Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757020 | sp|P22335|HSF24_SOLPE | 55.911 | 313 | 100 | 10 | 1 | 287 | 1 | 301 | 2.36e-96 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757020 | I3SQU1 | 93.056 | 288 | 19 | 1 | 1 | 287 | 1 | 288 | 0.0 | 535 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0757020 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033850 | Msa0757020 | 0.805728 | 1.160635e-49 | -8.615850e-47 |
| Msa0045910 | Msa0757020 | 0.805716 | 1.167014e-49 | -8.615850e-47 |
| Msa0076700 | Msa0757020 | 0.800369 | 1.488943e-48 | -8.615850e-47 |
| Msa0081620 | Msa0757020 | 0.812024 | 5.221092e-51 | -8.615850e-47 |
| Msa0092410 | Msa0757020 | 0.827172 | 1.811471e-54 | -8.615850e-47 |
| Msa0624120 | Msa0757020 | 0.834878 | 2.323645e-56 | -8.615850e-47 |
| Msa0714990 | Msa0757020 | 0.993369 | 2.923894e-199 | -8.615850e-47 |
| Msa0721340 | Msa0757020 | 0.829373 | 5.339491e-55 | -8.615850e-47 |
| Msa0750810 | Msa0757020 | 0.806478 | 8.067030e-50 | -8.615850e-47 |
| Msa0757020 | Msa0758250 | 0.832607 | 8.584372e-56 | -8.615850e-47 |
| Msa0757020 | Msa0794210 | 0.827908 | 1.206306e-54 | -8.615850e-47 |
| Msa0757020 | Msa0798010 | 0.895775 | 6.955302e-76 | -8.615850e-47 |
| Msa0757020 | Msa0836650 | 0.983103 | 7.736940e-157 | -8.615850e-47 |
| Msa0757020 | Msa0837870 | 0.807636 | 4.589367e-50 | -8.615850e-47 |
| Msa0757020 | Msa0845070 | 0.810948 | 8.941942e-51 | -8.615850e-47 |
| Msa0757020 | Msa0865970 | 0.811160 | 8.046041e-51 | -8.615850e-47 |
| Msa0757020 | Msa0866070 | 0.818851 | 1.579678e-52 | -8.615850e-47 |
| Msa0757020 | Msa0902830 | 0.818843 | 1.585934e-52 | -8.615850e-47 |
| Msa0757020 | Msa0972810 | 0.805648 | 1.205873e-49 | -8.615850e-47 |
| Msa0757020 | Msa1024680 | 0.805360 | 1.385789e-49 | -8.615850e-47 |
| Msa0757020 | Msa1029390 | 0.800307 | 1.532735e-48 | -8.615850e-47 |
| Msa0757020 | Msa1043120 | 0.846253 | 2.438861e-59 | -8.615850e-47 |
| Msa0757020 | Msa1115280 | 0.806493 | 8.009492e-50 | -8.615850e-47 |
| Msa0757020 | Msa1152410 | 0.801912 | 7.197630e-49 | -8.615850e-47 |
| Msa0757020 | Msa1173490 | 0.802817 | 4.685336e-49 | -8.615850e-47 |
| Msa0757020 | Msa1209190 | 0.813735 | 2.201894e-51 | -8.615850e-47 |
| Msa0757020 | Msa1214170 | 0.819068 | 1.410333e-52 | -8.615850e-47 |
| Msa0757020 | Msa1225200 | 0.814365 | 1.599062e-51 | -8.615850e-47 |
| Msa0757020 | Msa1225600 | 0.814917 | 1.207053e-51 | -8.615850e-47 |
