AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0641130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641130 MtrunA17_Chr4g0025621 97.778 360 8 0 1 360 1 360 0.0 716
Msa0641130 MtrunA17_Chr4g0025661 67.697 356 113 2 3 357 6 360 0.0 507
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641130 AT5G22140.1 64.972 354 123 1 4 357 12 364 1.50e-170 479
Msa0641130 AT3G44190.1 62.994 354 130 1 4 357 12 364 6.55e-169 476
Msa0641130 AT3G44190.2 63.344 311 113 1 47 357 1 310 1.50e-146 417
Msa0641130 AT5G22140.2 64.309 311 110 1 47 357 1 310 1.60e-146 417

Find 71 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTCCATGGGCAAGTTTA+AGG 0.156955 4_3:-40921988 Msa0641130:CDS
TATCAATAGTTTCAGATTCT+TGG 0.196415 4_3:+40920318 None:intergenic
AAGTCTTTCGGTCCTTGTTT+TGG 0.248727 4_3:+40921784 None:intergenic
AATGTCTTTCTTGAAGCTTT+TGG 0.265463 4_3:+40921002 None:intergenic
AAATACTACTATAGGTATAT+TGG 0.304020 4_3:+40919985 None:intergenic
ACTCCTTCACAAATGAAAAT+AGG 0.306830 4_3:-40920923 Msa0641130:CDS
CTTCAAGAAAGACATTAAAA+TGG 0.321115 4_3:-40920995 Msa0641130:CDS
ACAATTGTTGGAAGGCTTCC+TGG 0.324524 4_3:-40920190 Msa0641130:CDS
TTCAGATTCAGTTATGTTGA+TGG 0.355713 4_3:+40921880 None:intergenic
GGAGCGAAAGAACGTAAATT+AGG 0.359944 4_3:-40920289 Msa0641130:CDS
TCAAGATTGCTAGAATATAT+TGG 0.361205 4_3:-40921026 Msa0641130:CDS
CCAAGTGAAACAATAGATAT+TGG 0.377879 4_3:+40920247 None:intergenic
TTTCCTTTCATGACAATTGT+TGG 0.378561 4_3:-40920202 Msa0641130:CDS
GATTCCATGGGCAAGTTTAA+GGG 0.378904 4_3:-40921987 Msa0641130:CDS
GAAAAGAAAGTTGTGATTAT+AGG 0.392457 4_3:-40922922 Msa0641130:CDS
ATTGCTTACCTCCTTTGTAT+TGG 0.393585 4_3:+40921759 None:intergenic
GATTATCTTGTTATCGCAAC+TGG 0.394119 4_3:-40921824 Msa0641130:CDS
TGATAAACAAATACTACTAT+AGG 0.398204 4_3:+40919977 None:intergenic
ATTATAGGAGGTGGTGTTGC+TGG 0.401428 4_3:-40922907 Msa0641130:CDS
TTTGTATTGGTCAAGTCTTT+CGG 0.415825 4_3:+40921772 None:intergenic
AGTCAGGAGATTTGTTTGTT+GGG 0.428035 4_3:-40920159 Msa0641130:CDS
AAGTCAGGAGATTTGTTTGT+TGG 0.437062 4_3:-40920160 Msa0641130:CDS
GGGAAAACAAGAAAGGGATT+AGG 0.446814 4_3:-40920139 Msa0641130:CDS
GATGAGTACTTGAGAGTGAA+GGG 0.449684 4_3:-40920765 Msa0641130:CDS
GTTTGTTGGGAAAACAAGAA+AGG 0.452444 4_3:-40920146 Msa0641130:CDS
AATCTGAAACTATTGATAGA+AGG 0.453316 4_3:-40920313 Msa0641130:CDS
TGCGATAACAAGATAATCAT+AGG 0.455029 4_3:+40921829 None:intergenic
TTTGTTGGGAAAACAAGAAA+GGG 0.460435 4_3:-40920145 Msa0641130:CDS
CCAATATCTATTGTTTCACT+TGG 0.467044 4_3:-40920247 Msa0641130:CDS
CTTCCTGGTATGATCAAGTC+AGG 0.474220 4_3:-40920175 Msa0641130:CDS
CATAGAGAATATTTCACAAA+AGG 0.477184 4_3:-40921923 Msa0641130:CDS
CATTAAAATGGCTTCAATCA+AGG 0.485208 4_3:-40920983 Msa0641130:CDS
AAAGTGACTATAGTGCATAA+AGG 0.487929 4_3:-40921050 Msa0641130:CDS
