AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236920 MtrunA17_Chr2g0286061 93.103 406 26 2 1 404 1 406 0.0 759
Msa0236920 MtrunA17_Chr4g0045341 39.228 311 166 5 100 399 98 396 7.62e-55 186
Msa0236920 MtrunA17_Chr7g0276671 35.692 325 174 7 104 399 117 435 4.78e-54 185
Msa0236920 MtrunA17_Chr5g0440821 41.111 90 46 3 91 180 308 390 1.14e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236920 AT5G46250.1 51.467 375 154 8 43 404 56 415 9.10e-117 347
Msa0236920 AT5G46250.3 54.930 284 111 6 43 324 56 324 5.62e-93 283
Msa0236920 AT5G46250.2 54.930 284 111 6 43 324 56 324 7.69e-93 283
Msa0236920 AT3G19090.1 34.650 329 172 7 99 403 142 451 2.62e-49 173
Msa0236920 AT3G19090.2 32.303 356 171 9 99 403 142 478 8.31e-45 162
Msa0236920 AT2G43970.1 35.865 237 129 6 79 297 159 390 4.11e-40 150
Msa0236920 AT2G43970.2 32.203 236 123 6 79 297 159 374 2.51e-29 119
Msa0236920 AT5G21160.1 49.315 73 35 1 100 172 277 347 2.69e-13 72.4
Msa0236920 AT5G21160.2 49.315 73 35 1 100 172 277 347 3.08e-13 72.0
Msa0236920 AT5G21160.3 49.315 73 35 1 100 172 277 347 3.08e-13 72.0
Msa0236920 AT4G32720.1 27.468 233 116 8 105 307 14 223 2.39e-12 68.6
Msa0236920 AT4G32720.2 27.468 233 116 8 105 307 14 223 2.58e-12 68.6

Find 130 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTTACTTTCCAGCTATT+TGG 0.150420 2_2:-9993302 None:intergenic
TTTGCTTGAGTCGGGGTTTA+AGG 0.158696 2_2:+9995894 Msa0236920:three_prime_UTR
ATCAAGCAAGACAAGTTTAT+TGG 0.228102 2_2:+9993480 Msa0236920:CDS
GAAATCAGAGCATGAATTTC+AGG 0.229374 2_2:-9991367 None:intergenic
AGCAGAACGCAGGTCATTTA+TGG 0.236312 2_2:-9993439 None:intergenic
TCCAATGAAACAACGGTTTC+AGG 0.253195 2_2:-9991496 None:intergenic
GTTGGAGCGGTGGCGGTGGC+TGG 0.289458 2_2:-9991250 None:intergenic
TTCATCGTCATTGTTTAAAC+TGG 0.304117 2_2:+9996122 Msa0236920:three_prime_UTR
TTTCTCTCTCCGCAGTCTTT+CGG 0.338699 2_2:-9991126 None:intergenic
TTCCTAAAAGATGCAATTGC+TGG 0.353183 2_2:-9992910 None:intergenic
ACATCAACAACGTCAATAAC+TGG 0.359096 2_2:-9991337 None:intergenic
TCTCCAGTTATGTACTGTTT+TGG 0.360923 2_2:+9993230 Msa0236920:intron
GCAAGATTGATGCCAGATAA+TGG 0.368868 2_2:+9995806 Msa0236920:exon
GTGCAGCAGCAATAAATAAA+TGG 0.369240 2_2:-9992954 None:intergenic
GTAAAATACAGTCCATTATC+TGG 0.376673 2_2:-9995818 None:intergenic
AAAGATGCAATTGCTGGTAT+AGG 0.390615 2_2:-9992904 None:intergenic
TTGCTTGAGTCGGGGTTTAA+GGG 0.392886 2_2:+9995895 Msa0236920:three_prime_UTR
GCCTGAAACCGTTGTTTCAT+TGG 0.396718 2_2:+9991495 Msa0236920:CDS
AGACAAGTTTATTGGTAGTA+AGG 0.405899 2_2:+9993488 Msa0236920:CDS
GTCGGGGTTTAAGGGTTTGT+TGG 0.407729 2_2:+9995903 Msa0236920:three_prime_UTR
CTCAATGGAAACCGTCGAAC+AGG 0.411833 2_2:+9991219 Msa0236920:exon
GTGGAATCGCCGCCGGCGGT+TGG 0.413996 2_2:-9991268 None:intergenic
GGCCATGTATCTGAGAAAAC+TGG 0.414781 2_2:+9994731 Msa0236920:CDS
TATGTGTGTTTGCTTGAGTC+GGG 0.419152 2_2:+9995886 Msa0236920:three_prime_UTR
CAATGAAGTTAAAGATCATA+AGG 0.420153 2_2:+9993141 Msa0236920:CDS
GCCGGCGGTTGGAGCGGTGG+CGG 0.422816 2_2:-9991257 None:intergenic
GAGCATTTGTCAAAGGATAA+AGG 0.424365 2_2:+9995495 Msa0236920:CDS
AATGAACAAGACTGGAGAAA+TGG 0.429220 2_2:+9994538 Msa0236920:CDS
TGGGAACTGTAGGTTGTTAG+TGG 0.430272 2_2:+9993079 Msa0236920:intron
GGTTTAAGGGTTTGTTGGAC+TGG 0.433893 2_2:+9995908 Msa0236920:three_prime_UTR
TTCTCCCTTGAATGGTCCTC+TGG 0.434053 2_2:-9993264 None:intergenic
TTGTTAGTGGTGATGGGAAG+AGG 0.434607 2_2:+9993092 Msa0236920:CDS
TTTGATATTGATTGAAATGA+TGG 0.435471 2_2:+9996091 Msa0236920:three_prime_UTR
ACCGCCACCGCTCCAACCGC+CGG 0.438937 2_2:+9991256 Msa0236920:CDS
GCCGAATGTTCTCCCTTGAA+TGG 0.443285 2_2:-9993272 None:intergenic
GAGCGGAGGAGGCGAGGCGG+TGG 0.443328 2_2:-9991287 None:intergenic
CTATGTGTGTTTGCTTGAGT+CGG 0.443755 2_2:+9995885 Msa0236920:three_prime_UTR
CTGTAGGTTGTTAGTGGTGA+TGG 0.452864 2_2:+9993085 Msa0236920:intron
GGCGGTTGGAGCGGTGGCGG+TGG 0.453662 2_2:-9991254 None:intergenic
ACCATTCAAGGGAGAACATT+CGG 0.456865 2_2:+9993271 Msa0236920:CDS
GAGCGGTGGCGGTGGCTGGA+AGG 0.458842 2_2:-9991246 None:intergenic
TCTACTTTGGAGACGAGTTA+AGG 0.460696 2_2:-9996149 None:intergenic
TCTGTAGTAAAACTCTACTT+TGG 0.465182 2_2:-9996162 None:intergenic
TGACCATTCTCTCTCCTCAA+TGG 0.468055 2_2:+9991204 Msa0236920:exon
CTGTTCGACGGTTTCCATTG+AGG 0.470017 2_2:-9991218 None:intergenic
ACCGCCTCGCCTCCTCCGCT+CGG 0.470649 2_2:+9991289 Msa0236920:CDS
GCAAAACCCCGTGTTCCATC+AGG 0.471767 2_2:-9995744 None:intergenic
CGGCAAATATTCCAAATAGC+TGG 0.472406 2_2:+9993291 Msa0236920:CDS
TTCAATCAATATCAAACAAG+TGG 0.474912 2_2:-9996084 None:intergenic
TGATAAGTATATGCTGAGTC+TGG 0.484072 2_2:+9991856 Msa0236920:CDS
TACCGTGCTACAAATGGAAT+GGG 0.484889 2_2:+9995561 Msa0236920:CDS
ATTTATTGCTGCTGCACTGA+TGG 0.489389 2_2:+9992960 Msa0236920:CDS
ATTTGCCAGAGGACCATTCA+AGG 0.491971 2_2:+9993259 Msa0236920:CDS
CTTGATGATCAGCGTGATGA+AGG 0.496103 2_2:+9991454 Msa0236920:CDS
ACAGAATCACCGAGCGGAGG+AGG 0.503428 2_2:-9991298 None:intergenic
TGTTAGTGGTGATGGGAAGA+GGG 0.503484 2_2:+9993093 Msa0236920:CDS
AAACGGAACAAGGAAGGGTT+TGG 0.504737 2_2:+9991881 Msa0236920:CDS
