AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0277580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0277580 MtrunA17_Chr2g0286061 93.350 406 25 2 1 404 1 406 0.0 763
Msa0277580 MtrunA17_Chr4g0045341 39.550 311 165 5 100 399 98 396 2.34e-56 190
Msa0277580 MtrunA17_Chr7g0276671 34.985 323 179 6 104 399 117 435 4.70e-55 187
Msa0277580 MtrunA17_Chr5g0440821 41.111 90 46 3 91 180 308 390 1.02e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0277580 AT5G46250.1 51.733 375 153 8 43 404 56 415 3.58e-118 350
Msa0277580 AT5G46250.3 55.282 284 110 6 43 324 56 324 2.18e-94 287
Msa0277580 AT5G46250.2 55.282 284 110 6 43 324 56 324 2.95e-94 286
Msa0277580 AT3G19090.1 35.258 329 170 7 99 403 142 451 2.36e-50 176
Msa0277580 AT3G19090.2 33.427 356 167 9 99 403 142 478 5.73e-46 165
Msa0277580 AT2G43970.1 35.865 237 129 5 79 297 159 390 3.80e-41 153
Msa0277580 AT2G43970.2 32.035 231 130 6 79 297 159 374 2.27e-30 122
Msa0277580 AT5G21160.1 49.315 73 35 1 100 172 277 347 2.69e-13 72.4
Msa0277580 AT5G21160.2 49.315 73 35 1 100 172 277 347 2.89e-13 72.0
Msa0277580 AT5G21160.3 49.315 73 35 1 100 172 277 347 2.89e-13 72.0
Msa0277580 AT4G32720.1 28.326 233 114 9 105 307 14 223 1.13e-12 69.7
Msa0277580 AT4G32720.2 28.326 233 114 9 105 307 14 223 1.20e-12 69.3

Find 131 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTTACTTTCCAGCTATT+TGG 0.150420 2_3:-10183427 None:intergenic
TTTGCTTGAGTCGGGGTTTA+AGG 0.158696 2_3:+10186038 Msa0277580:three_prime_UTR
ATCAAGCAAGACAAGTTTAT+TGG 0.228102 2_3:+10183605 Msa0277580:CDS
GAAATCAGAGCATGAATTTC+AGG 0.229374 2_3:-10181495 None:intergenic
AGCAGAACGCGGGTCATTTA+TGG 0.242379 2_3:-10183564 None:intergenic
TCCAATGAAACAACGGTTTC+AGG 0.253195 2_3:-10181624 None:intergenic
GTTGGAGCGGTGGCGGTGGC+TGG 0.289458 2_3:-10181378 None:intergenic
TTCATCGTCATTGTTTAAAC+TGG 0.304117 2_3:+10186266 Msa0277580:three_prime_UTR
TTTCTCTCTCCGCAGTCTTT+CGG 0.338699 2_3:-10181258 None:intergenic
TTCCTAAAAGATGCAATTGC+TGG 0.353183 2_3:-10183035 None:intergenic
ACATCAACAACGTCAATAAC+TGG 0.359096 2_3:-10181465 None:intergenic
TCTCCAGTTATGTACTGTTT+TGG 0.360923 2_3:+10183355 Msa0277580:intron
GCAAGATTGATGCCAGATAA+TGG 0.368868 2_3:+10185951 Msa0277580:exon
GTGCAGCAGCAATAAATAAA+TGG 0.369240 2_3:-10183079 None:intergenic
GTAAAATACAGTCCATTATC+TGG 0.376673 2_3:-10185963 None:intergenic
AAAGATGCAATTGCTGGTAT+AGG 0.390615 2_3:-10183029 None:intergenic
TTGCTTGAGTCGGGGTTTAA+GGG 0.392886 2_3:+10186039 Msa0277580:three_prime_UTR
GCCTGAAACCGTTGTTTCAT+TGG 0.396718 2_3:+10181623 Msa0277580:CDS
AGACAAGTTTATTGGTAGTA+AGG 0.405899 2_3:+10183613 Msa0277580:CDS
GTCGGGGTTTAAGGGTTTGT+TGG 0.407729 2_3:+10186047 Msa0277580:three_prime_UTR
CTCAATGGAAACCGTCGAAC+AGG 0.411833 2_3:+10181347 Msa0277580:exon
GTGGAATCGCCGCCGGCGGT+TGG 0.413996 2_3:-10181396 None:intergenic
GGCCATGTATCTGAGAAAAC+TGG 0.414781 2_3:+10184876 Msa0277580:CDS
TATGTGTGTTTGCTTGAGTC+GGG 0.419152 2_3:+10186030 Msa0277580:three_prime_UTR
CAATGAAGTTAAAGATCATA+AGG 0.420153 2_3:+10183266 Msa0277580:CDS
GCCGGCGGTTGGAGCGGTGG+CGG 0.422816 2_3:-10181385 None:intergenic
AATGAACAAGACTGGAGAAA+TGG 0.429220 2_3:+10184683 Msa0277580:CDS
TGGGAACTGTAGGTTGTTAG+TGG 0.430272 2_3:+10183204 Msa0277580:intron
GAGCATTTGTCAAAGGATAA+AGG 0.430394 2_3:+10185640 Msa0277580:CDS
GGTTTAAGGGTTTGTTGGAC+TGG 0.433893 2_3:+10186052 Msa0277580:three_prime_UTR
TTCTCCCTTGAATGGTCCTC+TGG 0.434053 2_3:-10183389 None:intergenic
TTGTTAGTGGTGATGGGAAG+AGG 0.434607 2_3:+10183217 Msa0277580:CDS
TTTGATATTGATTGAAATGA+TGG 0.435471 2_3:+10186235 Msa0277580:three_prime_UTR
ACCGCCACCGCTCCAACCGC+CGG 0.438937 2_3:+10181384 Msa0277580:CDS
GCCGAATGTTCTCCCTTGAA+TGG 0.443285 2_3:-10183397 None:intergenic
GAGCGGAGGAGGCGAGGCGG+TGG 0.443328 2_3:-10181415 None:intergenic
CTATGTGTGTTTGCTTGAGT+CGG 0.443755 2_3:+10186029 Msa0277580:three_prime_UTR
CTGTAGGTTGTTAGTGGTGA+TGG 0.452864 2_3:+10183210 Msa0277580:intron
GGCGGTTGGAGCGGTGGCGG+TGG 0.453662 2_3:-10181382 None:intergenic
ACCATTCAAGGGAGAACATT+CGG 0.456865 2_3:+10183396 Msa0277580:CDS
GAGCGGTGGCGGTGGCTGGA+AGG 0.458842 2_3:-10181374 None:intergenic
TCTACTTTGGAGACGAGTTA+AGG 0.460696 2_3:-10186293 None:intergenic
TCTGTAGTAAAACTCTACTT+TGG 0.465182 2_3:-10186306 None:intergenic
TGACCATTCTCTCTCCTCAA+TGG 0.468055 2_3:+10181332 Msa0277580:exon
CTGTTCGACGGTTTCCATTG+AGG 0.470017 2_3:-10181346 None:intergenic
ACCGCCTCGCCTCCTCCGCT+CGG 0.470649 2_3:+10181417 Msa0277580:CDS
GCAAAACCCCGTGTTCCATC+AGG 0.471767 2_3:-10185889 None:intergenic
CGGCAAATATTCCAAATAGC+TGG 0.472406 2_3:+10183416 Msa0277580:CDS
TTCAATCAATATCAAACAAG+TGG 0.474912 2_3:-10186228 None:intergenic
TGATAAGTATATGCTGAGTC+TGG 0.484072 2_3:+10181981 Msa0277580:CDS
TACCGTGCTACAAATGGAAT+GGG 0.484889 2_3:+10185706 Msa0277580:CDS
ATTTATTGCTGCTGCACTGA+TGG 0.489389 2_3:+10183085 Msa0277580:CDS
ATTTGCCAGAGGACCATTCA+AGG 0.491971 2_3:+10183384 Msa0277580:CDS
CTTGATGATCAGCGTGATGA+AGG 0.496103 2_3:+10181582 Msa0277580:CDS
ACAGAATCACCGAGCGGAGG+AGG 0.503428 2_3:-10181426 None:intergenic
TGTTAGTGGTGATGGGAAGA+GGG 0.503484 2_3:+10183218 Msa0277580:CDS
AAACGGAACAAGGAAGGGTT+TGG 0.504737 2_3:+10182006 Msa0277580:CDS