CTCTCAAGTACTCATCAACT+TGG 0.488733 4_3:+40920772 None:intergenic
CTTTCATGACAATTGTTGGA+AGG 0.497870 4_3:-40920198 Msa0641130:CDS
ATAGGTATATTGGAATTCAA+TGG 0.504093 4_3:+40919995 None:intergenic
ATTGTCGGTGGAGGTCCAAC+TGG 0.506007 4_3:-40921116 Msa0641130:CDS
GATTACTGTCCTTTCTGCAA+AGG 0.514545 4_3:+40921949 None:intergenic
TGTTATCGCAACTGGTCATA+CGG 0.523541 4_3:-40921816 Msa0641130:CDS
TGATGAGTACTTGAGAGTGA+AGG 0.525012 4_3:-40920766 Msa0641130:CDS
AGGACATATCAAACTTCAGT+TGG 0.525563 4_3:-40920903 Msa0641130:CDS
GATAATCATAGGCAATTTCA+CGG 0.532473 4_3:+40921840 None:intergenic
ATGGGCAAGTTTAAGGGCAA+TGG 0.538869 4_3:-40921981 Msa0641130:CDS
TCTGAAGTCTTCACTGCTGA+TGG 0.538947 4_3:-40921863 Msa0641130:CDS
GTTTCACTTGGAAGAAAACA+TGG 0.548086 4_3:-40920235 Msa0641130:CDS
TCAAGCCATGCTGTAGCAAG+TGG 0.551155 4_3:+40920837 None:intergenic
CTTCCAACAATTGTCATGAA+AGG 0.551683 4_3:+40920199 None:intergenic
GGCAAGTTTAAGGGCAATGG+TGG 0.562939 4_3:-40921978 Msa0641130:CDS
TGGAGCCATCCTTTGCAGAA+AGG 0.564597 4_3:-40921958 Msa0641130:CDS
ACTGTCCTTTCTGCAAAGGA+TGG 0.565164 4_3:+40921953 None:intergenic
AAAGTTGTGATTATAGGAGG+TGG 0.565821 4_3:-40922916 Msa0641130:CDS
AAAGATGATTTGGATGGTCA+TGG 0.566723 4_3:-40920801 Msa0641130:CDS
AGTGAAACAATAGATATTGG+TGG 0.570389 4_3:+40920250 None:intergenic
AGTACTTGAGAGTGAAGGGA+AGG 0.576975 4_3:-40920761 Msa0641130:CDS
TCTCCTGACTTGATCATACC+AGG 0.577444 4_3:+40920172 None:intergenic
AAGAAAGTTGTGATTATAGG+AGG 0.578925 4_3:-40922919 Msa0641130:CDS
GCTGCTAGCTCGACACCAGT+TGG 0.587572 4_3:+40921101 None:intergenic
ATTGCCCTTAAACTTGCCCA+TGG 0.588671 4_3:+40921983 None:intergenic
TTTCTGAAAGATGATTTGGA+TGG 0.601708 4_3:-40920807 Msa0641130:CDS
CTGAAACTATTGATAGAAGG+AGG 0.602874 4_3:-40920310 Msa0641130:CDS
CGGAATCTATCCCCAAAACA+AGG 0.611323 4_3:-40921796 Msa0641130:CDS
AACATACACAAATAATAACT+AGG 0.612632 4_3:+40920050 None:intergenic
ATGATTTGGATGGTCATGGA+AGG 0.615413 4_3:-40920797 Msa0641130:CDS
ACGTAAATTAGGTACTTACA+AGG 0.616980 4_3:-40920278 Msa0641130:CDS
CGAGCTAGCAGCAGAGATTG+CGG 0.623893 4_3:-40921090 Msa0641130:CDS
GGAAACCACTTGCTACAGCA+TGG 0.653025 4_3:-40920842 Msa0641130:CDS
GAAAGACTTGACCAATACAA+AGG 0.653500 4_3:-40921770 Msa0641130:CDS
TGATGGCACTTGATATAACA+AGG 0.655923 4_3:+40921897 None:intergenic
AAACAAGGAGTGTATGCACA+AGG 0.668753 4_3:-40920358 Msa0641130:CDS
AGACTTGACCAATACAAAGG+AGG 0.681103 4_3:-40921767 Msa0641130:intron
ATGTTACAGGAAATAAAACA+AGG 0.698106 4_3:-40920373 Msa0641130:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACAAAGATAAAATAAAAA+TGG - chr4_3:40919990-40920009 Msa0641130:three_prime_UTR 10.0%
!!! TCATAATATAAATTTTTTAG+AGG + chr4_3:40920745-40920764 None:intergenic 10.0%