TTAACTTCATTGAAACGAAG+TGG 0.508604 2_2:-9993130 None:intergenic
ATATGCTGAGTCTGGTCAAA+CGG 0.509288 2_2:+9991864 Msa0236920:CDS
GCCGCCGGCGGTTGGAGCGG+TGG 0.509707 2_2:-9991260 None:intergenic
CGACTCAAGCAAACACACAT+AGG 0.509935 2_2:-9995884 None:intergenic
TTTCCATTGAGGAGAGAGAA+TGG 0.513378 2_2:-9991207 None:intergenic
TGATCAGCGTGATGAAGGTC+AGG 0.513395 2_2:+9991459 Msa0236920:CDS
TCTGTAGTTGCATGCTCTTG+TGG 0.515273 2_2:+9994380 Msa0236920:intron
ATCGCCGCCGGCGGTTGGAG+CGG 0.517278 2_2:-9991263 None:intergenic
TGCTACATAGATTCCTCGTA+TGG 0.517319 2_2:-9996036 None:intergenic
ACAACGTCAATAACTGGATC+GGG 0.520693 2_2:-9991331 None:intergenic
TGAAGATATGCCTGTGGTAG+AGG 0.523979 2_2:+9994787 Msa0236920:CDS
CAAGCTCAAGATAATTAAGC+AGG 0.524515 2_2:+9991525 Msa0236920:CDS
GGCGGTGGAATCGCCGCCGG+CGG 0.525366 2_2:-9991272 None:intergenic
ATACCGTGCTACAAATGGAA+TGG 0.525953 2_2:+9995560 Msa0236920:CDS
ATCGTCATTGTTTAAACTGG+AGG 0.526836 2_2:+9996125 Msa0236920:three_prime_UTR
ATCTGGTGAAAGGTAGTGTT+TGG 0.533806 2_2:+9995947 Msa0236920:three_prime_UTR
ATCACCGAGCGGAGGAGGCG+AGG 0.534053 2_2:-9991293 None:intergenic
ATATTGATTGAAATGATGGT+TGG 0.534858 2_2:+9996095 Msa0236920:three_prime_UTR
TGTTAAATAATGAACAAGAC+TGG 0.534955 2_2:+9994530 Msa0236920:CDS
GCCACCGCTCCAACCGCCGG+CGG 0.538281 2_2:+9991259 Msa0236920:CDS
CGAGGCGGTGGAATCGCCGC+CGG 0.538341 2_2:-9991275 None:intergenic
GAGCCATCAAAACCACCTCC+TGG 0.540278 2_2:+9995711 Msa0236920:CDS
CAATCTTGCTAATTCGATGC+AGG 0.540489 2_2:-9995792 None:intergenic
CAGAGGCTGCAGCAGAACGC+AGG 0.548626 2_2:-9993449 None:intergenic
TTGTGGCTCAATCTGGTGAA+AGG 0.551608 2_2:+9995937 Msa0236920:three_prime_UTR
AACAACGTCAATAACTGGAT+CGG 0.559673 2_2:-9991332 None:intergenic
GAGTCTGGTCAAACGGAACA+AGG 0.566482 2_2:+9991871 Msa0236920:CDS
CTGGTCAAACGGAACAAGGA+AGG 0.570679 2_2:+9991875 Msa0236920:CDS
TAGCAATATTTCTGTTGAAG+TGG 0.573432 2_2:+9996054 Msa0236920:three_prime_UTR
TGTAGGTTGTTAGTGGTGAT+GGG 0.579631 2_2:+9993086 Msa0236920:intron
GGATGGGGAGCATTTGTCAA+AGG 0.582385 2_2:+9995488 Msa0236920:intron
CAAAGGATAAAGGCGGGCAG+AGG 0.583644 2_2:+9995505 Msa0236920:CDS
TCAGAATTAGATCCCTTCGA+AGG 0.583816 2_2:-9994695 None:intergenic
GACTCAAGCAAACACACATA+GGG 0.586099 2_2:-9995883 None:intergenic
ATCTGAGAAAACTGGAGATG+AGG 0.586120 2_2:+9994739 Msa0236920:CDS
ACTGGAGATGAGGAGAATCA+TGG 0.586230 2_2:+9994749 Msa0236920:CDS
TACCCATTCCATTTGTAGCA+CGG 0.586324 2_2:-9995563 None:intergenic
GAAATACACACCTCTACCAC+AGG 0.587429 2_2:-9994797 None:intergenic
TGGTGAAAGGTAGTGTTTGG+TGG 0.588883 2_2:+9995950 Msa0236920:three_prime_UTR
TGGTCAAACGGAACAAGGAA+GGG 0.591602 2_2:+9991876 Msa0236920:CDS
GGTTAAATTCCTCAGTCGGA+TGG 0.592421 2_2:+9994567 Msa0236920:CDS
CTCAGCATATACTTATCAGT+GGG 0.596104 2_2:-9991851 None:intergenic
TTGCTTGATATGTTTAGCAG+AGG 0.598420 2_2:-9993466 None:intergenic
TGCGGGTTAAATTCCTCAGT+CGG 0.602716 2_2:+9994563 Msa0236920:CDS
ATTTGTCAAAGGATAAAGGC+GGG 0.605783 2_2:+9995499 Msa0236920:CDS
TAATTCGATGCAGGAACAAG+AGG 0.607177 2_2:-9995783 None:intergenic
TGGAAGGAGAACCTGTTCGA+CGG 0.608516 2_2:-9991230 None:intergenic
AGACTGGAGAAATGGCATGC+GGG 0.610780 2_2:+9994546 Msa0236920:CDS
TGTGGAATATGAGACTATTG+AGG 0.615434 2_2:+9994398 Msa0236920:CDS
AGCAATATTTCTGTTGAAGT+GGG 0.622830 2_2:+9996055 Msa0236920:three_prime_UTR
TTTGCCAGAGGACCATTCAA+GGG 0.624015 2_2:+9993260 Msa0236920:CDS
TCTGAGAAACCGAAAGACTG+CGG 0.634642 2_2:+9991117 Msa0236920:five_prime_UTR
TAAATTCCTCAGTCGGATGG+CGG 0.637029 2_2:+9994570 Msa0236920:CDS
TTGGTAGTCCTCACCATACG+AGG 0.637094 2_2:+9996023 Msa0236920:three_prime_UTR
GAATAGATGATGTACCTCCA+TGG 0.638936 2_2:-9995680 None:intergenic
AACTAACCGCCATCCGACTG+AGG 0.641081 2_2:-9994576 None:intergenic
ACTCAGCATATACTTATCAG+TGG 0.648270 2_2:-9991852 None:intergenic
AATTCGATGCAGGAACAAGA+GGG 0.651066 2_2:-9995782 None:intergenic
CATAGATTCCTCGTATGGTG+AGG 0.655098 2_2:-9996031 None:intergenic
ACCGAGCGGAGGAGGCGAGG+CGG 0.656376 2_2:-9991290 None:intergenic
AAGACTGGAGAAATGGCATG+CGG 0.667296 2_2:+9994545 Msa0236920:CDS
GTGATGGGAAGAGGGTTAAG+CGG 0.667642 2_2:+9993101 Msa0236920:CDS
TTTGGCAGAGAATTTGCCAG+AGG 0.668529 2_2:+9993248 Msa0236920:CDS
GAGATCATCCAATGAAACAA+CGG 0.668615 2_2:-9991503 None:intergenic
AGAGCAGAAAAGAAAGAGCG+TGG 0.670989 2_2:+9991148 Msa0236920:five_prime_UTR
ATGTGTGTTTGCTTGAGTCG+GGG 0.673705 2_2:+9995887 Msa0236920:three_prime_UTR
TGCATTGTTCCAGGCCATGG+AGG 0.674250 2_2:+9995666 Msa0236920:intron
ATAACAGAATCACCGAGCGG+AGG 0.681140 2_2:-9991301 None:intergenic
GGGCAGAGGAACTCTAAACA+AGG 0.698126 2_2:+9995519 Msa0236920:CDS
CATTTGTCAAAGGATAAAGG+CGG 0.723075 2_2:+9995498 Msa0236920:CDS
AAAATGCCTGATGGAACACG+GGG 0.728757 2_2:+9995738 Msa0236920:CDS
GTATCGTGAAGATATGCCTG+TGG 0.762641 2_2:+9994781 Msa0236920:CDS
ATGATAACAGAATCACCGAG+CGG 0.780458 2_2:-9991304 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATACCAAATATTAT+CGG + chr2_2:9994855-9994874 Msa0236920:intron 10.0%
!!! TAAAACATTTTTAGATTATT+AGG + chr2_2:9995977-9995996 Msa0236920:three_prime_UTR 10.0%
