AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0649310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649310 MtrunA17_Chr4g0041121 96.774 341 10 1 1 340 1 341 0.0 676
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649310 AT2G31040.1 62.824 347 104 7 1 332 1 337 1.43e-150 427

Find 100 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGACCAAAGACTAAATT+TGG 0.119809 4_3:+55916714 Msa0649310:exon
TACACTTCTCTTACAATAAT+TGG 0.161970 4_3:-55914628 None:intergenic
AGCTTTGGTGCCGGCTTTCT+TGG 0.187374 4_3:+55915731 Msa0649310:intron
GAAACCCCAAATTTAGTCTT+TGG 0.236449 4_3:-55916720 None:intergenic
AGTCTTTGGTCGATATATTT+AGG 0.241504 4_3:-55916706 None:intergenic
TGCCGGCTTTCTTGGTTCTT+TGG 0.245062 4_3:+55915739 Msa0649310:CDS
AGGATTCTTGTTCCAGAATA+TGG 0.258629 4_3:+55916578 Msa0649310:intron
AAGTGCATAATTCCATATTC+TGG 0.258872 4_3:-55916590 None:intergenic
TGTAAACAGGAAGTGCCTTC+TGG 0.265849 4_3:+55914393 Msa0649310:intron
TAAGATAGTGAGAAACAAAA+TGG 0.274507 4_3:+55912847 Msa0649310:exon
ATGTGATGCTTCGGGAATTA+AGG 0.317546 4_3:+55915130 Msa0649310:CDS
CACCAAGCTTCGTAAGTATT+GGG 0.317586 4_3:+55913045 Msa0649310:CDS
GATTCATATGAATGGTATAT+TGG 0.324237 4_3:-55912759 None:intergenic
CATATCTATCTATAAATTAC+TGG 0.328264 4_3:+55912781 Msa0649310:five_prime_UTR
AATTGGGCAGCCAAGATTAC+TGG 0.331100 4_3:+55916264 Msa0649310:CDS
ATAGCAGCCCTTGCACCGTT+TGG 0.350509 4_3:-55915803 None:intergenic
TTTCTCACTATCTTATGTTC+TGG 0.353430 4_3:-55912839 None:intergenic
ATCGACCAAAGACTAAATTT+GGG 0.357427 4_3:+55916715 Msa0649310:exon
AGAATAACCTTTGTTTGTCT+TGG 0.372585 4_3:-55912953 None:intergenic
GAATAACCTTTGTTTGTCTT+GGG 0.373162 4_3:-55912952 None:intergenic
ACCTTTGTTTGTCTTGGGTT+TGG 0.377459 4_3:-55912947 None:intergenic
ATTACTGGTTCCTGTTGTAT+TGG 0.379401 4_3:+55916279 Msa0649310:CDS
ATACAGGGAGCAGTATATTA+AGG 0.383424 4_3:+55915188 Msa0649310:CDS
GTTAATTGCAGGGGAGCAAT+TGG 0.387442 4_3:+55916247 Msa0649310:intron
TAGCAGCCCTTGCACCGTTT+GGG 0.403323 4_3:-55915802 None:intergenic
TATTGAGCAGCCAATACTTC+GGG 0.403419 4_3:-55915168 None:intergenic
GTAAACAGGAAGTGCCTTCT+GGG 0.406227 4_3:+55914394 Msa0649310:intron
TAGCTTCTGATGATTATTTG+TGG 0.407042 4_3:+55913089 Msa0649310:CDS
CCACCAAGCTTCGTAAGTAT+TGG 0.407069 4_3:+55913044 Msa0649310:CDS
ACTGCCGTCAGTTGCAGCTT+TGG 0.407182 4_3:-55914920 None:intergenic
TTTGAAGGAGAAGATTGTTC+AGG 0.408297 4_3:-55913154 None:intergenic
TCATCAGAAGCTAAAGGGTC+AGG 0.410342 4_3:-55913079 None:intergenic
ACCTACAGGATGTGATGCTT+CGG 0.410812 4_3:+55915121 Msa0649310:intron
AAGTATTGGCTGCTCAATAC+AGG 0.415220 4_3:+55915172 Msa0649310:CDS
TCTATTTGCTGCTGTACAAC+AGG 0.415950 4_3:-55914601 None:intergenic
CAAGCGCTTACATTGGGTAT+AGG 0.428081 4_3:+55915359 Msa0649310:CDS
TTACGAAGCTTGGTGGTTGT+TGG 0.430101 4_3:-55913037 None:intergenic
CATACCAGTAGACCATTTCA+TGG 0.443885 4_3:-55912990 None:intergenic
ACAACAGGAACCAGTAATCT+TGG 0.444377 4_3:-55916274 None:intergenic
TTTGGCGTATATCCGCATGC+TGG 0.445119 4_3:+55915757 Msa0649310:CDS
CGAAGCTTGGTGGTTGTTGG+AGG 0.451253 4_3:-55913034 None:intergenic
TGGTTATGATTTATAATCGA+TGG 0.453315 4_3:+55916299 Msa0649310:CDS
AATAATCATCAGAAGCTAAA+GGG 0.460622 4_3:-55913084 None:intergenic
ACCTACCTAGCTGCAATCTC+AGG 0.464426 4_3:-55915419 None:intergenic
AAAGTGACAGCAAGAGAGTA+AGG 0.470284 4_3:+55914848 Msa0649310:CDS
CCTACAGGATGTGATGCTTC+GGG 0.470569 4_3:+55915122 Msa0649310:intron
TGAACAATCTTCTCCTTCAA+AGG 0.475235 4_3:+55913156 Msa0649310:CDS
TAAATCATAACCAATACAAC+AGG 0.476198 4_3:-55916289 None:intergenic
TATTCCATTTGTCTTGCTCA+CGG 0.492378 4_3:-55914891 None:intergenic
CACTAAACCCAAACGGTGCA+AGG 0.494494 4_3:+55915795 Msa0649310:CDS
AAACCCATGAAATGGTCTAC+TGG 0.495036 4_3:+55912986 Msa0649310:CDS
AAATAATCATCAGAAGCTAA+AGG 0.495271 4_3:-55913085 None:intergenic
