AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0842750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842750 MtrunA17_Chr5g0413331 99.764 423 1 0 1 423 1 423 0.0 866
Msa0842750 MtrunA17_Chr2g0309471 91.726 423 35 0 1 423 1 423 0.0 801
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0842750 AT1G10670.4 88.180 423 50 0 1 423 1 423 0.0 781
Msa0842750 AT1G10670.2 88.180 423 50 0 1 423 1 423 0.0 781
Msa0842750 AT1G10670.1 88.180 423 50 0 1 423 1 423 0.0 781
Msa0842750 AT1G60810.2 87.234 423 54 0 1 423 1 423 0.0 776
Msa0842750 AT1G60810.1 87.234 423 54 0 1 423 1 423 0.0 776
Msa0842750 AT1G10670.3 84.199 443 50 1 1 423 1 443 0.0 767
Msa0842750 AT1G09430.1 81.862 419 76 0 1 419 1 419 0.0 736

Find 132 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATCTTTGTTACAGGTTTA+TGG 0.135148 5_4:-20123941 Msa0842750:intron
GAGCACTTTAAGAGACTTTC+TGG 0.142923 5_4:-20128232 Msa0842750:CDS
GTGAAACCTGACATGTTATT+TGG 0.166150 5_4:-20127321 Msa0842750:CDS
ATGGCTTTCTTCTTCTAAAT+TGG 0.172223 5_4:-20127346 Msa0842750:CDS
TCCGCTTAACTATCCATTTC+AGG 0.197987 5_4:-20123863 Msa0842750:exon
TTTCCATCAACCAATGTAAA+AGG 0.245174 5_4:+20126373 None:intergenic
TTAATTTCCTTTCCCGTTCC+TGG 0.255198 5_4:-20123780 Msa0842750:three_prime_UTR
GCCACTGAGTCTTTCATTCA+TGG 0.261851 5_4:-20126135 Msa0842750:CDS
TGGTTTGGTTGCCTTGAATT+TGG 0.268556 5_4:-20127283 Msa0842750:CDS
TGAACCCAAAGGGCCGAATT+TGG 0.281078 5_4:-20125257 Msa0842750:CDS
TTTCAACCTTTACTTGTGTT+AGG 0.282819 5_4:+20128805 None:intergenic
CGAATTTGGACAATGGTTGC+TGG 0.300252 5_4:-20125243 Msa0842750:CDS
GAATCGATATTGAAGAGAAT+TGG 0.314663 5_4:-20126937 Msa0842750:CDS
ATTGAAAATATAGGTTGAAA+TGG 0.324243 5_4:-20127083 Msa0842750:intron
TTCAATTAGCTAACCTCAAT+CGG 0.325607 5_4:+20124052 None:intergenic
GATCCAGGAATCAAAGTTAA+AGG 0.325987 5_4:-20124167 Msa0842750:intron
CGAGCACTTGGAGAGGAAAT+TGG 0.328982 5_4:-20124079 Msa0842750:CDS
GGTTGCCTTGAATTTGGATT+TGG 0.332415 5_4:-20127277 Msa0842750:CDS
TTGTCCAAATTCGGCCCTTT+GGG 0.337602 5_4:+20125253 None:intergenic
TTAATACAGGTAGGCGATCT+TGG 0.342068 5_4:-20125101 Msa0842750:intron
ATTGTCCAAATTCGGCCCTT+TGG 0.347305 5_4:+20125252 None:intergenic
AAGAAAGCATTGACCTGAAA+TGG 0.353280 5_4:+20123850 None:intergenic
GATGATGGCTAAGAACAATT+TGG 0.355324 5_4:+20128723 None:intergenic
ATACCAGTCATTGTTGCTTC+AGG 0.359407 5_4:+20123917 None:intergenic
CTGCAAAACCTCCTCTTCAT+TGG 0.362473 5_4:+20125034 None:intergenic
TGATGGAAAGCCTTATCCTT+TGG 0.370162 5_4:-20126359 Msa0842750:CDS
AAAGTTGAAAATATGGTAAT+AGG 0.371585 5_4:-20128785 Msa0842750:five_prime_UTR
CAGCAACCATTGTCCAAATT+CGG 0.373694 5_4:+20125244 None:intergenic
CTTACTTGTGCAGACTTGAT+AGG 0.377362 5_4:+20128199 None:intergenic
AAGGTTGAAAGTTGAAAATA+TGG 0.384202 5_4:-20128792 Msa0842750:five_prime_UTR
ACTTGTTGCAACCCTTCCCT+TGG 0.384681 5_4:-20126743 Msa0842750:CDS
CTTGGCTTTGCAAATGAGCT+TGG 0.386907 5_4:-20125083 Msa0842750:CDS
TTGAAAATATAGGTTGAAAT+GGG 0.391559 5_4:-20127082 Msa0842750:intron
AATCGATATTGAAGAGAATT+GGG 0.403789 5_4:-20126936 Msa0842750:CDS
CTTTCACAAATGAAGCAACT+TGG 0.406529 5_4:+20127253 None:intergenic
AAATAAAATGATGAGGTTGT+TGG 0.407457 5_4:+20128691 None:intergenic
TAACTAAATTTACAAATTCC+AGG 0.417390 5_4:+20123762 None:intergenic
AGGTAATACTCTTCATTATG+TGG 0.426783 5_4:+20127013 None:intergenic
ATTGAATTTCCATTGCCATT+TGG 0.427635 5_4:-20126171 Msa0842750:CDS
TCAACAATGAAAGTTGTTAT+CGG 0.431360 5_4:+20127046 None:intergenic
TTCAACCTTTACTTGTGTTA+GGG 0.440620 5_4:+20128806 None:intergenic
TGAAACCTGACATGTTATTT+GGG 0.440993 5_4:-20127320 Msa0842750:CDS
AATTTACAAATTCCAGGAAC+GGG 0.450031 5_4:+20123768 None:intergenic
CGCTTCCCAAATAACATGTC+AGG 0.451633 5_4:+20127315 None:intergenic
AATAAAATGATGAGGTTGTT+GGG 0.452215 5_4:+20128692 None:intergenic
ATAGATCAAGGGAGAAATTG+AGG 0.459317 5_4:-20126599 Msa0842750:intron
CATTCATGGATTAGATGAAA+AGG 0.460623 5_4:-20126121 Msa0842750:intron
TGTTGCAACCCTTCCCTTGG+AGG 0.460679 5_4:-20126740 Msa0842750:intron
TGGCATAATTCGGGCACTAA+AGG 0.461705 5_4:-20124278 Msa0842750:CDS
TGCAAAACCTCCTCTTCATT+GGG 0.463887 5_4:+20125035 None:intergenic
GAATTTGGACAATGGTTGCT+GGG 0.465292 5_4:-20125242 Msa0842750:CDS
TTTGGGAAGCGTGGTAAAAG+TGG 0.468444 5_4:-20127303 Msa0842750:CDS
AACCTCATCCATCCTCCTTC+CGG 0.471441 5_4:-20128547 Msa0842750:intron
GTGGATATGGAGAGAAGAAA+AGG 0.481837 5_4:+20123583 None:intergenic
TAAATTGAATTTACCTCCAA+GGG 0.486977 5_4:+20126727 None:intergenic
AATGACTGGTATATGCAAAC+AGG 0.488870 5_4:-20123906 Msa0842750:CDS
GGGAATTACCGGAAGGAGGA+TGG 0.489398 5_4:+20128539 None:intergenic
AATTTCCATTGCCATTTGGA+AGG 0.489649 5_4:-20126167 Msa0842750:CDS
CCTCTCATATCCAAAGGATA+AGG 0.491900 5_4:+20126349 None:intergenic
TGATTCTAAGAGATTGTTGA+AGG 0.494704 5_4:-20128254 Msa0842750:CDS
TGTTGGGTTGGTGAAGATGA+TGG 0.496535 5_4:+20128708 None:intergenic
ACTTACATCAATTACAACTC+TGG 0.505750 5_4:+20125007 None:intergenic
TTGGGCCAAATCCAAATTCA+AGG 0.506250 5_4:+20127272 None:intergenic
TTCACTGTGTTGAACCCAAA+GGG 0.510313 5_4:-20125267 Msa0842750:CDS
GGAAATTGGCATCCCGATTG+AGG 0.511227 5_4:-20124065 Msa0842750:intron
AATAGCCCTAACACAAGTAA+AGG 0.513847 5_4:-20128811 Msa0842750:five_prime_UTR