TTAACTTCATTGAAACGAAG+TGG 0.508604 2_3:-10183255 None:intergenic
ATATGCTGAGTCTGGTCAAA+CGG 0.509288 2_3:+10181989 Msa0277580:CDS
GCCGCCGGCGGTTGGAGCGG+TGG 0.509707 2_3:-10181388 None:intergenic
CGACTCAAGCAAACACACAT+AGG 0.509935 2_3:-10186028 None:intergenic
TTTCCATTGAGGAGAGAGAA+TGG 0.513378 2_3:-10181335 None:intergenic
TGATCAGCGTGATGAAGGTC+AGG 0.513395 2_3:+10181587 Msa0277580:CDS
TCTGTAGTTGCATGCTCTTG+TGG 0.515273 2_3:+10184525 Msa0277580:intron
ATCGCCGCCGGCGGTTGGAG+CGG 0.517278 2_3:-10181391 None:intergenic
TGCTACATAGATTCCTCGTA+TGG 0.517319 2_3:-10186180 None:intergenic
ACAACGTCAATAACTGGATC+GGG 0.520693 2_3:-10181459 None:intergenic
TGAAGATATGCCTGTGGTAG+AGG 0.523979 2_3:+10184932 Msa0277580:CDS
CAAGCTCAAGATAATTAAGC+AGG 0.524515 2_3:+10181653 Msa0277580:CDS
GGCGGTGGAATCGCCGCCGG+CGG 0.525366 2_3:-10181400 None:intergenic
ATACCGTGCTACAAATGGAA+TGG 0.525953 2_3:+10185705 Msa0277580:CDS
ATCGTCATTGTTTAAACTGG+AGG 0.526836 2_3:+10186269 Msa0277580:three_prime_UTR
ATCTGGTGAAAGGTAGTGTT+TGG 0.533806 2_3:+10186091 Msa0277580:three_prime_UTR
ATCACCGAGCGGAGGAGGCG+AGG 0.534053 2_3:-10181421 None:intergenic
ATATTGATTGAAATGATGGT+TGG 0.534858 2_3:+10186239 Msa0277580:three_prime_UTR
TGTTAAATAATGAACAAGAC+TGG 0.534955 2_3:+10184675 Msa0277580:CDS
GCCACCGCTCCAACCGCCGG+CGG 0.538281 2_3:+10181387 Msa0277580:CDS
CGAGGCGGTGGAATCGCCGC+CGG 0.538341 2_3:-10181403 None:intergenic
GAGCCATCAAAACCACCTCC+TGG 0.540278 2_3:+10185856 Msa0277580:CDS
CAATCTTGCTAATTCGATGC+AGG 0.540489 2_3:-10185937 None:intergenic
CAGAGGCTGCAGCAGAACGC+GGG 0.545656 2_3:-10183574 None:intergenic
TTGTGGCTCAATCTGGTGAA+AGG 0.551608 2_3:+10186081 Msa0277580:three_prime_UTR
AACAACGTCAATAACTGGAT+CGG 0.559673 2_3:-10181460 None:intergenic
GAGTCTGGTCAAACGGAACA+AGG 0.566482 2_3:+10181996 Msa0277580:CDS
CTGGTCAAACGGAACAAGGA+AGG 0.570679 2_3:+10182000 Msa0277580:CDS
TAGCAATATTTCTGTTGAAG+TGG 0.573432 2_3:+10186198 Msa0277580:three_prime_UTR
TGTAGGTTGTTAGTGGTGAT+GGG 0.579631 2_3:+10183211 Msa0277580:intron
GGATGGGGAGCATTTGTCAA+AGG 0.582385 2_3:+10185633 Msa0277580:intron
GCAGAGGCTGCAGCAGAACG+CGG 0.582607 2_3:-10183575 None:intergenic
TCAGAATTAGATCCCTTCGA+AGG 0.583816 2_3:-10184840 None:intergenic
GACTCAAGCAAACACACATA+GGG 0.586099 2_3:-10186027 None:intergenic
ATCTGAGAAAACTGGAGATG+AGG 0.586120 2_3:+10184884 Msa0277580:CDS
ACTGGAGATGAGGAGAATCA+TGG 0.586230 2_3:+10184894 Msa0277580:CDS
TACCCATTCCATTTGTAGCA+CGG 0.586324 2_3:-10185708 None:intergenic
GAAATACACACCTCTACCAC+AGG 0.587429 2_3:-10184942 None:intergenic
TGGTGAAAGGTAGTGTTTGG+TGG 0.588883 2_3:+10186094 Msa0277580:three_prime_UTR
TGGTCAAACGGAACAAGGAA+GGG 0.591602 2_3:+10182001 Msa0277580:CDS
GGTTAAATTCCTCAGTCGGA+TGG 0.592421 2_3:+10184712 Msa0277580:CDS
CTCAGCATATACTTATCAGT+GGG 0.596104 2_3:-10181976 None:intergenic
TTGCTTGATATGTTTAGCAG+AGG 0.598420 2_3:-10183591 None:intergenic
TGCGGGTTAAATTCCTCAGT+CGG 0.602716 2_3:+10184708 Msa0277580:CDS
TAATTCGATGCAGGAACAAG+AGG 0.607177 2_3:-10185928 None:intergenic
TGGAAGGAGAACCTGTTCGA+CGG 0.608516 2_3:-10181358 None:intergenic
CAAAGGATAAAGGTGGGCAG+AGG 0.610423 2_3:+10185650 Msa0277580:CDS
AGACTGGAGAAATGGCATGC+GGG 0.610780 2_3:+10184691 Msa0277580:CDS
TGTGGAATATGAGACTATTG+AGG 0.615434 2_3:+10184543 Msa0277580:CDS
AGCAATATTTCTGTTGAAGT+GGG 0.622830 2_3:+10186199 Msa0277580:three_prime_UTR
TTTGCCAGAGGACCATTCAA+GGG 0.624015 2_3:+10183385 Msa0277580:CDS
TCTGAGAAACCGAAAGACTG+CGG 0.634642 2_3:+10181249 Msa0277580:five_prime_UTR
TAAATTCCTCAGTCGGATGG+CGG 0.637029 2_3:+10184715 Msa0277580:CDS
TTGGTAGTCCTCACCATACG+AGG 0.637094 2_3:+10186167 Msa0277580:three_prime_UTR
GAATAGATGATGTACCTCCA+TGG 0.638936 2_3:-10185825 None:intergenic
AACTAACCGCCATCCGACTG+AGG 0.641081 2_3:-10184721 None:intergenic
ACTCAGCATATACTTATCAG+TGG 0.648270 2_3:-10181977 None:intergenic
AATTCGATGCAGGAACAAGA+GGG 0.651066 2_3:-10185927 None:intergenic
ATTTGTCAAAGGATAAAGGT+GGG 0.654446 2_3:+10185644 Msa0277580:CDS
CATAGATTCCTCGTATGGTG+AGG 0.655098 2_3:-10186175 None:intergenic
ACCGAGCGGAGGAGGCGAGG+CGG 0.656376 2_3:-10181418 None:intergenic
AAGACTGGAGAAATGGCATG+CGG 0.667296 2_3:+10184690 Msa0277580:CDS
GTGATGGGAAGAGGGTTAAG+CGG 0.667642 2_3:+10183226 Msa0277580:CDS
TTTGGCAGAGAATTTGCCAG+AGG 0.668529 2_3:+10183373 Msa0277580:CDS
GAGATCATCCAATGAAACAA+CGG 0.668615 2_3:-10181631 None:intergenic
AGAGCAGAAAAGAAAGAGCG+TGG 0.670989 2_3:+10181280 Msa0277580:five_prime_UTR
ATGTGTGTTTGCTTGAGTCG+GGG 0.673705 2_3:+10186031 Msa0277580:three_prime_UTR
TGCATTGTTCCAGGCCATGG+AGG 0.674250 2_3:+10185811 Msa0277580:intron
ATAACAGAATCACCGAGCGG+AGG 0.681140 2_3:-10181429 None:intergenic
GGGCAGAGGAACTCTAAACA+AGG 0.690520 2_3:+10185664 Msa0277580:CDS
CATTTGTCAAAGGATAAAGG+TGG 0.703517 2_3:+10185643 Msa0277580:CDS
AAAATGCCTGATGGAACACG+GGG 0.728757 2_3:+10185883 Msa0277580:CDS
GTATCGTGAAGATATGCCTG+TGG 0.762641 2_3:+10184926 Msa0277580:CDS
ATGATAACAGAATCACCGAG+CGG 0.780458 2_3:-10181432 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATACCAAATATTAT+CGG + chr2_3:10185000-10185019 Msa0277580:intron 10.0%
!!! TAAAACATTTTTAGATTATT+AGG + chr2_3:10186121-10186140 Msa0277580:three_prime_UTR 10.0%