ATGTTCTGGTTCCTGTGTTG+TGG 0.495930 4_3:-55912825 None:intergenic
CACGCCGTGAGCAAGACAAA+TGG 0.501285 4_3:+55914887 Msa0649310:CDS
CATGAAATGGTCTACTGGTA+TGG 0.501507 4_3:+55912991 Msa0649310:CDS
TGAATCATCCTTTCAAAATG+AGG 0.504403 4_3:-55913127 None:intergenic
AGGTTGCAAGCGCTTACATT+GGG 0.506487 4_3:+55915353 Msa0649310:CDS
GGTGATTACTGTTGCATCAA+AGG 0.508229 4_3:+55916682 Msa0649310:CDS
ACCCCAATACTTACGAAGCT+TGG 0.512109 4_3:-55913047 None:intergenic
TTAATTGCAGGGGAGCAATT+GGG 0.514999 4_3:+55916248 Msa0649310:intron
CCAATACTTACGAAGCTTGG+TGG 0.515865 4_3:-55913044 None:intergenic
TTGGCGTATATCCGCATGCT+GGG 0.516325 4_3:+55915758 Msa0649310:CDS
ATAGATATGATTCATATGAA+TGG 0.516400 4_3:-55912767 None:intergenic
TGGTCTACTGGTATGGCTCC+TGG 0.518814 4_3:+55912998 Msa0649310:CDS
GAATTGATACCAATGCTAGT+TGG 0.520283 4_3:+55916614 Msa0649310:CDS
CTTCGTAAGTATTGGGGTGG+TGG 0.523937 4_3:+55913052 Msa0649310:CDS
AAGATAGTGAGAAACAAAAT+GGG 0.533275 4_3:+55912848 Msa0649310:exon
ATAGAGTCATGAGCCTCGAC+AGG 0.533765 4_3:+55914430 Msa0649310:CDS
GGAGGACCGCCGTAGTCACC+AGG 0.534888 4_3:-55913016 None:intergenic
TCGTGAAAATCCCGAAGTAT+TGG 0.538551 4_3:+55915158 Msa0649310:CDS
CGCCAAAGAACCAAGAAAGC+CGG 0.543254 4_3:-55915741 None:intergenic
ACATTGGGTATAGGTGGCGT+TGG 0.545773 4_3:+55915368 Msa0649310:CDS
GAGGTTGCAAGCGCTTACAT+TGG 0.551750 4_3:+55915352 Msa0649310:CDS
GTATTGAGCAGCCAATACTT+CGG 0.557898 4_3:-55915169 None:intergenic
GAAGGAGAAGATTGTTCAGG+TGG 0.562283 4_3:-55913151 None:intergenic
AAGAATCTTAATTACAACAA+GGG 0.584467 4_3:+55916784 Msa0649310:three_prime_UTR
CCGCATGCTGGGAAGTAGCA+TGG 0.585601 4_3:+55915769 Msa0649310:CDS
ATACCAGTAGACCATTTCAT+GGG 0.589861 4_3:-55912989 None:intergenic
TTGTCTTGCTCACGGCGTGT+TGG 0.591493 4_3:-55914883 None:intergenic
GATGATGAATCTTGTGACAT+TGG 0.594108 4_3:-55912911 None:intergenic
CATCAGAAGCTAAAGGGTCA+GGG 0.595141 4_3:-55913078 None:intergenic
AGTATTGGCTGCTCAATACA+GGG 0.596425 4_3:+55915173 Msa0649310:CDS
GCTACCAAAGCTGCAACTGA+CGG 0.601209 4_3:+55914916 Msa0649310:CDS
ACTAAACCCAAACGGTGCAA+GGG 0.602346 4_3:+55915796 Msa0649310:CDS
GGTATGGCTCCTGGTGACTA+CGG 0.609219 4_3:+55913007 Msa0649310:CDS
ATGGACTCACTAAACCCAAA+CGG 0.611635 4_3:+55915788 Msa0649310:CDS
ACCAAACCCAAGACAAACAA+AGG 0.615615 4_3:+55912946 Msa0649310:CDS
TCGACCAAAGACTAAATTTG+GGG 0.617007 4_3:+55916716 Msa0649310:exon
CCATGCTACTTCCCAGCATG+CGG 0.623983 4_3:-55915769 None:intergenic
GTGACAGCAAGAGAGTAAGG+TGG 0.625416 4_3:+55914851 Msa0649310:CDS
GCGCTTACATTGGGTATAGG+TGG 0.629044 4_3:+55915362 Msa0649310:CDS
ATTCTCCTGAGATTGCAGCT+AGG 0.629223 4_3:+55915414 Msa0649310:CDS
TAACGTCATAAATACACTAG+AGG 0.631922 4_3:-55916907 None:intergenic
ACCAAGCTTCGTAAGTATTG+GGG 0.639162 4_3:+55913046 Msa0649310:CDS
TTGTAGAGCGAGACCTGTCG+AGG 0.640320 4_3:-55914443 None:intergenic
TTTAAGCTTAGAAACCCAGA+AGG 0.648797 4_3:-55914408 None:intergenic
ATGGCTCCTGGTGACTACGG+CGG 0.657904 4_3:+55913010 Msa0649310:CDS
AAGCTTCGTAAGTATTGGGG+TGG 0.659164 4_3:+55913049 Msa0649310:CDS
TAAGAATCTTAATTACAACA+AGG 0.662571 4_3:+55916783 Msa0649310:three_prime_UTR
TCAATACATAGCCACAACAC+AGG 0.678048 4_3:+55912814 Msa0649310:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATACAGAAAATAAATT+GGG - chr4_3:55913684-55913703 None:intergenic 10.0%
!! TTATAATACAGAAAATAAAT+TGG - chr4_3:55913685-55913704 None:intergenic 10.0%
!! AATATCAATATTACTTAAAA+GGG - chr4_3:55913726-55913745 None:intergenic 10.0%
!! AAATATCAATATTACTTAAA+AGG - chr4_3:55913727-55913746 None:intergenic 10.0%
!!! TCAAGAAATTTTAATATAAT+TGG + chr4_3:55914179-55914198 Msa0649310:intron 10.0%
!!! AATATTTTTTTTTTGTAAAC+AGG + chr4_3:55914380-55914399 Msa0649310:intron 10.0%
!! CATTCTTATATATTACATAT+AGG - chr4_3:55913657-55913676 None:intergenic 15.0%