GTCTGTCAGAGACAATGTTA+AGG 0.515654 5_4:+20126993 None:intergenic
GGAAACTATGCAGAATATAG+TGG 0.517156 5_4:-20125062 Msa0842750:CDS
GAAGCGTGGTAAAAGTGGTT+TGG 0.519204 5_4:-20127298 Msa0842750:CDS
TCAATTAGCTAACCTCAATC+GGG 0.519937 5_4:+20124053 None:intergenic
TCTTCATTATGTGGGATGAA+AGG 0.519980 5_4:+20127022 None:intergenic
TTAAATTGAATTTACCTCCA+AGG 0.523717 5_4:+20126726 None:intergenic
TATTGAAGAGAATTGGGATA+AGG 0.523886 5_4:-20126930 Msa0842750:intron
TTGAATTTACCTCCAAGGGA+AGG 0.525190 5_4:+20126731 None:intergenic
AGGGAAGGGTTGCAACAAGT+GGG 0.528893 5_4:+20126746 None:intergenic
GGTTGAAATGGGTGGATGCA+AGG 0.529860 5_4:-20127071 Msa0842750:CDS
TTTCACAAATGAAGCAACTT+GGG 0.530236 5_4:+20127254 None:intergenic
GGTAATACTCTTCATTATGT+GGG 0.530693 5_4:+20127014 None:intergenic
AACATTGTCTCTGACAGACT+TGG 0.532898 5_4:-20126989 Msa0842750:CDS
GAAAGAGCGTCTTGGTAAAG+AGG 0.535308 5_4:-20127235 Msa0842750:intron
TGCACCTTTATGTGAGGCGA+GGG 0.535874 5_4:-20124135 Msa0842750:CDS
TGAATTTACCTCCAAGGGAA+GGG 0.537577 5_4:+20126732 None:intergenic
GGACCTGAAGCAACAATGAC+TGG 0.541528 5_4:-20123920 Msa0842750:CDS
AAGGGAAGGGTTGCAACAAG+TGG 0.542096 5_4:+20126745 None:intergenic
AGGGCTCTTGTTATAGGTGG+AGG 0.545602 5_4:-20124337 Msa0842750:CDS
TTGAAAATATGGTAATAGGT+AGG 0.549340 5_4:-20128781 Msa0842750:five_prime_UTR
AAAACAAAACAATGTACATG+TGG 0.549930 5_4:+20128754 None:intergenic
AAACAAAACAATGTACATGT+GGG 0.549946 5_4:+20128755 None:intergenic
ACAAATTCCAGGAACGGGAA+AGG 0.550902 5_4:+20123773 None:intergenic
AAATGATGAGGTTGTTGGGT+TGG 0.553057 5_4:+20128696 None:intergenic
GCACTCATAACCCTTCCAAA+TGG 0.556781 5_4:+20126156 None:intergenic
TACCGGAAGGAGGATGGATG+AGG 0.557016 5_4:+20128545 None:intergenic
ATTTCCATTGCCATTTGGAA+GGG 0.562037 5_4:-20126166 Msa0842750:CDS
GTTGAAATGGGTGGATGCAA+GGG 0.564098 5_4:-20127070 Msa0842750:CDS
TAGTGTCATCTACGCTGATA+CGG 0.565668 5_4:-20125211 Msa0842750:intron
AAATTTACAAATTCCAGGAA+CGG 0.566479 5_4:+20123767 None:intergenic
TCATTTGTGAAAGAGCGTCT+TGG 0.569120 5_4:-20127243 Msa0842750:CDS
AGAAATTGAGGAATTTCTCA+AGG 0.569980 5_4:-20126587 Msa0842750:CDS
GATGAGGTTGGTGCGATGAG+TGG 0.571889 5_4:+20128561 None:intergenic
GTTTGGAGAGAAAGAAAACA+AGG 0.583851 5_4:+20128667 None:intergenic
ATAACCCTTCCAAATGGCAA+TGG 0.584751 5_4:+20126162 None:intergenic
AAAAGGGCTCTTGTTATAGG+TGG 0.587346 5_4:-20124340 Msa0842750:CDS
AAAATATAGGTTGAAATGGG+TGG 0.588383 5_4:-20127079 Msa0842750:intron
CCTTATCCTTTGGATATGAG+AGG 0.593802 5_4:-20126349 Msa0842750:CDS
ACCTGAAATGGATAGTTAAG+CGG 0.596270 5_4:+20123862 None:intergenic
TGTGCAACTGCCGACCCCGA+TGG 0.600634 5_4:-20124367 Msa0842750:CDS
AGCTCGCCTCTCATATCCAA+AGG 0.606308 5_4:+20126343 None:intergenic
ATCTGGGAATTACCGGAAGG+AGG 0.607069 5_4:+20128535 None:intergenic
GGGAAGGGTTGCAACAAGTG+GGG 0.607919 5_4:+20126747 None:intergenic
CTTTAAGAGACTTTCTGGCA+AGG 0.607933 5_4:-20128227 Msa0842750:CDS
AATTCGGGCACTAAAGGAGA+AGG 0.611871 5_4:-20124272 Msa0842750:intron
CACCTTTATGTGAGGCGAGG+GGG 0.612540 5_4:-20124133 Msa0842750:CDS
AATTTGGACAATGGTTGCTG+GGG 0.612808 5_4:-20125241 Msa0842750:CDS
TTTCACTGAGCTGCAAGACA+AGG 0.614695 5_4:-20127373 Msa0842750:CDS
TAGTGGTGCACCCAATGAAG+AGG 0.615153 5_4:-20125045 Msa0842750:CDS
ATGCACCTTTATGTGAGGCG+AGG 0.615319 5_4:-20124136 Msa0842750:CDS
AGCTGCAAGACAAGGAACAA+TGG 0.615951 5_4:-20127365 Msa0842750:CDS
AAAGGGCCGAATTTGGACAA+TGG 0.617352 5_4:-20125250 Msa0842750:CDS
ACAAGGAAAATAAAATGATG+AGG 0.617373 5_4:+20128684 None:intergenic
GATGTAAGAGACACTCCCGT+TGG 0.624325 5_4:+20126781 None:intergenic
ATTTGGACAATGGTTGCTGG+GGG 0.626405 5_4:-20125240 Msa0842750:CDS
AGGTTGGTGCGATGAGTGGT+TGG 0.629722 5_4:+20128565 None:intergenic
GACATGTTATTTGGGAAGCG+TGG 0.630841 5_4:-20127312 Msa0842750:CDS
GGAAGGAGGATGGATGAGGT+TGG 0.631840 5_4:+20128549 None:intergenic
AAGTTTGAAGTGAACGCTGA+TGG 0.639065 5_4:-20123810 Msa0842750:three_prime_UTR
TGGTGCACCCAATGAAGAGG+AGG 0.642713 5_4:-20125042 Msa0842750:CDS
AACAAAACAATGTACATGTG+GGG 0.644913 5_4:+20128756 None:intergenic
CAAGAATGCACCTTTATGTG+AGG 0.651491 5_4:-20124141 Msa0842750:CDS
ATTCACTGTGTTGAACCCAA+AGG 0.654553 5_4:-20125268 Msa0842750:CDS
GCACCTTTATGTGAGGCGAG+GGG 0.663860 5_4:-20124134 Msa0842750:CDS
TTGCAGCTCAGTGAAATCAG+TGG 0.670844 5_4:+20127380 None:intergenic
TCCATGAATGAAAGACTCAG+TGG 0.707219 5_4:+20126134 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAATCTTTAAATTGAT+AGG + chr5_4:20127459-20127478 None:intergenic 10.0%
!! TCAATTTAAAGATTTAATTA+TGG - chr5_4:20127460-20127479 Msa0842750:intron 10.0%
!!! CTTTGAATTTTTTTATTGTT+TGG + chr5_4:20123763-20123782 None:intergenic 15.0%
!!! AATTTTAGATTAAGAAGAAA+TGG - chr5_4:20124111-20124130 Msa0842750:CDS 15.0%
!!! TTTTGTGATAAATTTTTAAG+TGG - chr5_4:20124334-20124353 Msa0842750:CDS 15.0%
!!! TTTATTTTGAACTTATCTTA+TGG + chr5_4:20124870-20124889 None:intergenic 15.0%
!! TTGAATAAAATTGTACATTT+AGG + chr5_4:20126334-20126353 None:intergenic 15.0%
!!! TCTATTTCTTAAATTATTAC+TGG - chr5_4:20126996-20127015 Msa0842750:CDS 15.0%
!! TGCTAAATATTAATTAATAC+AGG - chr5_4:20127296-20127315 Msa0842750:CDS 15.0%
!! AAATATTAATTAATACAGGT+AGG - chr5_4:20127300-20127319 Msa0842750:CDS 15.0%