!! ATCATTGCTTATATTATAAA+TGG - chr2_3:10182655-10182674 None:intergenic 15.0%
!!! TTTTGTATATTACTTTTTGT+TGG + chr2_3:10184259-10184278 Msa0277580:intron 15.0%
!! ATAAAGGCTTAATTATAATA+TGG - chr2_3:10184605-10184624 None:intergenic 15.0%
!!! AATATGATTTTATACTGAAA+GGG - chr2_3:10185033-10185052 None:intergenic 15.0%
!!! TAATATGATTTTATACTGAA+AGG - chr2_3:10185034-10185053 None:intergenic 15.0%
!! TCTTCTTATCTATATATATT+CGG + chr2_3:10185731-10185750 Msa0277580:intron 15.0%
!!! GAAATATGAAACTTTTTTTT+TGG + chr2_3:10186148-10186167 Msa0277580:three_prime_UTR 15.0%
!! GTGAAAAATGCAAAATTATT+AGG - chr2_3:10181828-10181847 None:intergenic 20.0%
!! TCCAAGTATAACAAATAAAT+TGG + chr2_3:10182132-10182151 Msa0277580:intron 20.0%
!!! ACCAATTTATTTGTTATACT+TGG - chr2_3:10182136-10182155 None:intergenic 20.0%
!! AAAAAATTGCAAATTGCAAA+TGG - chr2_3:10182534-10182553 None:intergenic 20.0%
!!! TGATTAGTGATTTTAATTGA+AGG + chr2_3:10182587-10182606 Msa0277580:intron 20.0%
!!! GATTAGTGATTTTAATTGAA+GGG + chr2_3:10182588-10182607 Msa0277580:intron 20.0%
!!! ATTAGTGATTTTAATTGAAG+GGG + chr2_3:10182589-10182608 Msa0277580:intron 20.0%
!!! ATCATAAGGTATTTACTTAT+AGG + chr2_3:10183280-10183299 Msa0277580:intron 20.0%
!! GTTAATAACTAACCATAATA+TGG + chr2_3:10183652-10183671 Msa0277580:intron 20.0%
!! TCTTTATTATAACTACAGTT+AGG + chr2_3:10183825-10183844 Msa0277580:intron 20.0%
!! CTTTATTATAACTACAGTTA+GGG + chr2_3:10183826-10183845 Msa0277580:intron 20.0%
!! GAACATAATTATTTACAAAG+TGG - chr2_3:10184072-10184091 None:intergenic 20.0%
!! ATTACAGTATAACAAAATTG+AGG - chr2_3:10184240-10184259 None:intergenic 20.0%
!! TATAATTAAGCCTTTATATC+TGG + chr2_3:10184608-10184627 Msa0277580:intron 20.0%
!! TTGACATCATAATAATTGAT+AGG + chr2_3:10185118-10185137 Msa0277580:intron 20.0%
!!! ATACTTATAGTTTTGTAGTT+TGG + chr2_3:10185177-10185196 Msa0277580:intron 20.0%
!! CTTCTTATCTATATATATTC+GGG + chr2_3:10185732-10185751 Msa0277580:intron 20.0%
!! TTCTTATCTATATATATTCG+GGG + chr2_3:10185733-10185752 Msa0277580:intron 20.0%
!!! TTTGATATTGATTGAAATGA+TGG + chr2_3:10186235-10186254 Msa0277580:three_prime_UTR 20.0%
! TAAAACCTAGTAACTGTAAT+TGG + chr2_3:10181676-10181695 Msa0277580:intron 25.0%
! AAATTGAACTGTAGTTTGAT+AGG + chr2_3:10181790-10181809 Msa0277580:intron 25.0%
!! TTTGCATTTTTCACATTTCT+AGG + chr2_3:10181834-10181853 Msa0277580:intron 25.0%
!! TTGCATTTTTCACATTTCTA+GGG + chr2_3:10181835-10181854 Msa0277580:intron 25.0%
! CTTATCTCAACAATAACTTA+GGG - chr2_3:10181896-10181915 None:intergenic 25.0%
! ACTTATCTCAACAATAACTT+AGG - chr2_3:10181897-10181916 None:intergenic 25.0%
! TATGACATAAGGAATAATCT+GGG + chr2_3:10182181-10182200 Msa0277580:intron 25.0%
! TGTAGTAGATCTTAATTGAA+AGG + chr2_3:10182217-10182236 Msa0277580:intron 25.0%
! CTTAATTGAAAGGTAAATGT+TGG + chr2_3:10182227-10182246 Msa0277580:intron 25.0%
! AGCATATTTATCAATGCTAT+TGG + chr2_3:10182500-10182519 Msa0277580:intron 25.0%
! GCATATTTATCAATGCTATT+GGG + chr2_3:10182501-10182520 Msa0277580:intron 25.0%
! TACTTCATTATATGAAAACC+TGG + chr2_3:10182738-10182757 Msa0277580:intron 25.0%
! ATTACTAGGAATTACATGAT+AGG - chr2_3:10182994-10183013 None:intergenic 25.0%
! TTAAGAAAAATTCCTCTCTT+GGG + chr2_3:10183185-10183204 Msa0277580:intron 25.0%
! CAATGAAGTTAAAGATCATA+AGG + chr2_3:10183266-10183285 Msa0277580:CDS 25.0%
!!! GTTATACTAAGTCTTATTCT+TGG + chr2_3:10183332-10183351 Msa0277580:intron 25.0%
! AATAACTAACCATAATATGG+AGG + chr2_3:10183655-10183674 Msa0277580:intron 25.0%
!!! TTTACCTTTTTCACTTGATA+TGG + chr2_3:10183780-10183799 Msa0277580:intron 25.0%
! ATATCCATATCAAGTGAAAA+AGG - chr2_3:10183787-10183806 None:intergenic 25.0%
!! GACTTTAGAGATTCATTAAA+TGG - chr2_3:10183892-10183911 None:intergenic 25.0%
!!! TTGCATTGACTCAATTTTTT+AGG + chr2_3:10183991-10184010 Msa0277580:intron 25.0%
!!! TGCATTGACTCAATTTTTTA+GGG + chr2_3:10183992-10184011 Msa0277580:intron 25.0%
!!! ATTGAAGAGCATTTTAAATG+TGG - chr2_3:10184395-10184414 None:intergenic 25.0%
! TGTTAAATAATGAACAAGAC+TGG + chr2_3:10184675-10184694 Msa0277580:CDS 25.0%
!! TTGATAGTAGTTTATGTTGA+TGG + chr2_3:10184777-10184796 Msa0277580:intron 25.0%
! TGGTATTAAAAATACTAGCT+AGG - chr2_3:10184992-10185011 None:intergenic 25.0%
!! TGTCAAAACATCTTGATAAT+TGG - chr2_3:10185104-10185123 None:intergenic 25.0%
!!! AGTTTTGTAGTTTGGATTTA+TGG + chr2_3:10185185-10185204 Msa0277580:intron 25.0%
!!! AACTTTTGCTTTTCATAAGA+AGG - chr2_3:10185262-10185281 None:intergenic 25.0%
!!! AAAAGCAAAAGTTCTAAGTT+TGG + chr2_3:10185269-10185288 Msa0277580:intron 25.0%
!!! CTTTAGAATCTCAAATAAAC+AGG - chr2_3:10185439-10185458 None:intergenic 25.0%
! CAACGCATAATTGAAAATAA+CGG - chr2_3:10185526-10185545 None:intergenic 25.0%
! ACCAGTTATTAGAATGAAAA+GGG - chr2_3:10185791-10185810 None:intergenic 25.0%
! AACCAGTTATTAGAATGAAA+AGG - chr2_3:10185792-10185811 None:intergenic 25.0%
!! AGTGACGTACAATTTTAAAT+TGG + chr2_3:10186001-10186020 Msa0277580:three_prime_UTR 25.0%
!! GTGACGTACAATTTTAAATT+GGG + chr2_3:10186002-10186021 Msa0277580:three_prime_UTR 25.0%
!! TGACGTACAATTTTAAATTG+GGG + chr2_3:10186003-10186022 Msa0277580:three_prime_UTR 25.0%
!!! ACATTTTTAGATTATTAGGC+TGG + chr2_3:10186125-10186144 Msa0277580:three_prime_UTR 25.0%
