AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033840 MtrunA17_Chr1g0194181 97.619 42 1 0 48 89 21 62 5.50e-23 83.6
Msa0033840 MtrunA17_Chr1g0194171 96.667 30 1 0 1 30 113 142 2.90e-15 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033840 AT1G02475.1 48.148 108 34 2 1 87 112 218 1.97e-24 92.0
Msa0033840 AT4G01883.1 47.273 110 36 3 1 89 114 222 3.57e-23 88.6
Msa0033840 AT1G02470.1 36.893 103 39 3 8 87 120 219 3.55e-15 67.8
Msa0033840 AT4G01883.2 43.023 86 27 3 1 65 114 198 2.15e-12 60.1
Msa0033840 AT4G01883.3 73.333 30 8 0 1 30 114 143 7.62e-11 55.8

Find 51 sgRNAs with CRISPR-Local

Find 558 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCCACAAGGTTGGGATTC+CGG 0.262628 1_1:-61665231 None:intergenic
GATTGAATTTCATAAAGATT+TGG 0.263236 1_1:+61665075 Msa0033840:three_prime_UTR
TGCCACAAGGTTGGGATTCC+GGG 0.269934 1_1:-61665230 None:intergenic
TTAATTCCTCACGGCTCTTA+TGG 0.271438 1_1:+61665150 Msa0033840:three_prime_UTR
GGTATGGGCACATGACTTAT+AGG 0.329071 1_1:-61665407 None:intergenic
ATTGAATTTCATAAAGATTT+GGG 0.337700 1_1:+61665076 Msa0033840:three_prime_UTR
GTCAGAATATTGAGTTCTCT+TGG 0.369456 1_1:+61660802 Msa0033840:CDS
TATGAAATTCAATCAGTGTT+TGG 0.377594 1_1:-61665066 None:intergenic
GAAAATCCATTGGCGATCTC+TGG 0.391451 1_1:+61660948 Msa0033840:CDS
TTCAGCAGTGCCACAAGGTT+GGG 0.392936 1_1:-61665238 None:intergenic
TTAAGTAAACCTTCAAGAAA+TGG 0.393153 1_1:-61664941 None:intergenic
AAAATGGAGCCCTGAAAATC+AGG 0.393353 1_1:-61665014 None:intergenic
CTCTGGATGGTCTTCCCAAC+AGG 0.395898 1_1:+61660965 Msa0033840:CDS
TGCGACAGGTCAGGTTTGTC+TGG 0.396361 1_1:-61660753 None:intergenic
AGGTTTACTTAAACGTGGTT+TGG 0.410150 1_1:+61664952 Msa0033840:CDS
AAATTACAATACAGCTGGTA+TGG 0.422046 1_1:-61665423 None:intergenic
TCCTTGAAGTATAAGGCATT+TGG 0.430828 1_1:+61660780 Msa0033840:CDS
TTATCATGCCAGTGTTGGTT+AGG 0.432396 1_1:+61665104 Msa0033840:three_prime_UTR
ACCAAATGCCTTATACTTCA+AGG 0.433774 1_1:-61660781 None:intergenic
TGCCTTTGTCAAACCATCTC+AGG 0.440630 1_1:+61665373 Msa0033840:three_prime_UTR
GAAATACTCCAACGTCTTGA+AGG 0.449380 1_1:-61665290 None:intergenic
AAGGACCATTGCGACAGGTC+AGG 0.449994 1_1:-61660762 None:intergenic
GCAATGGTCCTTGAAGTATA+AGG 0.452028 1_1:+61660773 Msa0033840:CDS
GCCCTTGTCAGTTACCTGTT+GGG 0.457466 1_1:-61660979 None:intergenic
GCACTGCAACCATTTCTTGA+AGG 0.468212 1_1:+61664932 Msa0033840:CDS
TCATGCCAGTGTTGGTTAGG+TGG 0.476834 1_1:+61665107 Msa0033840:three_prime_UTR
CACGGCTCTTATGGAAATCA+TGG 0.485343 1_1:+61665159 Msa0033840:three_prime_UTR
TTTCAGCAGTGCCACAAGGT+TGG 0.499342 1_1:-61665239 None:intergenic
TGAGATGGTTTGACAAAGGC+AGG 0.502974 1_1:-61665371 None:intergenic
GGTGCTTCTTAGTCCTGAGA+TGG 0.507389 1_1:-61665386 None:intergenic
TACGGTTATCATGCCAGTGT+TGG 0.537477 1_1:+61665099 Msa0033840:three_prime_UTR
AGAGTACTTACCGATGCCAC+TGG 0.543027 1_1:-61664168 None:intergenic
ACAGCTGACAGTCTCATATG+AGG 0.555155 1_1:+61664128 Msa0033840:intron
ATCCATTGGCGATCTCTGGA+TGG 0.567929 1_1:+61660952 Msa0033840:CDS
CTCCAAATCAGAAAATCCAT+TGG 0.568507 1_1:+61660938 Msa0033840:CDS
ATTTCATAAAGATTTGGGTA+CGG 0.572664 1_1:+61665081 Msa0033840:three_prime_UTR
TGTACAAATTACAATACAGC+TGG 0.574526 1_1:-61665428 None:intergenic
AATTACAATACAGCTGGTAT+GGG 0.574781 1_1:-61665422 None:intergenic
TGTCTTTCTATACAATAATG+AGG 0.578333 1_1:+61665454 Msa0033840:three_prime_UTR
AAATACTCCAACGTCTTGAA+GGG 0.584303 1_1:-61665289 None:intergenic
ACTTCAAGGACCATTGCGAC+AGG 0.589808 1_1:-61660767 None:intergenic
GACCATCCAGAGATCGCCAA+TGG 0.590298 1_1:-61660954 None:intergenic
AGCAGAAGATATGTTAAACC+CGG 0.595234 1_1:+61665212 Msa0033840:three_prime_UTR
ACAAACCTGACCTGTCGCAA+TGG 0.598815 1_1:+61660757 Msa0033840:CDS
TAAATCCACCTAACCAACAC+TGG 0.598962 1_1:-61665112 None:intergenic
GCCACTGGAGCTAAAAGTTG+AGG 0.601215 1_1:-61664153 None:intergenic
CTTGAAGGTTTACTTAAACG+TGG 0.606486 1_1:+61664947 Msa0033840:CDS
GTCCTGAGATGGTTTGACAA+AGG 0.631492 1_1:-61665375 None:intergenic
AACCCGGAATCCCAACCTTG+TGG 0.642268 1_1:+61665228 Msa0033840:three_prime_UTR
TAAGCTACCCTTCAAGACGT+TGG 0.644508 1_1:+61665282 Msa0033840:three_prime_UTR
TGATTTCCATAAGAGCCGTG+AGG 0.764444 1_1:-61665156 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAAATTTTAAATTT+TGG + chr1_1:61657593-61657612 Msa0033840:intron 0.0%
!!! TAAATTTTTTTTAATTTTAT+GGG - chr1_1:61657768-61657787 None:intergenic 0.0%
!!! TTAAATTTTTTTTAATTTTA+TGG - chr1_1:61657769-61657788 None:intergenic 0.0%
!!! ATTTTTTCTACTTATAATAA+AGG + chr1_1:61656935-61656954 Msa0033840:intron 10.0%
!!! CATATTTTATTTAATTTGTT+TGG + chr1_1:61657262-61657281 Msa0033840:intron 10.0%
!!! ATTTGAAATTCTTTATTTTT+AGG - chr1_1:61657558-61657577 None:intergenic 10.0%
!!! AATTTTTTGGAAATTTATTT+GGG - chr1_1:61657649-61657668 None:intergenic 10.0%
!! TAATTTCTTAAAAAAATTGA+GGG - chr1_1:61657682-61657701 None:intergenic 10.0%
!! ATAATTTCTTAAAAAAATTG+AGG - chr1_1:61657683-61657702 None:intergenic 10.0%
!!! TGTAATTTTAAAAAATTTGA+AGG - chr1_1:61657713-61657732 None:intergenic 10.0%
!! AAATTTGAAAATTGAAATTA+GGG - chr1_1:61657743-61657762 None:intergenic 10.0%
!!! TTTAAAGAATTTAAAATTTC+AGG - chr1_1:61657887-61657906 None:intergenic 10.0%
!!! TTAAATTCTTTAAAATTTCT+CGG + chr1_1:61657893-61657912 Msa0033840:intron 10.0%
!!! TTTTTTATTTTAACAATTCT+TGG + chr1_1:61658484-61658503 Msa0033840:intron 10.0%
!!! TTTTTATTTTAACAATTCTT+GGG + chr1_1:61658485-61658504 Msa0033840:intron 10.0%
!!! ATACAATTTCTAAAAATTTA+AGG - chr1_1:61659254-61659273 None:intergenic 10.0%
!!! TAAATTTTTAGAAATTGTAT+CGG + chr1_1:61659254-61659273 Msa0033840:intron 10.0%
!!! TTATAGTTTTTATGTAATTT+TGG - chr1_1:61663077-61663096 None:intergenic 10.0%
!! AAGTTAACATTAAATATATT+TGG - chr1_1:61664523-61664542 None:intergenic 10.0%
!! AATTCACATATATTTACATA+TGG + chr1_1:61656982-61657001 Msa0033840:intron 15.0%
!! ATTCACATATATTTACATAT+GGG + chr1_1:61656983-61657002 Msa0033840:intron 15.0%
!!! CAATTTTTTGGAAATTTATT+TGG - chr1_1:61657650-61657669 None:intergenic 15.0%
!! AATTTCTTAAAAAAATTGAG+GGG - chr1_1:61657681-61657700 None:intergenic 15.0%
!! AATTTGAAAATTGAAATTAG+GGG - chr1_1:61657742-61657761 None:intergenic 15.0%
!! CAAATTTGAAAATTGAAATT+AGG - chr1_1:61657744-61657763 None:intergenic 15.0%