!! ATCATTGCTTATATTATAAA+TGG - chr2_2:9992530-9992549 None:intergenic 15.0%
!!! TTTTGTATATTACTTTTTGT+TGG + chr2_2:9994114-9994133 Msa0236920:intron 15.0%
!! ATAAAGGCTTAATTATAATA+TGG - chr2_2:9994460-9994479 None:intergenic 15.0%
!!! AATATGATTTTATACTGAAA+GGG - chr2_2:9994888-9994907 None:intergenic 15.0%
!!! TAATATGATTTTATACTGAA+AGG - chr2_2:9994889-9994908 None:intergenic 15.0%
!! TCTTCTTATCTATATATATT+CGG + chr2_2:9995586-9995605 Msa0236920:intron 15.0%
!!! GAAATATGAAACTTTTTTTT+TGG + chr2_2:9996004-9996023 Msa0236920:three_prime_UTR 15.0%
!! GTGAAAAATGCAAAATTATT+AGG - chr2_2:9991700-9991719 None:intergenic 20.0%
!! TCCAAGTATAACAAATAAAT+TGG + chr2_2:9992007-9992026 Msa0236920:intron 20.0%
!!! ACCAATTTATTTGTTATACT+TGG - chr2_2:9992011-9992030 None:intergenic 20.0%
!! AAAAAATTGCAAATTGCAAA+TGG - chr2_2:9992409-9992428 None:intergenic 20.0%
!!! TGATTAGTGATTTTAATTGA+AGG + chr2_2:9992462-9992481 Msa0236920:intron 20.0%
!!! GATTAGTGATTTTAATTGAA+GGG + chr2_2:9992463-9992482 Msa0236920:intron 20.0%
!!! ATTAGTGATTTTAATTGAAG+GGG + chr2_2:9992464-9992483 Msa0236920:intron 20.0%
!!! ATCATAAGGTATTTACTTAT+AGG + chr2_2:9993155-9993174 Msa0236920:intron 20.0%
!! GTTAATAACTAACCATAATA+TGG + chr2_2:9993527-9993546 Msa0236920:intron 20.0%
!! TCTTTATTATAACTACAGTT+AGG + chr2_2:9993680-9993699 Msa0236920:intron 20.0%
!! CTTTATTATAACTACAGTTA+GGG + chr2_2:9993681-9993700 Msa0236920:intron 20.0%
!! GAACATAATTATTTACAAAG+TGG - chr2_2:9993927-9993946 None:intergenic 20.0%
!! ATTACAGTATAACAAAATTG+AGG - chr2_2:9994095-9994114 None:intergenic 20.0%
!! TATAATTAAGCCTTTATATC+TGG + chr2_2:9994463-9994482 Msa0236920:intron 20.0%
!! TTGACATCATAATAATTGAT+AGG + chr2_2:9994973-9994992 Msa0236920:intron 20.0%
!!! ATACTTATAGTTTTGTAGTT+TGG + chr2_2:9995032-9995051 Msa0236920:intron 20.0%
!! CTTCTTATCTATATATATTC+GGG + chr2_2:9995587-9995606 Msa0236920:intron 20.0%
!! TTCTTATCTATATATATTCG+GGG + chr2_2:9995588-9995607 Msa0236920:intron 20.0%
!!! TTTGATATTGATTGAAATGA+TGG + chr2_2:9996091-9996110 Msa0236920:three_prime_UTR 20.0%
! TAAAACCTAGTAACTGTAAT+TGG + chr2_2:9991548-9991567 Msa0236920:intron 25.0%
! AAATTGAACTGTAGTTTGAT+AGG + chr2_2:9991662-9991681 Msa0236920:intron 25.0%
!! TTTGCATTTTTCACATTTCT+AGG + chr2_2:9991706-9991725 Msa0236920:intron 25.0%
!! TTGCATTTTTCACATTTCTA+GGG + chr2_2:9991707-9991726 Msa0236920:intron 25.0%
! ATCTCAACAATAACAACTTA+GGG - chr2_2:9991768-9991787 None:intergenic 25.0%
! TATCTCAACAATAACAACTT+AGG - chr2_2:9991769-9991788 None:intergenic 25.0%
! TATGACATAAGGAATAATCT+GGG + chr2_2:9992056-9992075 Msa0236920:intron 25.0%
! TGTAGTAGATCTTAATTGAA+AGG + chr2_2:9992092-9992111 Msa0236920:intron 25.0%
! CTTAATTGAAAGGTAAATGT+TGG + chr2_2:9992102-9992121 Msa0236920:intron 25.0%
! AGCATATTTATCAATGCTAT+TGG + chr2_2:9992375-9992394 Msa0236920:intron 25.0%
! GCATATTTATCAATGCTATT+GGG + chr2_2:9992376-9992395 Msa0236920:intron 25.0%
! TACTTCATTATATGAAAACC+TGG + chr2_2:9992613-9992632 Msa0236920:intron 25.0%
! ATTACTAGGAATTACATGAT+AGG - chr2_2:9992869-9992888 None:intergenic 25.0%
! TTAAGAAAAATTCCTCTCTT+GGG + chr2_2:9993060-9993079 Msa0236920:intron 25.0%
! CAATGAAGTTAAAGATCATA+AGG + chr2_2:9993141-9993160 Msa0236920:CDS 25.0%
!!! GTTATACTAAGTCTTATTCT+TGG + chr2_2:9993207-9993226 Msa0236920:intron 25.0%
! AATAACTAACCATAATATGG+AGG + chr2_2:9993530-9993549 Msa0236920:intron 25.0%
!!! TTTACCTTTTTCACTTGATA+TGG + chr2_2:9993635-9993654 Msa0236920:intron 25.0%
! ATATCCATATCAAGTGAAAA+AGG - chr2_2:9993642-9993661 None:intergenic 25.0%
!! GACTTTAGAGATTCATTAAA+TGG - chr2_2:9993747-9993766 None:intergenic 25.0%
!!! TTGCATTGACTCAATTTTTT+AGG + chr2_2:9993846-9993865 Msa0236920:intron 25.0%
!!! TGCATTGACTCAATTTTTTA+GGG + chr2_2:9993847-9993866 Msa0236920:intron 25.0%
!!! ATTGAAGAGCATTTTAAATG+TGG - chr2_2:9994250-9994269 None:intergenic 25.0%
! TGTTAAATAATGAACAAGAC+TGG + chr2_2:9994530-9994549 Msa0236920:CDS 25.0%
!! TTGATAGTAGTTTATGTTGA+TGG + chr2_2:9994632-9994651 Msa0236920:intron 25.0%
! TGGTATTAAAAATACTAGCT+AGG - chr2_2:9994847-9994866 None:intergenic 25.0%
!! TGTCAAAACATCTTGATAAT+TGG - chr2_2:9994959-9994978 None:intergenic 25.0%
!!! AGTTTTGTAGTTTGGATTTA+TGG + chr2_2:9995040-9995059 Msa0236920:intron 25.0%
!!! AACTTTTGCTTTTCATAAGA+AGG - chr2_2:9995117-9995136 None:intergenic 25.0%
!!! AAAAGCAAAAGTTCTAAGTT+TGG + chr2_2:9995124-9995143 Msa0236920:intron 25.0%
!!! CTTTAGAATCTCAAATAAAC+AGG - chr2_2:9995294-9995313 None:intergenic 25.0%
! CAACGCATAATTGAAAATAA+CGG - chr2_2:9995381-9995400 None:intergenic 25.0%
! ACCAGTTATTAGAATGAAAA+GGG - chr2_2:9995646-9995665 None:intergenic 25.0%
! AACCAGTTATTAGAATGAAA+AGG - chr2_2:9995647-9995666 None:intergenic 25.0%
!! AGTGACGTACAATTTTAAAT+TGG + chr2_2:9995856-9995875 Msa0236920:three_prime_UTR 25.0%
!! GTGACGTACAATTTTAAATT+GGG + chr2_2:9995857-9995876 Msa0236920:three_prime_UTR 25.0%
!! TGACGTACAATTTTAAATTG+GGG + chr2_2:9995858-9995877 Msa0236920:three_prime_UTR 25.0%
!!! ACATTTTTAGATTATTAGGC+TGG + chr2_2:9995981-9996000 Msa0236920:three_prime_UTR 25.0%