!!! AATTAAGATTTTTTAACATT+AGG + chr4_3:40922831-40922850 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAGAGCA+TGG + chr4_3:40920148-40920167 None:intergenic 15.0%
!!! TGTGTTAAATTTAATTTGAA+AGG - chr4_3:40920208-40920227 Msa0641130:CDS 15.0%
!! TTTATTATTGTAGTAAAATG+TGG - chr4_3:40920685-40920704 Msa0641130:intron 15.0%
!! AAAAAATCTGTATTGAAATA+TGG + chr4_3:40921559-40921578 None:intergenic 15.0%
!!! GAATTTCATATATGTTTTAT+TGG + chr4_3:40922252-40922271 None:intergenic 15.0%
!!! ATCAAAATTTTGTATTAACT+AGG + chr4_3:40922528-40922547 None:intergenic 15.0%
!! AAAATTGAATTATATGTTAC+AGG - chr4_3:40922551-40922570 Msa0641130:intron 15.0%
!! CAAAGATAAAATAAAAATGG+TGG - chr4_3:40919993-40920012 Msa0641130:three_prime_UTR 20.0%
!! GTAACTAAAATAATATCGAT+TGG - chr4_3:40920230-40920249 Msa0641130:CDS 20.0%
!!! GTTAGTTTAGAATTTTGATA+TGG - chr4_3:40920373-40920392 Msa0641130:intron 20.0%
!! AATTCTAGCAATTAATAGTA+TGG + chr4_3:40921467-40921486 None:intergenic 20.0%
!! TACTATTAATTGCTAGAATT+TGG - chr4_3:40921467-40921486 Msa0641130:intron 20.0%
!!! ATACACATTTTCTATGTATA+GGG - chr4_3:40922074-40922093 Msa0641130:intron 20.0%
!! AACATACACAAATAATAACT+AGG + chr4_3:40922890-40922909 None:intergenic 20.0%
!! AAATACTACTATAGGTATAT+TGG + chr4_3:40922955-40922974 None:intergenic 20.0%
!! TGATAAACAAATACTACTAT+AGG + chr4_3:40922963-40922982 None:intergenic 20.0%
! GAAAAGAAAGTTGTGATTAT+AGG - chr4_3:40920015-40920034 Msa0641130:three_prime_UTR 25.0%
! TATAGTCTTTCTCTATGAAT+TGG - chr4_3:40920326-40920345 Msa0641130:CDS 25.0%
!!! TTAGAATTTTGATATGGTAC+TGG - chr4_3:40920379-40920398 Msa0641130:intron 25.0%
! CGATCAAACATAAAATTCTA+CGG + chr4_3:40920831-40920850 None:intergenic 25.0%
!! CTTTTGTGAAATATTCTCTA+TGG + chr4_3:40921016-40921035 None:intergenic 25.0%
! CATAGAGAATATTTCACAAA+AGG - chr4_3:40921014-40921033 Msa0641130:CDS 25.0%
! AACTGATCAAATATCAATCA+GGG - chr4_3:40921245-40921264 Msa0641130:intron 25.0%
! TGTGATTTCTTACAATATCA+AGG + chr4_3:40921296-40921315 None:intergenic 25.0%
! TTAAACACATCAATGATTGT+TGG + chr4_3:40921635-40921654 None:intergenic 25.0%
!! ATTGTTGACTATAGATAATC+CGG - chr4_3:40921663-40921682 Msa0641130:intron 25.0%
! TCAAGATTGCTAGAATATAT+TGG - chr4_3:40921911-40921930 Msa0641130:CDS 25.0%
! CTTCAAGAAAGACATTAAAA+TGG - chr4_3:40921942-40921961 Msa0641130:CDS 25.0%
!! GATACACATTTTCTATGTAT+AGG - chr4_3:40922073-40922092 Msa0641130:intron 25.0%
!!! AACTTTTCTGAAAGATGATT+TGG - chr4_3:40922126-40922145 Msa0641130:intron 25.0%
! GTATTAAAACCTTTCACTTT+CGG - chr4_3:40922488-40922507 Msa0641130:intron 25.0%
! ATGTTACAGGAAATAAAACA+AGG - chr4_3:40922564-40922583 Msa0641130:intron 25.0%
! TATCAATAGTTTCAGATTCT+TGG + chr4_3:40922622-40922641 None:intergenic 25.0%
!! AATCTGAAACTATTGATAGA+AGG - chr4_3:40922624-40922643 Msa0641130:intron 25.0%