!! GTATTATAATTAGATTTGAT+TGG + chr4_3:55913696-55913715 Msa0649310:intron 15.0%
!! ATTGAAGTAAAAGTAAAATT+TGG - chr4_3:55913785-55913804 None:intergenic 15.0%
!!! ATATATTTTTCAGCTTATAT+AGG + chr4_3:55915007-55915026 Msa0649310:intron 15.0%
!!! TTAACTATATTTGATAGTAT+AGG - chr4_3:55915501-55915520 None:intergenic 15.0%
!! AAATAGTTATTAAACTCTTT+CGG - chr4_3:55915942-55915961 None:intergenic 15.0%
!! TGTCTATATAAATTTAATGT+AGG + chr4_3:55916061-55916080 Msa0649310:intron 15.0%
!! GTCTATATAAATTTAATGTA+GGG + chr4_3:55916062-55916081 Msa0649310:intron 15.0%
!! AATTACTATTCTATTAATGA+AGG + chr4_3:55916357-55916376 Msa0649310:intron 15.0%
!! TCAAATTTAATATATAAGAG+TGG + chr4_3:55916452-55916471 Msa0649310:intron 15.0%
!! TATTTAGACATTATTACAAA+AGG - chr4_3:55916833-55916852 None:intergenic 15.0%
!! ATAGATATGATTCATATGAA+TGG - chr4_3:55912770-55912789 None:intergenic 20.0%
!! CATATCTATCTATAAATTAC+TGG + chr4_3:55912781-55912800 Msa0649310:five_prime_UTR 20.0%
!! AAAAAAGTAAAAACCTTTGA+AGG - chr4_3:55913172-55913191 None:intergenic 20.0%
!! AATTCAGTATTTAGTAGAAA+TGG + chr4_3:55913883-55913902 Msa0649310:intron 20.0%
!! ATGATTATGTGAATTAAATC+TGG - chr4_3:55913926-55913945 None:intergenic 20.0%
!! CAATAGATATAGATATTAAG+AGG - chr4_3:55914014-55914033 None:intergenic 20.0%
!! ATATCTATTGAACACATTTA+TGG + chr4_3:55914024-55914043 Msa0649310:intron 20.0%
!! TATCTATTGAACACATTTAT+GGG + chr4_3:55914025-55914044 Msa0649310:intron 20.0%
!!! TTTTGTTTAATTCCATGAAT+TGG + chr4_3:55914347-55914366 Msa0649310:intron 20.0%
!! ATTAAATACTCAAAATCCAA+AGG - chr4_3:55914685-55914704 None:intergenic 20.0%
!!! ATTTTGAGTATTTAATTCAG+AGG + chr4_3:55914689-55914708 Msa0649310:intron 20.0%
!!! TTTTGAGTATTTAATTCAGA+GGG + chr4_3:55914690-55914709 Msa0649310:intron 20.0%
!! TAAAAAGATAAATGAACCTT+TGG - chr4_3:55914802-55914821 None:intergenic 20.0%
!!! TTAACTTGGTTATTTTGAAT+TGG + chr4_3:55915464-55915483 Msa0649310:intron 20.0%
!!! TACCTCTAAAGAATTTTTTA+AGG + chr4_3:55915666-55915685 Msa0649310:intron 20.0%
!! AACCTTAAAAAATTCTTTAG+AGG - chr4_3:55915671-55915690 None:intergenic 20.0%
!!! TGAAGTTTCTATTTTTTTCT+CGG + chr4_3:55915901-55915920 Msa0649310:intron 20.0%
!! TATATTATGGTAAAATATGC+TGG + chr4_3:55916036-55916055 Msa0649310:intron 20.0%
!! ATATTATGGTAAAATATGCT+GGG + chr4_3:55916037-55916056 Msa0649310:intron 20.0%
!! GTAACTCAGATTTAATAAAT+AGG + chr4_3:55916407-55916426 Msa0649310:intron 20.0%
!! TAAGAATCTTAATTACAACA+AGG + chr4_3:55916783-55916802 Msa0649310:three_prime_UTR 20.0%
!! AAGAATCTTAATTACAACAA+GGG + chr4_3:55916784-55916803 Msa0649310:three_prime_UTR 20.0%
! GATTCATATGAATGGTATAT+TGG - chr4_3:55912762-55912781 None:intergenic 25.0%
! TAAGATAGTGAGAAACAAAA+TGG + chr4_3:55912847-55912866 Msa0649310:exon 25.0%
! AAGATAGTGAGAAACAAAAT+GGG + chr4_3:55912848-55912867 Msa0649310:exon 25.0%
!!! CATTTCATGGGTTTTTTATT+GGG - chr4_3:55912980-55912999 None:intergenic 25.0%
! AATAATCATCAGAAGCTAAA+GGG - chr4_3:55913087-55913106 None:intergenic 25.0%
! AAATAATCATCAGAAGCTAA+AGG - chr4_3:55913088-55913107 None:intergenic 25.0%
!! ATTTTGTTCCTCATTTTGAA+AGG + chr4_3:55913119-55913138 Msa0649310:CDS 25.0%
!! ACATTCTATAATTTTCCATC+TGG + chr4_3:55913196-55913215 Msa0649310:intron 25.0%
!! CATTCTATAATTTTCCATCT+GGG + chr4_3:55913197-55913216 Msa0649310:intron 25.0%
!!! CTGTTTTGTTGGAATTATTA+TGG + chr4_3:55913236-55913255 Msa0649310:intron 25.0%
! GTTGGAATTATTATGGAATA+TGG + chr4_3:55913243-55913262 Msa0649310:intron 25.0%
!! TGTTACTTGATTATTGTGTT+TGG + chr4_3:55913450-55913469 Msa0649310:intron 25.0%
!! ATATTGATATTTGAGACCAT+TGG + chr4_3:55913735-55913754 Msa0649310:intron 25.0%
!! ATTCATTCCAATTTTCAGAT+AGG + chr4_3:55914093-55914112 Msa0649310:intron 25.0%
! GAATGATACTAAACAATAGA+TGG + chr4_3:55914121-55914140 Msa0649310:intron 25.0%