!!! CATTTTTAGATTATTAGGCT+GGG + chr2_3:10186126-10186145 Msa0277580:three_prime_UTR 25.0%
! TTCAATCAATATCAAACAAG+TGG - chr2_3:10186231-10186250 None:intergenic 25.0%
!! ATATTGATTGAAATGATGGT+TGG + chr2_3:10186239-10186258 Msa0277580:three_prime_UTR 25.0%
!! AAATCGTTAGATTTTACTAG+TGG + chr2_3:10186398-10186417 Msa0277580:three_prime_UTR 25.0%
!! ACATTTCTAGGGTTTATGTT+TGG + chr2_3:10181846-10181865 Msa0277580:intron 30.0%
! CTGTTTGTGTTGAATTTTGA+AGG + chr2_3:10181924-10181943 Msa0277580:intron 30.0%
!! TTTGTGTTGAATTTTGAAGG+TGG + chr2_3:10181927-10181946 Msa0277580:intron 30.0%
!!! GTAAGTGCTCAAGTTTTTTT+TGG + chr2_3:10182028-10182047 Msa0277580:intron 30.0%
ATTATGCATTGTGCTGTAAT+TGG + chr2_3:10182073-10182092 Msa0277580:intron 30.0%
TTATGCATTGTGCTGTAATT+GGG + chr2_3:10182074-10182093 Msa0277580:intron 30.0%
!! TTGTTCTAGAGATGTTCATT+TGG + chr2_3:10182100-10182119 Msa0277580:intron 30.0%
!! TGTTCTAGAGATGTTCATTT+GGG + chr2_3:10182101-10182120 Msa0277580:intron 30.0%
TATTGCTGAGTAGAATTTGT+TGG + chr2_3:10182157-10182176 Msa0277580:intron 30.0%
! ATTGCTGAGTAGAATTTGTT+GGG + chr2_3:10182158-10182177 Msa0277580:intron 30.0%
!! AATTTGTTGGGTATGACATA+AGG + chr2_3:10182170-10182189 Msa0277580:intron 30.0%
GTATGACATAAGGAATAATC+TGG + chr2_3:10182180-10182199 Msa0277580:intron 30.0%
GATTAGATATTCCTCTTTCT+AGG + chr2_3:10182249-10182268 Msa0277580:intron 30.0%
TATCAGTACTTCACAACAAT+GGG - chr2_3:10182320-10182339 None:intergenic 30.0%
TTATCAGTACTTCACAACAA+TGG - chr2_3:10182321-10182340 None:intergenic 30.0%
CATCTGTTAAAGTTCATGAT+AGG + chr2_3:10182559-10182578 Msa0277580:intron 30.0%
! TGAAAACCTGGATGAAATTT+TGG + chr2_3:10182750-10182769 Msa0277580:intron 30.0%
CATTACATGTTAACAGAACA+AGG - chr2_3:10183140-10183159 None:intergenic 30.0%
! CAAGAGAGGAATTTTTCTTA+AGG - chr2_3:10183186-10183205 None:intergenic 30.0%
CTTAAGAAAAATTCCTCTCT+TGG + chr2_3:10183184-10183203 Msa0277580:intron 30.0%
TTAACTTCATTGAAACGAAG+TGG - chr2_3:10183258-10183277 None:intergenic 30.0%
GGTATTTACTTATAGGAACA+TGG + chr2_3:10183287-10183306 Msa0277580:intron 30.0%
CTGGAAAAATTGATGAGTTA+AGG - chr2_3:10183457-10183476 None:intergenic 30.0%
ATCAAGCAAGACAAGTTTAT+TGG + chr2_3:10183605-10183624 Msa0277580:CDS 30.0%
! AGACAAGTTTATTGGTAGTA+AGG + chr2_3:10183613-10183632 Msa0277580:CDS 30.0%
AATTAAGAGCCTCCATATTA+TGG - chr2_3:10183667-10183686 None:intergenic 30.0%
! CTACTAGAAATTCCATTTTG+AGG + chr2_3:10183706-10183725 Msa0277580:intron 30.0%
TGTGATTCAAATCCTCAAAA+TGG - chr2_3:10183721-10183740 None:intergenic 30.0%
ATCAAGTGAAAAAGGTAAAG+TGG - chr2_3:10183779-10183798 None:intergenic 30.0%
!!! ACTCTTTTTTCTGTTTCAGT+TGG + chr2_3:10184124-10184143 Msa0277580:intron 30.0%
TAACCATTTGTGTGTTTGAT+TGG + chr2_3:10184148-10184167 Msa0277580:intron 30.0%
AACCATTTGTGTGTTTGATT+GGG + chr2_3:10184149-10184168 Msa0277580:intron 30.0%
TATAACAAAATTGAGGTGGA+AGG - chr2_3:10184233-10184252 None:intergenic 30.0%
ACAGTATAACAAAATTGAGG+TGG - chr2_3:10184237-10184256 None:intergenic 30.0%
!! GAAAGTATCTCTTTAACATG+AGG - chr2_3:10184344-10184363 None:intergenic 30.0%
TGTTAAAGAGATACTTTCCT+TGG + chr2_3:10184346-10184365 Msa0277580:intron 30.0%
GTTAAAGAGATACTTTCCTT+GGG + chr2_3:10184347-10184366 Msa0277580:intron 30.0%
AAAGCTAAAAAGTTAACCCA+AGG - chr2_3:10184366-10184385 None:intergenic 30.0%
!!! GGTTAACTTTTTAGCTTTTC+TGG + chr2_3:10184368-10184387 Msa0277580:intron 30.0%
TATGGAGATAAAGGAATCAA+CGG - chr2_3:10184470-10184489 None:intergenic 30.0%
AACATTCGATATGGAGATAA+AGG - chr2_3:10184479-10184498 None:intergenic 30.0%
TGTGAAAACAACATTCGATA+TGG - chr2_3:10184488-10184507 None:intergenic 30.0%
AGCAAACAATCCAGATATAA+AGG - chr2_3:10184621-10184640 None:intergenic 30.0%
ACAAAAAAAACAACCTTCGA+AGG + chr2_3:10184827-10184846 Msa0277580:CDS 30.0%
CAAAAAAAACAACCTTCGAA+GGG + chr2_3:10184828-10184847 Msa0277580:CDS 30.0%
! AATTCTGAGAAAAATAGCTC+TGG + chr2_3:10184855-10184874 Msa0277580:CDS 30.0%
GGTAATGAACCGATAATATT+TGG - chr2_3:10185012-10185031 None:intergenic 30.0%
ATAAGCAAAAACTCATAGAC+CGG - chr2_3:10185392-10185411 None:intergenic 30.0%
TCAAATAAACAGGTGAATAC+TGG - chr2_3:10185429-10185448 None:intergenic 30.0%
AAGCCTGCATAATCAATTTA+TGG + chr2_3:10185456-10185475 Msa0277580:intron 30.0%
! AAGCAACACATGTTTTACTT+TGG + chr2_3:10185482-10185501 Msa0277580:intron 30.0%
! AGCAACACATGTTTTACTTT+GGG + chr2_3:10185483-10185502 Msa0277580:intron 30.0%
!! CGTTATTTTCAATTATGCGT+TGG + chr2_3:10185524-10185543 Msa0277580:intron 30.0%
ATTTGTCAAAGGATAAAGGT+GGG + chr2_3:10185644-10185663 Msa0277580:CDS 30.0%
! TCCCTTTTCATTCTAATAAC+TGG + chr2_3:10185787-10185806 Msa0277580:intron 30.0%
GTAAAATACAGTCCATTATC+TGG - chr2_3:10185966-10185985 None:intergenic 30.0%
! TAGCAATATTTCTGTTGAAG+TGG + chr2_3:10186198-10186217 Msa0277580:three_prime_UTR 30.0%
! AGCAATATTTCTGTTGAAGT+GGG + chr2_3:10186199-10186218 Msa0277580:three_prime_UTR 30.0%
TTCATCGTCATTGTTTAAAC+TGG + chr2_3:10186266-10186285 Msa0277580:three_prime_UTR 30.0%
TCTGTAGTAAAACTCTACTT+TGG - chr2_3:10186309-10186328 None:intergenic 30.0%
! TTTTACTACAGATGAGGAAA+AGG + chr2_3:10186317-10186336 Msa0277580:three_prime_UTR 30.0%