!!! CTAATTTCAATTTTCAAATT+TGG + chr1_1:61657742-61657761 Msa0033840:intron 15.0%
!! TAAAAATGAAATTGTAATGT+TGG + chr1_1:61658003-61658022 Msa0033840:intron 15.0%
!!! TTAATTTACATGATCATTTT+GGG + chr1_1:61658285-61658304 Msa0033840:intron 15.0%
!! AAAAAAAAAACTAAATGAAC+AGG - chr1_1:61658464-61658483 None:intergenic 15.0%
!!! TTTTATTTTAACAATTCTTG+GGG + chr1_1:61658486-61658505 Msa0033840:intron 15.0%
!!! GTAGTAACTTTTTTATTTTA+GGG + chr1_1:61658508-61658527 Msa0033840:intron 15.0%
!! TTAAACAAAATCGAAAATTA+GGG - chr1_1:61658905-61658924 None:intergenic 15.0%
!! TTTAAACAAAATCGAAAATT+AGG - chr1_1:61658906-61658925 None:intergenic 15.0%
!!! CAATTTTTTTAGAATCAAAA+AGG + chr1_1:61659362-61659381 Msa0033840:intron 15.0%
!! TTGATTAACTATATTAACTT+TGG + chr1_1:61661333-61661352 Msa0033840:intron 15.0%
!! AAATGAAACAAAATAAAGAA+GGG - chr1_1:61661400-61661419 None:intergenic 15.0%
!! ATAAATAACTAATATGAAAG+AGG + chr1_1:61662644-61662663 Msa0033840:intron 15.0%
!! TAAATAACTAATATGAAAGA+GGG + chr1_1:61662645-61662664 Msa0033840:intron 15.0%
!! AATGTTCTAATTAATAATCA+AGG + chr1_1:61663198-61663217 Msa0033840:intron 15.0%
!! TCATCAATGTAAAATAAAAT+AGG - chr1_1:61663725-61663744 None:intergenic 15.0%
!!! AAAACATCACATTTTTATAA+AGG - chr1_1:61664196-61664215 None:intergenic 15.0%
!!! ATATATTGATAGTATTGATA+AGG + chr1_1:61664556-61664575 Msa0033840:intron 15.0%
!!! TATATTGATAGTATTGATAA+GGG + chr1_1:61664557-61664576 Msa0033840:intron 15.0%
!!! TGTATGTTCATTTTAAAAAA+TGG - chr1_1:61665033-61665052 None:intergenic 15.0%
!! ATTGAATTTCATAAAGATTT+GGG + chr1_1:61665076-61665095 Msa0033840:three_prime_UTR 15.0%
!! ATTTAATAAACTTGCAGTAA+TGG + chr1_1:61656741-61656760 Msa0033840:intron 20.0%
!!! ATAGATAGGATTTTAACTAA+AGG + chr1_1:61656787-61656806 Msa0033840:intron 20.0%
!!! TGAAAATTTTGGAAAATTTG+AGG - chr1_1:61657620-61657639 None:intergenic 20.0%
!!! ATTTCATTGTCATCATTTTT+GGG - chr1_1:61657797-61657816 None:intergenic 20.0%
!!! AATTTCATTGTCATCATTTT+TGG - chr1_1:61657798-61657817 None:intergenic 20.0%
!!! TTAATTTGTTCTATGTTGTT+TGG + chr1_1:61657980-61657999 Msa0033840:intron 20.0%
!! GTTGAAATTAAAAACATTCT+CGG + chr1_1:61658025-61658044 Msa0033840:intron 20.0%
!! AACATTAAAATCACGTTAAA+AGG - chr1_1:61658081-61658100 None:intergenic 20.0%
!!! CTTAATTTACATGATCATTT+TGG + chr1_1:61658284-61658303 Msa0033840:intron 20.0%
!!! TAATTTACATGATCATTTTG+GGG + chr1_1:61658286-61658305 Msa0033840:intron 20.0%
!!! GGTAGTAACTTTTTTATTTT+AGG + chr1_1:61658507-61658526 Msa0033840:intron 20.0%
!!! TTTTTTATTTTAGGGAATTC+TGG + chr1_1:61658516-61658535 Msa0033840:intron 20.0%
!!! TTTTTATTTTAGGGAATTCT+GGG + chr1_1:61658517-61658536 Msa0033840:intron 20.0%
!! TAAACAAAATCGAAAATTAG+GGG - chr1_1:61658904-61658923 None:intergenic 20.0%
!!! ATTTCTAAAAATTTAAGGTG+CGG - chr1_1:61659249-61659268 None:intergenic 20.0%
!!! CCTATTTTAAAGATTTGTTA+CGG - chr1_1:61659418-61659437 None:intergenic 20.0%
!!! CGTAACAAATCTTTAAAATA+GGG + chr1_1:61659416-61659435 Msa0033840:intron 20.0%
!!! GTAACAAATCTTTAAAATAG+GGG + chr1_1:61659417-61659436 Msa0033840:intron 20.0%
!!! GTAATAATTAAGAGTACTAT+TGG - chr1_1:61659571-61659590 None:intergenic 20.0%
!! TAAAGTACAAAATGATACTT+TGG - chr1_1:61659608-61659627 None:intergenic 20.0%
!!! TAGTAAAAGTATCATATCTT+TGG + chr1_1:61659672-61659691 Msa0033840:intron 20.0%
!!! CAATTTGTTGAAATATACAA+AGG + chr1_1:61659845-61659864 Msa0033840:intron 20.0%
!! TTGAAATATACAAAGGAAAT+CGG + chr1_1:61659852-61659871 Msa0033840:intron 20.0%
!! AGTTAAGAATCATTCAATAA+TGG + chr1_1:61659957-61659976 Msa0033840:intron 20.0%
!! AAATTAGTTGAATTCAAACT+AGG + chr1_1:61660081-61660100 Msa0033840:intron 20.0%
!! AATATCATAATCACTATTGT+TGG + chr1_1:61660353-61660372 Msa0033840:intron 20.0%
!! AATTGAAAATCTTTACCTTA+TGG + chr1_1:61660388-61660407 Msa0033840:intron 20.0%
!! TTAATGAAGAAATATGTACA+GGG - chr1_1:61661117-61661136 None:intergenic 20.0%
!! ATTAATGAAGAAATATGTAC+AGG - chr1_1:61661118-61661137 None:intergenic 20.0%
!! AATGAAACAAAATAAAGAAG+GGG - chr1_1:61661399-61661418 None:intergenic 20.0%
!! GAAATGAAACAAAATAAAGA+AGG - chr1_1:61661401-61661420 None:intergenic 20.0%
!! TAAATGAGTAATGAAAAAGA+AGG + chr1_1:61661502-61661521 Msa0033840:intron 20.0%
!! TATTAAGGATGTTTGTAAAA+TGG + chr1_1:61662069-61662088 Msa0033840:intron 20.0%
!! ATTAAGGATGTTTGTAAAAT+GGG + chr1_1:61662070-61662089 Msa0033840:intron 20.0%
!! AATGTAAATAAAAATGGTTC+AGG + chr1_1:61662124-61662143 Msa0033840:intron 20.0%
!! ACAAATTAACAAAATAGCTT+AGG + chr1_1:61662255-61662274 Msa0033840:intron 20.0%
!!! TTAAAACCTTTGATGATTAT+AGG - chr1_1:61662340-61662359 None:intergenic 20.0%
!! ATTTATACTGTTCAATCTAA+CGG - chr1_1:61662413-61662432 None:intergenic 20.0%
!!! TACTCTAAAATCAGTTATAT+TGG + chr1_1:61662469-61662488 Msa0033840:intron 20.0%
!!! ACTCTAAAATCAGTTATATT+GGG + chr1_1:61662470-61662489 Msa0033840:intron 20.0%
!! TTATACTGAATAAACTAGAA+TGG + chr1_1:61662521-61662540 Msa0033840:intron 20.0%
!!! TATGTTTTTGCTTTGATATT+AGG + chr1_1:61663250-61663269 Msa0033840:intron 20.0%
!! TTGATATTAGGTAAAACTTA+TGG + chr1_1:61663262-61663281 Msa0033840:intron 20.0%
!!! AGATTATGTTTTATGACAAA+CGG - chr1_1:61663462-61663481 None:intergenic 20.0%
!! TTAACTTCTAACATGAAATT+AGG + chr1_1:61663995-61664014 Msa0033840:intron 20.0%
!!! ATACCCAATTTTTCATTATT+TGG + chr1_1:61664249-61664268 Msa0033840:intron 20.0%
!!! TACCCAATTTTTCATTATTT+GGG + chr1_1:61664250-61664269 Msa0033840:intron 20.0%
!! CTTTCCTAATTTATTTGTTT+GGG + chr1_1:61664304-61664323 Msa0033840:intron 20.0%
!!! ATATTGATAGTATTGATAAG+GGG + chr1_1:61664558-61664577 Msa0033840:intron 20.0%
!!! TGTAGATAGTCTTATATTTA+AGG + chr1_1:61664619-61664638 Msa0033840:intron 20.0%
!! TTGTAAACGATCTTATATTT+AGG + chr1_1:61664654-61664673 Msa0033840:intron 20.0%
!! TGTAAACGATCTTATATTTA+GGG + chr1_1:61664655-61664674 Msa0033840:intron 20.0%
!!! TTCCAAAAAATATCAAGTTT+TGG + chr1_1:61664749-61664768 Msa0033840:intron 20.0%
!!! AACCAAAACTTGATATTTTT+TGG - chr1_1:61664754-61664773 None:intergenic 20.0%
!! GATTGAATTTCATAAAGATT+TGG + chr1_1:61665075-61665094 Msa0033840:three_prime_UTR 20.0%
!! AGGAATTAACACTTAAAAAT+GGG - chr1_1:61665139-61665158 None:intergenic 20.0%
! CACTAGAATAATGTAGAAAA+TGG - chr1_1:61656638-61656657 None:intergenic 25.0%
