.0%
! AGTCCTTTAAAAGATCCCGC+TGG + chr8_1:10013129-10013148 None:intergenic 45.0%
CTAAGCAGTTAAGGCTGCTT+AGG + chr8_1:10013416-10013435 None:intergenic 45.0%
GTTACACGGCTAAGCAGTTA+AGG + chr8_1:10013425-10013444 None:intergenic 45.0%
TGCTTAGCCGTGTAACCTAA+AGG - chr8_1:10013429-10013448 Msa1177620:intron 45.0%
GCTGTATCTTGTCCTTTCCT+TGG - chr8_1:10013608-10013627 Msa1177620:intron 45.0%
CCAGAAAGAATAGGTCTCCA+AGG + chr8_1:10013628-10013647 None:intergenic 45.0%
CCTTGGAGACCTATTCTTTC+TGG - chr8_1:10013625-10013644 Msa1177620:intron 45.0%
! CCACATGCCTGAAAGTTTTC+AGG + chr8_1:10014061-10014080 None:intergenic 45.0%
CCTGAAAACTTTCAGGCATG+TGG - chr8_1:10014058-10014077 Msa1177620:CDS 45.0%
!! GCAAATTCTAAGGCCTAGCA+AGG - chr8_1:10014115-10014134 Msa1177620:CDS 45.0%
GCCAGGCTCAAACGTTTGTT+GGG - chr8_1:10012128-10012147 Msa1177620:CDS 50.0%
ACCCAACAAACGTTTGAGCC+TGG + chr8_1:10012132-10012151 None:intergenic 50.0%
ATTCACGACGAGTGTGTGCA+AGG + chr8_1:10012426-10012445 None:intergenic 50.0%
AACACTTTGCTCCAGCAGTG+TGG - chr8_1:10012594-10012613 Msa1177620:CDS 50.0%
TGTGAATTTGCGGATCCAGC+GGG - chr8_1:10013111-10013130 Msa1177620:intron 50.0%
CTTTCAGGCATGTGGAGCAT+TGG - chr8_1:10014066-10014085 Msa1177620:CDS 50.0%
GGCCAGGCTCAAACGTTTGT+TGG - chr8_1:10012127-10012146 Msa1177620:CDS 55.0%
GGTTATGATTGGGGGGTTGC+TGG - chr8_1:10012149-10012168 Msa1177620:CDS 55.0%
TATGATTGGGGGGTTGCTGG+AGG - chr8_1:10012152-10012171 Msa1177620:CDS 55.0%
TCGGTGTAAATACACCCGCG+AGG - chr8_1:10012292-10012311 Msa1177620:intron 55.0%
CGGTGTAAATACACCCGCGA+GGG - chr8_1:10012293-10012312 Msa1177620:intron 55.0%
TAAATACACCCGCGAGGGTG+TGG - chr8_1:10012298-10012317 Msa1177620:intron 55.0%
AAACCATTCCACACCCTCGC+GGG + chr8_1:10012309-10012328 None:intergenic 55.0%
CAAACCATTCCACACCCTCG+CGG + chr8_1:10012310-10012329 None:intergenic 55.0%
! CGAGGGTGTGGAATGGTTTG+TGG - chr8_1:10012310-10012329 Msa1177620:intron 55.0%
!! TTTCAGGTTGTGGGGGTTGC+TGG - chr8_1:10012346-10012365 Msa1177620:intron 55.0%
TTGCTCCAGCAGTGTGGTTC+AGG - chr8_1:10012600-10012619 Msa1177620:CDS 55.0%
TTGCTCCTGAACCACACTGC+TGG + chr8_1:10012608-10012627 None:intergenic 55.0%
ACTGCATCCCGCTTTGCAGT+CGG - chr8_1:10012711-10012730 Msa1177620:intron 55.0%
TACGTCTCCGACTGCAAAGC+GGG + chr8_1:10012721-10012740 None:intergenic 55.0%
CTACGTCTCCGACTGCAAAG+CGG + chr8_1:10012722-10012741 None:intergenic 55.0%
GAGATCTCCTGAGAGTTGGG+AGG + chr8_1:10013067-10013086 None:intergenic 55.0%
CGCTTTGCAGTCGGAGACGT+AGG - chr8_1:10012720-10012739 Msa1177620:intron 60.0%
GATAAGTGGGCAGGTCGGCC+AGG - chr8_1:10012111-10012130 Msa1177620:CDS 65.0%
! ACACCCGCGAGGGTGTGGAA+TGG - chr8_1:10012303-10012322 Msa1177620:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 10011273 10014481 10011273 ID=Msa1177620;Name=Msa1177620
chr8_1 mRNA 10011273 10014481 10011273 ID=Msa1177620-mRNA-1;Parent=Msa1177620;Name=Msa1177620-mRNA-1;_AED=0.23;_eAED=0.23;_QI=153|1|1|1|1|1|5|294|282
chr8_1 exon 10011273 10011681 10011273 ID=Msa1177620-mRNA-1:exon:3477;Parent=Msa1177620-mRNA-1
chr8_1 exon 10011769 10011820 10011769 ID=Msa1177620-mRNA-1:exon:3476;Parent=Msa1177620-mRNA-1
chr8_1 exon 10012108 10012174 10012108 ID=Msa1177620-mRNA-1:exon:3475;Parent=Msa1177620-mRNA-1
chr8_1 exon 10012521 10012675 10012521 ID=Msa1177620-mRNA-1:exon:3474;Parent=Msa1177620-mRNA-1
chr8_1 exon 10013869 10014481 10013869 ID=Msa1177620-mRNA-1:exon:3473;Parent=Msa1177620-mRNA-1
chr8_1 five_prime_UTR 10014329 10014481 10014329 ID=Msa1177620-mRNA-1:five_prime_utr;Parent=Msa1177620-mRNA-1
chr8_1 CDS 10013869 10014328 10013869 ID=Msa1177620-mRNA-1:cds;Parent=Msa1177620-mRNA-1
chr8_1 CDS 10012521 10012675 10012521 ID=Msa1177620-mRNA-1:cds;Parent=Msa1177620-mRNA-1
chr8_1 CDS 10012108 10012174 10012108 ID=Msa1177620-mRNA-1:cds;Parent=Msa1177620-mRNA-1
chr8_1 CDS 10011769 10011820 10011769 ID=Msa1177620-mRNA-1:cds;Parent=Msa1177620-mRNA-1
chr8_1 CDS 10011567 10011681 10011567 ID=Msa1177620-mRNA-1:cds;Parent=Msa1177620-mRNA-1
chr8_1 three_prime_UTR 10011273 10011566 10011273 ID=Msa1177620-mRNA-1:three_prime_utr;Parent=Msa1177620-mRNA-1
Gene Sequence