| Msa0757020 | Msa1235390 | 0.811563 | 6.575476e-51 | -8.615850e-47 |
| Msa0757020 | Msa1259270 | 0.806160 | 9.415879e-50 | -8.615850e-47 |
| Msa0757020 | Msa1335230 | 0.800151 | 1.648516e-48 | -8.615850e-47 |
| Msa0757020 | Msa1349450 | 0.814329 | 1.628444e-51 | -8.615850e-47 |
| Msa0757020 | Msa1359320 | 0.840071 | 1.084451e-57 | -8.615850e-47 |
| Msa0757020 | Msa1360020 | 0.821374 | 4.177819e-53 | -8.615850e-47 |
| Msa0757020 | Msa1376450 | 0.806212 | 9.179543e-50 | -8.615850e-47 |
| Msa0757020 | Msa1424630 | 0.834103 | 3.636814e-56 | -8.615850e-47 |
| Msa0757020 | Msa1430550 | 0.845667 | 3.519388e-59 | -8.615850e-47 |
| Msa0757020 | Msa1465180 | 0.803811 | 2.917540e-49 | -8.615850e-47 |
| Msa0173960 | Msa0757020 | 0.801335 | 9.454254e-49 | -8.615850e-47 |
| Msa0174260 | Msa0757020 | 0.809834 | 1.555293e-50 | -8.615850e-47 |
| Msa0186950 | Msa0757020 | 0.805891 | 1.072248e-49 | -8.615850e-47 |
| Msa0187830 | Msa0757020 | 0.812099 | 5.026755e-51 | -8.615850e-47 |
| Msa0190950 | Msa0757020 | 0.848903 | 4.555729e-60 | -8.615850e-47 |
| Msa0194890 | Msa0757020 | 0.804959 | 1.681418e-49 | -8.615850e-47 |
| Msa0201570 | Msa0757020 | 0.810694 | 1.014862e-50 | -8.615850e-47 |
| Msa0222870 | Msa0757020 | 0.804223 | 2.394387e-49 | -8.615850e-47 |
| Msa0222980 | Msa0757020 | 0.802754 | 4.828179e-49 | -8.615850e-47 |
| Msa0233270 | Msa0757020 | 0.840576 | 8.000119e-58 | -8.615850e-47 |
| Msa0234590 | Msa0757020 | 0.819675 | 1.025562e-52 | -8.615850e-47 |
| Msa0235880 | Msa0757020 | 0.804303 | 2.304635e-49 | -8.615850e-47 |
| Msa0403490 | Msa0757020 | 0.820705 | 5.956093e-53 | -8.615850e-47 |
| Msa0408340 | Msa0757020 | 0.844931 | 5.569749e-59 | -8.615850e-47 |
| Msa0429090 | Msa0757020 | 0.807404 | 5.139623e-50 | -8.615850e-47 |
| Msa0240270 | Msa0757020 | 0.823996 | 1.025422e-53 | -8.615850e-47 |
| Msa0253280 | Msa0757020 | 0.808945 | 2.413108e-50 | -8.615850e-47 |
| Msa0269560 | Msa0757020 | 0.846142 | 2.614843e-59 | -8.615850e-47 |
| Msa0271550 | Msa0757020 | 0.812162 | 4.870281e-51 | -8.615850e-47 |
| Msa0277410 | Msa0757020 | 0.819129 | 1.365463e-52 | -8.615850e-47 |
| Msa0278630 | Msa0757020 | 0.800715 | 1.265553e-48 | -8.615850e-47 |
| Msa0284450 | Msa0757020 | 0.810689 | 1.017591e-50 | -8.615850e-47 |
| Msa0311470 | Msa0757020 | 0.821588 | 3.727648e-53 | -8.615850e-47 |
| Msa0311600 | Msa0757020 | 0.817730 | 2.834426e-52 | -8.615850e-47 |