!!! CAGTATGTAGTTGTTTTAGA+CGG + chr2_3:10186353-10186372 Msa0277580:three_prime_UTR 30.0%
AACAACGTCAATAACTGGAT+CGG - chr2_3:10181463-10181482 None:intergenic 35.0%
ACATCAACAACGTCAATAAC+TGG - chr2_3:10181468-10181487 None:intergenic 35.0%
GAAATCAGAGCATGAATTTC+AGG - chr2_3:10181498-10181517 None:intergenic 35.0%
GAGATCATCCAATGAAACAA+CGG - chr2_3:10181634-10181653 None:intergenic 35.0%
CAAGCTCAAGATAATTAAGC+AGG + chr2_3:10181653-10181672 Msa0277580:CDS 35.0%
AAACGCCAATTACAGTTACT+AGG - chr2_3:10181684-10181703 None:intergenic 35.0%
CTCAGCATATACTTATCAGT+GGG - chr2_3:10181979-10181998 None:intergenic 35.0%
ACTCAGCATATACTTATCAG+TGG - chr2_3:10181980-10181999 None:intergenic 35.0%
TGATAAGTATATGCTGAGTC+TGG + chr2_3:10181981-10182000 Msa0277580:CDS 35.0%
AAGTTCAAGAACCTAGAAAG+AGG - chr2_3:10182263-10182282 None:intergenic 35.0%
! GCACATATGTAATTTGTCAC+TGG - chr2_3:10182385-10182404 None:intergenic 35.0%
GAGTTACTGAGTTACACTTA+CGG + chr2_3:10182426-10182445 Msa0277580:intron 35.0%
AGTTACTGAGTTACACTTAC+GGG + chr2_3:10182427-10182446 Msa0277580:intron 35.0%
ATTCTGCCAAAATTTCATCC+AGG - chr2_3:10182759-10182778 None:intergenic 35.0%
ACAAGACATAAACAACGCTA+TGG - chr2_3:10182959-10182978 None:intergenic 35.0%
ACTGCATGAACAGAATTACT+AGG - chr2_3:10183008-10183027 None:intergenic 35.0%
AAAGATGCAATTGCTGGTAT+AGG - chr2_3:10183032-10183051 None:intergenic 35.0%
! TACCAGCAATTGCATCTTTT+AGG + chr2_3:10183033-10183052 Msa0277580:CDS 35.0%
TTCCTAAAAGATGCAATTGC+TGG - chr2_3:10183038-10183057 None:intergenic 35.0%
GTGCAGCAGCAATAAATAAA+TGG - chr2_3:10183082-10183101 None:intergenic 35.0%
ACATGTTAACAGAACAAGGA+AGG - chr2_3:10183136-10183155 None:intergenic 35.0%
TTCTTAAGGACTAGAAGTAG+AGG - chr2_3:10183172-10183191 None:intergenic 35.0%
! TCTCCAGTTATGTACTGTTT+TGG + chr2_3:10183355-10183374 Msa0277580:intron 35.0%
CATCTTACTTTCCAGCTATT+TGG - chr2_3:10183430-10183449 None:intergenic 35.0%
TTGCTTGATATGTTTAGCAG+AGG - chr2_3:10183594-10183613 None:intergenic 35.0%
GATATGATTGTGTGCTTAGT+TGG + chr2_3:10183802-10183821 Msa0277580:intron 35.0%
GTGGCCATTTACTTAGTTTA+GGG - chr2_3:10184053-10184072 None:intergenic 35.0%
AGTGGCCATTTACTTAGTTT+AGG - chr2_3:10184054-10184073 None:intergenic 35.0%
TACAGAGGGGTAAAATAGAA+TGG - chr2_3:10184511-10184530 None:intergenic 35.0%
TGTGGAATATGAGACTATTG+AGG + chr2_3:10184543-10184562 Msa0277580:CDS 35.0%
AATGAACAAGACTGGAGAAA+TGG + chr2_3:10184683-10184702 Msa0277580:CDS 35.0%
CGAGAAAAGAGAAAAGACAA+CGG - chr2_3:10184748-10184767 None:intergenic 35.0%
!! TGATGGTCATTTTATGCTTC+AGG + chr2_3:10184794-10184813 Msa0277580:intron 35.0%
!! GATGGTCATTTTATGCTTCA+GGG + chr2_3:10184795-10184814 Msa0277580:intron 35.0%
!! ATGGTCATTTTATGCTTCAG+GGG + chr2_3:10184796-10184815 Msa0277580:intron 35.0%
GCGCTACAATTATATCACTT+GGG + chr2_3:10185140-10185159 Msa0277580:intron 35.0%
CGCTACAATTATATCACTTG+GGG + chr2_3:10185141-10185160 Msa0277580:intron 35.0%
CAAAAAGTTGCACAAAAGAC+AGG - chr2_3:10185346-10185365 None:intergenic 35.0%
!! CAACTTTTTGTTATCCGATC+TGG + chr2_3:10185356-10185375 Msa0277580:intron 35.0%
CCACCATAAATTGATTATGC+AGG - chr2_3:10185462-10185481 None:intergenic 35.0%
CCTGCATAATCAATTTATGG+TGG + chr2_3:10185459-10185478 Msa0277580:intron 35.0%
! TACTTTGGGAATAAGTGCAT+TGG + chr2_3:10185497-10185516 Msa0277580:intron 35.0%
GGAAAAAATCTCTCACAAAC+AGG + chr2_3:10185545-10185564 Msa0277580:intron 35.0%
GAGCATTTGTCAAAGGATAA+AGG + chr2_3:10185640-10185659 Msa0277580:CDS 35.0%
CATTTGTCAAAGGATAAAGG+TGG + chr2_3:10185643-10185662 Msa0277580:CDS 35.0%
CAAAAATACCGTGCTACAAA+TGG + chr2_3:10185700-10185719 Msa0277580:CDS 35.0%
!!! TGTTGGACTGGTAAATTTTG+TGG + chr2_3:10186064-10186083 Msa0277580:three_prime_UTR 35.0%
! GTAAATTTTGTGGCTCAATC+TGG + chr2_3:10186074-10186093 Msa0277580:three_prime_UTR 35.0%
ATCGTCATTGTTTAAACTGG+AGG + chr2_3:10186269-10186288 Msa0277580:three_prime_UTR 35.0%
! GTAGAGTTTTACTACAGATG+AGG + chr2_3:10186311-10186330 Msa0277580:three_prime_UTR 35.0%
TTTCCATTGAGGAGAGAGAA+TGG - chr2_3:10181338-10181357 None:intergenic 40.0%
ATGATAACAGAATCACCGAG+CGG - chr2_3:10181435-10181454 None:intergenic 40.0%
ACAACGTCAATAACTGGATC+GGG - chr2_3:10181462-10181481 None:intergenic 40.0%
TCCAATGAAACAACGGTTTC+AGG - chr2_3:10181627-10181646 None:intergenic 40.0%
ATATGCTGAGTCTGGTCAAA+CGG + chr2_3:10181989-10182008 Msa0277580:CDS 40.0%
ACAAAGTTGCATTGTCAGCA+TGG + chr2_3:10182340-10182359 Msa0277580:intron 40.0%
GTTACTGAGTTACACTTACG+GGG + chr2_3:10182428-10182447 Msa0277580:intron 40.0%
TTACTGAGTTACACTTACGG+GGG + chr2_3:10182429-10182448 Msa0277580:intron 40.0%
TAATTGAAGGGGTTCTTCGA+TGG + chr2_3:10182600-10182619 Msa0277580:intron 40.0%
ATTTATTGCTGCTGCACTGA+TGG + chr2_3:10183085-10183104 Msa0277580:CDS 40.0%
TGTAGGTTGTTAGTGGTGAT+GGG + chr2_3:10183211-10183230 Msa0277580:intron 40.0%
CTGCCAAAACAGTACATAAC+TGG - chr2_3:10183361-10183380 None:intergenic 40.0%
ACCATTCAAGGGAGAACATT+CGG + chr2_3:10183396-10183415 Msa0277580:CDS 40.0%
CGGCAAATATTCCAAATAGC+TGG + chr2_3:10183416-10183435 Msa0277580:CDS 40.0%
ACATCTTAGTTACACGAGAC+TGG - chr2_3:10183476-10183495 None:intergenic 40.0%
! CTGAGAAAGCAACTTTTGAC+TGG - chr2_3:10183854-10183873 None:intergenic 40.0%