!! AAAGTTGAAAATATGGTAAT+AGG - chr5_4:20123625-20123644 Msa0842750:three_prime_UTR 20.0%
!! ATTGAAAAATGAAAGAAAGT+GGG + chr5_4:20123901-20123920 None:intergenic 20.0%
!! AATTGAAAAATGAAAGAAAG+TGG + chr5_4:20123902-20123921 None:intergenic 20.0%
!! ATCAAAACTAAGATCAAAAT+TGG + chr5_4:20123956-20123975 None:intergenic 20.0%
!! ATAATATGCAATTTCATTCA+GGG + chr5_4:20124021-20124040 None:intergenic 20.0%
!! TATAATATGCAATTTCATTC+AGG + chr5_4:20124022-20124041 None:intergenic 20.0%
!!! TTCACGACAATTATTTTAAA+TGG + chr5_4:20124478-20124497 None:intergenic 20.0%
!!! ATATCACTTTTACTTAAAGT+AGG - chr5_4:20124601-20124620 Msa0842750:intron 20.0%
!! ATAAGCTGAAAAATATCTTA+TGG - chr5_4:20124774-20124793 Msa0842750:intron 20.0%
!! TAAGCTGAAAAATATCTTAT+GGG - chr5_4:20124775-20124794 Msa0842750:intron 20.0%
!! AAATATATCAATGGTTGAAA+GGG + chr5_4:20125294-20125313 None:intergenic 20.0%
!! AAAATATATCAATGGTTGAA+AGG + chr5_4:20125295-20125314 None:intergenic 20.0%
!!! ATTGAAAATATAGGTTGAAA+TGG - chr5_4:20125327-20125346 Msa0842750:intron 20.0%
!!! TTGAAAATATAGGTTGAAAT+GGG - chr5_4:20125328-20125347 Msa0842750:intron 20.0%
!! TTGTTCGTAAAATAACAAAT+TGG + chr5_4:20125713-20125732 None:intergenic 20.0%
!! AATCTTAAAAGAAAACAGTA+CGG + chr5_4:20125953-20125972 None:intergenic 20.0%
!!! AATGTTATGTGTTATTTTGA+AGG - chr5_4:20126140-20126159 Msa0842750:CDS 20.0%
!! AAGGTAAACTAATATAACTT+TGG - chr5_4:20126308-20126327 Msa0842750:intron 20.0%
!! ACAAAAAATATGTACTTAAC+AGG + chr5_4:20126396-20126415 None:intergenic 20.0%
!!! TGTTTTTTTAACTTCTTACT+TGG - chr5_4:20126413-20126432 Msa0842750:intron 20.0%
!!! GTTTTTTTAACTTCTTACTT+GGG - chr5_4:20126414-20126433 Msa0842750:intron 20.0%
!!! TTTTTTTAACTTCTTACTTG+GGG - chr5_4:20126415-20126434 Msa0842750:intron 20.0%
!!! TTTCATTGTCTTCATTTTAT+GGG + chr5_4:20126595-20126614 None:intergenic 20.0%
!!! ATCTTTTGCCAATAATTTAT+TGG - chr5_4:20127717-20127736 Msa0842750:intron 20.0%
!! AAATTGGTCCAATAAATTAT+TGG + chr5_4:20127728-20127747 None:intergenic 20.0%
!! GTGTTATAAGTTAGTTAATT+TGG + chr5_4:20127776-20127795 None:intergenic 20.0%
!!! TTTGTAATTTTGGTTAATTC+AGG - chr5_4:20127849-20127868 Msa0842750:intron 20.0%
!!! TTGTAATTTTGGTTAATTCA+GGG - chr5_4:20127850-20127869 Msa0842750:intron 20.0%
!! TTGTTCAATACTGTAAATAA+AGG + chr5_4:20128391-20128410 None:intergenic 20.0%
!!! AGCAGTTTATTAATTCTTTT+TGG - chr5_4:20128446-20128465 Msa0842750:intron 20.0%
!! TAACTAAATTTACAAATTCC+AGG + chr5_4:20128651-20128670 None:intergenic 20.0%
! AAGGTTGAAAGTTGAAAATA+TGG - chr5_4:20123618-20123637 Msa0842750:three_prime_UTR 25.0%
! TTGAAAATATGGTAATAGGT+AGG - chr5_4:20123629-20123648 Msa0842750:three_prime_UTR 25.0%
! AAACAAAACAATGTACATGT+GGG + chr5_4:20123658-20123677 None:intergenic 25.0%
! AAAACAAAACAATGTACATG+TGG + chr5_4:20123659-20123678 None:intergenic 25.0%
! AATAAAATGATGAGGTTGTT+GGG + chr5_4:20123721-20123740 None:intergenic 25.0%
! AAATAAAATGATGAGGTTGT+TGG + chr5_4:20123722-20123741 None:intergenic 25.0%
! ACAAGGAAAATAAAATGATG+AGG + chr5_4:20123729-20123748 None:intergenic 25.0%
!! CCATTTCAAATTAGCTTAAT+GGG + chr5_4:20123981-20124000 None:intergenic 25.0%
!! CCATTAAGCTAATTTGAAAT+GGG - chr5_4:20123979-20123998 Msa0842750:intron 25.0%
! TTGCATATTATATAGTAGTG+AGG - chr5_4:20124030-20124049 Msa0842750:intron 25.0%
! GTTAATTATGTCCGAATTTA+TGG - chr5_4:20124378-20124397 Msa0842750:intron 25.0%
!!! GCTTATTGATTTCTGAAAAA+TGG + chr5_4:20124922-20124941 None:intergenic 25.0%
!!! CTTGAGTATTGAATTTGTTT+TGG - chr5_4:20124984-20125003 Msa0842750:intron 25.0%
! AATGTAAGACAATGAATGTA+AGG + chr5_4:20125239-20125258 None:intergenic 25.0%
! ACGTGACTAAAATATATCAA+TGG + chr5_4:20125303-20125322 None:intergenic 25.0%
! CACGTGTTTATTGAAAATAT+AGG - chr5_4:20125318-20125337 Msa0842750:intron 25.0%
! TCAACAATGAAAGTTGTTAT+CGG + chr5_4:20125367-20125386 None:intergenic 25.0%
! AATCGATATTGAAGAGAATT+GGG - chr5_4:20125474-20125493 Msa0842750:intron 25.0%
!! TAAGAGAAAATTTTATGTGC+AGG + chr5_4:20125553-20125572 None:intergenic 25.0%
! ATTATCCATAACCTTCAAAT+TGG - chr5_4:20125572-20125591 Msa0842750:intron 25.0%
!!! TAAGACTGTTTTTATTCCAA+CGG - chr5_4:20125613-20125632 Msa0842750:intron 25.0%
! TAAATTGAATTTACCTCCAA+GGG + chr5_4:20125686-20125705 None:intergenic 25.0%
! TTAAATTGAATTTACCTCCA+AGG + chr5_4:20125687-20125706 None:intergenic 25.0%
!! TTTTACGAACAAACTAACTT+TGG - chr5_4:20125721-20125740 Msa0842750:intron 25.0%
! TCTTGTTAGTTCATACTAAT+GGG - chr5_4:20126165-20126184 Msa0842750:CDS 25.0%
!!! TTTTTTAACTTCTTACTTGG+GGG - chr5_4:20126416-20126435 Msa0842750:intron 25.0%
!! GTGTAATTTAAAATGTTGCA+AGG - chr5_4:20126477-20126496 Msa0842750:intron 25.0%
!! GTTTCATTGTCTTCATTTTA+TGG + chr5_4:20126596-20126615 None:intergenic 25.0%
! ACAGAGAATGAAATGATAAT+CGG - chr5_4:20126670-20126689 Msa0842750:intron 25.0%
!!! ATATGAAGTATTGTTGTTTC+AGG + chr5_4:20126897-20126916 None:intergenic 25.0%
! TCATCAATAAGTCATTGATA+CGG + chr5_4:20127031-20127050 None:intergenic 25.0%
!! TGATGTCTCTAAAAAACTAT+AGG - chr5_4:20127510-20127529 Msa0842750:intron 25.0%
!! GTAGGAGTAAACAATAATTT+TGG - chr5_4:20127618-20127637 Msa0842750:intron 25.0%
!! AATAGAGTAAACACTCATTT+TGG + chr5_4:20127908-20127927 None:intergenic 25.0%