| Msa0319290 | Msa0757020 | 0.805153 | 1.531449e-49 | -8.615850e-47 |
| Msa0501410 | Msa0757020 | 0.820026 | 8.526453e-53 | -8.615850e-47 |
| Msa0506860 | Msa0757020 | 0.820063 | 8.360143e-53 | -8.615850e-47 |
| Msa0524440 | Msa0757020 | 0.800227 | 1.590708e-48 | -8.615850e-47 |
| Msa0538160 | Msa0757020 | 0.810706 | 1.008996e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757020 | MtrunA17_Chr5g0402291 | 93.056 | 288 | 19 | 1 | 1 | 287 | 1 | 288 | 0.0 | 535 |
| Msa0757020 | MtrunA17_Chr8g0375041 | 49.811 | 265 | 103 | 6 | 1 | 255 | 1 | 245 | 5.90e-76 | 232 |
| Msa0757020 | MtrunA17_Chr5g0397881 | 45.353 | 269 | 119 | 7 | 2 | 252 | 17 | 275 | 1.13e-64 | 206 |
| Msa0757020 | MtrunA17_Chr3g0134031 | 47.706 | 218 | 84 | 5 | 2 | 193 | 17 | 230 | 7.84e-57 | 187 |
| Msa0757020 | MtrunA17_Chr1g0203601 | 40.613 | 261 | 103 | 6 | 2 | 235 | 11 | 246 | 3.46e-52 | 172 |
| Msa0757020 | MtrunA17_Chr6g0472421 | 44.651 | 215 | 81 | 2 | 2 | 191 | 26 | 227 | 2.19e-51 | 172 |
| Msa0757020 | MtrunA17_Chr7g0257331 | 44.385 | 187 | 80 | 1 | 3 | 189 | 16 | 178 | 1.50e-49 | 164 |
| Msa0757020 | MtrunA17_Chr5g0441531 | 40.164 | 244 | 117 | 6 | 2 | 235 | 18 | 242 | 5.69e-49 | 163 |
| Msa0757020 | MtrunA17_Chr5g0410881 | 47.514 | 181 | 69 | 3 | 1 | 181 | 24 | 178 | 2.47e-44 | 157 |
| Msa0757020 | MtrunA17_Chr7g0260331 | 69.474 | 95 | 29 | 0 | 6 | 100 | 46 | 140 | 1.01e-43 | 152 |
| Msa0757020 | MtrunA17_Chr6g0467041 | 58.407 | 113 | 44 | 1 | 8 | 117 | 21 | 133 | 1.20e-42 | 149 |
| Msa0757020 | MtrunA17_Chr8g0379701 | 39.720 | 214 | 91 | 4 | 5 | 217 | 8 | 184 | 2.67e-41 | 147 |
| Msa0757020 | MtrunA17_Chr1g0185131 | 63.636 | 99 | 36 | 0 | 7 | 105 | 30 | 128 | 4.17e-40 | 142 |
| Msa0757020 | MtrunA17_Chr4g0071051 | 64.894 | 94 | 33 | 0 | 6 | 99 | 98 | 191 | 8.23e-40 | 143 |
| Msa0757020 | MtrunA17_Chr4g0039891 | 40.000 | 200 | 88 | 3 | 9 | 208 | 12 | 179 | 3.57e-39 | 143 |
| Msa0757020 | MtrunA17_Chr8g0378061 | 56.757 | 111 | 45 | 1 | 10 | 117 | 23 | 133 | 1.18e-38 | 141 |
| Msa0757020 | MtrunA17_Chr3g0135831 | 56.481 | 108 | 45 | 1 | 6 | 113 | 43 | 148 | 1.05e-37 | 137 |
| Msa0757020 | MtrunA17_Chr2g0284481 | 40.426 | 188 | 79 | 4 | 9 | 193 | 15 | 172 | 1.17e-37 | 137 |
| Msa0757020 | MtrunA17_Chr2g0330821 | 53.846 | 117 | 51 | 1 | 6 | 119 | 76 | 192 | 3.40e-37 | 135 |
| Msa0757020 | MtrunA17_Chr1g0204741 | 35.961 | 203 | 116 | 3 | 6 | 208 | 37 | 225 | 4.89e-37 | 134 |