! CCATTTACTTAGTTTAGGGC+TGG - chr2_3:10184049-10184068 None:intergenic 40.0%
CCAGCCCTAAACTAAGTAAA+TGG + chr2_3:10184046-10184065 Msa0277580:intron 40.0%
CACCCAATCAAACACACAAA+TGG - chr2_3:10184154-10184173 None:intergenic 40.0%
! TTTGTTGGTGAAGTCATCTG+CGG + chr2_3:10184274-10184293 Msa0277580:intron 40.0%
! CTTTAACATGAGGCATCTCA+TGG - chr2_3:10184334-10184353 None:intergenic 40.0%
ACGGCAAAGAAGAATATAGC+AGG - chr2_3:10184451-10184470 None:intergenic 40.0%
TGGATTGTTTGCTTAGTCTG+TGG + chr2_3:10184628-10184647 Msa0277580:intron 40.0%
ATTGCCACCTAAATCAGCAT+TGG - chr2_3:10184656-10184675 None:intergenic 40.0%
TCAGAATTAGATCCCTTCGA+AGG - chr2_3:10184843-10184862 None:intergenic 40.0%
! CTCCAGTTTTCTCAGATACA+TGG - chr2_3:10184881-10184900 None:intergenic 40.0%
ATCTGAGAAAACTGGAGATG+AGG + chr2_3:10184884-10184903 Msa0277580:CDS 40.0%
! ATCTTGATAATTGGCACGCT+TGG - chr2_3:10185095-10185114 None:intergenic 40.0%
GGCGCTACAATTATATCACT+TGG + chr2_3:10185139-10185158 Msa0277580:intron 40.0%
CAACAGAGACAAATGTAAGC+TGG - chr2_3:10185597-10185616 None:intergenic 40.0%
! TGTTGCTTACCTGTCATTAC+AGG + chr2_3:10185612-10185631 Msa0277580:intron 40.0%
CTTACCTGTCATTACAGGAT+GGG + chr2_3:10185617-10185636 Msa0277580:intron 40.0%
TTACCTGTCATTACAGGATG+GGG + chr2_3:10185618-10185637 Msa0277580:intron 40.0%
ATACCGTGCTACAAATGGAA+TGG + chr2_3:10185705-10185724 Msa0277580:CDS 40.0%
TACCGTGCTACAAATGGAAT+GGG + chr2_3:10185706-10185725 Msa0277580:CDS 40.0%
TACCCATTCCATTTGTAGCA+CGG - chr2_3:10185711-10185730 None:intergenic 40.0%
ATAACTGGTTGCATTGTTCC+AGG + chr2_3:10185802-10185821 Msa0277580:intron 40.0%
GAATAGATGATGTACCTCCA+TGG - chr2_3:10185828-10185847 None:intergenic 40.0%
CAAAAATGCCTGATGGAACA+CGG + chr2_3:10185881-10185900 Msa0277580:CDS 40.0%
AAAAATGCCTGATGGAACAC+GGG + chr2_3:10185882-10185901 Msa0277580:CDS 40.0%
AATTCGATGCAGGAACAAGA+GGG - chr2_3:10185930-10185949 None:intergenic 40.0%
TAATTCGATGCAGGAACAAG+AGG - chr2_3:10185931-10185950 None:intergenic 40.0%
CAATCTTGCTAATTCGATGC+AGG - chr2_3:10185940-10185959 None:intergenic 40.0%
GCAAGATTGATGCCAGATAA+TGG + chr2_3:10185951-10185970 Msa0277580:exon 40.0%
GACTCAAGCAAACACACATA+GGG - chr2_3:10186030-10186049 None:intergenic 40.0%
CTATGTGTGTTTGCTTGAGT+CGG + chr2_3:10186029-10186048 Msa0277580:three_prime_UTR 40.0%
TATGTGTGTTTGCTTGAGTC+GGG + chr2_3:10186030-10186049 Msa0277580:three_prime_UTR 40.0%
ATCTGGTGAAAGGTAGTGTT+TGG + chr2_3:10186091-10186110 Msa0277580:three_prime_UTR 40.0%
TGCTACATAGATTCCTCGTA+TGG - chr2_3:10186183-10186202 None:intergenic 40.0%
! TCTACTTTGGAGACGAGTTA+AGG - chr2_3:10186296-10186315 None:intergenic 40.0%
TCTGAGAAACCGAAAGACTG+CGG + chr2_3:10181249-10181268 Msa0277580:five_prime_UTR 45.0%
TTTCTCTCTCCGCAGTCTTT+CGG - chr2_3:10181261-10181280 None:intergenic 45.0%
AGAGCAGAAAAGAAAGAGCG+TGG + chr2_3:10181280-10181299 Msa0277580:five_prime_UTR 45.0%
TGACCATTCTCTCTCCTCAA+TGG + chr2_3:10181332-10181351 Msa0277580:exon 45.0%
! CTTGATGATCAGCGTGATGA+AGG + chr2_3:10181582-10181601 Msa0277580:CDS 45.0%
! GCCTGAAACCGTTGTTTCAT+TGG + chr2_3:10181623-10181642 Msa0277580:CDS 45.0%
TGGTCAAACGGAACAAGGAA+GGG + chr2_3:10182001-10182020 Msa0277580:CDS 45.0%
AAACGGAACAAGGAAGGGTT+TGG + chr2_3:10182006-10182025 Msa0277580:CDS 45.0%
GTTACACTTACGGGGGATAA+TGG + chr2_3:10182436-10182455 Msa0277580:intron 45.0%
ATTCCTCTCTTGGGAACTGT+AGG + chr2_3:10183194-10183213 Msa0277580:intron 45.0%
TGGGAACTGTAGGTTGTTAG+TGG + chr2_3:10183204-10183223 Msa0277580:intron 45.0%
CTGTAGGTTGTTAGTGGTGA+TGG + chr2_3:10183210-10183229 Msa0277580:intron 45.0%
!! TTGTTAGTGGTGATGGGAAG+AGG + chr2_3:10183217-10183236 Msa0277580:CDS 45.0%
!! TGTTAGTGGTGATGGGAAGA+GGG + chr2_3:10183218-10183237 Msa0277580:CDS 45.0%
TTTGGCAGAGAATTTGCCAG+AGG + chr2_3:10183373-10183392 Msa0277580:CDS 45.0%
ATTTGCCAGAGGACCATTCA+AGG + chr2_3:10183384-10183403 Msa0277580:CDS 45.0%
TTTGCCAGAGGACCATTCAA+GGG + chr2_3:10183385-10183404 Msa0277580:CDS 45.0%
CTTGTCCATGGGTAAACAAG+GGG - chr2_3:10183952-10183971 None:intergenic 45.0%
CCTTGTCCATGGGTAAACAA+GGG - chr2_3:10183953-10183972 None:intergenic 45.0%
! CCTTGTTTACCCATGGACAA+GGG + chr2_3:10183951-10183970 Msa0277580:intron 45.0%
CTTGTTTACCCATGGACAAG+GGG + chr2_3:10183952-10183971 Msa0277580:intron 45.0%
TTCATTCACCCCTTGTCCAT+GGG - chr2_3:10183963-10183982 None:intergenic 45.0%
TTTCATTCACCCCTTGTCCA+TGG - chr2_3:10183964-10183983 None:intergenic 45.0%
CTGCAGCTTGAGCTGTATAT+AGG + chr2_3:10184190-10184209 Msa0277580:intron 45.0%
! TTGTTGGTGAAGTCATCTGC+GGG + chr2_3:10184275-10184294 Msa0277580:intron 45.0%
CGGGAACATTAGTAGTACTG+TGG + chr2_3:10184294-10184313 Msa0277580:intron 45.0%
! AAGAGCATGCAACTACAGAG+GGG - chr2_3:10184524-10184543 None:intergenic 45.0%
! CAAGAGCATGCAACTACAGA+GGG - chr2_3:10184525-10184544 None:intergenic 45.0%
! ACAAGAGCATGCAACTACAG+AGG - chr2_3:10184526-10184545 None:intergenic 45.0%
TCTGTAGTTGCATGCTCTTG+TGG + chr2_3:10184525-10184544 Msa0277580:intron 45.0%
!! TGTGGTGCCAATGCTGATTT+AGG + chr2_3:10184646-10184665 Msa0277580:intron 45.0%
AAGACTGGAGAAATGGCATG+CGG + chr2_3:10184690-10184709 Msa0277580:CDS 45.0%