!! GTTCATTTTGTGTTTTCTTT+CGG - chr4_3:40922913-40922932 Msa0641130:CDS 25.0%
! ATAGGTATATTGGAATTCAA+TGG + chr4_3:40922945-40922964 None:intergenic 25.0%
AAGAAAGTTGTGATTATAGG+AGG - chr4_3:40920018-40920037 Msa0641130:three_prime_UTR 30.0%
!!! GATGTTGTATAGTTTTAGCA+AGG + chr4_3:40920062-40920081 None:intergenic 30.0%
! AGATAAGTAAAGACTGGTTA+AGG + chr4_3:40920285-40920304 None:intergenic 30.0%
! GACTATAGTAATCTAGAGTT+CGG + chr4_3:40920313-40920332 None:intergenic 30.0%
ATGCAGAGTGATTGTTTATT+TGG - chr4_3:40920459-40920478 Msa0641130:intron 30.0%
!!! ATGCTGATGGTTTTAAATTG+AGG - chr4_3:40920633-40920652 Msa0641130:intron 30.0%
! ACGAAACTTTTAGTGTAAAG+TGG - chr4_3:40920880-40920899 Msa0641130:CDS 30.0%
! CGAAACTTTTAGTGTAAAGT+GGG - chr4_3:40920881-40920900 Msa0641130:CDS 30.0%
TAATAAGAGTTGTTGAACAC+AGG - chr4_3:40920913-40920932 Msa0641130:CDS 30.0%
TTCAGATTCAGTTATGTTGA+TGG + chr4_3:40921060-40921079 None:intergenic 30.0%
GATAATCATAGGCAATTTCA+CGG + chr4_3:40921100-40921119 None:intergenic 30.0%
TGCGATAACAAGATAATCAT+AGG + chr4_3:40921111-40921130 None:intergenic 30.0%
! TTTGTATTGGTCAAGTCTTT+CGG + chr4_3:40921168-40921187 None:intergenic 30.0%
CAACTGATCAAATATCAATC+AGG - chr4_3:40921244-40921263 Msa0641130:intron 30.0%
AAACCAAAAAACAACTGCAA+TGG + chr4_3:40921342-40921361 None:intergenic 30.0%
TATAGAGAGTCTTGAAACAA+AGG + chr4_3:40921413-40921432 None:intergenic 30.0%
TCTAGCAATTAATAGTATGG+TGG + chr4_3:40921464-40921483 None:intergenic 30.0%
TGATTGTGTGAGATTATTGA+TGG + chr4_3:40921501-40921520 None:intergenic 30.0%
ATAAAACCGAACTTGAAATC+CGG - chr4_3:40921593-40921612 Msa0641130:intron 30.0%
AATGATTGTTGGATTGAGAT+TGG + chr4_3:40921624-40921643 None:intergenic 30.0%
CACACAACTTGACATAAATT+AGG + chr4_3:40921705-40921724 None:intergenic 30.0%
TAAATTCCATTTGAGTGATG+AGG - chr4_3:40921741-40921760 Msa0641130:intron 30.0%
!!! ACTATAGTCACTTTTTTGTC+AGG + chr4_3:40921881-40921900 None:intergenic 30.0%
AAAGTGACTATAGTGCATAA+AGG - chr4_3:40921887-40921906 Msa0641130:CDS 30.0%
! AATGTCTTTCTTGAAGCTTT+TGG + chr4_3:40921938-40921957 None:intergenic 30.0%
CATTAAAATGGCTTCAATCA+AGG - chr4_3:40921954-40921973 Msa0641130:CDS 30.0%
ACTCCTTCACAAATGAAAAT+AGG - chr4_3:40922014-40922033 Msa0641130:intron 30.0%
! TGTCCTATTTTCATTTGTGA+AGG + chr4_3:40922020-40922039 None:intergenic 30.0%
! TTTCTGAAAGATGATTTGGA+TGG - chr4_3:40922130-40922149 Msa0641130:intron 30.0%
ACGTAAATTAGGTACTTACA+AGG - chr4_3:40922659-40922678 Msa0641130:intron 30.0%
AGTGAAACAATAGATATTGG+TGG + chr4_3:40922690-40922709 None:intergenic 30.0%
CCAAGTGAAACAATAGATAT+TGG + chr4_3:40922693-40922712 None:intergenic 30.0%
CCAATATCTATTGTTTCACT+TGG - chr4_3:40922690-40922709 Msa0641130:intron 30.0%
TTTCCTTTCATGACAATTGT+TGG - chr4_3:40922735-40922754 Msa0641130:intron 30.0%