!! TACAGTATTGAACAATCAAA+TGG - chr5_4:20128396-20128415 Msa0842750:intron 25.0%
! TAATAGGAAAAATTGTGTTG+AGG - chr5_4:20128423-20128442 Msa0842750:intron 25.0%
!! TTTTTGGATATCTTTGTTAC+AGG - chr5_4:20128462-20128481 Msa0842750:intron 25.0%
! ATATCTTTGTTACAGGTTTA+TGG - chr5_4:20128469-20128488 Msa0842750:intron 25.0%
! AAATTTACAAATTCCAGGAA+CGG + chr5_4:20128646-20128665 None:intergenic 25.0%
!! TCAGTTTTTGTAGAATTTGA+TGG - chr5_4:20128725-20128744 Msa0842750:five_prime_UTR 25.0%
TTCAACCTTTACTTGTGTTA+GGG + chr5_4:20123607-20123626 None:intergenic 30.0%
TTTCAACCTTTACTTGTGTT+AGG + chr5_4:20123608-20123627 None:intergenic 30.0%
AACAAAACAATGTACATGTG+GGG + chr5_4:20123657-20123676 None:intergenic 30.0%
CCCATTAAGCTAATTTGAAA+TGG - chr5_4:20123978-20123997 Msa0842750:intron 30.0%
! CCCATTTCAAATTAGCTTAA+TGG + chr5_4:20123982-20124001 None:intergenic 30.0%
! TGATTCTAAGAGATTGTTGA+AGG - chr5_4:20124156-20124175 Msa0842750:CDS 30.0%
TTATGTCCGAATTTATGGTT+AGG - chr5_4:20124383-20124402 Msa0842750:intron 30.0%
TATGTCCGAATTTATGGTTA+GGG - chr5_4:20124384-20124403 Msa0842750:intron 30.0%
ATCTTCCCTAACCATAAATT+CGG + chr5_4:20124392-20124411 None:intergenic 30.0%
GTAGAAAGAACACAATTGAT+TGG - chr5_4:20124516-20124535 Msa0842750:intron 30.0%
AGCATATTAAGCACAATGTA+TGG + chr5_4:20124829-20124848 None:intergenic 30.0%
CGTGTATGCAAGTTTAATAA+AGG - chr5_4:20124895-20124914 Msa0842750:intron 30.0%
!!! TTGTTTTGGTTTGTGCTTTA+AGG - chr5_4:20124998-20125017 Msa0842750:intron 30.0%
ATGGCTTTCTTCTTCTAAAT+TGG - chr5_4:20125064-20125083 Msa0842750:CDS 30.0%
! TGAAACCTGACATGTTATTT+GGG - chr5_4:20125090-20125109 Msa0842750:CDS 30.0%
TTTCACAAATGAAGCAACTT+GGG + chr5_4:20125159-20125178 None:intergenic 30.0%
ACAATGAATGTAAGGTTTGA+AGG + chr5_4:20125231-20125250 None:intergenic 30.0%
! AAAATATAGGTTGAAATGGG+TGG - chr5_4:20125331-20125350 Msa0842750:intron 30.0%
GGTAATACTCTTCATTATGT+GGG + chr5_4:20125399-20125418 None:intergenic 30.0%
AGGTAATACTCTTCATTATG+TGG + chr5_4:20125400-20125419 None:intergenic 30.0%
GAATCGATATTGAAGAGAAT+TGG - chr5_4:20125473-20125492 Msa0842750:intron 30.0%
TATTGAAGAGAATTGGGATA+AGG - chr5_4:20125480-20125499 Msa0842750:intron 30.0%
! AAGATGAAAAGTATGTGTTG+TGG + chr5_4:20125508-20125527 None:intergenic 30.0%
! TTTTATGTGCAGGAAATAGA+TGG + chr5_4:20125543-20125562 None:intergenic 30.0%
ATATGACCAAACCAATTTGA+AGG + chr5_4:20125586-20125605 None:intergenic 30.0%
!! AATTGGTTTGGTCATATTTC+AGG - chr5_4:20125589-20125608 Msa0842750:intron 30.0%
!!! AAGACTGTTTTTATTCCAAC+GGG - chr5_4:20125614-20125633 Msa0842750:intron 30.0%
!!! TGCACTGTTTTTATAGATCA+AGG - chr5_4:20125799-20125818 Msa0842750:intron 30.0%
!!! GCACTGTTTTTATAGATCAA+GGG - chr5_4:20125800-20125819 Msa0842750:intron 30.0%
AGAAATTGAGGAATTTCTCA+AGG - chr5_4:20125823-20125842 Msa0842750:intron 30.0%
!! GTGATTTTCACTCTTTTTCA+AGG - chr5_4:20125845-20125864 Msa0842750:intron 30.0%
! AGAGATGAATCCTTTTACAT+TGG - chr5_4:20126027-20126046 Msa0842750:intron 30.0%
!! AATCCTTTTACATTGGTTGA+TGG - chr5_4:20126034-20126053 Msa0842750:intron 30.0%
TTTCCATCAACCAATGTAAA+AGG + chr5_4:20126040-20126059 None:intergenic 30.0%
TTTCAAGAACTTCAAGAAGT+AGG - chr5_4:20126105-20126124 Msa0842750:intron 30.0%
! GTCTTGTTAGTTCATACTAA+TGG - chr5_4:20126164-20126183 Msa0842750:CDS 30.0%
ATTGAATTTCCATTGCCATT+TGG - chr5_4:20126239-20126258 Msa0842750:intron 30.0%
!! CATTCATGGATTAGATGAAA+AGG - chr5_4:20126289-20126308 Msa0842750:intron 30.0%
TTCACAAGTTATGAAACTGA+TGG - chr5_4:20126567-20126586 Msa0842750:CDS 30.0%
!! AGTTTGTTAGCAAATGTGTT+AGG + chr5_4:20126737-20126756 None:intergenic 30.0%
TAACATATCCTAGAAGAAAG+TGG + chr5_4:20126869-20126888 None:intergenic 30.0%
!! ACTTTCTTCTAGGATATGTT+AGG - chr5_4:20126868-20126887 Msa0842750:intron 30.0%
TTGAATGCAACTACATGTTT+GGG + chr5_4:20126971-20126990 None:intergenic 30.0%
ATTGAATGCAACTACATGTT+TGG + chr5_4:20126972-20126991 None:intergenic 30.0%
ACTTACATCAATTACAACTC+TGG + chr5_4:20127406-20127425 None:intergenic 30.0%
! TTGTTGTTGTTGTATTCTGT+AGG - chr5_4:20127600-20127619 Msa0842750:intron 30.0%
!!! TCAAGGGTGTTTATGTATTT+TGG + chr5_4:20127693-20127712 None:intergenic 30.0%
TTGGCAAAAGATATACTCAA+GGG + chr5_4:20127709-20127728 None:intergenic 30.0%
ATTGGCAAAAGATATACTCA+AGG + chr5_4:20127710-20127729 None:intergenic 30.0%
TATTGGACCAATTTGACTAA+TGG - chr5_4:20127734-20127753 Msa0842750:intron 30.0%
TTGAATATGTCCATTGTAGT+AGG + chr5_4:20127813-20127832 None:intergenic 30.0%
TACTACAATGGACATATTCA+AGG - chr5_4:20127812-20127831 Msa0842750:intron 30.0%
GATATCACTTGACATATTCA+AGG - chr5_4:20127881-20127900 Msa0842750:intron 30.0%
!! CTACTTTTAGTGGCATAATT+CGG - chr5_4:20128122-20128141 Msa0842750:intron 30.0%
! TACTTTTAGTGGCATAATTC+GGG - chr5_4:20128123-20128142 Msa0842750:intron 30.0%
AAGTAAAACTCTACAGTTGT+GGG + chr5_4:20128168-20128187 None:intergenic 30.0%
TAAGTAAAACTCTACAGTTG+TGG + chr5_4:20128169-20128188 None:intergenic 30.0%
TTCAATTAGCTAACCTCAAT+CGG + chr5_4:20128361-20128380 None:intergenic 30.0%
ACAATCAAATGGTGCTTAAT+AGG - chr5_4:20128407-20128426 Msa0842750:intron 30.0%
AATTTACAAATTCCAGGAAC+GGG + chr5_4:20128645-20128664 None:intergenic 30.0%