! TGCGGGTTAAATTCCTCAGT+CGG + chr2_3:10184708-10184727 Msa0277580:CDS 45.0%
GGTTAAATTCCTCAGTCGGA+TGG + chr2_3:10184712-10184731 Msa0277580:CDS 45.0%
TAAATTCCTCAGTCGGATGG+CGG + chr2_3:10184715-10184734 Msa0277580:CDS 45.0%
GGCCATGTATCTGAGAAAAC+TGG + chr2_3:10184876-10184895 Msa0277580:CDS 45.0%
ACTGGAGATGAGGAGAATCA+TGG + chr2_3:10184894-10184913 Msa0277580:CDS 45.0%
GTATCGTGAAGATATGCCTG+TGG + chr2_3:10184926-10184945 Msa0277580:CDS 45.0%
TGAAGATATGCCTGTGGTAG+AGG + chr2_3:10184932-10184951 Msa0277580:CDS 45.0%
GAAATACACACCTCTACCAC+AGG - chr2_3:10184945-10184964 None:intergenic 45.0%
!! TTCTGAAGCTACGACAGACA+AGG - chr2_3:10185322-10185341 None:intergenic 45.0%
GCTTACCTGTCATTACAGGA+TGG + chr2_3:10185616-10185635 Msa0277580:intron 45.0%
! CGTGTTCCATCAGGCATTTT+TGG - chr2_3:10185883-10185902 None:intergenic 45.0%
AAAATGCCTGATGGAACACG+GGG + chr2_3:10185883-10185902 Msa0277580:CDS 45.0%
CGACTCAAGCAAACACACAT+AGG - chr2_3:10186031-10186050 None:intergenic 45.0%
ATGTGTGTTTGCTTGAGTCG+GGG + chr2_3:10186031-10186050 Msa0277580:three_prime_UTR 45.0%
TTTGCTTGAGTCGGGGTTTA+AGG + chr2_3:10186038-10186057 Msa0277580:three_prime_UTR 45.0%
TTGCTTGAGTCGGGGTTTAA+GGG + chr2_3:10186039-10186058 Msa0277580:three_prime_UTR 45.0%
!! GGTTTAAGGGTTTGTTGGAC+TGG + chr2_3:10186052-10186071 Msa0277580:three_prime_UTR 45.0%
TTGTGGCTCAATCTGGTGAA+AGG + chr2_3:10186081-10186100 Msa0277580:three_prime_UTR 45.0%
TGGTGAAAGGTAGTGTTTGG+TGG + chr2_3:10186094-10186113 Msa0277580:three_prime_UTR 45.0%
CATAGATTCCTCGTATGGTG+AGG - chr2_3:10186178-10186197 None:intergenic 45.0%
CTGTTCGACGGTTTCCATTG+AGG - chr2_3:10181349-10181368 None:intergenic 50.0%
CTCAATGGAAACCGTCGAAC+AGG + chr2_3:10181347-10181366 Msa0277580:exon 50.0%
TGGAAGGAGAACCTGTTCGA+CGG - chr2_3:10181361-10181380 None:intergenic 50.0%
ATAACAGAATCACCGAGCGG+AGG - chr2_3:10181432-10181451 None:intergenic 50.0%
TGATCAGCGTGATGAAGGTC+AGG + chr2_3:10181587-10181606 Msa0277580:CDS 50.0%
GAGTCTGGTCAAACGGAACA+AGG + chr2_3:10181996-10182015 Msa0277580:CDS 50.0%
CTGGTCAAACGGAACAAGGA+AGG + chr2_3:10182000-10182019 Msa0277580:CDS 50.0%
CAACCTACAGTTCCCAAGAG+AGG - chr2_3:10183200-10183219 None:intergenic 50.0%
! GTGATGGGAAGAGGGTTAAG+CGG + chr2_3:10183226-10183245 Msa0277580:CDS 50.0%
TTCTCCCTTGAATGGTCCTC+TGG - chr2_3:10183392-10183411 None:intergenic 50.0%
GCCGAATGTTCTCCCTTGAA+TGG - chr2_3:10183400-10183419 None:intergenic 50.0%
AGCAGAACGCGGGTCATTTA+TGG - chr2_3:10183567-10183586 None:intergenic 50.0%
! GTCTTCCCCTTGTTTACCCA+TGG + chr2_3:10183944-10183963 Msa0277580:intron 50.0%
! CCCTTGTTTACCCATGGACA+AGG + chr2_3:10183950-10183969 Msa0277580:intron 50.0%
CCCTTGTCCATGGGTAAACA+AGG - chr2_3:10183954-10183973 None:intergenic 50.0%
!! GGTGCCAATGCTGATTTAGG+TGG + chr2_3:10184649-10184668 Msa0277580:intron 50.0%
AGACTGGAGAAATGGCATGC+GGG + chr2_3:10184691-10184710 Msa0277580:CDS 50.0%
CACGCTTGGTCACAAGAAAC+TGG - chr2_3:10185081-10185100 None:intergenic 50.0%
CCGGACTTCAAGATCCAGAT+CGG - chr2_3:10185373-10185392 None:intergenic 50.0%
CCGATCTGGATCTTGAAGTC+CGG + chr2_3:10185370-10185389 Msa0277580:intron 50.0%
!! GGATGGGGAGCATTTGTCAA+AGG + chr2_3:10185633-10185652 Msa0277580:intron 50.0%
CAAAGGATAAAGGTGGGCAG+AGG + chr2_3:10185650-10185669 Msa0277580:CDS 50.0%
GGGCAGAGGAACTCTAAACA+AGG + chr2_3:10185664-10185683 Msa0277580:CDS 50.0%
!!! AGGAGGTGGTTTTGATGGCT+CGG - chr2_3:10185857-10185876 None:intergenic 50.0%
!!! TCAGGCATTTTTGGTCCAGG+AGG - chr2_3:10185874-10185893 None:intergenic 50.0%
!!! CCATCAGGCATTTTTGGTCC+AGG - chr2_3:10185877-10185896 None:intergenic 50.0%
CCTGGACCAAAAATGCCTGA+TGG + chr2_3:10185874-10185893 Msa0277580:CDS 50.0%
!! GGAACACGGGGTTTTGCTAT+CGG + chr2_3:10185895-10185914 Msa0277580:CDS 50.0%
GTCGGGGTTTAAGGGTTTGT+TGG + chr2_3:10186047-10186066 Msa0277580:three_prime_UTR 50.0%
! TTGGTAGTCCTCACCATACG+AGG + chr2_3:10186167-10186186 Msa0277580:three_prime_UTR 50.0%
AACTAACCGCCATCCGACTG+AGG - chr2_3:10184724-10184743 None:intergenic 55.0%
GCTCCCCATCCTGTAATGAC+AGG - chr2_3:10185624-10185643 None:intergenic 55.0%
GGTTGCATTGTTCCAGGCCA+TGG + chr2_3:10185808-10185827 Msa0277580:intron 55.0%
TGCATTGTTCCAGGCCATGG+AGG + chr2_3:10185811-10185830 Msa0277580:intron 55.0%
GATGATGTACCTCCATGGCC+TGG - chr2_3:10185823-10185842 None:intergenic 55.0%
GAGCCATCAAAACCACCTCC+TGG + chr2_3:10185856-10185875 Msa0277580:CDS 55.0%
!!! GGTCCAGGAGGTGGTTTTGA+TGG - chr2_3:10185862-10185881 None:intergenic 55.0%
!!! GGCATTTTTGGTCCAGGAGG+TGG - chr2_3:10185871-10185890 None:intergenic 55.0%
GCAAAACCCCGTGTTCCATC+AGG - chr2_3:10185892-10185911 None:intergenic 55.0%
ACAGAATCACCGAGCGGAGG+AGG - chr2_3:10181429-10181448 None:intergenic 60.0%
!! CGGGGTTTTGCTATCGGACG+AGG + chr2_3:10185901-10185920 Msa0277580:CDS 60.0%
CAGAGGCTGCAGCAGAACGC+GGG - chr2_3:10183577-10183596 None:intergenic 65.0%
GCAGAGGCTGCAGCAGAACG+CGG - chr2_3:10183578-10183597 None:intergenic 65.0%
ATCACCGAGCGGAGGAGGCG+AGG - chr2_3:10181424-10181443 None:intergenic 70.0%
! GAGCGGTGGCGGTGGCTGGA+AGG - chr2_3:10181377-10181396 None:intergenic 75.0%
! GTTGGAGCGGTGGCGGTGGC+TGG - chr2_3:10181381-10181400 None:intergenic 75.0%