!!! CATTTTTAGATTATTAGGCT+GGG + chr2_2:9995982-9996001 Msa0236920:three_prime_UTR 25.0%
! TTCAATCAATATCAAACAAG+TGG - chr2_2:9996087-9996106 None:intergenic 25.0%
!! ATATTGATTGAAATGATGGT+TGG + chr2_2:9996095-9996114 Msa0236920:three_prime_UTR 25.0%
!! AAATCGTTAGATTTTACTAG+TGG + chr2_2:9996254-9996273 Msa0236920:three_prime_UTR 25.0%
!! ACATTTCTAGGGTTTATGTT+TGG + chr2_2:9991718-9991737 Msa0236920:intron 30.0%
! CTGTTTGTGTTGAATTTTGA+AGG + chr2_2:9991799-9991818 Msa0236920:intron 30.0%
!! TTTGTGTTGAATTTTGAAGG+TGG + chr2_2:9991802-9991821 Msa0236920:intron 30.0%
!!! GTAAGTGCTCAAGTTTTTTT+TGG + chr2_2:9991903-9991922 Msa0236920:intron 30.0%
!! TTGTTCTAGAGATGTTCATT+TGG + chr2_2:9991975-9991994 Msa0236920:intron 30.0%
!! TGTTCTAGAGATGTTCATTT+GGG + chr2_2:9991976-9991995 Msa0236920:intron 30.0%
TATTGCTGAGTAGAATTTGT+TGG + chr2_2:9992032-9992051 Msa0236920:intron 30.0%
! ATTGCTGAGTAGAATTTGTT+GGG + chr2_2:9992033-9992052 Msa0236920:intron 30.0%
!! AATTTGTTGGGTATGACATA+AGG + chr2_2:9992045-9992064 Msa0236920:intron 30.0%
GTATGACATAAGGAATAATC+TGG + chr2_2:9992055-9992074 Msa0236920:intron 30.0%
GATTAGATATTCCTCTTTCT+AGG + chr2_2:9992124-9992143 Msa0236920:intron 30.0%
TATCAGTACTTCACAACAAT+GGG - chr2_2:9992195-9992214 None:intergenic 30.0%
TTATCAGTACTTCACAACAA+TGG - chr2_2:9992196-9992215 None:intergenic 30.0%
CATCTGTTAAAGTTCATGAT+AGG + chr2_2:9992434-9992453 Msa0236920:intron 30.0%
! TGAAAACCTGGATGAAATTT+TGG + chr2_2:9992625-9992644 Msa0236920:intron 30.0%
CATTACATGTTAACAGAACA+AGG - chr2_2:9993015-9993034 None:intergenic 30.0%
! CAAGAGAGGAATTTTTCTTA+AGG - chr2_2:9993061-9993080 None:intergenic 30.0%
CTTAAGAAAAATTCCTCTCT+TGG + chr2_2:9993059-9993078 Msa0236920:intron 30.0%
TTAACTTCATTGAAACGAAG+TGG - chr2_2:9993133-9993152 None:intergenic 30.0%
GGTATTTACTTATAGGAACA+TGG + chr2_2:9993162-9993181 Msa0236920:intron 30.0%
CTGGAAAAATTGATGAGTTA+AGG - chr2_2:9993332-9993351 None:intergenic 30.0%
ATCAAGCAAGACAAGTTTAT+TGG + chr2_2:9993480-9993499 Msa0236920:CDS 30.0%
! AGACAAGTTTATTGGTAGTA+AGG + chr2_2:9993488-9993507 Msa0236920:CDS 30.0%
AATTAAGAGCCTCCATATTA+TGG - chr2_2:9993542-9993561 None:intergenic 30.0%
! TTTTCATTGCATCCATTTTG+AGG + chr2_2:9993561-9993580 Msa0236920:intron 30.0%
TGTGATTCAAATCCTCAAAA+TGG - chr2_2:9993576-9993595 None:intergenic 30.0%
ATCAAGTGAAAAAGGTAAAG+TGG - chr2_2:9993634-9993653 None:intergenic 30.0%
!!! ACTCTTTTTTCTGTTTCAGT+TGG + chr2_2:9993979-9993998 Msa0236920:intron 30.0%
TAACCATTTGTGTGTTTGAT+TGG + chr2_2:9994003-9994022 Msa0236920:intron 30.0%
AACCATTTGTGTGTTTGATT+GGG + chr2_2:9994004-9994023 Msa0236920:intron 30.0%
TATAACAAAATTGAGGTGGA+AGG - chr2_2:9994088-9994107 None:intergenic 30.0%
ACAGTATAACAAAATTGAGG+TGG - chr2_2:9994092-9994111 None:intergenic 30.0%
!! GAAAGTATCTCTTTAACATG+AGG - chr2_2:9994199-9994218 None:intergenic 30.0%
TGTTAAAGAGATACTTTCCT+TGG + chr2_2:9994201-9994220 Msa0236920:intron 30.0%
GTTAAAGAGATACTTTCCTT+GGG + chr2_2:9994202-9994221 Msa0236920:intron 30.0%
AAAGCTAAAAAGTTAACCCA+AGG - chr2_2:9994221-9994240 None:intergenic 30.0%
!!! GGTTAACTTTTTAGCTTTTC+TGG + chr2_2:9994223-9994242 Msa0236920:intron 30.0%
TATGGAGATAAAGGAATCAA+CGG - chr2_2:9994325-9994344 None:intergenic 30.0%
AACATTCGATATGGAGATAA+AGG - chr2_2:9994334-9994353 None:intergenic 30.0%
TGTGAAAACAACATTCGATA+TGG - chr2_2:9994343-9994362 None:intergenic 30.0%
AGCAAACAATCCAGATATAA+AGG - chr2_2:9994476-9994495 None:intergenic 30.0%
ACAAAAAAAACAACCTTCGA+AGG + chr2_2:9994682-9994701 Msa0236920:CDS 30.0%
CAAAAAAAACAACCTTCGAA+GGG + chr2_2:9994683-9994702 Msa0236920:CDS 30.0%
! AATTCTGAGAAAAATAGCTC+TGG + chr2_2:9994710-9994729 Msa0236920:CDS 30.0%
GGTAATGAACCGATAATATT+TGG - chr2_2:9994867-9994886 None:intergenic 30.0%
ATAAGCAAAAACTCATAGAC+CGG - chr2_2:9995247-9995266 None:intergenic 30.0%
TCAAATAAACAGGTGAATAC+TGG - chr2_2:9995284-9995303 None:intergenic 30.0%
AAGCCTGCATAATCAATTTA+TGG + chr2_2:9995311-9995330 Msa0236920:intron 30.0%
! AAGCAACACATGTTTTACTT+TGG + chr2_2:9995337-9995356 Msa0236920:intron 30.0%
! AGCAACACATGTTTTACTTT+GGG + chr2_2:9995338-9995357 Msa0236920:intron 30.0%
!! CGTTATTTTCAATTATGCGT+TGG + chr2_2:9995379-9995398 Msa0236920:intron 30.0%
! TCCCTTTTCATTCTAATAAC+TGG + chr2_2:9995642-9995661 Msa0236920:intron 30.0%
GTAAAATACAGTCCATTATC+TGG - chr2_2:9995821-9995840 None:intergenic 30.0%
! GACGTACAATTTTAAATTGG+GGG + chr2_2:9995859-9995878 Msa0236920:three_prime_UTR 30.0%
! TAGCAATATTTCTGTTGAAG+TGG + chr2_2:9996054-9996073 Msa0236920:three_prime_UTR 30.0%
! AGCAATATTTCTGTTGAAGT+GGG + chr2_2:9996055-9996074 Msa0236920:three_prime_UTR 30.0%
TTCATCGTCATTGTTTAAAC+TGG + chr2_2:9996122-9996141 Msa0236920:three_prime_UTR 30.0%
TCTGTAGTAAAACTCTACTT+TGG - chr2_2:9996165-9996184 None:intergenic 30.0%
! TTTTACTACAGATGAGGAAA+AGG + chr2_2:9996173-9996192 Msa0236920:three_prime_UTR 30.0%
!!! CAGTTTGTAGTTGTTTTAGA+CGG + chr2_2:9996209-9996228 Msa0236920:three_prime_UTR 30.0%
AACAACGTCAATAACTGGAT+CGG - chr2_2:9991335-9991354 None:intergenic 35.0%
ACATCAACAACGTCAATAAC+TGG - chr2_2:9991340-9991359 None:intergenic 35.0%