! GACTTCATTTTGTAAACACA+CGG + chr5_4:20128676-20128695 None:intergenic 30.0%
! ACATTTTCAACCACTCTTTT+TGG + chr5_4:20128701-20128720 None:intergenic 30.0%
AATAGCCCTAACACAAGTAA+AGG - chr5_4:20123599-20123618 Msa0842750:three_prime_UTR 35.0%
! GATGATGGCTAAGAACAATT+TGG + chr5_4:20123690-20123709 None:intergenic 35.0%
GTTTGGAGAGAAAGAAAACA+AGG + chr5_4:20123746-20123765 None:intergenic 35.0%
!!! ACGATGTTAGTTTTGTGTGA+TGG + chr5_4:20123807-20123826 None:intergenic 35.0%
AATGAAAGAAAGTGGGATCT+GGG + chr5_4:20123894-20123913 None:intergenic 35.0%
AAATGAAAGAAAGTGGGATC+TGG + chr5_4:20123895-20123914 None:intergenic 35.0%
GTTAGTGCAGTTCAAATATG+TGG - chr5_4:20124356-20124375 Msa0842750:CDS 35.0%
!! TGGTTTGTGCTTTAAGGTTA+CGG - chr5_4:20125004-20125023 Msa0842750:intron 35.0%
GTGAAACCTGACATGTTATT+TGG - chr5_4:20125089-20125108 Msa0842750:CDS 35.0%
CTTTCACAAATGAAGCAACT+TGG + chr5_4:20125160-20125179 None:intergenic 35.0%
TGAATGTAAGGTTTGAAGGA+CGG + chr5_4:20125227-20125246 None:intergenic 35.0%
TCTTCATTATGTGGGATGAA+AGG + chr5_4:20125391-20125410 None:intergenic 35.0%
! AGCATAAGCTTTTCAGAATG+TGG - chr5_4:20125448-20125467 Msa0842750:intron 35.0%
! ATAAGCTTTTCAGAATGTGG+AGG - chr5_4:20125451-20125470 Msa0842750:intron 35.0%
CCAAACCAATTTGAAGGTTA+TGG + chr5_4:20125580-20125599 None:intergenic 35.0%
CCATAACCTTCAAATTGGTT+TGG - chr5_4:20125577-20125596 Msa0842750:intron 35.0%
ATAGATCAAGGGAGAAATTG+AGG - chr5_4:20125811-20125830 Msa0842750:intron 35.0%
AATGTATATTAACACGCCAC+TGG - chr5_4:20125883-20125902 Msa0842750:intron 35.0%
ATGTATATTAACACGCCACT+GGG - chr5_4:20125884-20125903 Msa0842750:intron 35.0%
!! CTTTACTTTTCTGTCAGATC+TGG - chr5_4:20125991-20126010 Msa0842750:intron 35.0%
! AATTTCCATTGCCATTTGGA+AGG - chr5_4:20126243-20126262 Msa0842750:intron 35.0%
! ATTTCCATTGCCATTTGGAA+GGG - chr5_4:20126244-20126263 Msa0842750:intron 35.0%
ATTACACCAGATTCCTCTAA+GGG + chr5_4:20126464-20126483 None:intergenic 35.0%
AATTACACCAGATTCCTCTA+AGG + chr5_4:20126465-20126484 None:intergenic 35.0%
AATTCAGAGAGTTCAGTTAC+AGG + chr5_4:20126805-20126824 None:intergenic 35.0%
AACTGAACTCTCTGAATTCT+AGG - chr5_4:20126807-20126826 Msa0842750:intron 35.0%
ACTGAACTCTCTGAATTCTA+GGG - chr5_4:20126808-20126827 Msa0842750:intron 35.0%
CCATATGAGAGAAAATGAGT+TGG + chr5_4:20126844-20126863 None:intergenic 35.0%
! CCAACTCATTTTCTCTCATA+TGG - chr5_4:20126841-20126860 Msa0842750:intron 35.0%
GGAAACTATGCAGAATATAG+TGG - chr5_4:20127348-20127367 Msa0842750:CDS 35.0%
! TAGGTATTCTGAGAACACTA+TGG - chr5_4:20127529-20127548 Msa0842750:intron 35.0%
GTGTCTTCCATTAGTCAAAT+TGG + chr5_4:20127744-20127763 None:intergenic 35.0%
ACTAATGGAAGACACATTCA+AGG - chr5_4:20127749-20127768 Msa0842750:intron 35.0%
TATGTCCATTGTAGTAGGTT+TGG + chr5_4:20127808-20127827 None:intergenic 35.0%
!!! CTATAACAAGAGCCCTTTTT+TGG + chr5_4:20128069-20128088 None:intergenic 35.0%
! CAAAAAAGGGCTCTTGTTAT+AGG - chr5_4:20128067-20128086 Msa0842750:intron 35.0%
! CTTTTGAACTATTGTGATCC+AGG - chr5_4:20128228-20128247 Msa0842750:CDS 35.0%
GATCCAGGAATCAAAGTTAA+AGG - chr5_4:20128243-20128262 Msa0842750:CDS 35.0%
!!! GCATTTTTTCTAGACCCTTT+TGG + chr5_4:20128312-20128331 None:intergenic 35.0%
TCAATTAGCTAACCTCAATC+GGG + chr5_4:20128360-20128379 None:intergenic 35.0%
AATGACTGGTATATGCAAAC+AGG - chr5_4:20128504-20128523 Msa0842750:intron 35.0%
ACCTGAAATGGATAGTTAAG+CGG + chr5_4:20128551-20128570 None:intergenic 35.0%
!! AAGAAAGCATTGACCTGAAA+TGG + chr5_4:20128563-20128582 None:intergenic 35.0%
ATGAAGTCATCCAAAAAGAG+TGG - chr5_4:20128688-20128707 Msa0842750:five_prime_UTR 35.0%
AAATGATGAGGTTGTTGGGT+TGG + chr5_4:20123717-20123736 None:intergenic 40.0%
! GAGCACTTTAAGAGACTTTC+TGG - chr5_4:20124178-20124197 Msa0842750:intron 40.0%
! CTTTAAGAGACTTTCTGGCA+AGG - chr5_4:20124183-20124202 Msa0842750:intron 40.0%
CTTACTTGTGCAGACTTGAT+AGG + chr5_4:20124214-20124233 None:intergenic 40.0%
TATGGCATAAGCACTTGCAA+AGG + chr5_4:20124852-20124871 None:intergenic 40.0%
!! TGGTTTGGTTGCCTTGAATT+TGG - chr5_4:20125127-20125146 Msa0842750:intron 40.0%
GGTTGCCTTGAATTTGGATT+TGG - chr5_4:20125133-20125152 Msa0842750:intron 40.0%
TTGGGCCAAATCCAAATTCA+AGG + chr5_4:20125141-20125160 None:intergenic 40.0%
!! TCATTTGTGAAAGAGCGTCT+TGG - chr5_4:20125167-20125186 Msa0842750:intron 40.0%
GTCTGTCAGAGACAATGTTA+AGG + chr5_4:20125420-20125439 None:intergenic 40.0%
AACATTGTCTCTGACAGACT+TGG - chr5_4:20125421-20125440 Msa0842750:intron 40.0%
TGAATTTACCTCCAAGGGAA+GGG + chr5_4:20125681-20125700 None:intergenic 40.0%
TTGAATTTACCTCCAAGGGA+AGG + chr5_4:20125682-20125701 None:intergenic 40.0%
! TGATGGAAAGCCTTATCCTT+TGG - chr5_4:20126051-20126070 Msa0842750:intron 40.0%
CCTCTCATATCCAAAGGATA+AGG + chr5_4:20126064-20126083 None:intergenic 40.0%
CCTTATCCTTTGGATATGAG+AGG - chr5_4:20126061-20126080 Msa0842750:intron 40.0%
ATGAACAGACGTTGTCGTAT+TGG - chr5_4:20126200-20126219 Msa0842750:intron 40.0%
ATAACCCTTCCAAATGGCAA+TGG + chr5_4:20126251-20126270 None:intergenic 40.0%
TCCATGAATGAAAGACTCAG+TGG + chr5_4:20126279-20126298 None:intergenic 40.0%
TTACACCAGATTCCTCTAAG+GGG + chr5_4:20126463-20126482 None:intergenic 40.0%