! TAAAATTTCTTGAGTCAACA+AGG - chr4_3:55914172-55914191 None:intergenic 25.0%
!!! GCTATCGATTATTTTTTTGA+AGG + chr4_3:55914310-55914329 Msa0649310:intron 25.0%
!!! TCGATTATTTTTTTGAAGGA+AGG + chr4_3:55914314-55914333 Msa0649310:intron 25.0%
! TTGATTTATGAACTGTAGTA+TGG + chr4_3:55914549-55914568 Msa0649310:intron 25.0%
! TACACTTCTCTTACAATAAT+TGG - chr4_3:55914631-55914650 None:intergenic 25.0%
! ATTAATCAGGGAAAAATCAA+AGG - chr4_3:55914658-55914677 None:intergenic 25.0%
! TCCAAAGGATATATTAATCA+GGG - chr4_3:55914670-55914689 None:intergenic 25.0%
! ATCCAAAGGATATATTAATC+AGG - chr4_3:55914671-55914690 None:intergenic 25.0%
!! TGAAAAACAAAAAAAGCACA+TGG + chr4_3:55914759-55914778 Msa0649310:intron 25.0%
! TTACAAATTTAATGTCTACC+AGG + chr4_3:55914819-55914838 Msa0649310:intron 25.0%
! GTATCTAATTTCTAACTTAC+TGG + chr4_3:55914984-55915003 Msa0649310:intron 25.0%
! TTATATAGGTGTATAACCTA+GGG + chr4_3:55915021-55915040 Msa0649310:intron 25.0%
! TGTTAATATTAACTACCTAC+AGG + chr4_3:55915107-55915126 Msa0649310:intron 25.0%
! TTCTGTTCCTAAACTTAATT+TGG + chr4_3:55915313-55915332 Msa0649310:intron 25.0%
! TGAAAAGCCAAATTAAGTTT+AGG - chr4_3:55915323-55915342 None:intergenic 25.0%
!!! TTCTTTCATGTTTTTAGCTT+TGG + chr4_3:55915716-55915735 Msa0649310:intron 25.0%
! ATATTATTCAAGATGTGAAC+AGG + chr4_3:55916007-55916026 Msa0649310:intron 25.0%
! TATTATTCAAGATGTGAACA+GGG + chr4_3:55916008-55916027 Msa0649310:intron 25.0%
! TATTATGGTAAAATATGCTG+GGG + chr4_3:55916038-55916057 Msa0649310:intron 25.0%
! GAAAAATGAAACAATGTTCA+TGG - chr4_3:55916181-55916200 None:intergenic 25.0%
! TAAATCATAACCAATACAAC+AGG - chr4_3:55916292-55916311 None:intergenic 25.0%
! TGGTTATGATTTATAATCGA+TGG + chr4_3:55916299-55916318 Msa0649310:CDS 25.0%
! ATAGGAATGAGAATTAAGAA+TGG + chr4_3:55916425-55916444 Msa0649310:intron 25.0%
!! TTAACCAATATTCTAGGTTT+TGG - chr4_3:55916519-55916538 None:intergenic 25.0%
TTTCTCACTATCTTATGTTC+TGG - chr4_3:55912842-55912861 None:intergenic 30.0%
! GAATAACCTTTGTTTGTCTT+GGG - chr4_3:55912955-55912974 None:intergenic 30.0%
! AGAATAACCTTTGTTTGTCT+TGG - chr4_3:55912956-55912975 None:intergenic 30.0%
!!! CCATTTCATGGGTTTTTTAT+TGG - chr4_3:55912981-55913000 None:intergenic 30.0%
CCAATAAAAAACCCATGAAA+TGG + chr4_3:55912978-55912997 Msa0649310:CDS 30.0%
TAGCTTCTGATGATTATTTG+TGG + chr4_3:55913089-55913108 Msa0649310:CDS 30.0%
TGAATCATCCTTTCAAAATG+AGG - chr4_3:55913130-55913149 None:intergenic 30.0%
ATTGATTGATGAATTGCTTG+TGG + chr4_3:55913278-55913297 Msa0649310:intron 30.0%
TTGATTGATGAATTGCTTGT+GGG + chr4_3:55913279-55913298 Msa0649310:intron 30.0%
ATGATGATTGTGTATGTACA+CGG + chr4_3:55913324-55913343 Msa0649310:intron 30.0%
! ATTTTACTCCTTTGTTCCAA+TGG - chr4_3:55913754-55913773 None:intergenic 30.0%
AAGAAAGACTAATAAACGCA+TGG - chr4_3:55913824-55913843 None:intergenic 30.0%
TTACATAATGATACTCTGTG+AGG + chr4_3:55913843-55913862 Msa0649310:intron 30.0%
!! AGATATTAAGAGGCATTTGA+TGG - chr4_3:55914004-55914023 None:intergenic 30.0%
! AACAGTTACTTTGTTTAGCA+TGG + chr4_3:55914065-55914084 Msa0649310:intron 30.0%
TCTGATTCCTATCTGAAAAT+TGG - chr4_3:55914103-55914122 None:intergenic 30.0%
! TGGTTTTTGATAGAACATCA+TGG + chr4_3:55914199-55914218 Msa0649310:intron 30.0%
TTTATGTCAGTACCAATTCA+TGG - chr4_3:55914362-55914381 None:intergenic 30.0%
TCCCTGATTAATATATCCTT+TGG + chr4_3:55914666-55914685 Msa0649310:intron 30.0%
!!! TTGTTGTGTTGTTTTTCCAA+AGG + chr4_3:55914783-55914802 Msa0649310:intron 30.0%
CTTATATAGGTGTATAACCT+AGG + chr4_3:55915020-55915039 Msa0649310:intron 30.0%
TTGGGTTCAAAAGTAAACTA+TGG - chr4_3:55915070-55915089 None:intergenic 30.0%
!! GTTTACTTTTGAACCCAAAA+TGG + chr4_3:55915072-55915091 Msa0649310:intron 30.0%
! AATCGTCAAGTTACCATTTT+GGG - chr4_3:55915088-55915107 None:intergenic 30.0%