GAAATCAGAGCATGAATTTC+AGG - chr2_2:9991370-9991389 None:intergenic 35.0%
GAGATCATCCAATGAAACAA+CGG - chr2_2:9991506-9991525 None:intergenic 35.0%
CAAGCTCAAGATAATTAAGC+AGG + chr2_2:9991525-9991544 Msa0236920:CDS 35.0%
AAACGCCAATTACAGTTACT+AGG - chr2_2:9991556-9991575 None:intergenic 35.0%
TAACTGTAATTGGCGTTTGT+TGG + chr2_2:9991558-9991577 Msa0236920:intron 35.0%
CTCAGCATATACTTATCAGT+GGG - chr2_2:9991854-9991873 None:intergenic 35.0%
ACTCAGCATATACTTATCAG+TGG - chr2_2:9991855-9991874 None:intergenic 35.0%
TGATAAGTATATGCTGAGTC+TGG + chr2_2:9991856-9991875 Msa0236920:CDS 35.0%
ATTATGCATTGTGCTGTAAC+TGG + chr2_2:9991948-9991967 Msa0236920:intron 35.0%
TTATGCATTGTGCTGTAACT+GGG + chr2_2:9991949-9991968 Msa0236920:intron 35.0%
AAGTTCAAGAACCTAGAAAG+AGG - chr2_2:9992138-9992157 None:intergenic 35.0%
! GCACATATGTAATTTGTCAC+TGG - chr2_2:9992260-9992279 None:intergenic 35.0%
GAGTTACTGAGTTACACTTA+CGG + chr2_2:9992301-9992320 Msa0236920:intron 35.0%
AGTTACTGAGTTACACTTAC+GGG + chr2_2:9992302-9992321 Msa0236920:intron 35.0%
ATTCTGCCAAAATTTCATCC+AGG - chr2_2:9992634-9992653 None:intergenic 35.0%
ACAAGACATAAACAACGCTA+TGG - chr2_2:9992834-9992853 None:intergenic 35.0%
ACTGCATGAACAGAATTACT+AGG - chr2_2:9992883-9992902 None:intergenic 35.0%
AAAGATGCAATTGCTGGTAT+AGG - chr2_2:9992907-9992926 None:intergenic 35.0%
! TACCAGCAATTGCATCTTTT+AGG + chr2_2:9992908-9992927 Msa0236920:CDS 35.0%
TTCCTAAAAGATGCAATTGC+TGG - chr2_2:9992913-9992932 None:intergenic 35.0%
GTGCAGCAGCAATAAATAAA+TGG - chr2_2:9992957-9992976 None:intergenic 35.0%
ACATGTTAACAGAACAAGGA+AGG - chr2_2:9993011-9993030 None:intergenic 35.0%
TTCTTAAGGACTAGAAGTAG+AGG - chr2_2:9993047-9993066 None:intergenic 35.0%
! TCTCCAGTTATGTACTGTTT+TGG + chr2_2:9993230-9993249 Msa0236920:intron 35.0%
CATCTTACTTTCCAGCTATT+TGG - chr2_2:9993305-9993324 None:intergenic 35.0%
TTGCTTGATATGTTTAGCAG+AGG - chr2_2:9993469-9993488 None:intergenic 35.0%
GATATGATTGTGTGCTTAGT+TGG + chr2_2:9993657-9993676 Msa0236920:intron 35.0%
GTGGCCATTTACTTAGTTTA+GGG - chr2_2:9993908-9993927 None:intergenic 35.0%
AGTGGCCATTTACTTAGTTT+AGG - chr2_2:9993909-9993928 None:intergenic 35.0%
TACAGAGGGGTAAAATAGAA+TGG - chr2_2:9994366-9994385 None:intergenic 35.0%
TGTGGAATATGAGACTATTG+AGG + chr2_2:9994398-9994417 Msa0236920:CDS 35.0%
AATGAACAAGACTGGAGAAA+TGG + chr2_2:9994538-9994557 Msa0236920:CDS 35.0%
CGAGAAAAGAGAAAAGACAA+CGG - chr2_2:9994603-9994622 None:intergenic 35.0%
!! TGATGGTCATTTTATGCTTC+AGG + chr2_2:9994649-9994668 Msa0236920:intron 35.0%
!! GATGGTCATTTTATGCTTCA+GGG + chr2_2:9994650-9994669 Msa0236920:intron 35.0%
!! ATGGTCATTTTATGCTTCAG+GGG + chr2_2:9994651-9994670 Msa0236920:intron 35.0%
GCGCTACAATTATATCACTT+GGG + chr2_2:9994995-9995014 Msa0236920:intron 35.0%
CGCTACAATTATATCACTTG+GGG + chr2_2:9994996-9995015 Msa0236920:intron 35.0%
CAAAAAGTTGCACAAAAGAC+AGG - chr2_2:9995201-9995220 None:intergenic 35.0%
!! CAACTTTTTGTTATCCGATC+TGG + chr2_2:9995211-9995230 Msa0236920:intron 35.0%
CCACCATAAATTGATTATGC+AGG - chr2_2:9995317-9995336 None:intergenic 35.0%
CCTGCATAATCAATTTATGG+TGG + chr2_2:9995314-9995333 Msa0236920:intron 35.0%
! TACTTTGGGAATAAGTGCAT+TGG + chr2_2:9995352-9995371 Msa0236920:intron 35.0%
GGAAAAAATCTCTCACAAAC+AGG + chr2_2:9995400-9995419 Msa0236920:intron 35.0%
GAGCATTTGTCAAAGGATAA+AGG + chr2_2:9995495-9995514 Msa0236920:CDS 35.0%
CATTTGTCAAAGGATAAAGG+CGG + chr2_2:9995498-9995517 Msa0236920:CDS 35.0%
ATTTGTCAAAGGATAAAGGC+GGG + chr2_2:9995499-9995518 Msa0236920:CDS 35.0%
CAAAAATACCGTGCTACAAA+TGG + chr2_2:9995555-9995574 Msa0236920:CDS 35.0%
!!! TGTTGGACTGGTAAATTTTG+TGG + chr2_2:9995920-9995939 Msa0236920:three_prime_UTR 35.0%
! GTAAATTTTGTGGCTCAATC+TGG + chr2_2:9995930-9995949 Msa0236920:three_prime_UTR 35.0%
ATCGTCATTGTTTAAACTGG+AGG + chr2_2:9996125-9996144 Msa0236920:three_prime_UTR 35.0%
! GTAGAGTTTTACTACAGATG+AGG + chr2_2:9996167-9996186 Msa0236920:three_prime_UTR 35.0%
TTTCCATTGAGGAGAGAGAA+TGG - chr2_2:9991210-9991229 None:intergenic 40.0%
ATGATAACAGAATCACCGAG+CGG - chr2_2:9991307-9991326 None:intergenic 40.0%
ACAACGTCAATAACTGGATC+GGG - chr2_2:9991334-9991353 None:intergenic 40.0%
TCCAATGAAACAACGGTTTC+AGG - chr2_2:9991499-9991518 None:intergenic 40.0%
ATATGCTGAGTCTGGTCAAA+CGG + chr2_2:9991864-9991883 Msa0236920:CDS 40.0%
ACAAAGTTGCATTGTCAGCA+TGG + chr2_2:9992215-9992234 Msa0236920:intron 40.0%
GTTACTGAGTTACACTTACG+GGG + chr2_2:9992303-9992322 Msa0236920:intron 40.0%
TTACTGAGTTACACTTACGG+GGG + chr2_2:9992304-9992323 Msa0236920:intron 40.0%
ATTTATTGCTGCTGCACTGA+TGG + chr2_2:9992960-9992979 Msa0236920:CDS 40.0%
TGTAGGTTGTTAGTGGTGAT+GGG + chr2_2:9993086-9993105 Msa0236920:intron 40.0%
CTGCCAAAACAGTACATAAC+TGG - chr2_2:9993236-9993255 None:intergenic 40.0%
ACCATTCAAGGGAGAACATT+CGG + chr2_2:9993271-9993290 Msa0236920:CDS 40.0%
CGGCAAATATTCCAAATAGC+TGG + chr2_2:9993291-9993310 Msa0236920:CDS 40.0%
ACATCTTAGTTACACGAGAC+TGG - chr2_2:9993351-9993370 None:intergenic 40.0%
! CTGAGAAAGCAACTTTTGAC+TGG - chr2_2:9993709-9993728 None:intergenic 40.0%