GTTACAGGTTCGCTATATGA+AGG + chr5_4:20126790-20126809 None:intergenic 40.0%
ATATGGCTCCACTTTCTTCT+AGG - chr5_4:20126858-20126877 Msa0842750:intron 40.0%
ATTCACTGTGTTGAACCCAA+AGG - chr5_4:20127142-20127161 Msa0842750:intron 40.0%
TTCACTGTGTTGAACCCAAA+GGG - chr5_4:20127143-20127162 Msa0842750:intron 40.0%
CAGCAACCATTGTCCAAATT+CGG + chr5_4:20127169-20127188 None:intergenic 40.0%
GAATTTGGACAATGGTTGCT+GGG - chr5_4:20127168-20127187 Msa0842750:intron 40.0%
AATTTGGACAATGGTTGCTG+GGG - chr5_4:20127169-20127188 Msa0842750:intron 40.0%
TAGTGTCATCTACGCTGATA+CGG - chr5_4:20127199-20127218 Msa0842750:intron 40.0%
GTCACTTCATGCTGCAAATA+TGG + chr5_4:20127268-20127287 None:intergenic 40.0%
TTAATACAGGTAGGCGATCT+TGG - chr5_4:20127309-20127328 Msa0842750:CDS 40.0%
TGCAAAACCTCCTCTTCATT+GGG + chr5_4:20127378-20127397 None:intergenic 40.0%
! TATGGTGCTAACGTGAACAA+CGG - chr5_4:20127478-20127497 Msa0842750:intron 40.0%
! TAGAGTAACGAGCCCTTTTT+CGG + chr5_4:20127987-20128006 None:intergenic 40.0%
! AAAAGGGCTCTTGTTATAGG+TGG - chr5_4:20128070-20128089 Msa0842750:intron 40.0%
!!! GATGTTGCTGCTACTTTTAG+TGG - chr5_4:20128112-20128131 Msa0842750:intron 40.0%
! CTGCCTTTAACTTTGATTCC+TGG + chr5_4:20128249-20128268 None:intergenic 40.0%
CAAGAATGCACCTTTATGTG+AGG - chr5_4:20128269-20128288 Msa0842750:CDS 40.0%
!! TCTAGACCCTTTTGGTAGTT+CGG + chr5_4:20128304-20128323 None:intergenic 40.0%
CTAGAAAAAATGCGAGCACT+TGG - chr5_4:20128319-20128338 Msa0842750:intron 40.0%
! ATACCAGTCATTGTTGCTTC+AGG + chr5_4:20128496-20128515 None:intergenic 40.0%
TCCGCTTAACTATCCATTTC+AGG - chr5_4:20128547-20128566 Msa0842750:intron 40.0%
! AAGTTTGAAGTGAACGCTGA+TGG - chr5_4:20128600-20128619 Msa0842750:five_prime_UTR 40.0%
TTAATTTCCTTTCCCGTTCC+TGG - chr5_4:20128630-20128649 Msa0842750:five_prime_UTR 40.0%
!! TGTTGGGTTGGTGAAGATGA+TGG + chr5_4:20123705-20123724 None:intergenic 45.0%
AAGTGGGATCTGGGAATTAC+CGG + chr5_4:20123885-20123904 None:intergenic 45.0%
ATGCACGCTACAGTGAATCA+AGG + chr5_4:20124958-20124977 None:intergenic 45.0%
TTGCAGCTCAGTGAAATCAG+TGG + chr5_4:20125033-20125052 None:intergenic 45.0%
TTTCACTGAGCTGCAAGACA+AGG - chr5_4:20125037-20125056 Msa0842750:CDS 45.0%
AGCTGCAAGACAAGGAACAA+TGG - chr5_4:20125045-20125064 Msa0842750:CDS 45.0%
CGCTTCCCAAATAACATGTC+AGG + chr5_4:20125098-20125117 None:intergenic 45.0%
! GACATGTTATTTGGGAAGCG+TGG - chr5_4:20125098-20125117 Msa0842750:intron 45.0%
! TTTGGGAAGCGTGGTAAAAG+TGG - chr5_4:20125107-20125126 Msa0842750:intron 45.0%
GAAGCGTGGTAAAAGTGGTT+TGG - chr5_4:20125112-20125131 Msa0842750:intron 45.0%
!! GAAAGAGCGTCTTGGTAAAG+AGG - chr5_4:20125175-20125194 Msa0842750:intron 45.0%
TGTAAGGTTTGAAGGACGGA+CGG + chr5_4:20125223-20125242 None:intergenic 45.0%
GTTGAAATGGGTGGATGCAA+GGG - chr5_4:20125340-20125359 Msa0842750:intron 45.0%
!! TTGTCGTATTGGTTGCAGGT+GGG - chr5_4:20126211-20126230 Msa0842750:intron 45.0%
GCACTCATAACCCTTCCAAA+TGG + chr5_4:20126257-20126276 None:intergenic 45.0%
GCCACTGAGTCTTTCATTCA+TGG - chr5_4:20126275-20126294 Msa0842750:intron 45.0%
! CTGTTTTGCCACCATTGTAG+AGG + chr5_4:20126654-20126673 None:intergenic 45.0%
GTTAGGAGAGAATGTCTCTC+TGG + chr5_4:20126720-20126739 None:intergenic 45.0%
TTGTCCAAATTCGGCCCTTT+GGG + chr5_4:20127160-20127179 None:intergenic 45.0%
ATTGTCCAAATTCGGCCCTT+TGG + chr5_4:20127161-20127180 None:intergenic 45.0%
AAAGGGCCGAATTTGGACAA+TGG - chr5_4:20127160-20127179 Msa0842750:intron 45.0%
CGAATTTGGACAATGGTTGC+TGG - chr5_4:20127167-20127186 Msa0842750:intron 45.0%
ATTTGGACAATGGTTGCTGG+GGG - chr5_4:20127170-20127189 Msa0842750:intron 45.0%
!! CTTGGCTTTGCAAATGAGCT+TGG - chr5_4:20127327-20127346 Msa0842750:CDS 45.0%
CTGCAAAACCTCCTCTTCAT+TGG + chr5_4:20127379-20127398 None:intergenic 45.0%
! ATGGTGCTAACGTGAACAAC+GGG - chr5_4:20127479-20127498 Msa0842750:intron 45.0%
GAGAGCCAAACCTACTACAA+TGG - chr5_4:20127800-20127819 Msa0842750:intron 45.0%
!!! AAGAGCCCTTTTTTGGCCAT+CGG + chr5_4:20128062-20128081 None:intergenic 45.0%
TGGCATAATTCGGGCACTAA+AGG - chr5_4:20128132-20128151 Msa0842750:intron 45.0%
AATTCGGGCACTAAAGGAGA+AGG - chr5_4:20128138-20128157 Msa0842750:intron 45.0%
AAAAATGCGAGCACTTGGAG+AGG - chr5_4:20128324-20128343 Msa0842750:intron 45.0%
ACAAATTCCAGGAACGGGAA+AGG + chr5_4:20128640-20128659 None:intergenic 45.0%
!!! TTTTTTTTTTTTTGTAATTT+TGG - chr5_4:20127839-20127858 Msa0842750:intron 5.0%
AACCTCATCCATCCTCCTTC+CGG - chr5_4:20123863-20123882 Msa0842750:exon 50.0%
ATCTGGGAATTACCGGAAGG+AGG + chr5_4:20123878-20123897 None:intergenic 50.0%
!!! AGGTGTGCTTTTTCCCACTC+TGG - chr5_4:20125195-20125214 Msa0842750:intron 50.0%
GGTTGAAATGGGTGGATGCA+AGG - chr5_4:20125339-20125358 Msa0842750:intron 50.0%
GATGTAAGAGACACTCCCGT+TGG + chr5_4:20125632-20125651 None:intergenic 50.0%
AGGGAAGGGTTGCAACAAGT+GGG + chr5_4:20125667-20125686 None:intergenic 50.0%
AAGGGAAGGGTTGCAACAAG+TGG + chr5_4:20125668-20125687 None:intergenic 50.0%
! ACTTGTTGCAACCCTTCCCT+TGG - chr5_4:20125667-20125686 Msa0842750:intron 50.0%
GATTGCACAAGTACACCCAG+TGG + chr5_4:20125902-20125921 None:intergenic 50.0%
AGCTCGCCTCTCATATCCAA+AGG + chr5_4:20126070-20126089 None:intergenic 50.0%