| Msa0757020 | MtrunA17_Chr6g0485571 | 58.824 | 102 | 42 | 0 | 1 | 102 | 3 | 104 | 8.48e-37 | 134 |
| Msa0757020 | MtrunA17_Chr4g0047421 | 36.139 | 202 | 103 | 5 | 6 | 203 | 30 | 209 | 3.42e-35 | 126 |
| Msa0757020 | MtrunA17_Chr8g0392001 | 44.382 | 178 | 65 | 5 | 8 | 181 | 21 | 168 | 2.57e-34 | 127 |
| Msa0757020 | MtrunA17_Chr1g0179321 | 62.121 | 66 | 25 | 0 | 3 | 68 | 43 | 108 | 9.84e-23 | 90.5 |
| Msa0757020 | MtrunA17_Chr4g0023771 | 55.385 | 65 | 29 | 0 | 2 | 66 | 8 | 72 | 2.88e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0757020 | AT4G36990.1 | 50.168 | 297 | 118 | 7 | 2 | 287 | 7 | 284 | 5.59e-82 | 249 |
| Msa0757020 | AT5G62020.1 | 49.756 | 205 | 97 | 3 | 2 | 202 | 16 | 218 | 2.32e-55 | 181 |
| Msa0757020 | AT4G11660.1 | 42.125 | 273 | 111 | 9 | 2 | 233 | 52 | 318 | 1.45e-53 | 179 |
| Msa0757020 | AT1G46264.1 | 43.925 | 214 | 95 | 5 | 4 | 197 | 29 | 237 | 2.64e-53 | 177 |
| Msa0757020 | AT2G41690.1 | 45.455 | 187 | 90 | 2 | 7 | 190 | 38 | 215 | 4.24e-49 | 163 |
| Msa0757020 | AT1G32330.1 | 49.432 | 176 | 65 | 2 | 6 | 181 | 34 | 185 | 6.91e-47 | 164 |
| Msa0757020 | AT1G32330.2 | 50.000 | 176 | 64 | 3 | 6 | 181 | 34 | 185 | 7.60e-47 | 164 |
| Msa0757020 | AT4G17750.1 | 69.388 | 98 | 30 | 0 | 5 | 102 | 48 | 145 | 3.76e-44 | 157 |
| Msa0757020 | AT2G26150.1 | 40.306 | 196 | 93 | 2 | 5 | 194 | 40 | 217 | 6.71e-42 | 147 |
| Msa0757020 | AT2G26150.4 | 40.306 | 196 | 93 | 2 | 5 | 194 | 40 | 217 | 6.71e-42 | 147 |
| Msa0757020 | AT3G22830.1 | 38.318 | 214 | 124 | 3 | 5 | 217 | 57 | 263 | 9.65e-42 | 148 |
| Msa0757020 | AT4G13980.1 | 62.000 | 100 | 38 | 0 | 10 | 109 | 24 | 123 | 8.68e-41 | 147 |
| Msa0757020 | AT3G02990.1 | 40.625 | 256 | 113 | 8 | 5 | 258 | 19 | 237 | 1.00e-40 | 147 |
| Msa0757020 | AT3G24520.1 | 38.426 | 216 | 83 | 4 | 8 | 216 | 16 | 188 | 1.27e-39 | 141 |
| Msa0757020 | AT5G16820.1 | 69.565 | 92 | 28 | 0 | 9 | 100 | 27 | 118 | 2.55e-39 | 143 |
| Msa0757020 | AT5G16820.2 | 69.565 | 92 | 28 | 0 | 9 | 100 | 27 | 118 | 2.55e-39 | 143 |
| Msa0757020 | AT5G43840.1 | 56.881 | 109 | 47 | 0 | 5 | 113 | 15 | 123 | 8.61e-39 | 137 |
| Msa0757020 | AT3G51910.1 | 58.654 | 104 | 42 | 1 | 6 | 109 | 26 | 128 | 4.27e-38 | 135 |
| Msa0757020 | AT5G03720.2 | 42.246 | 187 | 82 | 3 | 9 | 189 | 55 | 221 | 5.44e-38 | 139 |
| Msa0757020 | AT5G03720.1 | 42.246 | 187 | 82 | 3 | 9 | 189 | 55 | 221 | 5.44e-38 | 139 |
| Msa0757020 | AT5G54070.1 | 60.870 | 92 | 36 | 0 | 8 | 99 | 70 | 161 | 1.07e-36 | 133 |