TTTGTTGGGAAAACAAGAAA+GGG - chr4_3:40922792-40922811 Msa0641130:intron 30.0%
AAAGTTGTGATTATAGGAGG+TGG - chr4_3:40920021-40920040 Msa0641130:three_prime_UTR 35.0%
!! AAGACTGGTTAAGGATGTTT+TGG + chr4_3:40920276-40920295 None:intergenic 35.0%
AGTCTTTCTCTATGAATTGG+AGG - chr4_3:40920329-40920348 Msa0641130:CDS 35.0%
GTCTTTCTCTATGAATTGGA+GGG - chr4_3:40920330-40920349 Msa0641130:CDS 35.0%
CCTGATGTCTATATATACAG+TGG + chr4_3:40920522-40920541 None:intergenic 35.0%
CCACTGTATATATAGACATC+AGG - chr4_3:40920519-40920538 Msa0641130:intron 35.0%
TAAAATCGTGATGTGTGACT+AGG + chr4_3:40920561-40920580 None:intergenic 35.0%
CAATTGCAGCTGCATTATAA+AGG + chr4_3:40920780-40920799 None:intergenic 35.0%
!! TACGGTACCGTTTTAAATTG+CGG + chr4_3:40920813-40920832 None:intergenic 35.0%
!!! AGGAGTATTTTGAGATTCCA+TGG - chr4_3:40920937-40920956 Msa0641130:CDS 35.0%
!!! GGAGTATTTTGAGATTCCAT+GGG - chr4_3:40920938-40920957 Msa0641130:CDS 35.0%
TGATGGCACTTGATATAACA+AGG + chr4_3:40921043-40921062 None:intergenic 35.0%
! GATTATCTTGTTATCGCAAC+TGG - chr4_3:40921113-40921132 Msa0641130:CDS 35.0%
GAAAGACTTGACCAATACAA+AGG - chr4_3:40921167-40921186 Msa0641130:intron 35.0%
ATTGCTTACCTCCTTTGTAT+TGG + chr4_3:40921181-40921200 None:intergenic 35.0%
AGGTAAGCAATGATACTTAG+TGG - chr4_3:40921190-40921209 Msa0641130:intron 35.0%
ATACTTAGTGGTAACTCTCT+AGG - chr4_3:40921202-40921221 Msa0641130:intron 35.0%
! TGTGTGAGATTATTGATGGT+AGG + chr4_3:40921497-40921516 None:intergenic 35.0%
ATTGTTGGATTGAGATTGGA+CGG + chr4_3:40921620-40921639 None:intergenic 35.0%
! AGGCAATTGCAATTTGAAAC+CGG + chr4_3:40921685-40921704 None:intergenic 35.0%
AGAATTCCTCATCACTCAAA+TGG + chr4_3:40921750-40921769 None:intergenic 35.0%
AGGACATATCAAACTTCAGT+TGG - chr4_3:40922034-40922053 Msa0641130:intron 35.0%
! AAAGATGATTTGGATGGTCA+TGG - chr4_3:40922136-40922155 Msa0641130:intron 35.0%
GCGTTATAGCATTGTATCAT+AGG - chr4_3:40922388-40922407 Msa0641130:intron 35.0%
! AACTGATATTTTCCGCTATC+TGG - chr4_3:40922422-40922441 Msa0641130:intron 35.0%
! ACTGATATTTTCCGCTATCT+GGG - chr4_3:40922423-40922442 Msa0641130:intron 35.0%
!!! ACTGTTATTTTCCGCTATCT+GGG + chr4_3:40922470-40922489 None:intergenic 35.0%
!!! TACTGTTATTTTCCGCTATC+TGG + chr4_3:40922471-40922490 None:intergenic 35.0%
GTGAAAATACCGAAAGTGAA+AGG + chr4_3:40922500-40922519 None:intergenic 35.0%
CTGAAACTATTGATAGAAGG+AGG - chr4_3:40922627-40922646 Msa0641130:intron 35.0%
GTTTCACTTGGAAGAAAACA+TGG - chr4_3:40922702-40922721 Msa0641130:intron 35.0%
CTTCCAACAATTGTCATGAA+AGG + chr4_3:40922741-40922760 None:intergenic 35.0%
CTTTCATGACAATTGTTGGA+AGG - chr4_3:40922739-40922758 Msa0641130:intron 35.0%
! AAGTCAGGAGATTTGTTTGT+TGG - chr4_3:40922777-40922796 Msa0641130:intron 35.0%