AACAAAAACAAACCAGACAA+CGG - chr4_3:55915223-55915242 None:intergenic 30.0%
! ACTTCTACTACTGATTAACT+TGG + chr4_3:55915450-55915469 Msa0649310:intron 30.0%
! TATTTGATAGTATAGGTAGC+AGG - chr4_3:55915494-55915513 None:intergenic 30.0%
ATTTATCCAATATCCCTCAA+TGG - chr4_3:55915575-55915594 None:intergenic 30.0%
GAACAGGGAGAAATATATTA+TGG + chr4_3:55916023-55916042 Msa0649310:intron 30.0%
TTCTCCAAAACCTAGAATAT+TGG + chr4_3:55916512-55916531 Msa0649310:intron 30.0%
! CCTAGAATATTGGTTAAACT+CGG + chr4_3:55916522-55916541 Msa0649310:intron 30.0%
AAGTGCATAATTCCATATTC+TGG - chr4_3:55916593-55916612 None:intergenic 30.0%
AGTCTTTGGTCGATATATTT+AGG - chr4_3:55916709-55916728 None:intergenic 30.0%
TATCGACCAAAGACTAAATT+TGG + chr4_3:55916714-55916733 Msa0649310:exon 30.0%
ATCGACCAAAGACTAAATTT+GGG + chr4_3:55916715-55916734 Msa0649310:exon 30.0%
TAACGTCATAAATACACTAG+AGG - chr4_3:55916910-55916929 None:intergenic 30.0%
GATGATGAATCTTGTGACAT+TGG - chr4_3:55912914-55912933 None:intergenic 35.0%
ATACCAGTAGACCATTTCAT+GGG - chr4_3:55912992-55913011 None:intergenic 35.0%
TTTGAAGGAGAAGATTGTTC+AGG - chr4_3:55913157-55913176 None:intergenic 35.0%
TGAACAATCTTCTCCTTCAA+AGG + chr4_3:55913156-55913175 Msa0649310:CDS 35.0%
GAAAGGGATTAGGATTAAGT+TGG - chr4_3:55913558-55913577 None:intergenic 35.0%
! GTTACTTGTTAGGCTTGAAA+GGG - chr4_3:55913574-55913593 None:intergenic 35.0%
! TGTTACTTGTTAGGCTTGAA+AGG - chr4_3:55913575-55913594 None:intergenic 35.0%
! ATTTGAGACCATTGGAACAA+AGG + chr4_3:55913743-55913762 Msa0649310:intron 35.0%
TAATGATACTCTGTGAGGAA+AGG + chr4_3:55913848-55913867 Msa0649310:intron 35.0%
ATTGAACACATTTATGGGTG+TGG + chr4_3:55914030-55914049 Msa0649310:intron 35.0%
TTTATGGGTGTGGAAATGTA+TGG + chr4_3:55914040-55914059 Msa0649310:intron 35.0%
! CAACATTTTTGTCACAATGC+GGG - chr4_3:55914249-55914268 None:intergenic 35.0%
! CCAACATTTTTGTCACAATG+CGG - chr4_3:55914250-55914269 None:intergenic 35.0%
ACTCAAGATATCTTGGTGAA+TGG + chr4_3:55914288-55914307 Msa0649310:intron 35.0%
TTTAAGCTTAGAAACCCAGA+AGG - chr4_3:55914411-55914430 None:intergenic 35.0%
TATTCCATTTGTCTTGCTCA+CGG - chr4_3:55914894-55914913 None:intergenic 35.0%
! CAATCGTCAAGTTACCATTT+TGG - chr4_3:55915089-55915108 None:intergenic 35.0%
ATACAGGGAGCAGTATATTA+AGG + chr4_3:55915188-55915207 Msa0649310:CDS 35.0%
CAATGTCACAATGAATGAAG+AGG - chr4_3:55915271-55915290 None:intergenic 35.0%
! TGGCTTTTCAGTTAAAGAAG+AGG + chr4_3:55915333-55915352 Msa0649310:intron 35.0%
ATGTTTCCATTGAGGGATAT+TGG + chr4_3:55915566-55915585 Msa0649310:intron 35.0%
!! TCATTTTTCACGTTGTTCGT+TGG + chr4_3:55916192-55916211 Msa0649310:intron 35.0%
AACTTGTGGATGTTAATTGC+AGG + chr4_3:55916236-55916255 Msa0649310:intron 35.0%
ACTTGTGGATGTTAATTGCA+GGG + chr4_3:55916237-55916256 Msa0649310:intron 35.0%
!! ATTACTGGTTCCTGTTGTAT+TGG + chr4_3:55916279-55916298 Msa0649310:CDS 35.0%
GAGTGAATGAGAGTTAAGAA+TGG + chr4_3:55916385-55916404 Msa0649310:intron 35.0%
!!! GTTTTGGAGAAACTAAAGCT+AGG - chr4_3:55916503-55916522 None:intergenic 35.0%
CCGAGTTTAACCAATATTCT+AGG - chr4_3:55916525-55916544 None:intergenic 35.0%
!!! GGTGTTTTAACTGCTTAACA+AGG + chr4_3:55916543-55916562 Msa0649310:intron 35.0%
AGGATTCTTGTTCCAGAATA+TGG + chr4_3:55916578-55916597 Msa0649310:intron 35.0%
GAATTGATACCAATGCTAGT+TGG + chr4_3:55916614-55916633 Msa0649310:CDS 35.0%
GTGAAAAAACCAACTAGCAT+TGG - chr4_3:55916626-55916645 None:intergenic 35.0%
! AACTTTTGCACAAGCTATAG+AGG + chr4_3:55916658-55916677 Msa0649310:CDS 35.0%
TCGACCAAAGACTAAATTTG+GGG + chr4_3:55916716-55916735 Msa0649310:exon 35.0%
! GAAACCCCAAATTTAGTCTT+TGG - chr4_3:55916723-55916742 None:intergenic 35.0%
TCAATACATAGCCACAACAC+AGG + chr4_3:55912814-55912833 Msa0649310:five_prime_UTR 40.0%