!! GACGTTGTCGTATTGGTTGC+AGG - chr5_4:20126207-20126226 Msa0842750:intron 50.0%
!! GTTGTCGTATTGGTTGCAGG+TGG - chr5_4:20126210-20126229 Msa0842750:intron 50.0%
!! TGTCGTATTGGTTGCAGGTG+GGG - chr5_4:20126212-20126231 Msa0842750:intron 50.0%
! ACAGGCGCACACACATTTTC+TGG + chr5_4:20126378-20126397 None:intergenic 50.0%
! AGATTCCTCTAAGGGGTAGG+GGG + chr5_4:20126456-20126475 None:intergenic 50.0%
! CAGATTCCTCTAAGGGGTAG+GGG + chr5_4:20126457-20126476 None:intergenic 50.0%
! CCAGATTCCTCTAAGGGGTA+GGG + chr5_4:20126458-20126477 None:intergenic 50.0%
! ACCAGATTCCTCTAAGGGGT+AGG + chr5_4:20126459-20126478 None:intergenic 50.0%
CGAGCGTACAACCTCTACAA+TGG - chr5_4:20126640-20126659 Msa0842750:intron 50.0%
GCGTACAACCTCTACAATGG+TGG - chr5_4:20126643-20126662 Msa0842750:intron 50.0%
! TCTGGTAGGAGCTTAGCTCT+GGG + chr5_4:20126702-20126721 None:intergenic 50.0%
GGAGAGAATGTCTCTCTGGT+AGG + chr5_4:20126716-20126735 None:intergenic 50.0%
GTTCGCTATATGAAGGAGCG+AGG + chr5_4:20126783-20126802 None:intergenic 50.0%
TGTCTGACACCGACACATGT+CGG + chr5_4:20126938-20126957 None:intergenic 50.0%
!! ACATGTGTCGGTGTCAGACA+CGG - chr5_4:20126938-20126957 Msa0842750:CDS 50.0%
TGAACCCAAAGGGCCGAATT+TGG - chr5_4:20127153-20127172 Msa0842750:intron 50.0%
TGTCATCTACGCTGATACGG+TGG - chr5_4:20127202-20127221 Msa0842750:intron 50.0%
GTCATCTACGCTGATACGGT+GGG - chr5_4:20127203-20127222 Msa0842750:intron 50.0%
TAGTGGTGCACCCAATGAAG+AGG - chr5_4:20127365-20127384 Msa0842750:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5_4:20127574-20127593 None:intergenic 50.0%
TGGTCCCTAAATGCGTGAAG+CGG - chr5_4:20127638-20127657 Msa0842750:intron 50.0%
ACACCCGCTTCACGCATTTA+GGG + chr5_4:20127645-20127664 None:intergenic 50.0%
TGACCCTGATGGCCGAAAAA+GGG - chr5_4:20127972-20127991 Msa0842750:intron 50.0%
!!! AGAGCCCTTTTTTGGCCATC+GGG + chr5_4:20128061-20128080 None:intergenic 50.0%
! AGGGCTCTTGTTATAGGTGG+AGG - chr5_4:20128073-20128092 Msa0842750:intron 50.0%
ATGCACCTTTATGTGAGGCG+AGG - chr5_4:20128274-20128293 Msa0842750:CDS 50.0%
TGCACCTTTATGTGAGGCGA+GGG - chr5_4:20128275-20128294 Msa0842750:CDS 50.0%
CGAGCACTTGGAGAGGAAAT+TGG - chr5_4:20128331-20128350 Msa0842750:intron 50.0%
GGAAATTGGCATCCCGATTG+AGG - chr5_4:20128345-20128364 Msa0842750:intron 50.0%
GGACCTGAAGCAACAATGAC+TGG - chr5_4:20128490-20128509 Msa0842750:intron 50.0%
!! AGGTTGGTGCGATGAGTGGT+TGG + chr5_4:20123848-20123867 None:intergenic 55.0%
!! GATGAGGTTGGTGCGATGAG+TGG + chr5_4:20123852-20123871 None:intergenic 55.0%
GGAAGGAGGATGGATGAGGT+TGG + chr5_4:20123864-20123883 None:intergenic 55.0%
TACCGGAAGGAGGATGGATG+AGG + chr5_4:20123868-20123887 None:intergenic 55.0%
GGGAATTACCGGAAGGAGGA+TGG + chr5_4:20123874-20123893 None:intergenic 55.0%
GGGATCTGGGAATTACCGGA+AGG + chr5_4:20123881-20123900 None:intergenic 55.0%
GGGAAGGGTTGCAACAAGTG+GGG + chr5_4:20125666-20125685 None:intergenic 55.0%
TGTTGCAACCCTTCCCTTGG+AGG - chr5_4:20125670-20125689 Msa0842750:intron 55.0%
GAATACCCCCTACCCCTTAG+AGG - chr5_4:20126448-20126467 Msa0842750:intron 55.0%
CCCTACCCCTTAGAGGAATC+TGG - chr5_4:20126455-20126474 Msa0842750:intron 55.0%
!! TAGGAGCTTAGCTCTGGGCA+GGG + chr5_4:20126697-20126716 None:intergenic 55.0%
CTCTGGTAGGAGCTTAGCTC+TGG + chr5_4:20126703-20126722 None:intergenic 55.0%
GCCTAGTGTCCGACATGTGT+CGG - chr5_4:20126926-20126945 Msa0842750:intron 55.0%
ACCGACACATGTCGGACACT+AGG + chr5_4:20126930-20126949 None:intergenic 55.0%
TGGTGCACCCAATGAAGAGG+AGG - chr5_4:20127368-20127387 Msa0842750:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr5_4:20127566-20127585 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_4:20127565-20127584 Msa0842750:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5_4:20127566-20127585 Msa0842750:intron 55.0%
GGTCCCTAAATGCGTGAAGC+GGG - chr5_4:20127639-20127658 Msa0842750:intron 55.0%
GACACCCGCTTCACGCATTT+AGG + chr5_4:20127646-20127665 None:intergenic 55.0%
TCAGGGTCAGCAGTTGCACA+TGG + chr5_4:20127961-20127980 None:intergenic 55.0%
TGTGCAACTGCTGACCCTGA+TGG - chr5_4:20127961-20127980 Msa0842750:intron 55.0%
CTGACCCTGATGGCCGAAAA+AGG - chr5_4:20127971-20127990 Msa0842750:intron 55.0%
!!! GAGCCCTTTTTCGGCCATCA+GGG + chr5_4:20127978-20127997 None:intergenic 55.0%
!!! CCTTTTTTGGCCATCGGGGT+CGG + chr5_4:20128056-20128075 None:intergenic 55.0%
CGACCCCGATGGCCAAAAAA+GGG - chr5_4:20128054-20128073 Msa0842750:intron 55.0%
!!! GAGCCCTTTTTTGGCCATCG+GGG + chr5_4:20128060-20128079 None:intergenic 55.0%
GCACCTTTATGTGAGGCGAG+GGG - chr5_4:20128276-20128295 Msa0842750:CDS 55.0%
CACCTTTATGTGAGGCGAGG+GGG - chr5_4:20128277-20128296 Msa0842750:CDS 55.0%
AGGGGGTCCGAACTACCAAA+AGG - chr5_4:20128294-20128313 Msa0842750:exon 55.0%
GGGGGTCCGAACTACCAAAA+GGG - chr5_4:20128295-20128314 Msa0842750:intron 55.0%
!! AGGAGCTTAGCTCTGGGCAG+GGG + chr5_4:20126696-20126715 None:intergenic 60.0%
!! GTAGGAGCTTAGCTCTGGGC+AGG + chr5_4:20126698-20126717 None:intergenic 60.0%
TGGACAATGGTTGCTGGGGG+AGG - chr5_4:20127173-20127192 Msa0842750:intron 60.0%
!!! CGAGCCCTTTTTCGGCCATC+AGG + chr5_4:20127979-20127998 None:intergenic 60.0%
CCGACCCCGATGGCCAAAAA+AGG - chr5_4:20128053-20128072 Msa0842750:intron 60.0%