! AATGAAGAGAGAAAATAGAT+AGG + chr1_1:61656773-61656792 Msa0033840:intron 25.0%
!!! TATTCTAAAGTTTGATCGAA+AGG - chr1_1:61656867-61656886 None:intergenic 25.0%
! ATAATAAAGGCTAAATCATG+AGG + chr1_1:61656948-61656967 Msa0033840:intron 25.0%
!! TTAGTGTTTTTCTTATGTTG+CGG - chr1_1:61657175-61657194 None:intergenic 25.0%
! AATTGAGCTTATATGAGTAT+CGG - chr1_1:61657218-61657237 None:intergenic 25.0%
! ATACAATCTTAGAGTGTATT+TGG + chr1_1:61657377-61657396 Msa0033840:intron 25.0%
!! TTGGGTCAATATGAAAATTT+TGG - chr1_1:61657631-61657650 None:intergenic 25.0%
!! CATTTCTCAATACTTTTGTT+TGG - chr1_1:61657835-61657854 None:intergenic 25.0%
! GAAATGTAAAAGACTATGTT+TGG - chr1_1:61657928-61657947 None:intergenic 25.0%
! AGATAAAAAAACATGTGGTT+TGG - chr1_1:61658209-61658228 None:intergenic 25.0%
!!! ATGTAAATTAAGAGTGTTTG+TGG - chr1_1:61658276-61658295 None:intergenic 25.0%
!!! GGTTACAAAGTTTTATTGAA+AGG + chr1_1:61658361-61658380 Msa0033840:intron 25.0%
! GAAATGTTGAAATGTTTGTT+TGG + chr1_1:61658438-61658457 Msa0033840:intron 25.0%
!!! TTTTATTTTAGGGAATTCTG+GGG + chr1_1:61658518-61658537 Msa0033840:intron 25.0%
! TAACTTGATATGTTGAATGT+TGG + chr1_1:61658545-61658564 Msa0033840:intron 25.0%
! CTAATTTAGTGCAATTTAGA+CGG + chr1_1:61659096-61659115 Msa0033840:intron 25.0%
! TAATTTAGTGCAATTTAGAC+GGG + chr1_1:61659097-61659116 Msa0033840:intron 25.0%
! CTAATTTAGTGCAATTTAGA+CGG + chr1_1:61659096-61659115 Msa0033840:intron 25.0%
! TAATTTAGTGCAATTTAGAC+GGG + chr1_1:61659097-61659116 Msa0033840:intron 25.0%
!! TTTCTAAAAATTTAAGGTGC+GGG - chr1_1:61659248-61659267 None:intergenic 25.0%
!! ACTTCAAGTTATCTCATATT+GGG - chr1_1:61659339-61659358 None:intergenic 25.0%
!!! CCGTAACAAATCTTTAAAAT+AGG + chr1_1:61659415-61659434 Msa0033840:intron 25.0%
!! TATATTTTCTAATGGGATTG+TGG - chr1_1:61659451-61659470 None:intergenic 25.0%
!! GATGGAGTATATTTTCTAAT+GGG - chr1_1:61659458-61659477 None:intergenic 25.0%
! AATGCAAAATGTAACATTGA+AGG + chr1_1:61659772-61659791 Msa0033840:intron 25.0%
! ATTGAGAGTCAATTCAATAA+TGG + chr1_1:61660006-61660025 Msa0033840:intron 25.0%
!!! ATTAGCCTTGTAATTAATCA+GGG - chr1_1:61660336-61660355 None:intergenic 25.0%
!!! TATTAGCCTTGTAATTAATC+AGG - chr1_1:61660337-61660356 None:intergenic 25.0%
!!! TTTGATTTTATGCAAAACGT+TGG + chr1_1:61660711-61660730 Msa0033840:intron 25.0%
! AATCAAATGTTTCCTAATGT+TGG - chr1_1:61661064-61661083 None:intergenic 25.0%
!!! TTTTAATTTAGCAGATCACT+TGG - chr1_1:61661238-61661257 None:intergenic 25.0%
!!! TACACTTGATAATGCTTAAT+TGG + chr1_1:61661439-61661458 Msa0033840:intron 25.0%
! CATTACTCATTTATGAGAAA+TGG - chr1_1:61661495-61661514 None:intergenic 25.0%
!!! TGTTTGATAATGTATGTTCT+AGG + chr1_1:61661611-61661630 Msa0033840:intron 25.0%
!! CCAACATTTTATCCATTTAT+AGG - chr1_1:61661752-61661771 None:intergenic 25.0%
! CCTATAAATGGATAAAATGT+TGG + chr1_1:61661749-61661768 Msa0033840:intron 25.0%
!! TAAAATGTTGGCTATATAAG+TGG + chr1_1:61661761-61661780 Msa0033840:intron 25.0%
!! AAAATGTTGGCTATATAAGT+GGG + chr1_1:61661762-61661781 Msa0033840:intron 25.0%
! TTATTCTTAGGCATAATGTT+GGG - chr1_1:61661897-61661916 None:intergenic 25.0%
! TTTATTCTTAGGCATAATGT+TGG - chr1_1:61661898-61661917 None:intergenic 25.0%
! AGCTCAAAATGTTTATTCTT+AGG - chr1_1:61661909-61661928 None:intergenic 25.0%
! TTAAGGATGTTTGTAAAATG+GGG + chr1_1:61662071-61662090 Msa0033840:intron 25.0%
! AAAAATGGTTCAGGTAAAAT+TGG + chr1_1:61662133-61662152 Msa0033840:intron 25.0%
! GGAATTATAATCAGAAAAGA+GGG - chr1_1:61662300-61662319 None:intergenic 25.0%
! GGTTGTGATAATTGAATTAA+CGG - chr1_1:61662365-61662384 None:intergenic 25.0%
! TCATAAAGATTAAGAGTTAC+AGG + chr1_1:61662547-61662566 Msa0033840:intron 25.0%
!!! ATGTAATTTTGGTTGAGTTT+AGG - chr1_1:61663066-61663085 None:intergenic 25.0%
! TAATAATCAAGGTTGCATTA+TGG + chr1_1:61663209-61663228 Msa0033840:intron 25.0%
! TTACTTTGATGCCATATTTA+GGG + chr1_1:61663780-61663799 Msa0033840:intron 25.0%
! CATATTTAGGGGAAAAAATT+GGG + chr1_1:61663792-61663811 Msa0033840:intron 25.0%
! TAGAATGAGAAACTTACAAT+TGG - chr1_1:61663827-61663846 None:intergenic 25.0%
!!! GTGATGTTTTTTACAACTTT+AGG + chr1_1:61664206-61664225 Msa0033840:intron 25.0%
! AAAAATTGGGTATTCTTTCA+CGG - chr1_1:61664242-61664261 None:intergenic 25.0%
!! ACCCAATTTTTCATTATTTG+GGG + chr1_1:61664251-61664270 Msa0033840:intron 25.0%
! TCCCCAAATAATGAAAAATT+GGG - chr1_1:61664255-61664274 None:intergenic 25.0%
!! AATTTTTCATTATTTGGGGA+CGG + chr1_1:61664255-61664274 Msa0033840:intron 25.0%
! GCTTTCCTAATTTATTTGTT+TGG + chr1_1:61664303-61664322 Msa0033840:intron 25.0%
! AGAACCCAAACAAATAAATT+AGG - chr1_1:61664311-61664330 None:intergenic 25.0%
!!! AGACTAGTTTACAAAAATCA+CGG + chr1_1:61664428-61664447 Msa0033840:intron 25.0%
! TTACTAACTACTCAATTTGA+AGG + chr1_1:61664782-61664801 Msa0033840:intron 25.0%
! TTAAGTAAACCTTCAAGAAA+TGG - chr1_1:61664944-61664963 None:intergenic 25.0%
! TATGAAATTCAATCAGTGTT+TGG - chr1_1:61665069-61665088 None:intergenic 25.0%
! ATTTCATAAAGATTTGGGTA+CGG + chr1_1:61665081-61665100 Msa0033840:three_prime_UTR 25.0%
! GAGGAATTAACACTTAAAAA+TGG - chr1_1:61665140-61665159 None:intergenic 25.0%
!!! TTTTAAGTGTTAATTCCTCA+CGG + chr1_1:61665141-61665160 Msa0033840:three_prime_UTR 25.0%
! TGTCTTTCTATACAATAATG+AGG + chr1_1:61665454-61665473 Msa0033840:three_prime_UTR 25.0%
!!! ATTTTTTAGTGTTAGCACCA+CGG - chr1_1:61656911-61656930 None:intergenic 30.0%
!!! GTTTTTCTATTGGATTGGTT+CGG - chr1_1:61657018-61657037 None:intergenic 30.0%
! TTGAGGTTTTTCTATTGGAT+TGG - chr1_1:61657023-61657042 None:intergenic 30.0%
!! TCGATTTGAGGTTTTTCTAT+TGG - chr1_1:61657028-61657047 None:intergenic 30.0%
! TTTTACTCAACTGCATTGTT+TGG + chr1_1:61657107-61657126 Msa0033840:intron 30.0%
AATCTTAGAGTGTATTTGGA+TGG + chr1_1:61657381-61657400 Msa0033840:intron 30.0%
ATCTTAGAGTGTATTTGGAT+GGG + chr1_1:61657382-61657401 Msa0033840:intron 30.0%
GAGGGAATTTAAATACTTTG+AGG + chr1_1:61657433-61657452 Msa0033840:intron 30.0%
TTGAGGTGAATTTCATTGTT+CGG + chr1_1:61657450-61657469 Msa0033840:intron 30.0%
TAAAAGACTATGTTTGGATG+AGG - chr1_1:61657922-61657941 None:intergenic 30.0%
!! AAAAAACATGTGGTTTGGTT+TGG - chr1_1:61658204-61658223 None:intergenic 30.0%
!!! CCACATGTTTTTTTATCTTG+CGG + chr1_1:61658211-61658230 Msa0033840:intron 30.0%
!!! TGTTTTTTTATCTTGCGGTT+CGG + chr1_1:61658216-61658235 Msa0033840:intron 30.0%