ACCAAACCCAAGACAAACAA+AGG + chr4_3:55912946-55912965 Msa0649310:CDS 40.0%
! ACCTTTGTTTGTCTTGGGTT+TGG - chr4_3:55912950-55912969 None:intergenic 40.0%
AAACCCATGAAATGGTCTAC+TGG + chr4_3:55912986-55913005 Msa0649310:CDS 40.0%
CATACCAGTAGACCATTTCA+TGG - chr4_3:55912993-55913012 None:intergenic 40.0%
CATGAAATGGTCTACTGGTA+TGG + chr4_3:55912991-55913010 Msa0649310:CDS 40.0%
CACCAAGCTTCGTAAGTATT+GGG + chr4_3:55913045-55913064 Msa0649310:CDS 40.0%
! ACCAAGCTTCGTAAGTATTG+GGG + chr4_3:55913046-55913065 Msa0649310:CDS 40.0%
!!! TTGAAGTGGTGCTGTTTTGT+TGG + chr4_3:55913225-55913244 Msa0649310:intron 40.0%
TGTTAGGCTTGAAAGGGATT+AGG - chr4_3:55913568-55913587 None:intergenic 40.0%
! CTCAGTGCTTGTTACTTGTT+AGG - chr4_3:55913584-55913603 None:intergenic 40.0%
! TTTTTGTCACAATGCGGGTT+TGG - chr4_3:55914244-55914263 None:intergenic 40.0%
CCGCATTGTGACAAAAATGT+TGG + chr4_3:55914247-55914266 Msa0649310:intron 40.0%
! GTGACAAAAATGTTGGTTGC+TGG + chr4_3:55914254-55914273 Msa0649310:intron 40.0%
! AAAATGTTGGTTGCTGGTAG+TGG + chr4_3:55914260-55914279 Msa0649310:intron 40.0%
! TCTATTTGCTGCTGTACAAC+AGG - chr4_3:55914604-55914623 None:intergenic 40.0%
AAAGTGACAGCAAGAGAGTA+AGG + chr4_3:55914848-55914867 Msa0649310:CDS 40.0%
TATAGGTGTATAACCTAGGG+CGG + chr4_3:55915024-55915043 Msa0649310:intron 40.0%
ATGTGATGCTTCGGGAATTA+AGG + chr4_3:55915130-55915149 Msa0649310:CDS 40.0%
TCGTGAAAATCCCGAAGTAT+TGG + chr4_3:55915158-55915177 Msa0649310:CDS 40.0%
TATTGAGCAGCCAATACTTC+GGG - chr4_3:55915171-55915190 None:intergenic 40.0%
GTATTGAGCAGCCAATACTT+CGG - chr4_3:55915172-55915191 None:intergenic 40.0%
!! AAGTATTGGCTGCTCAATAC+AGG + chr4_3:55915172-55915191 Msa0649310:CDS 40.0%
!! AGTATTGGCTGCTCAATACA+GGG + chr4_3:55915173-55915192 Msa0649310:CDS 40.0%
TCAGTGTCATGTTTCCATTG+AGG + chr4_3:55915558-55915577 Msa0649310:intron 40.0%
CAGTGTCATGTTTCCATTGA+GGG + chr4_3:55915559-55915578 Msa0649310:intron 40.0%
!!! CATGTTTTTAGCTTTGGTGC+CGG + chr4_3:55915722-55915741 Msa0649310:intron 40.0%
ATGGACTCACTAAACCCAAA+CGG + chr4_3:55915788-55915807 Msa0649310:CDS 40.0%
CACATGTGAGAACACTTGTT+AGG + chr4_3:55916129-55916148 Msa0649310:intron 40.0%
TTCGTTGGCATAGATAACAG+AGG + chr4_3:55916207-55916226 Msa0649310:intron 40.0%
AACAGAGGCTTAACAACTTG+TGG + chr4_3:55916222-55916241 Msa0649310:intron 40.0%
CTTGTGGATGTTAATTGCAG+GGG + chr4_3:55916238-55916257 Msa0649310:intron 40.0%
TTAATTGCAGGGGAGCAATT+GGG + chr4_3:55916248-55916267 Msa0649310:intron 40.0%
ACAACAGGAACCAGTAATCT+TGG - chr4_3:55916277-55916296 None:intergenic 40.0%
! GTCCTCTTTTGATATGCGAT+TGG + chr4_3:55916331-55916350 Msa0649310:intron 40.0%
CTCCAATCGCATATCAAAAG+AGG - chr4_3:55916336-55916355 None:intergenic 40.0%
! TAACAAGGCTGTTTCAATGC+AGG + chr4_3:55916558-55916577 Msa0649310:intron 40.0%
! TTTTGCACAAGCTATAGAGG+AGG + chr4_3:55916661-55916680 Msa0649310:CDS 40.0%
GGTGATTACTGTTGCATCAA+AGG + chr4_3:55916682-55916701 Msa0649310:CDS 40.0%
! CATGTGTTGTCACTTCAAAG+AGG - chr4_3:55916872-55916891 None:intergenic 40.0%
!! ATGTTCTGGTTCCTGTGTTG+TGG - chr4_3:55912828-55912847 None:intergenic 45.0%
! TTACGAAGCTTGGTGGTTGT+TGG - chr4_3:55913040-55913059 None:intergenic 45.0%
CCAATACTTACGAAGCTTGG+TGG - chr4_3:55913047-55913066 None:intergenic 45.0%
CCACCAAGCTTCGTAAGTAT+TGG + chr4_3:55913044-55913063 Msa0649310:CDS 45.0%
ACCCCAATACTTACGAAGCT+TGG - chr4_3:55913050-55913069 None:intergenic 45.0%
!! AAGCTTCGTAAGTATTGGGG+TGG + chr4_3:55913049-55913068 Msa0649310:CDS 45.0%
CATCAGAAGCTAAAGGGTCA+GGG - chr4_3:55913081-55913100 None:intergenic 45.0%
TCATCAGAAGCTAAAGGGTC+AGG - chr4_3:55913082-55913101 None:intergenic 45.0%
GAAGGAGAAGATTGTTCAGG+TGG - chr4_3:55913154-55913173 None:intergenic 45.0%
!! CACTTTCGATCAGAAGTGTC+AGG + chr4_3:55913413-55913432 Msa0649310:intron 45.0%