! CCATTTACTTAGTTTAGGGC+TGG - chr2_2:9993904-9993923 None:intergenic 40.0%
CCAGCCCTAAACTAAGTAAA+TGG + chr2_2:9993901-9993920 Msa0236920:intron 40.0%
CACCCAATCAAACACACAAA+TGG - chr2_2:9994009-9994028 None:intergenic 40.0%
! TTTGTTGGTGAAGTCATCTG+CGG + chr2_2:9994129-9994148 Msa0236920:intron 40.0%
! CTTTAACATGAGGCATCTCA+TGG - chr2_2:9994189-9994208 None:intergenic 40.0%
ACGGCAAAGAAGAATATAGC+AGG - chr2_2:9994306-9994325 None:intergenic 40.0%
TGGATTGTTTGCTTAGTCTG+TGG + chr2_2:9994483-9994502 Msa0236920:intron 40.0%
ATTGCCACCTAAATCAGCAT+TGG - chr2_2:9994511-9994530 None:intergenic 40.0%
TCAGAATTAGATCCCTTCGA+AGG - chr2_2:9994698-9994717 None:intergenic 40.0%
! CTCCAGTTTTCTCAGATACA+TGG - chr2_2:9994736-9994755 None:intergenic 40.0%
ATCTGAGAAAACTGGAGATG+AGG + chr2_2:9994739-9994758 Msa0236920:CDS 40.0%
! ATCTTGATAATTGGCACGCT+TGG - chr2_2:9994950-9994969 None:intergenic 40.0%
GGCGCTACAATTATATCACT+TGG + chr2_2:9994994-9995013 Msa0236920:intron 40.0%
CCACAAAGACAAATGTAAGC+TGG - chr2_2:9995452-9995471 None:intergenic 40.0%
CCAGCTTACATTTGTCTTTG+TGG + chr2_2:9995449-9995468 Msa0236920:intron 40.0%
CTTACCTGTCATTACAGGAT+GGG + chr2_2:9995472-9995491 Msa0236920:intron 40.0%
TTACCTGTCATTACAGGATG+GGG + chr2_2:9995473-9995492 Msa0236920:intron 40.0%
ATACCGTGCTACAAATGGAA+TGG + chr2_2:9995560-9995579 Msa0236920:CDS 40.0%
TACCGTGCTACAAATGGAAT+GGG + chr2_2:9995561-9995580 Msa0236920:CDS 40.0%
TACCCATTCCATTTGTAGCA+CGG - chr2_2:9995566-9995585 None:intergenic 40.0%
ATAACTGGTTGCATTGTTCC+AGG + chr2_2:9995657-9995676 Msa0236920:intron 40.0%
GAATAGATGATGTACCTCCA+TGG - chr2_2:9995683-9995702 None:intergenic 40.0%
CAAAAATGCCTGATGGAACA+CGG + chr2_2:9995736-9995755 Msa0236920:CDS 40.0%
AAAAATGCCTGATGGAACAC+GGG + chr2_2:9995737-9995756 Msa0236920:CDS 40.0%
AATTCGATGCAGGAACAAGA+GGG - chr2_2:9995785-9995804 None:intergenic 40.0%
TAATTCGATGCAGGAACAAG+AGG - chr2_2:9995786-9995805 None:intergenic 40.0%
CAATCTTGCTAATTCGATGC+AGG - chr2_2:9995795-9995814 None:intergenic 40.0%
GCAAGATTGATGCCAGATAA+TGG + chr2_2:9995806-9995825 Msa0236920:exon 40.0%
GACTCAAGCAAACACACATA+GGG - chr2_2:9995886-9995905 None:intergenic 40.0%
CTATGTGTGTTTGCTTGAGT+CGG + chr2_2:9995885-9995904 Msa0236920:three_prime_UTR 40.0%
TATGTGTGTTTGCTTGAGTC+GGG + chr2_2:9995886-9995905 Msa0236920:three_prime_UTR 40.0%
ATCTGGTGAAAGGTAGTGTT+TGG + chr2_2:9995947-9995966 Msa0236920:three_prime_UTR 40.0%
TGCTACATAGATTCCTCGTA+TGG - chr2_2:9996039-9996058 None:intergenic 40.0%
! TCTACTTTGGAGACGAGTTA+AGG - chr2_2:9996152-9996171 None:intergenic 40.0%
TCTGAGAAACCGAAAGACTG+CGG + chr2_2:9991117-9991136 Msa0236920:five_prime_UTR 45.0%
TTTCTCTCTCCGCAGTCTTT+CGG - chr2_2:9991129-9991148 None:intergenic 45.0%
AGAGCAGAAAAGAAAGAGCG+TGG + chr2_2:9991148-9991167 Msa0236920:five_prime_UTR 45.0%
TGACCATTCTCTCTCCTCAA+TGG + chr2_2:9991204-9991223 Msa0236920:exon 45.0%
! CTTGATGATCAGCGTGATGA+AGG + chr2_2:9991454-9991473 Msa0236920:CDS 45.0%
! GCCTGAAACCGTTGTTTCAT+TGG + chr2_2:9991495-9991514 Msa0236920:CDS 45.0%
TGGTCAAACGGAACAAGGAA+GGG + chr2_2:9991876-9991895 Msa0236920:CDS 45.0%
AAACGGAACAAGGAAGGGTT+TGG + chr2_2:9991881-9991900 Msa0236920:CDS 45.0%
GTTACACTTACGGGGGATAA+TGG + chr2_2:9992311-9992330 Msa0236920:intron 45.0%
!! TAATTGAAGGGGTGCTTCGA+TGG + chr2_2:9992475-9992494 Msa0236920:intron 45.0%
ATTCCTCTCTTGGGAACTGT+AGG + chr2_2:9993069-9993088 Msa0236920:intron 45.0%
TGGGAACTGTAGGTTGTTAG+TGG + chr2_2:9993079-9993098 Msa0236920:intron 45.0%
CTGTAGGTTGTTAGTGGTGA+TGG + chr2_2:9993085-9993104 Msa0236920:intron 45.0%
!! TTGTTAGTGGTGATGGGAAG+AGG + chr2_2:9993092-9993111 Msa0236920:CDS 45.0%
!! TGTTAGTGGTGATGGGAAGA+GGG + chr2_2:9993093-9993112 Msa0236920:CDS 45.0%
TTTGGCAGAGAATTTGCCAG+AGG + chr2_2:9993248-9993267 Msa0236920:CDS 45.0%
ATTTGCCAGAGGACCATTCA+AGG + chr2_2:9993259-9993278 Msa0236920:CDS 45.0%
TTTGCCAGAGGACCATTCAA+GGG + chr2_2:9993260-9993279 Msa0236920:CDS 45.0%
AGCAGAACGCAGGTCATTTA+TGG - chr2_2:9993442-9993461 None:intergenic 45.0%
CTTGTCCATGGGTAAACAAG+GGG - chr2_2:9993807-9993826 None:intergenic 45.0%
CCTTGTCCATGGGTAAACAA+GGG - chr2_2:9993808-9993827 None:intergenic 45.0%
! CCTTGTTTACCCATGGACAA+GGG + chr2_2:9993806-9993825 Msa0236920:intron 45.0%
CTTGTTTACCCATGGACAAG+GGG + chr2_2:9993807-9993826 Msa0236920:intron 45.0%
TTCATTCACCCCTTGTCCAT+GGG - chr2_2:9993818-9993837 None:intergenic 45.0%
TTTCATTCACCCCTTGTCCA+TGG - chr2_2:9993819-9993838 None:intergenic 45.0%
CTGCAGCTTGAGCTGTATAT+AGG + chr2_2:9994045-9994064 Msa0236920:intron 45.0%
! TTGTTGGTGAAGTCATCTGC+GGG + chr2_2:9994130-9994149 Msa0236920:intron 45.0%
CGGGAACATTAGTAGTACTG+TGG + chr2_2:9994149-9994168 Msa0236920:intron 45.0%
! AAGAGCATGCAACTACAGAG+GGG - chr2_2:9994379-9994398 None:intergenic 45.0%
! CAAGAGCATGCAACTACAGA+GGG - chr2_2:9994380-9994399 None:intergenic 45.0%
! ACAAGAGCATGCAACTACAG+AGG - chr2_2:9994381-9994400 None:intergenic 45.0%
TCTGTAGTTGCATGCTCTTG+TGG + chr2_2:9994380-9994399 Msa0236920:intron 45.0%
!! TGTGGTGCCAATGCTGATTT+AGG + chr2_2:9994501-9994520 Msa0236920:intron 45.0%