| Msa0757020 | AT3G63350.1 | 57.732 | 97 | 41 | 0 | 3 | 99 | 22 | 118 | 6.90e-35 | 127 |
| Msa0757020 | AT4G18880.1 | 55.172 | 116 | 52 | 0 | 5 | 120 | 11 | 126 | 2.47e-33 | 126 |
| Msa0757020 | AT1G67970.1 | 57.273 | 110 | 44 | 2 | 8 | 116 | 18 | 125 | 2.67e-33 | 125 |
| Msa0757020 | AT5G45710.3 | 41.146 | 192 | 77 | 3 | 5 | 193 | 9 | 167 | 7.96e-33 | 123 |
| Msa0757020 | AT5G45710.1 | 41.146 | 192 | 77 | 3 | 5 | 193 | 9 | 167 | 7.96e-33 | 123 |
| Msa0757020 | AT4G18870.1 | 44.565 | 92 | 51 | 0 | 5 | 96 | 142 | 233 | 2.79e-22 | 94.4 |
| Msa0757020 | AT4G18870.1 | 45.745 | 94 | 46 | 3 | 5 | 96 | 9 | 99 | 6.85e-20 | 87.8 |
| Msa0757020 | AT1G77570.1 | 40.909 | 88 | 47 | 3 | 10 | 93 | 27 | 113 | 1.20e-13 | 67.4 |
Find 83 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTCGTTTCTTCCTTTC+TGG | 0.040301 | 5_2:+11701967 | Msa0757020:five_prime_UTR |
| CCACATCTAAGAAATTAATT+TGG | 0.180721 | 5_2:-11701893 | None:intergenic |
| ATATTCTCCTTCAATGTCTT+TGG | 0.217872 | 5_2:-11701820 | None:intergenic |
| TCCTTTCTGGTTTCTATTGT+TGG | 0.230031 | 5_2:+11701980 | Msa0757020:five_prime_UTR |
| TAATTGTAATCTAGGTAATA+TGG | 0.238356 | 5_2:+11704576 | Msa0757020:three_prime_UTR |
| AGAACCAACGTCACTTATTA+AGG | 0.240591 | 5_2:+11701753 | Msa0757020:five_prime_UTR |
| GAAAGCTTGTGCCAGATAAA+TGG | 0.251473 | 5_2:+11703745 | Msa0757020:CDS |
| ATAATTCCCCATACGAAAAT+AGG | 0.260531 | 5_2:-11701858 | None:intergenic |
| TTAGATGTGGCTTAAGCTAA+TGG | 0.287412 | 5_2:+11701906 | Msa0757020:five_prime_UTR |
| TTTGCAAATTCCCATTTATC+TGG | 0.289664 | 5_2:-11703756 | None:intergenic |
| TTGTTGTGCTTAAAATATTT+AGG | 0.304096 | 5_2:-11702333 | None:intergenic |
| CTGGTTTCTATTGTTGGGAT+TGG | 0.306018 | 5_2:+11701986 | Msa0757020:five_prime_UTR |
| CCTTTCTGGTTTCTATTGTT+GGG | 0.310708 | 5_2:+11701981 | Msa0757020:five_prime_UTR |
| TGGTTTCTATTGTTGGGATT+GGG | 0.347860 | 5_2:+11701987 | Msa0757020:five_prime_UTR |
| GTTTGAAATTGTTTGGTGTT+TGG | 0.347895 | 5_2:+11704213 | Msa0757020:CDS |
| GGATCCTGCTCCGTCGTTGC+CGG | 0.352068 | 5_2:-11703907 | None:intergenic |
| ATTTATCTGGCACAAGCTTT+CGG | 0.357484 | 5_2:-11703743 | None:intergenic |
| TATTCTCCTTCAATGTCTTT+GGG | 0.359473 | 5_2:-11701819 | None:intergenic |
| CCGTCGTTGCCGGAGTTTGA+TGG | 0.360239 | 5_2:-11703897 | None:intergenic |
| CGAAACCTTGAGTTGTGAAT+TGG | 0.361410 | 5_2:+11704037 | Msa0757020:CDS |