! ACAATGCGGGTTTGGTTCAA+TGG - chr4_3:55914236-55914255 None:intergenic 45.0%
GGTGGTGACTCAAGATATCT+TGG + chr4_3:55914281-55914300 Msa0649310:intron 45.0%
!! TGTAAACAGGAAGTGCCTTC+TGG + chr4_3:55914393-55914412 Msa0649310:intron 45.0%
!! GTAAACAGGAAGTGCCTTCT+GGG + chr4_3:55914394-55914413 Msa0649310:intron 45.0%
ACCTACAGGATGTGATGCTT+CGG + chr4_3:55915121-55915140 Msa0649310:intron 45.0%
AGGTTGCAAGCGCTTACATT+GGG + chr4_3:55915353-55915372 Msa0649310:CDS 45.0%
CAAGCGCTTACATTGGGTAT+AGG + chr4_3:55915359-55915378 Msa0649310:CDS 45.0%
ATTCTCCTGAGATTGCAGCT+AGG + chr4_3:55915414-55915433 Msa0649310:CDS 45.0%
ACTAAACCCAAACGGTGCAA+GGG + chr4_3:55915796-55915815 Msa0649310:CDS 45.0%
GTTAATTGCAGGGGAGCAAT+TGG + chr4_3:55916247-55916266 Msa0649310:intron 45.0%
AATTGGGCAGCCAAGATTAC+TGG + chr4_3:55916264-55916283 Msa0649310:CDS 45.0%
!! CTTCGTAAGTATTGGGGTGG+TGG + chr4_3:55913052-55913071 Msa0649310:CDS 50.0%
CCACTTCAAACACACCCAGA+TGG - chr4_3:55913214-55913233 None:intergenic 50.0%
CCATCTGGGTGTGTTTGAAG+TGG + chr4_3:55913211-55913230 Msa0649310:intron 50.0%
!! ATGTTGGTTGCTGGTAGTGG+TGG + chr4_3:55914263-55914282 Msa0649310:intron 50.0%
ATAGAGTCATGAGCCTCGAC+AGG + chr4_3:55914430-55914449 Msa0649310:CDS 50.0%
GTGACAGCAAGAGAGTAAGG+TGG + chr4_3:55914851-55914870 Msa0649310:CDS 50.0%
GCTACCAAAGCTGCAACTGA+CGG + chr4_3:55914916-55914935 Msa0649310:CDS 50.0%
TGTATAACCTAGGGCGGTGT+AGG + chr4_3:55915030-55915049 Msa0649310:intron 50.0%
CCTACAGGATGTGATGCTTC+GGG + chr4_3:55915122-55915141 Msa0649310:intron 50.0%
AGGTACTCAACACCGTTGTC+TGG + chr4_3:55915208-55915227 Msa0649310:intron 50.0%
GAGGTTGCAAGCGCTTACAT+TGG + chr4_3:55915352-55915371 Msa0649310:CDS 50.0%
GCGCTTACATTGGGTATAGG+TGG + chr4_3:55915362-55915381 Msa0649310:CDS 50.0%
ACATTGGGTATAGGTGGCGT+TGG + chr4_3:55915368-55915387 Msa0649310:CDS 50.0%
TCCTGAGATTGCAGCTAGGT+AGG + chr4_3:55915418-55915437 Msa0649310:intron 50.0%
ACCTACCTAGCTGCAATCTC+AGG - chr4_3:55915422-55915441 None:intergenic 50.0%
!! TGCCGGCTTTCTTGGTTCTT+TGG + chr4_3:55915739-55915758 Msa0649310:CDS 50.0%
CGCCAAAGAACCAAGAAAGC+CGG - chr4_3:55915744-55915763 None:intergenic 50.0%
TTTGGCGTATATCCGCATGC+TGG + chr4_3:55915757-55915776 Msa0649310:CDS 50.0%
TTGGCGTATATCCGCATGCT+GGG + chr4_3:55915758-55915777 Msa0649310:CDS 50.0%
CACTAAACCCAAACGGTGCA+AGG + chr4_3:55915795-55915814 Msa0649310:CDS 50.0%
TGGTCTACTGGTATGGCTCC+TGG + chr4_3:55912998-55913017 Msa0649310:CDS 55.0%
GGTATGGCTCCTGGTGACTA+CGG + chr4_3:55913007-55913026 Msa0649310:CDS 55.0%
! CGAAGCTTGGTGGTTGTTGG+AGG - chr4_3:55913037-55913056 None:intergenic 55.0%
TTGTAGAGCGAGACCTGTCG+AGG - chr4_3:55914446-55914465 None:intergenic 55.0%
!! TGCTGTCACTTTCTGTCGCC+TGG - chr4_3:55914840-55914859 None:intergenic 55.0%
TTGTCTTGCTCACGGCGTGT+TGG - chr4_3:55914886-55914905 None:intergenic 55.0%
CACGCCGTGAGCAAGACAAA+TGG + chr4_3:55914887-55914906 Msa0649310:CDS 55.0%
ACTGCCGTCAGTTGCAGCTT+TGG - chr4_3:55914923-55914942 None:intergenic 55.0%
TCTATGTCCTACACCGCCCT+AGG - chr4_3:55915040-55915059 None:intergenic 55.0%
! CCCGAAGCATCACATCCTGT+AGG - chr4_3:55915125-55915144 None:intergenic 55.0%
!! AGCTTTGGTGCCGGCTTTCT+TGG + chr4_3:55915731-55915750 Msa0649310:intron 55.0%
! CCATGCTACTTCCCAGCATG+CGG - chr4_3:55915772-55915791 None:intergenic 55.0%
TAGCAGCCCTTGCACCGTTT+GGG - chr4_3:55915805-55915824 None:intergenic 55.0%
ATAGCAGCCCTTGCACCGTT+TGG - chr4_3:55915806-55915825 None:intergenic 55.0%
ATGGCTCCTGGTGACTACGG+CGG + chr4_3:55913010-55913029 Msa0649310:CDS 60.0%
CCGCATGCTGGGAAGTAGCA+TGG + chr4_3:55915769-55915788 Msa0649310:CDS 60.0%
GGAGGACCGCCGTAGTCACC+AGG - chr4_3:55913019-55913038 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55912757 55917071 55912757 ID=Msa0649310;Name=Msa0649310