GACCCCCTCGCCTCACATAA+AGG + chr5_4:20128282-20128301 None:intergenic 60.0%
AGGACGGACGGAGCCAGAGT+GGG + chr5_4:20125211-20125230 None:intergenic 65.0%
AAGGACGGACGGAGCCAGAG+TGG + chr5_4:20125212-20125231 None:intergenic 65.0%
TGTGCAACTGCCGACCCCGA+TGG - chr5_4:20128043-20128062 Msa0842750:intron 65.0%
CGGGGTCGGCAGTTGCACAC+TGG + chr5_4:20128042-20128061 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 20123594 20128838 20123594 ID=Msa0842750;Name=Msa0842750
chr5_4 mRNA 20123594 20128838 20123594 ID=Msa0842750-mRNA-1;Parent=Msa0842750;Name=Msa0842750-mRNA-1;_AED=0.12;_eAED=0.12;_QI=302|1|1|1|0.91|0.84|13|283|423
chr5_4 exon 20123594 20123948 20123594 ID=Msa0842750-mRNA-1:exon:8349;Parent=Msa0842750-mRNA-1
chr5_4 exon 20124066 20124182 20124066 ID=Msa0842750-mRNA-1:exon:8348;Parent=Msa0842750-mRNA-1
chr5_4 exon 20124273 20124389 20124273 ID=Msa0842750-mRNA-1:exon:8347;Parent=Msa0842750-mRNA-1
chr5_4 exon 20125013 20125114 20125013 ID=Msa0842750-mRNA-1:exon:8346;Parent=Msa0842750-mRNA-1
chr5_4 exon 20125212 20125307 20125212 ID=Msa0842750-mRNA-1:exon:8345;Parent=Msa0842750-mRNA-1
chr5_4 exon 20126122 20126203 20126122 ID=Msa0842750-mRNA-1:exon:8344;Parent=Msa0842750-mRNA-1
chr5_4 exon 20126310 20126424 20126310 ID=Msa0842750-mRNA-1:exon:8343;Parent=Msa0842750-mRNA-1
chr5_4 exon 20126566 20126617 20126566 ID=Msa0842750-mRNA-1:exon:8342;Parent=Msa0842750-mRNA-1
chr5_4 exon 20126741 20126821 20126741 ID=Msa0842750-mRNA-1:exon:8341;Parent=Msa0842750-mRNA-1
chr5_4 exon 20126931 20127092 20126931 ID=Msa0842750-mRNA-1:exon:8340;Parent=Msa0842750-mRNA-1
chr5_4 exon 20127236 20127412 20127236 ID=Msa0842750-mRNA-1:exon:8339;Parent=Msa0842750-mRNA-1
chr5_4 exon 20128204 20128313 20128204 ID=Msa0842750-mRNA-1:exon:8338;Parent=Msa0842750-mRNA-1
chr5_4 exon 20128548 20128838 20128548 ID=Msa0842750-mRNA-1:exon:8337;Parent=Msa0842750-mRNA-1
chr5_4 five_prime_UTR 20128548 20128838 20128548 ID=Msa0842750-mRNA-1:five_prime_utr;Parent=Msa0842750-mRNA-1
chr5_4 five_prime_UTR 20128303 20128313 20128303 ID=Msa0842750-mRNA-1:five_prime_utr;Parent=Msa0842750-mRNA-1
chr5_4 CDS 20128204 20128302 20128204 ID=Msa0842750-mRNA-1:cds;Parent=Msa0842750-mRNA-1
chr5_4 CDS 20127236 20127412 20127236 ID=Msa0842750-mRNA-1:cds;Parent=Msa0842750-mRNA-1
chr5_4 CDS 20126931 20127092 20126931 ID=Msa0842750-mRNA-1:cds;Parent=Msa0842750-mRNA-1
chr5_4 CDS 20126741 20126821 20126741 ID=Msa0842750-mRNA-1:cds;Parent=Msa0842750-mRNA-1
chr5_4 CDS 20126566 20126617 20126566 ID=Msa0842750-mRNA-1:cds;Parent=Msa0842750-mRNA-1
chr5_4 CDS 20126310 20126424 20126310 ID=Msa0842750-mRNA-1:cds;Parent=Msa0842750-mRNA-1
chr5_4 CDS 20126122 20126203 20126122 ID=Msa0842750-mRNA-1:cds;Parent=Msa0842750-mRNA-1
chr5_4 CDS 20125212 20125307 20125212 ID=Msa0842750-mRNA-1:cds;Parent=Msa0842750-mRNA-1
chr5_4 CDS 20125013 20125114 20125013 ID=Msa0842750-mRNA-1:cds;Parent=Msa0842750-mRNA-1
chr5_4 CDS 20124273 20124389 20124273 ID=Msa0842750-mRNA-1:cds;Parent=Msa0842750-mRNA-1
chr5_4 CDS 20124066 20124182 20124066 ID=Msa0842750-mRNA-1:cds;Parent=Msa0842750-mRNA-1
chr5_4 CDS 20123877 20123948 20123877 ID=Msa0842750-mRNA-1:cds;Parent=Msa0842750-mRNA-1
chr5_4 three_prime_UTR 20123594 20123876 20123594 ID=Msa0842750-mRNA-1:three_prime_utr;Parent=Msa0842750-mRNA-1
Gene Sequence

>Msa0842750

ATGGCACGCAAGAAGATCAGAGAGTATGATTCTAAGAGATTGTTGAAGGAGCACTTTAAGAGACTTTCTGGCAAGGACTTACCTATCAAGTCTGCACAAGTTACGGAAGCCACTGATTTCACTGAGCTGCAAGACAAGGAACAATGGCTTTCTTCTTCTAAATTGGTTGTGAAACCTGACATGTTATTTGGGAAGCGTGGTAAAAGTGGTTTGGTTGCCTTGAATTTGGATTTGGCCCAAGTTGCTTCATTTGTGAAAGAGCGTCTTGGTAAAGAGGTTGAAATGGGTGGATGCAAGGGACCGATAACAACTTTCATTGTTGAACCTTTCATCCCACATAATGAAGAGTATTACCTTAACATTGTCTCTGACAGACTTGGAAACAGCATAAGCTTTTCAGAATGTGGAGGAATCGATATTGAAGAGAATTGGGATAAGGTTAAGACTGTTTTTATTCCAACGGGAGTGTCTCTTACATCAGAAATCATCGCCCCACTTGTTGCAACCCTTCCCTTGGAGATCAAGGGAGAAATTGAGGAATTTCTCAAGGTGATTTTCACTCTTTTTCAAGATCTGGATTTCACTTTCTTAGAGATGAATCCTTTTACATTGGTTGATGGAAAGCCTTATCCTTTGGATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAGTGGGGTAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTGCCACTGAGTCTTTCATTCATGGATTAGATGAAAAGACAAGTGCATCTCTAAAATTCACTGTGTTGAACCCAAAGGGCCGAATTTGGACAATGGTTGCTGGGGGAGGCGCTAGTGTCATCTACGCTGATACGGTAGGCGATCTTGGCTTTGCAAATGAGCTTGGAAACTATGCAGAATATAGTGGTGCACCCAATGAAGAGGAGGTTTTGCAGTATGCCAGAGTTGTAATTGATTGTGCAACTGCCGACCCCGATGGCCAAAAAAGGGCTCTTGTTATAGGTGGAGGCATAGCTAACTTCACTGATGTTGCTGCTACTTTTAGTGGCATAATTCGGGCACTAAAGGAGAAGGAATCAAAGTTAAAGGCAGCAAGAATGCACCTTTATGTGAGGCGAGGGGGTCCGAACTACCAAAAGGGTCTAGAAAAAATGCGAGCACTTGGAGAGGAAATTGGCATCCCGATTGAGGTTTATGGACCTGAAGCAACAATGACTGGTATATGCAAACAGGCAATACAGTGCATTACTGCTTCCGCTTAA

Protein sequence

>Msa0842750

MARKKIREYDSKRLLKEHFKRLSGKDLPIKSAQVTEATDFTELQDKEQWLSSSKLVVKPDMLFGKRGKSGLVALNLDLAQVASFVKERLGKEVEMGGCKGPITTFIVEPFIPHNEEYYLNIVSDRLGNSISFSECGGIDIEENWDKVKTVFIPTGVSLTSEIIAPLVATLPLEIKGEIEEFLKVIFTLFQDLDFTFLEMNPFTLVDGKPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSATESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGFANELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGQKRALVIGGGIANFTDVAATFSGIIRALKEKESKLKAARMHLYVRRGGPNYQKGLEKMRALGEEIGIPIEVYGPEATMTGICKQAIQCITASA*