ATGCAATTCTATATTTGCAC+TGG + chr1_1:61658340-61658359 Msa0033840:intron 30.0%
CTAAACTAGATGTGTATTTG+TGG + chr1_1:61658623-61658642 Msa0033840:intron 30.0%
!! TTCTAACCGACTCTAATTTT+CGG + chr1_1:61658725-61658744 Msa0033840:intron 30.0%
TATTTCCCGAAAATTAGAGT+CGG - chr1_1:61658734-61658753 None:intergenic 30.0%
! GACTTCAAGTTATCTCATAT+TGG - chr1_1:61659340-61659359 None:intergenic 30.0%
AGAATCAAAAAGGACTTTGA+TGG + chr1_1:61659372-61659391 Msa0033840:intron 30.0%
GAATCAAAAAGGACTTTGAT+GGG + chr1_1:61659373-61659392 Msa0033840:intron 30.0%
! GGATGGAGTATATTTTCTAA+TGG - chr1_1:61659459-61659478 None:intergenic 30.0%
!! AAGCGACACTCATTTTAAAA+CGG - chr1_1:61659480-61659499 None:intergenic 30.0%
AAAATAGCCTCGTTAGTTAT+TGG - chr1_1:61659653-61659672 None:intergenic 30.0%
GCGAAATTGTACTAGTAATT+TGG + chr1_1:61659879-61659898 Msa0033840:intron 30.0%
ACCTTAACAGTGGAAATAAA+GGG - chr1_1:61660294-61660313 None:intergenic 30.0%
TGTAATTAATCAGGGTTAGA+AGG - chr1_1:61660328-61660347 None:intergenic 30.0%
TCTAACCCTGATTAATTACA+AGG + chr1_1:61660328-61660347 Msa0033840:intron 30.0%
! TAGATTAAACTGTGTTGATG+AGG + chr1_1:61660457-61660476 Msa0033840:intron 30.0%
!! TGCCTTTTCTTTGGAAATTT+CGG + chr1_1:61661034-61661053 Msa0033840:intron 30.0%
TACCGAAATTTCCAAAGAAA+AGG - chr1_1:61661039-61661058 None:intergenic 30.0%
GATAAACTACAGTAATGCTT+GGG - chr1_1:61661167-61661186 None:intergenic 30.0%
AGATAAACTACAGTAATGCT+TGG - chr1_1:61661168-61661187 None:intergenic 30.0%
! GCACATCATCAAGTATTTTT+AGG - chr1_1:61661208-61661227 None:intergenic 30.0%
!! TCTTTTTGTTTACCGAACAA+AGG - chr1_1:61661284-61661303 None:intergenic 30.0%
TTTGTTCGGTAAACAAAAAG+AGG + chr1_1:61661283-61661302 Msa0033840:intron 30.0%
CATTATCAAGTGTAACCTAA+TGG - chr1_1:61661433-61661452 None:intergenic 30.0%
CAAAATACTGCTATAAGAAC+TGG - chr1_1:61661659-61661678 None:intergenic 30.0%
! TTCTTATAGCAGTATTTTGC+TGG + chr1_1:61661660-61661679 Msa0033840:intron 30.0%
AATACGTAAAAGCTGGATAT+TGG - chr1_1:61661695-61661714 None:intergenic 30.0%
! AATATCCAGCTTTTACGTAT+TGG + chr1_1:61661694-61661713 Msa0033840:intron 30.0%
TATCCATTTATAGGCAATGT+GGG - chr1_1:61661743-61661762 None:intergenic 30.0%
TTATCCATTTATAGGCAATG+TGG - chr1_1:61661744-61661763 None:intergenic 30.0%
! AAATGTTGGCTATATAAGTG+GGG + chr1_1:61661763-61661782 Msa0033840:intron 30.0%
TATTCTTAGGCATAATGTTG+GGG - chr1_1:61661896-61661915 None:intergenic 30.0%
TTTATAAGATTCGTATCCAC+AGG + chr1_1:61662012-61662031 Msa0033840:intron 30.0%
TTATAAGATTCGTATCCACA+GGG + chr1_1:61662013-61662032 Msa0033840:intron 30.0%
CGGGAATGTCATTATTATTA+AGG + chr1_1:61662054-61662073 Msa0033840:intron 30.0%
TAAGGATGTTTGTAAAATGG+GGG + chr1_1:61662072-61662091 Msa0033840:intron 30.0%
GGGAATTATAATCAGAAAAG+AGG - chr1_1:61662301-61662320 None:intergenic 30.0%
TTATAATTCCCTAATCCCTT+AGG + chr1_1:61662310-61662329 Msa0033840:intron 30.0%
ATGATTATAGGTTCACCTAA+GGG - chr1_1:61662328-61662347 None:intergenic 30.0%
ATCTCTTAACCTAATCACAA+AGG + chr1_1:61662598-61662617 Msa0033840:intron 30.0%
AGGGATTCATTACATGAAAT+TGG + chr1_1:61662664-61662683 Msa0033840:intron 30.0%
GGGATTCATTACATGAAATT+GGG + chr1_1:61662665-61662684 Msa0033840:intron 30.0%
! AGTTTGAAGCTACAAAAGAA+CGG - chr1_1:61663031-61663050 None:intergenic 30.0%
TAGAACATTTCACTGCTATA+AGG - chr1_1:61663187-61663206 None:intergenic 30.0%
AAAATGCAATGCTTCAATCA+TGG + chr1_1:61663342-61663361 Msa0033840:intron 30.0%
TTTAATGCAAACAGAGAACA+TGG - chr1_1:61663587-61663606 None:intergenic 30.0%
TAATTGTCTGATTTCTCATG+TGG + chr1_1:61663614-61663633 Msa0033840:intron 30.0%
TAAAATGCCTTACTTCTACA+AGG - chr1_1:61663682-61663701 None:intergenic 30.0%
CTTACTTTGATGCCATATTT+AGG + chr1_1:61663779-61663798 Msa0033840:intron 30.0%
TACTTTGATGCCATATTTAG+GGG + chr1_1:61663781-61663800 Msa0033840:intron 30.0%
!!! CCAATTTTTTCCCCTAAATA+TGG - chr1_1:61663794-61663813 None:intergenic 30.0%
CCATATTTAGGGGAAAAAAT+TGG + chr1_1:61663791-61663810 Msa0033840:intron 30.0%
GAGAAACTTACAATTGGTAT+TGG - chr1_1:61663821-61663840 None:intergenic 30.0%
! ATGTTAGAAGTTAAAAGCGT+GGG - chr1_1:61663989-61664008 None:intergenic 30.0%
GTCCCCAAATAATGAAAAAT+TGG - chr1_1:61664256-61664275 None:intergenic 30.0%
CGGATAAAAAGTAAGAAAAG+TGG + chr1_1:61664275-61664294 Msa0033840:intron 30.0%
CTAAATGAACAACTCACTTT+AGG + chr1_1:61664338-61664357 Msa0033840:intron 30.0%
TTTGGACACAAATGACAATT+TGG - chr1_1:61664505-61664524 None:intergenic 30.0%
AACGATCTTATATTTAGGGA+TGG + chr1_1:61664659-61664678 Msa0033840:intron 30.0%
ATCTTATATTTAGGGATGGA+GGG + chr1_1:61664663-61664682 Msa0033840:intron 30.0%
TGAAAAGTGAGATTAACGAA+TGG - chr1_1:61664816-61664835 None:intergenic 30.0%
! AAATGATTGTCCTGATTTTC+AGG + chr1_1:61665004-61665023 Msa0033840:exon 30.0%
! AATGATTGTCCTGATTTTCA+GGG + chr1_1:61665005-61665024 Msa0033840:exon 30.0%
AATTACAATACAGCTGGTAT+GGG - chr1_1:61665425-61665444 None:intergenic 30.0%
AAATTACAATACAGCTGGTA+TGG - chr1_1:61665426-61665445 None:intergenic 30.0%
TGTACAAATTACAATACAGC+TGG - chr1_1:61665431-61665450 None:intergenic 30.0%
GAATACATCCAAACCAAATG+CGG - chr1_1:61657078-61657097 None:intergenic 35.0%
! GTTTTTCTTATGTTGCGGTT+TGG - chr1_1:61657170-61657189 None:intergenic 35.0%
TCTTAGAGTGTATTTGGATG+GGG + chr1_1:61657383-61657402 Msa0033840:intron 35.0%
TGAGGTAATGTAATGTTTCG+AGG + chr1_1:61657414-61657433 Msa0033840:intron 35.0%
GAGGTAATGTAATGTTTCGA+GGG + chr1_1:61657415-61657434 Msa0033840:intron 35.0%
!!! GGGGTCAATTTGCAATTTTT+TGG - chr1_1:61657662-61657681 None:intergenic 35.0%
! GAACCAAATCAATGTCGTTT+CGG - chr1_1:61658155-61658174 None:intergenic 35.0%
!! GAAACGACATTGATTTGGTT+CGG + chr1_1:61658154-61658173 Msa0033840:intron 35.0%
CCGCAAGATAAAAAAACATG+TGG - chr1_1:61658214-61658233 None:intergenic 35.0%
!! AATTAAGAGTGTTTGTGGTG+CGG - chr1_1:61658271-61658290 None:intergenic 35.0%
!! TCTAACCGACTCTAATTTTC+GGG + chr1_1:61658726-61658745 Msa0033840:intron 35.0%
CTTGTGTGACATTAATGTCA+CGG + chr1_1:61658754-61658773 Msa0033840:intron 35.0%
ATTAAATCTGAGCCACACAT+TGG + chr1_1:61658781-61658800 Msa0033840:intron 35.0%
ATCTAATGTCATCCAATGTG+TGG - chr1_1:61658796-61658815 None:intergenic 35.0%
ATGACATTAGATGTGTTGTG+TGG + chr1_1:61658804-61658823 Msa0033840:intron 35.0%