! AGTCAGGAGATTTGTTTGTT+GGG - chr4_3:40922778-40922797 Msa0641130:intron 35.0%
! GTTTGTTGGGAAAACAAGAA+AGG - chr4_3:40922791-40922810 Msa0641130:intron 35.0%
AGAAAGAAAGAGAGAGCTCA+CGG + chr4_3:40920108-40920127 None:intergenic 40.0%
!!! GTTAAGGATGTTTTGGTCAG+GGG + chr4_3:40920269-40920288 None:intergenic 40.0%
!!! GGTTAAGGATGTTTTGGTCA+GGG + chr4_3:40920270-40920289 None:intergenic 40.0%
!!! TGGTTAAGGATGTTTTGGTC+AGG + chr4_3:40920271-40920290 None:intergenic 40.0%
GTCAGGAGATAAGTAAAGAC+TGG + chr4_3:40920291-40920310 None:intergenic 40.0%
! TAGTAATCTAGAGTTCGGTC+AGG + chr4_3:40920308-40920327 None:intergenic 40.0%
TCGTGGACCGCAATTTAAAA+CGG - chr4_3:40920803-40920822 Msa0641130:CDS 40.0%
TTTATGTTTGATCGCAGTCG+TGG - chr4_3:40920837-40920856 Msa0641130:CDS 40.0%
AAGAGTTGTTGAACACAGGA+AGG - chr4_3:40920917-40920936 Msa0641130:CDS 40.0%
AGATTCCATGGGCAAGTTTA+AGG - chr4_3:40920949-40920968 Msa0641130:CDS 40.0%
GATTCCATGGGCAAGTTTAA+GGG - chr4_3:40920950-40920969 Msa0641130:CDS 40.0%
GATTACTGTCCTTTCTGCAA+AGG + chr4_3:40920991-40921010 None:intergenic 40.0%
TGTTATCGCAACTGGTCATA+CGG - chr4_3:40921121-40921140 Msa0641130:CDS 40.0%
!!! AGTCTTTCGGTCCTTGTTTT+GGG + chr4_3:40921155-40921174 None:intergenic 40.0%
!! AAGTCTTTCGGTCCTTGTTT+TGG + chr4_3:40921156-40921175 None:intergenic 40.0%
AGACTTGACCAATACAAAGG+AGG - chr4_3:40921170-40921189 Msa0641130:intron 40.0%
CCAAAAAACAACTGCAATGG+AGG + chr4_3:40921339-40921358 None:intergenic 40.0%
!!! CCTCCATTGCAGTTGTTTTT+TGG - chr4_3:40921336-40921355 Msa0641130:intron 40.0%
ATCTCACACAATCAGCACAA+TGG - chr4_3:40921507-40921526 Msa0641130:intron 40.0%
ACAGTTCAATCTCGAGCAAA+CGG + chr4_3:40921536-40921555 None:intergenic 40.0%
!!! GCACGTTCAGTTTTGATTGT+CGG - chr4_3:40921806-40921825 Msa0641130:CDS 40.0%
! ATGATTTGGATGGTCATGGA+AGG - chr4_3:40922140-40922159 Msa0641130:intron 40.0%
CTCTCAAGTACTCATCAACT+TGG + chr4_3:40922168-40922187 None:intergenic 40.0%
TGATGAGTACTTGAGAGTGA+AGG - chr4_3:40922171-40922190 Msa0641130:intron 40.0%
GATGAGTACTTGAGAGTGAA+GGG - chr4_3:40922172-40922191 Msa0641130:intron 40.0%
! AGGAACAACGTTTTCGCTAT+AGG - chr4_3:40922196-40922215 Msa0641130:intron 40.0%
CACTAACTGACAACAATGCA+TGG + chr4_3:40922283-40922302 None:intergenic 40.0%
CATGCATTGTTGTCAGTTAG+TGG - chr4_3:40922281-40922300 Msa0641130:intron 40.0%
TCAGTTAGTGGCTATAGTAG+CGG - chr4_3:40922293-40922312 Msa0641130:intron 40.0%
GATACGCTATTTAGCACAGA+TGG - chr4_3:40922343-40922362 Msa0641130:intron 40.0%
! ATCTGGGATTGACAATTGAC+AGG + chr4_3:40922454-40922473 None:intergenic 40.0%
CAATTGTCAATCCCAGATAG+CGG - chr4_3:40922456-40922475 Msa0641130:intron 40.0%
! AAACAAGGAGTGTATGCACA+AGG - chr4_3:40922579-40922598 Msa0641130:intron 40.0%
GGAGCGAAAGAACGTAAATT+AGG - chr4_3:40922648-40922667 Msa0641130:intron 40.0%