AAGACTGGAGAAATGGCATG+CGG + chr2_2:9994545-9994564 Msa0236920:CDS 45.0%
! TGCGGGTTAAATTCCTCAGT+CGG + chr2_2:9994563-9994582 Msa0236920:CDS 45.0%
GGTTAAATTCCTCAGTCGGA+TGG + chr2_2:9994567-9994586 Msa0236920:CDS 45.0%
TAAATTCCTCAGTCGGATGG+CGG + chr2_2:9994570-9994589 Msa0236920:CDS 45.0%
GGCCATGTATCTGAGAAAAC+TGG + chr2_2:9994731-9994750 Msa0236920:CDS 45.0%
ACTGGAGATGAGGAGAATCA+TGG + chr2_2:9994749-9994768 Msa0236920:CDS 45.0%
GTATCGTGAAGATATGCCTG+TGG + chr2_2:9994781-9994800 Msa0236920:CDS 45.0%
TGAAGATATGCCTGTGGTAG+AGG + chr2_2:9994787-9994806 Msa0236920:CDS 45.0%
GAAATACACACCTCTACCAC+AGG - chr2_2:9994800-9994819 None:intergenic 45.0%
!! TTCTGAAGCTACGACAGACA+AGG - chr2_2:9995177-9995196 None:intergenic 45.0%
TGTGGCTTACCTGTCATTAC+AGG + chr2_2:9995467-9995486 Msa0236920:intron 45.0%
GCTTACCTGTCATTACAGGA+TGG + chr2_2:9995471-9995490 Msa0236920:intron 45.0%
! CGTGTTCCATCAGGCATTTT+TGG - chr2_2:9995738-9995757 None:intergenic 45.0%
AAAATGCCTGATGGAACACG+GGG + chr2_2:9995738-9995757 Msa0236920:CDS 45.0%
CGACTCAAGCAAACACACAT+AGG - chr2_2:9995887-9995906 None:intergenic 45.0%
ATGTGTGTTTGCTTGAGTCG+GGG + chr2_2:9995887-9995906 Msa0236920:three_prime_UTR 45.0%
TTTGCTTGAGTCGGGGTTTA+AGG + chr2_2:9995894-9995913 Msa0236920:three_prime_UTR 45.0%
TTGCTTGAGTCGGGGTTTAA+GGG + chr2_2:9995895-9995914 Msa0236920:three_prime_UTR 45.0%
!! GGTTTAAGGGTTTGTTGGAC+TGG + chr2_2:9995908-9995927 Msa0236920:three_prime_UTR 45.0%
TTGTGGCTCAATCTGGTGAA+AGG + chr2_2:9995937-9995956 Msa0236920:three_prime_UTR 45.0%
TGGTGAAAGGTAGTGTTTGG+TGG + chr2_2:9995950-9995969 Msa0236920:three_prime_UTR 45.0%
CATAGATTCCTCGTATGGTG+AGG - chr2_2:9996034-9996053 None:intergenic 45.0%
CTGTTCGACGGTTTCCATTG+AGG - chr2_2:9991221-9991240 None:intergenic 50.0%
CTCAATGGAAACCGTCGAAC+AGG + chr2_2:9991219-9991238 Msa0236920:exon 50.0%
TGGAAGGAGAACCTGTTCGA+CGG - chr2_2:9991233-9991252 None:intergenic 50.0%
ATAACAGAATCACCGAGCGG+AGG - chr2_2:9991304-9991323 None:intergenic 50.0%
TGATCAGCGTGATGAAGGTC+AGG + chr2_2:9991459-9991478 Msa0236920:CDS 50.0%
GAGTCTGGTCAAACGGAACA+AGG + chr2_2:9991871-9991890 Msa0236920:CDS 50.0%
CTGGTCAAACGGAACAAGGA+AGG + chr2_2:9991875-9991894 Msa0236920:CDS 50.0%
CAACCTACAGTTCCCAAGAG+AGG - chr2_2:9993075-9993094 None:intergenic 50.0%
! GTGATGGGAAGAGGGTTAAG+CGG + chr2_2:9993101-9993120 Msa0236920:CDS 50.0%
TTCTCCCTTGAATGGTCCTC+TGG - chr2_2:9993267-9993286 None:intergenic 50.0%
GCCGAATGTTCTCCCTTGAA+TGG - chr2_2:9993275-9993294 None:intergenic 50.0%
! GTCTTCCCCTTGTTTACCCA+TGG + chr2_2:9993799-9993818 Msa0236920:intron 50.0%
! CCCTTGTTTACCCATGGACA+AGG + chr2_2:9993805-9993824 Msa0236920:intron 50.0%
CCCTTGTCCATGGGTAAACA+AGG - chr2_2:9993809-9993828 None:intergenic 50.0%
!! GGTGCCAATGCTGATTTAGG+TGG + chr2_2:9994504-9994523 Msa0236920:intron 50.0%
AGACTGGAGAAATGGCATGC+GGG + chr2_2:9994546-9994565 Msa0236920:CDS 50.0%
CACGCTTGGTCACAAGAAAC+TGG - chr2_2:9994936-9994955 None:intergenic 50.0%
CCGGACTTCAAGATCCAGAT+CGG - chr2_2:9995228-9995247 None:intergenic 50.0%
CCGATCTGGATCTTGAAGTC+CGG + chr2_2:9995225-9995244 Msa0236920:intron 50.0%
!! GGATGGGGAGCATTTGTCAA+AGG + chr2_2:9995488-9995507 Msa0236920:intron 50.0%
GGGCAGAGGAACTCTAAACA+AGG + chr2_2:9995519-9995538 Msa0236920:CDS 50.0%
!!! AGGAGGTGGTTTTGATGGCT+CGG - chr2_2:9995712-9995731 None:intergenic 50.0%
!!! TCAGGCATTTTTGGTCCAGG+AGG - chr2_2:9995729-9995748 None:intergenic 50.0%
!!! CCATCAGGCATTTTTGGTCC+AGG - chr2_2:9995732-9995751 None:intergenic 50.0%
CCTGGACCAAAAATGCCTGA+TGG + chr2_2:9995729-9995748 Msa0236920:CDS 50.0%
!! GGAACACGGGGTTTTGCTAT+CGG + chr2_2:9995750-9995769 Msa0236920:CDS 50.0%
GTCGGGGTTTAAGGGTTTGT+TGG + chr2_2:9995903-9995922 Msa0236920:three_prime_UTR 50.0%
! TTGGTAGTCCTCACCATACG+AGG + chr2_2:9996023-9996042 Msa0236920:three_prime_UTR 50.0%
AACTAACCGCCATCCGACTG+AGG - chr2_2:9994579-9994598 None:intergenic 55.0%
GCTCCCCATCCTGTAATGAC+AGG - chr2_2:9995479-9995498 None:intergenic 55.0%
CAAAGGATAAAGGCGGGCAG+AGG + chr2_2:9995505-9995524 Msa0236920:CDS 55.0%
GGTTGCATTGTTCCAGGCCA+TGG + chr2_2:9995663-9995682 Msa0236920:intron 55.0%
TGCATTGTTCCAGGCCATGG+AGG + chr2_2:9995666-9995685 Msa0236920:intron 55.0%
GATGATGTACCTCCATGGCC+TGG - chr2_2:9995678-9995697 None:intergenic 55.0%
GAGCCATCAAAACCACCTCC+TGG + chr2_2:9995711-9995730 Msa0236920:CDS 55.0%
!!! GGTCCAGGAGGTGGTTTTGA+TGG - chr2_2:9995717-9995736 None:intergenic 55.0%
!!! GGCATTTTTGGTCCAGGAGG+TGG - chr2_2:9995726-9995745 None:intergenic 55.0%
GCAAAACCCCGTGTTCCATC+AGG - chr2_2:9995747-9995766 None:intergenic 55.0%
ACAGAATCACCGAGCGGAGG+AGG - chr2_2:9991301-9991320 None:intergenic 60.0%
!! CGGGGTTTTGCTATCGGACG+AGG + chr2_2:9995756-9995775 Msa0236920:CDS 60.0%
CAGAGGCTGCAGCAGAACGC+AGG - chr2_2:9993452-9993471 None:intergenic 65.0%
ATCACCGAGCGGAGGAGGCG+AGG - chr2_2:9991296-9991315 None:intergenic 70.0%
! GAGCGGTGGCGGTGGCTGGA+AGG - chr2_2:9991249-9991268 None:intergenic 75.0%
! GTTGGAGCGGTGGCGGTGGC+TGG - chr2_2:9991253-9991272 None:intergenic 75.0%