ACAAAATCGAAAATTAGGGG+TGG - chr1_1:61658901-61658920 None:intergenic 35.0%
ATAACAAAGCTCAACCCATT+TGG + chr1_1:61658986-61659005 Msa0033840:intron 35.0%
TAACAAAGCTCAACCCATTT+GGG + chr1_1:61658987-61659006 Msa0033840:intron 35.0%
TCTCTCTACTGCAATTTAGA+CGG + chr1_1:61659072-61659091 Msa0033840:intron 35.0%
TATCGGTATCCATATCGTAT+CGG + chr1_1:61659271-61659290 Msa0033840:intron 35.0%
ATAATCTAGCGATGTTGCAT+AGG - chr1_1:61659316-61659335 None:intergenic 35.0%
! ATTTGTTACGGCTACTTGAT+TGG - chr1_1:61659406-61659425 None:intergenic 35.0%
!!! GACACTCATTTTAAAACGGA+TGG - chr1_1:61659476-61659495 None:intergenic 35.0%
AAATGCACCAATAACTAACG+AGG + chr1_1:61659643-61659662 Msa0033840:intron 35.0%
TTCCTTAATCTGTGTGCAAT+TGG + chr1_1:61659709-61659728 Msa0033840:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr1_1:61659735-61659754 Msa0033840:intron 35.0%
CATAGATTTATGATAGACCG+TGG - chr1_1:61659813-61659832 None:intergenic 35.0%
CACCTTAACAGTGGAAATAA+AGG - chr1_1:61660295-61660314 None:intergenic 35.0%
TCACATGCTATGATTCCATA+AGG - chr1_1:61660406-61660425 None:intergenic 35.0%
ACAGTTTAATCTAGTCTGAC+AGG - chr1_1:61660450-61660469 None:intergenic 35.0%
! TCCTTGAAGTATAAGGCATT+TGG + chr1_1:61660780-61660799 Msa0033840:CDS 35.0%
ACCAAATGCCTTATACTTCA+AGG - chr1_1:61660784-61660803 None:intergenic 35.0%
GTCAGAATATTGAGTTCTCT+TGG + chr1_1:61660802-61660821 Msa0033840:CDS 35.0%
!! AAGAAGCAAAAGTATCAGGT+AGG - chr1_1:61660856-61660875 None:intergenic 35.0%
!! CGAAAAGAAGCAAAAGTATC+AGG - chr1_1:61660860-61660879 None:intergenic 35.0%
!!! TGGATTTTCTGATTTGGAGT+GGG - chr1_1:61660937-61660956 None:intergenic 35.0%
!!! ATGGATTTTCTGATTTGGAG+TGG - chr1_1:61660938-61660957 None:intergenic 35.0%
CTCCAAATCAGAAAATCCAT+TGG + chr1_1:61660938-61660957 Msa0033840:CDS 35.0%
!! GTGCTTTATTGCCTTTTCTT+TGG + chr1_1:61661025-61661044 Msa0033840:intron 35.0%
AATTTCGGTAGTCCAACATT+AGG + chr1_1:61661049-61661068 Msa0033840:intron 35.0%
TCTTGCCATTAACCTTTGTT+CGG + chr1_1:61661269-61661288 Msa0033840:intron 35.0%
GTTTACCGAACAAAGGTTAA+TGG - chr1_1:61661277-61661296 None:intergenic 35.0%
TGTAACCTAATGGCATGTTT+CGG - chr1_1:61661423-61661442 None:intergenic 35.0%
AGGTATTCTGATATATGTGC+TGG + chr1_1:61661575-61661594 Msa0033840:intron 35.0%
! ATAGCAGTATTTTGCTGGTA+AGG + chr1_1:61661665-61661684 Msa0033840:intron 35.0%
AAAAGCCAATACGTAAAAGC+TGG - chr1_1:61661702-61661721 None:intergenic 35.0%
! CCTTAAGGCATTAGGTATAT+AGG - chr1_1:61661792-61661811 None:intergenic 35.0%
CCTATATACCTAATGCCTTA+AGG + chr1_1:61661789-61661808 Msa0033840:intron 35.0%
! TACCTAATGCCTTAAGGTTT+TGG + chr1_1:61661795-61661814 Msa0033840:intron 35.0%
! ACCTAATGCCTTAAGGTTTT+GGG + chr1_1:61661796-61661815 Msa0033840:intron 35.0%
GGACTATTTCAACTTCTACT+CGG + chr1_1:61662034-61662053 Msa0033840:intron 35.0%
GACTATTTCAACTTCTACTC+GGG + chr1_1:61662035-61662054 Msa0033840:intron 35.0%
AAGGATGTTTGTAAAATGGG+GGG + chr1_1:61662073-61662092 Msa0033840:intron 35.0%
TGGTTTGAGAAATGATAGAG+AGG + chr1_1:61662153-61662172 Msa0033840:intron 35.0%
CGTTCGTAAACTTAAGAAAC+AGG - chr1_1:61662221-61662240 None:intergenic 35.0%
ATAATCAGAAAAGAGGGCTT+AGG - chr1_1:61662294-61662313 None:intergenic 35.0%
GATGATTATAGGTTCACCTA+AGG - chr1_1:61662329-61662348 None:intergenic 35.0%
GGTGAACCTATAATCATCAA+AGG + chr1_1:61662331-61662350 Msa0033840:intron 35.0%
! TCAATCTAACGGACAATCTA+GGG - chr1_1:61662402-61662421 None:intergenic 35.0%
! TTCAATCTAACGGACAATCT+AGG - chr1_1:61662403-61662422 None:intergenic 35.0%
TAGCTAGATCCTTTGTGATT+AGG - chr1_1:61662610-61662629 None:intergenic 35.0%
CATTACATGAAATTGGGAAC+CGG + chr1_1:61662671-61662690 Msa0033840:intron 35.0%
AGACCATCAAAACTCAAATC+CGG - chr1_1:61662693-61662712 None:intergenic 35.0%
!! TGGAGAAAGAAACTGACTTT+TGG - chr1_1:61662742-61662761 None:intergenic 35.0%
CTTTAGTCACGTGAAAAATC+GGG - chr1_1:61662930-61662949 None:intergenic 35.0%
GCTTTAGTCACGTGAAAAAT+CGG - chr1_1:61662931-61662950 None:intergenic 35.0%
!! AAAGAACGGATTTTGAGTAC+TGG - chr1_1:61663017-61663036 None:intergenic 35.0%
TTATATGACCTAGTGTCATC+AGG + chr1_1:61663105-61663124 Msa0033840:intron 35.0%
!!! ACTGCAGATCTCTTGTTTTA+AGG + chr1_1:61663144-61663163 Msa0033840:intron 35.0%
!!! CTGCAGATCTCTTGTTTTAA+GGG + chr1_1:61663145-61663164 Msa0033840:intron 35.0%
!!! TCTTGTTTTAAGGGAGTAGA+AGG + chr1_1:61663154-61663173 Msa0033840:intron 35.0%
! TGTATCTTGTTTAAGCCATC+CGG + chr1_1:61663381-61663400 Msa0033840:intron 35.0%
CATGTTAGAAGTTAAAAGCG+TGG - chr1_1:61663990-61664009 None:intergenic 35.0%
TGCTTGACTAAAAGCTGAAT+GGG - chr1_1:61664074-61664093 None:intergenic 35.0%
! AGTCTTGTAAAACGAACGAA+GGG - chr1_1:61664413-61664432 None:intergenic 35.0%
!! TAGTCTTGTAAAACGAACGA+AGG - chr1_1:61664414-61664433 None:intergenic 35.0%
GATCTTATATTTAGGGATGG+AGG + chr1_1:61664662-61664681 Msa0033840:intron 35.0%
!! TCACTTTTCACCAGTTACAA+TGG + chr1_1:61664826-61664845 Msa0033840:intron 35.0%
AGATAAGAGTCCATTGTAAC+TGG - chr1_1:61664839-61664858 None:intergenic 35.0%
CTTGAAGGTTTACTTAAACG+TGG + chr1_1:61664947-61664966 Msa0033840:CDS 35.0%
AGGTTTACTTAAACGTGGTT+TGG + chr1_1:61664952-61664971 Msa0033840:CDS 35.0%
! TTTGTAGCTTTTTGCAAACG+TGG - chr1_1:61664987-61665006 None:intergenic 35.0%
AGCAGAAGATATGTTAAACC+CGG + chr1_1:61665212-61665231 Msa0033840:three_prime_UTR 35.0%
AAATACTCCAACGTCTTGAA+GGG - chr1_1:61665292-61665311 None:intergenic 35.0%
! AAACCAAATGCGGTTTTCTG+CGG - chr1_1:61657068-61657087 None:intergenic 40.0%
CTCAACTGCATTGTTTGGTT+CGG + chr1_1:61657112-61657131 Msa0033840:intron 40.0%
!! TCTTATGTTGCGGTTTGGTT+TGG - chr1_1:61657165-61657184 None:intergenic 40.0%
!! GCTTATATGAGTATCGGTCT+AGG - chr1_1:61657212-61657231 None:intergenic 40.0%
CTTAGAGTGTATTTGGATGG+GGG + chr1_1:61657384-61657403 Msa0033840:intron 40.0%
! CAATGTCGTTTCGGTTGTAT+CGG - chr1_1:61658146-61658165 None:intergenic 40.0%
! CAACCGAAACGACATTGATT+TGG + chr1_1:61658149-61658168 Msa0033840:intron 40.0%
!! ACATGTGGTTTGGTTTGGTT+CGG - chr1_1:61658199-61658218 None:intergenic 40.0%
!! TCATTTTGGGGATACTACAC+AGG + chr1_1:61658298-61658317 Msa0033840:intron 40.0%
!! CATTTTGGGGATACTACACA+GGG + chr1_1:61658299-61658318 Msa0033840:intron 40.0%
!! ACACTTCGTATTTTTGTCGC+AGG + chr1_1:61658572-61658591 Msa0033840:intron 40.0%