chr4_3 mRNA 55912757 55917071 55912757 ID=Msa0649310-mRNA-1;Parent=Msa0649310;Name=Msa0649310-mRNA-1;_AED=0.03;_eAED=0.03;_QI=109|1|1|1|0.88|0.8|10|254|340
chr4_3 exon 55912757 55913177 55912757 ID=Msa0649310-mRNA-1:exon:14421;Parent=Msa0649310-mRNA-1
chr4_3 exon 55914402 55914451 55914402 ID=Msa0649310-mRNA-1:exon:14422;Parent=Msa0649310-mRNA-1
chr4_3 exon 55914567 55914636 55914567 ID=Msa0649310-mRNA-1:exon:14423;Parent=Msa0649310-mRNA-1
chr4_3 exon 55914841 55914942 55914841 ID=Msa0649310-mRNA-1:exon:14424;Parent=Msa0649310-mRNA-1
chr4_3 exon 55915129 55915209 55915129 ID=Msa0649310-mRNA-1:exon:14425;Parent=Msa0649310-mRNA-1
chr4_3 exon 55915344 55915435 55915344 ID=Msa0649310-mRNA-1:exon:14426;Parent=Msa0649310-mRNA-1
chr4_3 exon 55915733 55915828 55915733 ID=Msa0649310-mRNA-1:exon:14427;Parent=Msa0649310-mRNA-1
chr4_3 exon 55916258 55916326 55916258 ID=Msa0649310-mRNA-1:exon:14428;Parent=Msa0649310-mRNA-1
chr4_3 exon 55916580 55916803 55916580 ID=Msa0649310-mRNA-1:exon:14429;Parent=Msa0649310-mRNA-1
chr4_3 exon 55916891 55917071 55916891 ID=Msa0649310-mRNA-1:exon:14430;Parent=Msa0649310-mRNA-1
chr4_3 five_prime_UTR 55912757 55912865 55912757 ID=Msa0649310-mRNA-1:five_prime_utr;Parent=Msa0649310-mRNA-1
chr4_3 CDS 55912866 55913177 55912866 ID=Msa0649310-mRNA-1:cds;Parent=Msa0649310-mRNA-1
chr4_3 CDS 55914402 55914451 55914402 ID=Msa0649310-mRNA-1:cds;Parent=Msa0649310-mRNA-1
chr4_3 CDS 55914567 55914636 55914567 ID=Msa0649310-mRNA-1:cds;Parent=Msa0649310-mRNA-1
chr4_3 CDS 55914841 55914942 55914841 ID=Msa0649310-mRNA-1:cds;Parent=Msa0649310-mRNA-1
chr4_3 CDS 55915129 55915209 55915129 ID=Msa0649310-mRNA-1:cds;Parent=Msa0649310-mRNA-1
chr4_3 CDS 55915344 55915435 55915344 ID=Msa0649310-mRNA-1:cds;Parent=Msa0649310-mRNA-1
chr4_3 CDS 55915733 55915828 55915733 ID=Msa0649310-mRNA-1:cds;Parent=Msa0649310-mRNA-1
chr4_3 CDS 55916258 55916326 55916258 ID=Msa0649310-mRNA-1:cds;Parent=Msa0649310-mRNA-1
chr4_3 CDS 55916580 55916730 55916580 ID=Msa0649310-mRNA-1:cds;Parent=Msa0649310-mRNA-1
chr4_3 three_prime_UTR 55916731 55916803 55916731 ID=Msa0649310-mRNA-1:three_prime_utr;Parent=Msa0649310-mRNA-1
chr4_3 three_prime_UTR 55916891 55917071 55916891 ID=Msa0649310-mRNA-1:three_prime_utr;Parent=Msa0649310-mRNA-1
Gene Sequence

>Msa0649310

ATGGGAATTATGAACTACTACAATTGTGTAACATGTGCAGCAACACCAATGTCACAAGATTCATCATCATCATCATTAGCACCAAACCCAAGACAAACAAAGGTTATTCTTCCCAATAAAAAACCCATGAAATGGTCTACTGGTATGGCTCCTGGTGACTACGGCGGTCCTCCAACAACCACCAAGCTTCGTAAGTATTGGGGTGGTGGAGACCCTGACCCTTTAGCTTCTGATGATTATTTGTGGAACAAAGATTTTGTTCCTCATTTTGAAAGGATGATTCAGCCACCTGAACAATCTTCTCCTTCAAAGGAAGTGCCTTCTGGGTTTCTAAGCTTAAATAGAGTCATGAGCCTCGACAGTATGGAAGTTGATTTGAGCAAAGAACTCTCAGCTCCTGTTGTACAGCAGCAAATAGAGACACCAATTATTGCGACAGAAAGTGACAGCAAGAGAGTAAGGTGGAGATTAGCACCAACACGCCGTGAGCAAGACAAATGGAATAGAGCTACCAAAGCTGCAACTGACGGCAGTGATGTGATGCTTCGGGAATTAAGGAAGTCTCGTGAAAATCCCGAAGTATTGGCTGCTCAATACAGGGAGCAGTATATTAAGTTAAAGAAGAGGTTGCAAGCGCTTACATTGGGTATAGGTGGCGTTGGTCTTGTTTCAACTTATGTTTCTTATTCTCCTGAGATTGCAGCTAGCTTTGGTGCCGGCTTTCTTGGTTCTTTGGCGTATATCCGCATGCTGGGAAGTAGCATGGACTCACTAAACCCAAACGGTGCAAGGGCTGCTATCAAGGGAGCAATTGGGCAGCCAAGATTACTGGTTCCTGTTGTATTGGTTATGATTTATAATCGATGGAATGCGATTCTTGTTCCAGAATATGGAATTATGCACTTAGAATTGATACCAATGCTAGTTGGTTTTTTCACATACAAGATTGCAACTTTTGCACAAGCTATAGAGGAGGTGATTACTGTTGCATCAAAGGACCTAAATATATCGACCAAAGACTAA

Protein sequence

>Msa0649310

MGIMNYYNCVTCAATPMSQDSSSSSLAPNPRQTKVILPNKKPMKWSTGMAPGDYGGPPTTTKLRKYWGGGDPDPLASDDYLWNKDFVPHFERMIQPPEQSSPSKEVPSGFLSLNRVMSLDSMEVDLSKELSAPVVQQQIETPIIATESDSKRVRWRLAPTRREQDKWNRATKAATDGSDVMLRELRKSRENPEVLAAQYREQYIKLKKRLQALTLGIGGVGLVSTYVSYSPEIAASFGAGFLGSLAYIRMLGSSMDSLNPNGARAAIKGAIGQPRLLVPVVLVMIYNRWNAILVPEYGIMHLELIPMLVGFFTYKIATFAQAIEEVITVASKDLNISTKD*