GGGAAAACAAGAAAGGGATT+AGG - chr4_3:40922798-40922817 Msa0641130:intron 40.0%
!! ATTATAGGAGGTGGTGTTGC+TGG - chr4_3:40920030-40920049 Msa0641130:three_prime_UTR 45.0%
!!! ATGTTTTGGTCAGGGGAACT+CGG + chr4_3:40920262-40920281 None:intergenic 45.0%
GAGAACGCTGTTGTCGAATA+TGG - chr4_3:40920590-40920609 Msa0641130:intron 45.0%
CAGTTTCGTTACGATGCTGA+TGG - chr4_3:40920620-40920639 Msa0641130:intron 45.0%
TTTAGAGGTCTTCGCGATTG+CGG + chr4_3:40920730-40920749 None:intergenic 45.0%
ATTGCCCTTAAACTTGCCCA+TGG + chr4_3:40920957-40920976 None:intergenic 45.0%
ATGGGCAAGTTTAAGGGCAA+TGG - chr4_3:40920956-40920975 Msa0641130:CDS 45.0%
ACTGTCCTTTCTGCAAAGGA+TGG + chr4_3:40920987-40921006 None:intergenic 45.0%
! TCTGAAGTCTTCACTGCTGA+TGG - chr4_3:40921074-40921093 Msa0641130:CDS 45.0%
CGGAATCTATCCCCAAAACA+AGG - chr4_3:40921141-40921160 Msa0641130:CDS 45.0%
!!! GTCTTTCGGTCCTTGTTTTG+GGG + chr4_3:40921154-40921173 None:intergenic 45.0%
CGATCTTGATTGCAGCATCA+AGG + chr4_3:40921380-40921399 None:intergenic 45.0%
TCACACAATCAGCACAATGG+TGG - chr4_3:40921510-40921529 Msa0641130:intron 45.0%
!!! CGTTCAGTTTTGATTGTCGG+TGG - chr4_3:40921809-40921828 Msa0641130:CDS 45.0%
!!! TCAGTTTTGATTGTCGGTGG+AGG - chr4_3:40921812-40921831 Msa0641130:CDS 45.0%
AGTACTTGAGAGTGAAGGGA+AGG - chr4_3:40922176-40922195 Msa0641130:intron 45.0%
CTGTGCTAAATAGCGTATCG+CGG + chr4_3:40922342-40922361 None:intergenic 45.0%
CACAGATGGTTTCCAGATAG+TGG - chr4_3:40922357-40922376 Msa0641130:intron 45.0%
ACGCTGCTTAAACCACTATC+TGG + chr4_3:40922372-40922391 None:intergenic 45.0%
ACAATTGTTGGAAGGCTTCC+TGG - chr4_3:40922747-40922766 Msa0641130:intron 45.0%
CTTCCTGGTATGATCAAGTC+AGG - chr4_3:40922762-40922781 Msa0641130:intron 45.0%
! TCTCCTGACTTGATCATACC+AGG + chr4_3:40922768-40922787 None:intergenic 45.0%
GGCAAGTTTAAGGGCAATGG+TGG - chr4_3:40920959-40920978 Msa0641130:CDS 50.0%
TGGAGCCATCCTTTGCAGAA+AGG - chr4_3:40920979-40920998 Msa0641130:CDS 50.0%
TCAATCAGGGTTTCAAGCCG+TGG - chr4_3:40921258-40921277 Msa0641130:intron 50.0%
!! GACGGTCCGGATTTCAAGTT+CGG + chr4_3:40921602-40921621 None:intergenic 50.0%
TGGATTGAGATTGGACGGTC+CGG + chr4_3:40921615-40921634 None:intergenic 50.0%
! GGAAACCACTTGCTACAGCA+TGG - chr4_3:40922095-40922114 Msa0641130:intron 50.0%
TCAAGCCATGCTGTAGCAAG+TGG + chr4_3:40922103-40922122 None:intergenic 50.0%
GACAGGTCAATCCCAGATAG+CGG + chr4_3:40922437-40922456 None:intergenic 50.0%
TGCAGCTGCAATTGCTGTCG+TGG - chr4_3:40920786-40920805 Msa0641130:CDS 55.0%
CAAGGATCGCTACACGACCA+CGG + chr4_3:40921278-40921297 None:intergenic 55.0%
ATTGTCGGTGGAGGTCCAAC+TGG - chr4_3:40921821-40921840 Msa0641130:CDS 55.0%
CGAGCTAGCAGCAGAGATTG+CGG - chr4_3:40921847-40921866 Msa0641130:CDS 55.0%