!! CACTTCGTATTTTTGTCGCA+GGG + chr1_1:61658573-61658592 Msa0033840:intron 40.0%
TTGTCATTGCCATTGCATCT+GGG - chr1_1:61658830-61658849 None:intergenic 40.0%
ATTGTCATTGCCATTGCATC+TGG - chr1_1:61658831-61658850 None:intergenic 40.0%
CTCTCTACTGCAATTTAGAC+GGG + chr1_1:61659073-61659092 Msa0033840:intron 40.0%
GGCAAGTCAATAAAATCACG+AGG - chr1_1:61659131-61659150 None:intergenic 40.0%
ATTAGCCCGTCTAAATTGCA+AGG - chr1_1:61659081-61659100 None:intergenic 40.0%
GGCAAGTCAATAAAATCACG+AGG - chr1_1:61659131-61659150 None:intergenic 40.0%
ATCGGTATCCATATCGTATC+GGG + chr1_1:61659272-61659291 Msa0033840:intron 40.0%
GTATGTTACCCGATACGATA+TGG - chr1_1:61659283-61659302 None:intergenic 40.0%
TTACGGCTACTTGATTGGAT+GGG - chr1_1:61659401-61659420 None:intergenic 40.0%
AGCCAATTGCACACAGATTA+AGG - chr1_1:61659714-61659733 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+TGG + chr1_1:61659739-61659758 Msa0033840:intron 40.0%
!! AAATAAAGGGCATCCATTCC+GGG - chr1_1:61660281-61660300 None:intergenic 40.0%
!! GAAATAAAGGGCATCCATTC+CGG - chr1_1:61660282-61660301 None:intergenic 40.0%
! GCCCTTTATTTCCACTGTTA+AGG + chr1_1:61660290-61660309 Msa0033840:intron 40.0%
TCTGACAGGAAAAGAGTCAA+AGG - chr1_1:61660436-61660455 None:intergenic 40.0%
GTCTGGCAATATCTGCAAAA+TGG - chr1_1:61660739-61660758 None:intergenic 40.0%
GCAATGGTCCTTGAAGTATA+AGG + chr1_1:61660773-61660792 Msa0033840:CDS 40.0%
!! CGCCAATGGATTTTCTGATT+TGG - chr1_1:61660943-61660962 None:intergenic 40.0%
CATTTCCGAAACATGCCATT+AGG + chr1_1:61661415-61661434 Msa0033840:intron 40.0%
CGCTACTGAATTAGTAAGGA+AGG - chr1_1:61661539-61661558 None:intergenic 40.0%
CCTACGCTACTGAATTAGTA+AGG - chr1_1:61661543-61661562 None:intergenic 40.0%
CCTTACTAATTCAGTAGCGT+AGG + chr1_1:61661540-61661559 Msa0033840:intron 40.0%
AGCGTAGGTCACTTAAAAGA+AGG + chr1_1:61661555-61661574 Msa0033840:intron 40.0%
ACTGCTATAAGAACTGGTCA+AGG - chr1_1:61661653-61661672 None:intergenic 40.0%
AGTCCCACATTGCCTATAAA+TGG + chr1_1:61661737-61661756 Msa0033840:intron 40.0%
! ACCCAAAACCTTAAGGCATT+AGG - chr1_1:61661800-61661819 None:intergenic 40.0%
!!! TAATGCCTTAAGGTTTTGGG+TGG + chr1_1:61661799-61661818 Msa0033840:intron 40.0%
GAGTCTGACATGATATGAGT+AGG + chr1_1:61661940-61661959 Msa0033840:intron 40.0%
AGAAGTTGAAATAGTCCCTG+TGG - chr1_1:61662031-61662050 None:intergenic 40.0%
GAAATGATAGAGAGGTGACT+AGG + chr1_1:61662161-61662180 Msa0033840:intron 40.0%
AAAAGAGGGCTTAGGATCAA+GGG - chr1_1:61662286-61662305 None:intergenic 40.0%
TAGGTTCACCTAAGGGATTA+GGG - chr1_1:61662321-61662340 None:intergenic 40.0%
ATAGGTTCACCTAAGGGATT+AGG - chr1_1:61662322-61662341 None:intergenic 40.0%
ACAAAGGATCTAGCTACTCA+TGG + chr1_1:61662614-61662633 Msa0033840:intron 40.0%
!! GAACCGGATTTGAGTTTTGA+TGG + chr1_1:61662687-61662706 Msa0033840:intron 40.0%
!!! AAGAAACTGACTTTTGGAGC+TGG - chr1_1:61662736-61662755 None:intergenic 40.0%
TCTCCAAAATTTCGAACCCT+TGG + chr1_1:61662756-61662775 Msa0033840:intron 40.0%
! AAGCCAAGGGTTCGAAATTT+TGG - chr1_1:61662762-61662781 None:intergenic 40.0%
CATAGAAACCTGATGACACT+AGG - chr1_1:61663116-61663135 None:intergenic 40.0%
GGTTGTGTTATCTTTGTGCT+TGG + chr1_1:61663283-61663302 Msa0033840:intron 40.0%
TGTTATCTTTGTGCTTGGAC+TGG + chr1_1:61663288-61663307 Msa0033840:intron 40.0%
GGCTTAAACAAGATACAGCT+AGG - chr1_1:61663378-61663397 None:intergenic 40.0%
!! GAAATGTGTTTTCTAGCCAC+CGG - chr1_1:61663403-61663422 None:intergenic 40.0%
GGTGGCTAGAAAACACATTT+CGG + chr1_1:61663402-61663421 Msa0033840:intron 40.0%
ACTTCTACAAGGCATGAAGA+AGG - chr1_1:61663671-61663690 None:intergenic 40.0%
CTTCATGCCTTGTAGAAGTA+AGG + chr1_1:61663672-61663691 Msa0033840:intron 40.0%
AACTAGCTGCAAGTTCCTAT+TGG + chr1_1:61663857-61663876 Msa0033840:intron 40.0%
ACTAGCTGCAAGTTCCTATT+GGG + chr1_1:61663858-61663877 Msa0033840:intron 40.0%
TTCCTTAGTGTGCATACATG+TGG - chr1_1:61663933-61663952 None:intergenic 40.0%
GCTTGACTAAAAGCTGAATG+GGG - chr1_1:61664073-61664092 None:intergenic 40.0%
GTGCTTGACTAAAAGCTGAA+TGG - chr1_1:61664075-61664094 None:intergenic 40.0%
GAGACTGTCAGCTGTAATAA+TGG - chr1_1:61664123-61664142 None:intergenic 40.0%
!! GAACGAAGGGAGTATTGATT+TGG - chr1_1:61664400-61664419 None:intergenic 40.0%
GGAGAGGAGGAAAATACAAA+GGG - chr1_1:61664896-61664915 None:intergenic 40.0%
TGGAGAGGAGGAAAATACAA+AGG - chr1_1:61664897-61664916 None:intergenic 40.0%
! TTGTATTTTCCTCCTCTCCA+TGG + chr1_1:61664897-61664916 Msa0033840:intron 40.0%
AAAATGGAGCCCTGAAAATC+AGG - chr1_1:61665017-61665036 None:intergenic 40.0%
!! TTATCATGCCAGTGTTGGTT+AGG + chr1_1:61665104-61665123 Msa0033840:three_prime_UTR 40.0%
TAAATCCACCTAACCAACAC+TGG - chr1_1:61665115-61665134 None:intergenic 40.0%
TTAATTCCTCACGGCTCTTA+TGG + chr1_1:61665150-61665169 Msa0033840:three_prime_UTR 40.0%
GAAATACTCCAACGTCTTGA+AGG - chr1_1:61665293-61665312 None:intergenic 40.0%
!! GTTTGAGTTGGCTCGATTTG+AGG - chr1_1:61657040-61657059 None:intergenic 45.0%
TCTGCGGTTTCAGTTTGAGT+TGG - chr1_1:61657052-61657071 None:intergenic 45.0%
AAACCGCAGAAAACCGCATT+TGG + chr1_1:61657062-61657081 Msa0033840:intron 45.0%
GCAGAAAACCGCATTTGGTT+TGG + chr1_1:61657067-61657086 Msa0033840:intron 45.0%
!! GCATTGTTTGGTTCGGTTTG+CGG + chr1_1:61657119-61657138 Msa0033840:intron 45.0%
!! TGTTGCGGTTTGGTTTGGTT+TGG - chr1_1:61657160-61657179 None:intergenic 45.0%
! TTGGATGGGGGAATGTTTTG+AGG + chr1_1:61657396-61657415 Msa0033840:intron 45.0%
!! TTCGGTTGTATCGGTTGATG+CGG - chr1_1:61658137-61658156 None:intergenic 45.0%
GCAATGGCAATGACAATGTG+TGG + chr1_1:61658834-61658853 Msa0033840:intron 45.0%
AATGTGTGGTCCAGATGCAA+TGG + chr1_1:61658848-61658867 Msa0033840:intron 45.0%
GAAAATTAGGGGTGGCACTT+TGG - chr1_1:61658893-61658912 None:intergenic 45.0%
AAAGCTCAACCCATTTGGGT+TGG + chr1_1:61658991-61659010 Msa0033840:intron 45.0%
AGTCCTAAGCCAATACCACT+AGG - chr1_1:61659017-61659036 None:intergenic 45.0%
!! AGTGGTATTGGCTTAGGACT+TGG + chr1_1:61659017-61659036 Msa0033840:intron 45.0%
CCGTCTAAATTGCAAGGTGT+GGG - chr1_1:61659152-61659171 None:intergenic 45.0%
CCCACACCTTGCAATTTAGA+CGG + chr1_1:61659149-61659168 Msa0033840:intron 45.0%
CCACACCTTGCAATTTAGAC+GGG + chr1_1:61659150-61659169 Msa0033840:intron 45.0%
! ACGGGCTAATTCACCTTAGA+CGG + chr1_1:61659168-61659187 Msa0033840:intron 45.0%