ACCGCCACCGCTCCAACCGC+CGG + chr2_3:10181384-10181403 Msa0277580:CDS 75.0%
ATCGCCGCCGGCGGTTGGAG+CGG - chr2_3:10181394-10181413 None:intergenic 75.0%
GTGGAATCGCCGCCGGCGGT+TGG - chr2_3:10181399-10181418 None:intergenic 75.0%
CGAGGCGGTGGAATCGCCGC+CGG - chr2_3:10181406-10181425 None:intergenic 75.0%
ACCGCCTCGCCTCCTCCGCT+CGG + chr2_3:10181417-10181436 Msa0277580:CDS 75.0%
ACCGAGCGGAGGAGGCGAGG+CGG - chr2_3:10181421-10181440 None:intergenic 75.0%
!! GGCGGTTGGAGCGGTGGCGG+TGG - chr2_3:10181385-10181404 None:intergenic 80.0%
! GCCGGCGGTTGGAGCGGTGG+CGG - chr2_3:10181388-10181407 None:intergenic 80.0%
! GCCACCGCTCCAACCGCCGG+CGG + chr2_3:10181387-10181406 Msa0277580:CDS 80.0%
! GGCGGTGGAATCGCCGCCGG+CGG - chr2_3:10181403-10181422 None:intergenic 80.0%
! GAGCGGAGGAGGCGAGGCGG+TGG - chr2_3:10181418-10181437 None:intergenic 80.0%
! GCCGCCGGCGGTTGGAGCGG+TGG - chr2_3:10181391-10181410 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 10181245 10186428 10181245 ID=Msa0277580;Name=Msa0277580
chr2_3 mRNA 10181245 10186428 10181245 ID=Msa0277580-mRNA-1;Parent=Msa0277580;Name=Msa0277580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=106|1|1|1|1|1|11|477|404
chr2_3 exon 10181245 10181674 10181245 ID=Msa0277580-mRNA-1:exon:4495;Parent=Msa0277580-mRNA-1
chr2_3 exon 10181946 10182027 10181946 ID=Msa0277580-mRNA-1:exon:4496;Parent=Msa0277580-mRNA-1
chr2_3 exon 10183027 10183121 10183027 ID=Msa0277580-mRNA-1:exon:4497;Parent=Msa0277580-mRNA-1
chr2_3 exon 10183216 10183287 10183216 ID=Msa0277580-mRNA-1:exon:4498;Parent=Msa0277580-mRNA-1
chr2_3 exon 10183362 10183441 10183362 ID=Msa0277580-mRNA-1:exon:4499;Parent=Msa0277580-mRNA-1
chr2_3 exon 10183550 10183634 10183550 ID=Msa0277580-mRNA-1:exon:4500;Parent=Msa0277580-mRNA-1
chr2_3 exon 10184532 10184579 10184532 ID=Msa0277580-mRNA-1:exon:4501;Parent=Msa0277580-mRNA-1
chr2_3 exon 10184668 10184736 10184668 ID=Msa0277580-mRNA-1:exon:4502;Parent=Msa0277580-mRNA-1
chr2_3 exon 10184816 10184953 10184816 ID=Msa0277580-mRNA-1:exon:4503;Parent=Msa0277580-mRNA-1
chr2_3 exon 10185634 10185727 10185634 ID=Msa0277580-mRNA-1:exon:4504;Parent=Msa0277580-mRNA-1
chr2_3 exon 10185824 10186428 10185824 ID=Msa0277580-mRNA-1:exon:4505;Parent=Msa0277580-mRNA-1
chr2_3 five_prime_UTR 10181245 10181350 10181245 ID=Msa0277580-mRNA-1:five_prime_utr;Parent=Msa0277580-mRNA-1
chr2_3 CDS 10181351 10181674 10181351 ID=Msa0277580-mRNA-1:cds;Parent=Msa0277580-mRNA-1
chr2_3 CDS 10181946 10182027 10181946 ID=Msa0277580-mRNA-1:cds;Parent=Msa0277580-mRNA-1
chr2_3 CDS 10183027 10183121 10183027 ID=Msa0277580-mRNA-1:cds;Parent=Msa0277580-mRNA-1
chr2_3 CDS 10183216 10183287 10183216 ID=Msa0277580-mRNA-1:cds;Parent=Msa0277580-mRNA-1
chr2_3 CDS 10183362 10183441 10183362 ID=Msa0277580-mRNA-1:cds;Parent=Msa0277580-mRNA-1
chr2_3 CDS 10183550 10183634 10183550 ID=Msa0277580-mRNA-1:cds;Parent=Msa0277580-mRNA-1
chr2_3 CDS 10184532 10184579 10184532 ID=Msa0277580-mRNA-1:cds;Parent=Msa0277580-mRNA-1
chr2_3 CDS 10184668 10184736 10184668 ID=Msa0277580-mRNA-1:cds;Parent=Msa0277580-mRNA-1
chr2_3 CDS 10184816 10184953 10184816 ID=Msa0277580-mRNA-1:cds;Parent=Msa0277580-mRNA-1
chr2_3 CDS 10185634 10185727 10185634 ID=Msa0277580-mRNA-1:cds;Parent=Msa0277580-mRNA-1
chr2_3 CDS 10185824 10185951 10185824 ID=Msa0277580-mRNA-1:cds;Parent=Msa0277580-mRNA-1
chr2_3 three_prime_UTR 10185952 10186428 10185952 ID=Msa0277580-mRNA-1:three_prime_utr;Parent=Msa0277580-mRNA-1
Gene Sequence

>Msa0277580

ATGGAAACCGTCGAACAGGTTCTCCTTCCAGCCACCGCCACCGCTCCAACCGCCGGCGGCGATTCCACCGCCTCGCCTCCTCCGCTCGGTGATTCTGTTATCATGACTCCCGATCCAGTTATTGACGTTGTTGATGTTGCTGAGCCTGAAATTCATGCTCTGATTTCTGATGAAGAGCATGATCATGAACGTGAAATTGAAATTGATCATGATTTCGATCATGAGAACGAGCTTGATGATCAGCGTGATGAAGGTCAGGAACGTGATCATGTGCCTGAAACCGTTGTTTCATTGGATGATCTCAAGCTCAAGATAATTAAGCAGGTGGAGTATTATTTCAGTGATGAAAATCTGCCCACTGATAAGTATATGCTGAGTCTGGTCAAACGGAACAAGGAAGGGTTTGTTCCTATACCAGCAATTGCATCTTTTAGGAAAATGAAGAAGCTCACTAGAGACCATTTATTTATTGCTGCTGCACTGATGGAATCTTCACTGCTTGTTGTTAGTGGTGATGGGAAGAGGGTTAAGCGGCTCAATCCACTTCGTTTCAATGAAGTTAAAGATCATAAGTTATGTACTGTTTTGGCAGAGAATTTGCCAGAGGACCATTCAAGGGAGAACATTCGGCAAATATTCCAAATAGCTGGAAATATAAAAAAGATAACCATAAATGACCCGCGTTCTGCTGCAGCCTCTGCTAAACATATCAAGCAAGACAAGTTTATTGGTAGTAAGTTGCATGCTCTTGTGGAATATGAGACTATTGAGGCTGCTGAGAAAGCTGTGGCAATGTTAAATAATGAACAAGACTGGAGAAATGGCATGCGGGTTAAATTCCTCAGTCGGATGGCGGGGAAGTATGCACAAAAAAAACAACCTTCGAAGGGATCTAATTCTGAGAAAAATAGCTCTGGCCATGTATCTGAGAAAACTGGAGATGAGGAGAATCATGGCTCACATGAGTATCGTGAAGATATGCCTGTGGTAGAGGATGGGGAGCATTTGTCAAAGGATAAAGGTGGGCAGAGGAACTCTAAACAAGGAAGATCAAGAAAGCAAAAATACCGTGCTACAAATGGAATGGGCCATGGAGGTACATCATCTATTCGAACTACCGAGCCATCAAAACCACCTCCTGGACCAAAAATGCCTGATGGAACACGGGGTTTTGCTATCGGACGAGGTCGCCCTCTTGTTCCTGCATCGAATTAG
Protein sequence

>Msa0277580

METVEQVLLPATATAPTAGGDSTASPPPLGDSVIMTPDPVIDVVDVAEPEIHALISDEEHDHEREIEIDHDFDHENELDDQRDEGQERDHVPETVVSLDDLKLKIIKQVEYYFSDENLPTDKYMLSLVKRNKEGFVPIPAIASFRKMKKLTRDHLFIAAALMESSLLVVSGDGKRVKRLNPLRFNEVKDHKLCTVLAENLPEDHSRENIRQIFQIAGNIKKITINDPRSAAASAKHIKQDKFIGSKLHALVEYETIEAAEKAVAMLNNEQDWRNGMRVKFLSRMAGKYAQKKQPSKGSNSEKNSSGHVSEKTGDEENHGSHEYREDMPVVEDGEHLSKDKGGQRNSKQGRSRKQKYRATNGMGHGGTSSIRTTEPSKPPPGPKMPDGTRGFAIGRGRPLVPASN*