>Msa1177620

ATGTGGCTAGCATTAATTAGAAACTTAGATATTTATGTAAAATTTAAATACAAGGCAGGTGGCAACCGTTTGTTCTTAGATTCTAACAAAATCATTCTAACGTTTGTTCTCTTGTTTAGTTTCATGGCATTGTCTGCTATATCTTCCATTAGTCACAACCATCACCACACTTCTTTGTTCTTTGCACCAAAACAACATCATCACCACAATAACACAAAAATCCACAGGTTTCAAATTCAATGCAATGGAACAAACCAAAATCAAGAGTCACAACAACAGAACAATGTATTTCTTAAGGTTGCATGGTATAGTTCTGAGCTTCTAGGCATTGCTGCTTCTGCTTTCCGTTCTCCATCTGTTGAAGAAGAAGCTTCTCCACAGAGACTTCTTCAAACCATTGATCGTGCTTCTGTTGTAGACACAATCAAACAAGACTTCCAAAGATCTTATTTTGTCACAGGAGATCTCACATTGAATGCATATGAAGAGGATTGTGAATTTGCGGATCCAGCGGGATCTTTTAAAGGACTTCAACGTTTCAAAAGGAACTGCACTAATTTTGGATCACTTCTGGAGAAGTCAACTATGAATCTTATGAAGTGGGAAGATTTTGAGGATAAAGGAATTGGTCACTGGCGATTCAGCTGTATCTTGTCCTTTCCTTGGAGACCTATTCTTTCTGCAACTGGGTACACAGAATACTATTTTGATACACAATCAGGAAAAATATGCAGGCATGTGGAGCATTGGAATGTGCCAAAAATGGCTTTGTTCAAGCAAATTCTAAGGCCTAGCAAGGGATTTAGCTTAAAAGATTATGTGACTAGGTGGTTGAAGTTGTCCAAGTGA

Protein sequence

>Msa1177620

MWLALIRNLDIYVKFKYKAGGNRLFLDSNKIILTFVLLFSFMALSAISSISHNHHHTSLFFAPKQHHHHNNTKIHRFQIQCNGTNQNQESQQQNNVFLKVAWYSSELLGIAASAFRSPSVEEEASPQRLLQTIDRASVVDTIKQDFQRSYFVTGDLTLNAYEEDCEFADPAGSFKGLQRFKRNCTNFGSLLEKSTMNLMKWEDFEDKGIGHWRFSCILSFPWRPILSATGYTEYYFDTQSGKICRHVEHWNVPKMALFKQILRPSKGFSLKDYVTRWLKLSK*