GCACTAAATTAGCCCGTCTA+AGG - chr1_1:61659088-61659107 None:intergenic 45.0%
ATGTTGCATAGGTGCGATAC+GGG - chr1_1:61659305-61659324 None:intergenic 45.0%
GATGTTGCATAGGTGCGATA+CGG - chr1_1:61659306-61659325 None:intergenic 45.0%
GTTACGGCTACTTGATTGGA+TGG - chr1_1:61659402-61659421 None:intergenic 45.0%
TTATGATAGACCGTGGCACT+GGG - chr1_1:61659806-61659825 None:intergenic 45.0%
TTTATGATAGACCGTGGCAC+TGG - chr1_1:61659807-61659826 None:intergenic 45.0%
!! TTGGCTTGCTCGTAATATGC+AGG + chr1_1:61660821-61660840 Msa0033840:intron 45.0%
GAAAATCCATTGGCGATCTC+TGG + chr1_1:61660948-61660967 Msa0033840:CDS 45.0%
TTCCCAACAGGTAACTGACA+AGG + chr1_1:61660977-61660996 Msa0033840:intron 45.0%
TCCCAACAGGTAACTGACAA+GGG + chr1_1:61660978-61660997 Msa0033840:intron 45.0%
AACTACAGTAATGCTTGGGC+AGG - chr1_1:61661163-61661182 None:intergenic 45.0%
AGGTTAGCAAGAGAAGAGAG+TGG + chr1_1:61661303-61661322 Msa0033840:intron 45.0%
CATCTCCACCCAAAACCTTA+AGG - chr1_1:61661807-61661826 None:intergenic 45.0%
GTGCATTGAGGCAATTGGTT+TGG + chr1_1:61662095-61662114 Msa0033840:intron 45.0%
GAAAAGAGGGCTTAGGATCA+AGG - chr1_1:61662287-61662306 None:intergenic 45.0%
! TCTAACGGACAATCTAGGGA+TGG - chr1_1:61662398-61662417 None:intergenic 45.0%
GCTGGGATCTGCAATTAATG+AGG - chr1_1:61662863-61662882 None:intergenic 45.0%
ATTAATTGCAGATCCCAGCC+TGG + chr1_1:61662864-61662883 Msa0033840:intron 45.0%
!! TAGCATCGGGCTACGATTTT+GGG - chr1_1:61662966-61662985 None:intergenic 45.0%
!! ATAGCATCGGGCTACGATTT+TGG - chr1_1:61662967-61662986 None:intergenic 45.0%
! ATCTTGTTTAAGCCATCCGG+TGG + chr1_1:61663384-61663403 Msa0033840:intron 45.0%
TCTGATTTCTCATGTGGCAG+AGG + chr1_1:61663620-61663639 Msa0033840:intron 45.0%
GCTGTGCGATTCTATCCAAA+AGG + chr1_1:61663644-61663663 Msa0033840:intron 45.0%
! AGGCATGAAGAAGGACCTTT+TGG - chr1_1:61663662-61663681 None:intergenic 45.0%
CACCACATGTATGCACACTA+AGG + chr1_1:61663928-61663947 Msa0033840:intron 45.0%
TAAAAGCTGAATGGGGACAG+GGG - chr1_1:61664066-61664085 None:intergenic 45.0%
CTAAAAGCTGAATGGGGACA+GGG - chr1_1:61664067-61664086 None:intergenic 45.0%
ACTAAAAGCTGAATGGGGAC+AGG - chr1_1:61664068-61664087 None:intergenic 45.0%
ACAGCTGACAGTCTCATATG+AGG + chr1_1:61664128-61664147 Msa0033840:intron 45.0%
!!! TCCTCAACTTTTAGCTCCAG+TGG + chr1_1:61664152-61664171 Msa0033840:CDS 45.0%
!!! ACTTTTAGCTCCAGTGGCAT+CGG + chr1_1:61664158-61664177 Msa0033840:CDS 45.0%
CAGATTATACCATGGAGAGG+AGG - chr1_1:61664909-61664928 None:intergenic 45.0%
CTGCAGATTATACCATGGAG+AGG - chr1_1:61664912-61664931 None:intergenic 45.0%
CTCTCCATGGTATAATCTGC+AGG + chr1_1:61664910-61664929 Msa0033840:intron 45.0%
AGTGCCTGCAGATTATACCA+TGG - chr1_1:61664917-61664936 None:intergenic 45.0%
GCACTGCAACCATTTCTTGA+AGG + chr1_1:61664932-61664951 Msa0033840:CDS 45.0%
TACGGTTATCATGCCAGTGT+TGG + chr1_1:61665099-61665118 Msa0033840:three_prime_UTR 45.0%
TGATTTCCATAAGAGCCGTG+AGG - chr1_1:61665159-61665178 None:intergenic 45.0%
CACGGCTCTTATGGAAATCA+TGG + chr1_1:61665159-61665178 Msa0033840:three_prime_UTR 45.0%
! GTATTTTCAGCAGTGCCACA+AGG - chr1_1:61665246-61665265 None:intergenic 45.0%
TAAGCTACCCTTCAAGACGT+TGG + chr1_1:61665282-61665301 Msa0033840:three_prime_UTR 45.0%
TGAGATGGTTTGACAAAGGC+AGG - chr1_1:61665374-61665393 None:intergenic 45.0%
TGCCTTTGTCAAACCATCTC+AGG + chr1_1:61665373-61665392 Msa0033840:three_prime_UTR 45.0%
GTCCTGAGATGGTTTGACAA+AGG - chr1_1:61665378-61665397 None:intergenic 45.0%
GGTATGGGCACATGACTTAT+AGG - chr1_1:61665410-61665429 None:intergenic 45.0%
TGTTAGCACCACGGTTCGTA+GGG - chr1_1:61656902-61656921 None:intergenic 50.0%
!! GCGGTTTGGTTTGGTTTGGT+TGG - chr1_1:61657156-61657175 None:intergenic 50.0%
!! TCGGTTGTATCGGTTGATGC+GGG - chr1_1:61658136-61658155 None:intergenic 50.0%
! AGAGTGTTTGTGGTGCGGTT+TGG - chr1_1:61658266-61658285 None:intergenic 50.0%
!! GCAGGGCGCTGAAAATACAT+GGG + chr1_1:61658590-61658609 Msa0033840:intron 50.0%
ACCACTAGGCCAACCCAAAT+GGG - chr1_1:61659003-61659022 None:intergenic 50.0%
TACCACTAGGCCAACCCAAA+TGG - chr1_1:61659004-61659023 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG + chr1_1:61659005-61659024 Msa0033840:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+AGG + chr1_1:61659011-61659030 Msa0033840:intron 50.0%
GAATCGAACCTGAGACCTTG+AGG - chr1_1:61659054-61659073 None:intergenic 50.0%
CCCGTCTAAATTGCAAGGTG+TGG - chr1_1:61659153-61659172 None:intergenic 50.0%
CGGGCTAATTCACCTTAGAC+GGG + chr1_1:61659169-61659188 Msa0033840:intron 50.0%
TTCTGATCGTGAAGCCATCC+CGG + chr1_1:61660260-61660279 Msa0033840:intron 50.0%
GAGCAAGCACACCTTAACAG+TGG - chr1_1:61660304-61660323 None:intergenic 50.0%
ACAAACCTGACCTGTCGCAA+TGG + chr1_1:61660757-61660776 Msa0033840:CDS 50.0%
ACTTCAAGGACCATTGCGAC+AGG - chr1_1:61660770-61660789 None:intergenic 50.0%
!! ATTTGGAGTGGGCTGCAAGA+AGG - chr1_1:61660926-61660945 None:intergenic 50.0%
ATCCATTGGCGATCTCTGGA+TGG + chr1_1:61660952-61660971 Msa0033840:CDS 50.0%
GCCCTTGTCAGTTACCTGTT+GGG - chr1_1:61660982-61661001 None:intergenic 50.0%
TGCCCTTGTCAGTTACCTGT+TGG - chr1_1:61660983-61661002 None:intergenic 50.0%
! TCTTGTGGTCCTGGAGCATT+TGG + chr1_1:61661840-61661859 Msa0033840:intron 50.0%
! CTTGTGGTCCTGGAGCATTT+GGG + chr1_1:61661841-61661860 Msa0033840:intron 50.0%
CATAATGTTGGGGAGTCCAG+GGG - chr1_1:61661886-61661905 None:intergenic 50.0%
GCATAATGTTGGGGAGTCCA+GGG - chr1_1:61661887-61661906 None:intergenic 50.0%
! GTAAAATGGGGGGTGCATTG+AGG + chr1_1:61662083-61662102 Msa0033840:intron 50.0%
!! TCTAGGGATGGAGCGTTGTT+AGG - chr1_1:61662386-61662405 None:intergenic 50.0%
TGGAGAACTGGAGAGAAGGT+TGG - chr1_1:61662716-61662735 None:intergenic 50.0%
!!! GACTTTTGGAGCTGGAGAAC+TGG - chr1_1:61662728-61662747 None:intergenic 50.0%
!! TTTTAGAGATGCGCCAGGCT+GGG - chr1_1:61662880-61662899 None:intergenic 50.0%
!! ATTTTAGAGATGCGCCAGGC+TGG - chr1_1:61662881-61662900 None:intergenic 50.0%
!! GCCTGGCGCATCTCTAAAAT+CGG + chr1_1:61662881-61662900 Msa0033840:intron 50.0%
!! TCCGATTTTAGAGATGCGCC+AGG - chr1_1:61662885-61662904 None:intergenic 50.0%
CGTAGCCCGATGCTATAGAT+CGG + chr1_1:61662971-61662990 Msa0033840:intron 50.0%
GTGCTCCGATCTATAGCATC+GGG - chr1_1:61662979-61662998 None:intergenic 50.0%
CGTGCTCCGATCTATAGCAT+CGG - chr1_1:61662980-61662999 None:intergenic 50.0%