GCTGCTAGCTCGACACCAGT+TGG + chr4_3:40921839-40921858 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 40919947 40923012 40919947 ID=Msa0641130;Name=Msa0641130
chr4_3 mRNA 40919947 40923012 40919947 ID=Msa0641130-mRNA-1;Parent=Msa0641130;Name=Msa0641130-mRNA-1;_AED=0.25;_eAED=0.25;_QI=62|1|1|1|1|1|4|164|360
chr4_3 exon 40919947 40920386 40919947 ID=Msa0641130-mRNA-1:exon:9217;Parent=Msa0641130-mRNA-1
chr4_3 exon 40920722 40921173 40920722 ID=Msa0641130-mRNA-1:exon:9216;Parent=Msa0641130-mRNA-1
chr4_3 exon 40921768 40922024 40921768 ID=Msa0641130-mRNA-1:exon:9215;Parent=Msa0641130-mRNA-1
chr4_3 exon 40922853 40923012 40922853 ID=Msa0641130-mRNA-1:exon:9214;Parent=Msa0641130-mRNA-1
chr4_3 five_prime_UTR 40922951 40923012 40922951 ID=Msa0641130-mRNA-1:five_prime_utr;Parent=Msa0641130-mRNA-1
chr4_3 CDS 40922853 40922950 40922853 ID=Msa0641130-mRNA-1:cds;Parent=Msa0641130-mRNA-1
chr4_3 CDS 40921768 40922024 40921768 ID=Msa0641130-mRNA-1:cds;Parent=Msa0641130-mRNA-1
chr4_3 CDS 40920722 40921173 40920722 ID=Msa0641130-mRNA-1:cds;Parent=Msa0641130-mRNA-1
chr4_3 CDS 40920111 40920386 40920111 ID=Msa0641130-mRNA-1:cds;Parent=Msa0641130-mRNA-1
chr4_3 three_prime_UTR 40919947 40920110 40919947 ID=Msa0641130-mRNA-1:three_prime_utr;Parent=Msa0641130-mRNA-1
Gene Sequence

>Msa0641130

ATGGTGGAAAAGAAAGTTGTGATTATAGGAGGTGGTGTTGCTGGTGCTGTCCTTGCTAAAACTATACAACATCATGCTAATGTCACTCTTATTGATCCGAAGGAGTATTTTGAGATTCCATGGGCAAGTTTAAGGGCAATGGTGGAGCCATCCTTTGCAGAAAGGACAGTAATCAACCATAGAGAATATTTCACAAAAGGTGACCTTGTTATATCAAGTGCCATCAACATAACTGAATCTGAAGTCTTCACTGCTGATGGCCGTGAAATTGCCTATGATTATCTTGTTATCGCAACTGGTCATACGGAATCTATCCCCAAAACAAGGACCGAAAGACTTGACCAATACAAAGGAGAAAATACAAAGATAAAATCAGCACGTTCAGTTTTGATTGTCGGTGGAGGTCCAACTGGTGTCGAGCTAGCAGCAGAGATTGCGGTTGATTTTCCTGACAAAAAAGTGACTATAGTGCATAAAGGATCAAGATTGCTAGAATATATTGGACCAAAAGCTTCAAGAAAGACATTAAAATGGCTTCAATCAAGGAAAGTTGATGTGAAATTTGAGCAATCAGTTGACTTAGACTCCTTCACAAATGAAAATAGGACATATCAAACTTCAGTTGGAGAGAGTATAGAAGCAGATACACATTTTCTATGTATAGGGAAACCACTTGCTACAGCATGGCTTGATGAAACTTTTCTGAAAGATGATTTGGATGGTCATGGAAGGATCCAAGTTGATGAGTACTTGAGAGTGAAGGGAAGGAACAACGTTTTCGCTATAGGAGACATTACAGATATTCAAGAAATAAAACAAGGAGTGTATGCACAAGGTCATGCTCAATTAGTTGCCAAGAATCTGAAACTATTGATAGAAGGAGGAGCGAAAGAACGTAAATTAGGTACTTACAAGGCACAACCACCAATATCTATTGTTTCACTTGGAAGAAAACATGGTGTTGCACAATTTCCTTTCATGACAATTGTTGGAAGGCTTCCTGGTATGATCAAGTCAGGAGATTTGTTTGTTGGGAAAACAAGAAAGGGATTAGGACTTGAACCTAATGTTAAAAAATCTTAA

Protein sequence

>Msa0641130

MVEKKVVIIGGGVAGAVLAKTIQHHANVTLIDPKEYFEIPWASLRAMVEPSFAERTVINHREYFTKGDLVISSAINITESEVFTADGREIAYDYLVIATGHTESIPKTRTERLDQYKGENTKIKSARSVLIVGGGPTGVELAAEIAVDFPDKKVTIVHKGSRLLEYIGPKASRKTLKWLQSRKVDVKFEQSVDLDSFTNENRTYQTSVGESIEADTHFLCIGKPLATAWLDETFLKDDLDGHGRIQVDEYLRVKGRNNVFAIGDITDIQEIKQGVYAQGHAQLVAKNLKLLIEGGAKERKLGTYKAQPPISIVSLGRKHGVAQFPFMTIVGRLPGMIKSGDLFVGKTRKGLGLEPNVKKS*