ACCGCCACCGCTCCAACCGC+CGG + chr2_2:9991256-9991275 Msa0236920:CDS 75.0%
ATCGCCGCCGGCGGTTGGAG+CGG - chr2_2:9991266-9991285 None:intergenic 75.0%
GTGGAATCGCCGCCGGCGGT+TGG - chr2_2:9991271-9991290 None:intergenic 75.0%
CGAGGCGGTGGAATCGCCGC+CGG - chr2_2:9991278-9991297 None:intergenic 75.0%
ACCGCCTCGCCTCCTCCGCT+CGG + chr2_2:9991289-9991308 Msa0236920:CDS 75.0%
ACCGAGCGGAGGAGGCGAGG+CGG - chr2_2:9991293-9991312 None:intergenic 75.0%
!! GGCGGTTGGAGCGGTGGCGG+TGG - chr2_2:9991257-9991276 None:intergenic 80.0%
! GCCGGCGGTTGGAGCGGTGG+CGG - chr2_2:9991260-9991279 None:intergenic 80.0%
! GCCACCGCTCCAACCGCCGG+CGG + chr2_2:9991259-9991278 Msa0236920:CDS 80.0%
! GGCGGTGGAATCGCCGCCGG+CGG - chr2_2:9991275-9991294 None:intergenic 80.0%
! GAGCGGAGGAGGCGAGGCGG+TGG - chr2_2:9991290-9991309 None:intergenic 80.0%
! GCCGCCGGCGGTTGGAGCGG+TGG - chr2_2:9991263-9991282 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 9991113 9996284 9991113 ID=Msa0236920;Name=Msa0236920
chr2_2 mRNA 9991113 9996284 9991113 ID=Msa0236920-mRNA-1;Parent=Msa0236920;Name=Msa0236920-mRNA-1;_AED=0.07;_eAED=0.07;_QI=110|1|1|1|1|1|11|478|404
chr2_2 exon 9991113 9991546 9991113 ID=Msa0236920-mRNA-1:exon:4294;Parent=Msa0236920-mRNA-1
chr2_2 exon 9991821 9991902 9991821 ID=Msa0236920-mRNA-1:exon:4295;Parent=Msa0236920-mRNA-1
chr2_2 exon 9992902 9992996 9992902 ID=Msa0236920-mRNA-1:exon:4296;Parent=Msa0236920-mRNA-1
chr2_2 exon 9993091 9993162 9993091 ID=Msa0236920-mRNA-1:exon:4297;Parent=Msa0236920-mRNA-1
chr2_2 exon 9993237 9993316 9993237 ID=Msa0236920-mRNA-1:exon:4298;Parent=Msa0236920-mRNA-1
chr2_2 exon 9993425 9993509 9993425 ID=Msa0236920-mRNA-1:exon:4299;Parent=Msa0236920-mRNA-1
chr2_2 exon 9994387 9994434 9994387 ID=Msa0236920-mRNA-1:exon:4300;Parent=Msa0236920-mRNA-1
chr2_2 exon 9994523 9994591 9994523 ID=Msa0236920-mRNA-1:exon:4301;Parent=Msa0236920-mRNA-1
chr2_2 exon 9994671 9994808 9994671 ID=Msa0236920-mRNA-1:exon:4302;Parent=Msa0236920-mRNA-1
chr2_2 exon 9995489 9995582 9995489 ID=Msa0236920-mRNA-1:exon:4303;Parent=Msa0236920-mRNA-1
chr2_2 exon 9995679 9996284 9995679 ID=Msa0236920-mRNA-1:exon:4304;Parent=Msa0236920-mRNA-1
chr2_2 five_prime_UTR 9991113 9991222 9991113 ID=Msa0236920-mRNA-1:five_prime_utr;Parent=Msa0236920-mRNA-1
chr2_2 CDS 9991223 9991546 9991223 ID=Msa0236920-mRNA-1:cds;Parent=Msa0236920-mRNA-1
chr2_2 CDS 9991821 9991902 9991821 ID=Msa0236920-mRNA-1:cds;Parent=Msa0236920-mRNA-1
chr2_2 CDS 9992902 9992996 9992902 ID=Msa0236920-mRNA-1:cds;Parent=Msa0236920-mRNA-1
chr2_2 CDS 9993091 9993162 9993091 ID=Msa0236920-mRNA-1:cds;Parent=Msa0236920-mRNA-1
chr2_2 CDS 9993237 9993316 9993237 ID=Msa0236920-mRNA-1:cds;Parent=Msa0236920-mRNA-1
chr2_2 CDS 9993425 9993509 9993425 ID=Msa0236920-mRNA-1:cds;Parent=Msa0236920-mRNA-1
chr2_2 CDS 9994387 9994434 9994387 ID=Msa0236920-mRNA-1:cds;Parent=Msa0236920-mRNA-1
chr2_2 CDS 9994523 9994591 9994523 ID=Msa0236920-mRNA-1:cds;Parent=Msa0236920-mRNA-1
chr2_2 CDS 9994671 9994808 9994671 ID=Msa0236920-mRNA-1:cds;Parent=Msa0236920-mRNA-1
chr2_2 CDS 9995489 9995582 9995489 ID=Msa0236920-mRNA-1:cds;Parent=Msa0236920-mRNA-1
chr2_2 CDS 9995679 9995806 9995679 ID=Msa0236920-mRNA-1:cds;Parent=Msa0236920-mRNA-1
chr2_2 three_prime_UTR 9995807 9996284 9995807 ID=Msa0236920-mRNA-1:three_prime_utr;Parent=Msa0236920-mRNA-1
Gene Sequence

>Msa0236920

ATGGAAACCGTCGAACAGGTTCTCCTTCCAGCCACCGCCACCGCTCCAACCGCCGGCGGCGATTCCACCGCCTCGCCTCCTCCGCTCGGTGATTCTGTTATCATGACTCCCGATCCAGTTATTGACGTTGTTGATGTTGCTGAGCCTGAAATTCATGCTCTGATTTCTGATGAAGAGCATGATCATGAACGTGAAATTGAAATTGATCATGATTTCGATCATGAGAACGAGCTTGATGATCAGCGTGATGAAGGTCAGGAACGTGATCATGTGCCTGAAACCGTTGTTTCATTGGATGATCTCAAGCTCAAGATAATTAAGCAGGTGGAGTATTATTTCAGTGATGAAAATCTGCCCACTGATAAGTATATGCTGAGTCTGGTCAAACGGAACAAGGAAGGGTTTGTTCCTATACCAGCAATTGCATCTTTTAGGAAAATGAAGAAGCTCACTAGAGACCATTTATTTATTGCTGCTGCACTGATGGAATCTTCACTGCTTGTTGTTAGTGGTGATGGGAAGAGGGTTAAGCGGCTCAATCCACTTCGTTTCAATGAAGTTAAAGATCATAAGTTATGTACTGTTTTGGCAGAGAATTTGCCAGAGGACCATTCAAGGGAGAACATTCGGCAAATATTCCAAATAGCTGGAAATATAAAAAAGATAACCATAAATGACCTGCGTTCTGCTGCAGCCTCTGCTAAACATATCAAGCAAGACAAGTTTATTGGTAGTAAGTTGCATGCTCTTGTGGAATATGAGACTATTGAGGCTGCTGAGAAAGCTGTGGCAATGTTAAATAATGAACAAGACTGGAGAAATGGCATGCGGGTTAAATTCCTCAGTCGGATGGCGGGGAAGTATGCACAAAAAAAACAACCTTCGAAGGGATCTAATTCTGAGAAAAATAGCTCTGGCCATGTATCTGAGAAAACTGGAGATGAGGAGAATCATGGCTCACATGAGTATCGTGAAGATATGCCTGTGGTAGAGGATGGGGAGCATTTGTCAAAGGATAAAGGCGGGCAGAGGAACTCTAAACAAGGAAGATCAAGAAAGCAAAAATACCGTGCTACAAATGGAATGGGCCATGGAGGTACATCATCTATTCGAACTACCGAGCCATCAAAACCACCTCCTGGACCAAAAATGCCTGATGGAACACGGGGTTTTGCTATCGGACGAGGTCGCCCTCTTGTTCCTGCATCGAATTAG
Protein sequence

>Msa0236920

METVEQVLLPATATAPTAGGDSTASPPPLGDSVIMTPDPVIDVVDVAEPEIHALISDEEHDHEREIEIDHDFDHENELDDQRDEGQERDHVPETVVSLDDLKLKIIKQVEYYFSDENLPTDKYMLSLVKRNKEGFVPIPAIASFRKMKKLTRDHLFIAAALMESSLLVVSGDGKRVKRLNPLRFNEVKDHKLCTVLAENLPEDHSRENIRQIFQIAGNIKKITINDLRSAAASAKHIKQDKFIGSKLHALVEYETIEAAEKAVAMLNNEQDWRNGMRVKFLSRMAGKYAQKKQPSKGSNSEKNSSGHVSEKTGDEENHGSHEYREDMPVVEDGEHLSKDKGGQRNSKQGRSRKQKYRATNGMGHGGTSSIRTTEPSKPPPGPKMPDGTRGFAIGRGRPLVPASN*