!! TGTGTTTTCTAGCCACCGGA+TGG - chr1_1:61663399-61663418 None:intergenic 50.0%
AGGCAATTAGGTGGCCCAAT+AGG - chr1_1:61663875-61663894 None:intergenic 50.0%
GATAGGGACAGGCAATTAGG+TGG - chr1_1:61663884-61663903 None:intergenic 50.0%
CCTGATAGGGACAGGCAATT+AGG - chr1_1:61663887-61663906 None:intergenic 50.0%
CCTAATTGCCTGTCCCTATC+AGG + chr1_1:61663884-61663903 Msa0033840:intron 50.0%
! AGTCATGCACTGGCCTGATA+GGG - chr1_1:61663900-61663919 None:intergenic 50.0%
! TAGTCATGCACTGGCCTGAT+AGG - chr1_1:61663901-61663920 None:intergenic 50.0%
TATCAGGCCAGTGCATGACT+AGG + chr1_1:61663900-61663919 Msa0033840:intron 50.0%
GCCACTGGAGCTAAAAGTTG+AGG - chr1_1:61664156-61664175 None:intergenic 50.0%
! AGAGTACTTACCGATGCCAC+TGG - chr1_1:61664171-61664190 None:intergenic 50.0%
!! AGTGGCATCGGTAAGTACTC+TGG + chr1_1:61664170-61664189 Msa0033840:intron 50.0%
!! TCATGCCAGTGTTGGTTAGG+TGG + chr1_1:61665107-61665126 Msa0033840:three_prime_UTR 50.0%
TTCAGCAGTGCCACAAGGTT+GGG - chr1_1:61665241-61665260 None:intergenic 50.0%
TTTCAGCAGTGCCACAAGGT+TGG - chr1_1:61665242-61665261 None:intergenic 50.0%
GGTGCTTCTTAGTCCTGAGA+TGG - chr1_1:61665389-61665408 None:intergenic 50.0%
GTGTTAGCACCACGGTTCGT+AGG - chr1_1:61656903-61656922 None:intergenic 55.0%
!! CGCAGGGCGCTGAAAATACA+TGG + chr1_1:61658589-61658608 Msa0033840:intron 55.0%
GTTGTGTGGCCCAGATGCAA+TGG + chr1_1:61658818-61658837 Msa0033840:intron 55.0%
GTGGTCCAGATGCAATGGCA+CGG + chr1_1:61658853-61658872 Msa0033840:intron 55.0%
! TGTCACCGTGCCATTGCATC+TGG - chr1_1:61658861-61658880 None:intergenic 55.0%
!! ACCCATTTGGGTTGGCCTAG+TGG + chr1_1:61658999-61659018 Msa0033840:intron 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG + chr1_1:61659036-61659055 Msa0033840:intron 55.0%
TCGAACCTGAGACCTTGAGG+AGG - chr1_1:61659051-61659070 None:intergenic 55.0%
GGCTGAAATTCCCAGTGCCA+CGG + chr1_1:61659793-61659812 Msa0033840:intron 55.0%
ATCGTGAAGCCATCCCGGAA+TGG + chr1_1:61660265-61660284 Msa0033840:intron 55.0%
!! AAAGGGCATCCATTCCGGGA+TGG - chr1_1:61660277-61660296 None:intergenic 55.0%
TGCGACAGGTCAGGTTTGTC+TGG - chr1_1:61660756-61660775 None:intergenic 55.0%
AAGGACCATTGCGACAGGTC+AGG - chr1_1:61660765-61660784 None:intergenic 55.0%
GACCATCCAGAGATCGCCAA+TGG - chr1_1:61660957-61660976 None:intergenic 55.0%
CTCTGGATGGTCTTCCCAAC+AGG + chr1_1:61660965-61660984 Msa0033840:CDS 55.0%
TGCAGCATCTCCCTCTCTTG+TGG + chr1_1:61661825-61661844 Msa0033840:intron 55.0%
ATCTCCCTCTCTTGTGGTCC+TGG + chr1_1:61661831-61661850 Msa0033840:intron 55.0%
TGCTCCAGGACCACAAGAGA+GGG - chr1_1:61661838-61661857 None:intergenic 55.0%
ATGCTCCAGGACCACAAGAG+AGG - chr1_1:61661839-61661858 None:intergenic 55.0%
ACAACAGGCCCAAATGCTCC+AGG - chr1_1:61661852-61661871 None:intergenic 55.0%
GGCATAATGTTGGGGAGTCC+AGG - chr1_1:61661888-61661907 None:intergenic 55.0%
GAGCTGGAGAACTGGAGAGA+AGG - chr1_1:61662720-61662739 None:intergenic 55.0%
CCAGCTGCACTCTAAGCCAA+GGG - chr1_1:61662775-61662794 None:intergenic 55.0%
CCTTGGCTTAGAGTGCAGCT+GGG + chr1_1:61662773-61662792 Msa0033840:intron 55.0%
TGTGCCACCTAGTCATGCAC+TGG - chr1_1:61663910-61663929 None:intergenic 55.0%
AACCCGGAATCCCAACCTTG+TGG + chr1_1:61665228-61665247 Msa0033840:three_prime_UTR 55.0%
TGCCACAAGGTTGGGATTCC+GGG - chr1_1:61665233-61665252 None:intergenic 55.0%
GTGCCACAAGGTTGGGATTC+CGG - chr1_1:61665234-61665253 None:intergenic 55.0%
GACCTCTTCCCTACGAACCG+TGG + chr1_1:61656891-61656910 Msa0033840:intron 60.0%
CACCACGGTTCGTAGGGAAG+AGG - chr1_1:61656896-61656915 None:intergenic 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG + chr1_1:61659043-61659062 Msa0033840:intron 60.0%
GGGGTCACGGGAGAAACAAC+AGG - chr1_1:61661867-61661886 None:intergenic 60.0%
!! GTTGTTTCTCCCGTGACCCC+TGG + chr1_1:61661867-61661886 Msa0033840:intron 60.0%
! GGGGGGTGCATTGAGGCAAT+TGG + chr1_1:61662090-61662109 Msa0033840:intron 60.0%
CCCTTGGCTTAGAGTGCAGC+TGG + chr1_1:61662772-61662791 Msa0033840:intron 60.0%
CCCAGCTGCACTCTAAGCCA+AGG - chr1_1:61662776-61662795 None:intergenic 60.0%
! TGCACTGGCCTGATAGGGAC+AGG - chr1_1:61663895-61663914 None:intergenic 60.0%
CAGGCCAGTGCATGACTAGG+TGG + chr1_1:61663903-61663922 Msa0033840:intron 60.0%
GGGGACAGGGGAGGAGAAAA+TGG - chr1_1:61664054-61664073 None:intergenic 60.0%
AAGCTGAATGGGGACAGGGG+AGG - chr1_1:61664063-61664082 None:intergenic 60.0%
TTGGGGAGTCCAGGGGTCAC+GGG - chr1_1:61661879-61661898 None:intergenic 65.0%
GTTGGGGAGTCCAGGGGTCA+CGG - chr1_1:61661880-61661899 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 61656620 61665488 61656620 ID=Msa0033840;Name=Msa0033840
chr1_1 mRNA 61656620 61665488 61656620 ID=Msa0033840-mRNA-1;Parent=Msa0033840;Name=Msa0033840-mRNA-1;_AED=0.23;_eAED=0.29;_QI=0|0.25|0.2|0.8|1|1|5|479|89
chr1_1 exon 61656620 61656625 61656620 ID=Msa0033840-mRNA-1:exon:19307;Parent=Msa0033840-mRNA-1
chr1_1 exon 61660747 61660831 61660747 ID=Msa0033840-mRNA-1:exon:19308;Parent=Msa0033840-mRNA-1
chr1_1 exon 61660934 61660986 61660934 ID=Msa0033840-mRNA-1:exon:19309;Parent=Msa0033840-mRNA-1
chr1_1 exon 61664132 61664179 61664132 ID=Msa0033840-mRNA-1:exon:19310;Parent=Msa0033840-mRNA-1
chr1_1 exon 61664932 61665488 61664932 ID=Msa0033840-mRNA-1:exon:19311;Parent=Msa0033840-mRNA-1
chr1_1 CDS 61656620 61656625 61656620 ID=Msa0033840-mRNA-1:cds;Parent=Msa0033840-mRNA-1
chr1_1 CDS 61660747 61660831 61660747 ID=Msa0033840-mRNA-1:cds;Parent=Msa0033840-mRNA-1
chr1_1 CDS 61660934 61660986 61660934 ID=Msa0033840-mRNA-1:cds;Parent=Msa0033840-mRNA-1
chr1_1 CDS 61664132 61664179 61664132 ID=Msa0033840-mRNA-1:cds;Parent=Msa0033840-mRNA-1
chr1_1 CDS 61664932 61665009 61664932 ID=Msa0033840-mRNA-1:cds;Parent=Msa0033840-mRNA-1
chr1_1 three_prime_UTR 61665010 61665488 61665010 ID=Msa0033840-mRNA-1:three_prime_utr;Parent=Msa0033840-mRNA-1
Gene Sequence

>Msa0033840

ATGAAGATATTGCCAGACAAACCTGACCTGTCGCAATGGTCCTTGAAGTATAAGGCATTTGGTCAGAATATTGAGTTCTCTTGGCTTGCTCCCCACTCCAAATCAGAAAATCCATTGGCGATCTCTGGATGGTCTTCCCAACAGCTGACAGTCTCATATGAGGTTCCTCAACTTTTAGCTCCAGTGGCATCGGCACTGCAACCATTTCTTGAAGGTTTACTTAAACGTGGTTTGGAAAGATTTGCCACGTTTGCAAAAAGCTACAAATGA

Protein sequence

>Msa0033840

MKILPDKPDLSQWSLKYKAFGQNIEFSWLAPHSKSENPLAISGWSSQQLTVSYEVPQLLAPVASALQPFLEGLLKRGLERFATFAKSYK*