| CACATCTAAGAAATTAATTT+GGG | 0.362304 | 5_2:-11701892 | None:intergenic |
| GTTGGTGAAGTTGAAGAAAA+TGG | 0.365129 | 5_2:+11704182 | Msa0757020:CDS |
| CGTGTGGAACCGGTTTCATT+TGG | 0.394345 | 5_2:+11701695 | Msa0757020:five_prime_UTR |
| GTTGTTGTTTCCACTGATCC+AGG | 0.401148 | 5_2:-11703960 | None:intergenic |
| CTCGATAAGTTAACATATTG+AGG | 0.405483 | 5_2:-11703987 | None:intergenic |
| ATTATGCGATCGATTTGATC+TGG | 0.408543 | 5_2:-11704122 | None:intergenic |
| TGTTATCATGTTGTCTGGTT+TGG | 0.415002 | 5_2:+11704715 | Msa0757020:three_prime_UTR |
| AGAGATTGTTTGAAATTGTT+TGG | 0.415249 | 5_2:+11704206 | Msa0757020:CDS |
| GTTGTTGTTATCATGTTGTC+TGG | 0.416787 | 5_2:+11704710 | Msa0757020:three_prime_UTR |
| TCTATTGGTACGTGTGGAAC+CGG | 0.422455 | 5_2:+11701685 | Msa0757020:five_prime_UTR |
| CATATCTATCATCAATCTAT+TGG | 0.424088 | 5_2:+11701670 | Msa0757020:five_prime_UTR |
| GAGGCCCACCATAGCTCAAT+TGG | 0.429636 | 5_2:-11704292 | None:intergenic |
| CATTATTGACCAAATGAAAC+CGG | 0.432836 | 5_2:-11701704 | None:intergenic |
| TAATTAGTTATCATCATGGT+TGG | 0.448542 | 5_2:+11704492 | Msa0757020:three_prime_UTR |
| TGAGTTGGAGGAAGAGGTTG+AGG | 0.450915 | 5_2:-11703931 | None:intergenic |
| CTTGAACACATGGAAGAAAC+AGG | 0.452605 | 5_2:-11704536 | None:intergenic |
| AAAGCTTGTGCCAGATAAAT+GGG | 0.453955 | 5_2:+11703746 | Msa0757020:CDS |
| CCAAATTAATTTCTTAGATG+TGG | 0.468547 | 5_2:+11701893 | Msa0757020:five_prime_UTR |
| AATGTCGCAGCGGTCGGCGC+CGG | 0.469760 | 5_2:+11702185 | Msa0757020:exon |
| CCAACGTCACTTATTAAGGT+TGG | 0.477628 | 5_2:+11701757 | Msa0757020:five_prime_UTR |
| TGGAGAGTTGTCATTGATGC+TGG | 0.489530 | 5_2:-11703877 | None:intergenic |
| ACAACCGTCGTCACAACCCC+TGG | 0.491280 | 5_2:+11703842 | Msa0757020:CDS |
| ATATACTAATAGTCAATGTA+TGG | 0.499722 | 5_2:+11704632 | Msa0757020:three_prime_UTR |
| TCTAAAAGACAATTTAAATG+TGG | 0.501767 | 5_2:+11704097 | Msa0757020:CDS |
| CTAAAAGACAATTTAAATGT+GGG | 0.505450 | 5_2:+11704098 | Msa0757020:CDS |
| ATCTGAAATGTGGCAAGCTA+AGG | 0.505904 | 5_2:-11704405 | None:intergenic |
| TATCGGTGAGGAGGTGTTTG+TGG | 0.509612 | 5_2:-11703797 | None:intergenic |
| ACAGTAATTAGTTATCATCA+TGG | 0.520769 | 5_2:+11704488 | Msa0757020:three_prime_UTR |
| AACTCCGGCAACGACGGAGC+AGG | 0.525429 | 5_2:+11703903 | Msa0757020:CDS |
| GTTGGAGGAAGAGGTTGAGG+TGG | 0.526221 | 5_2:-11703928 | None:intergenic |
| GTCTCGCCCAAAGACATTGA+AGG | 0.526921 | 5_2:+11701813 | Msa0757020:five_prime_UTR |
| GAAATAAGCAATAAGAAGAG+AGG | 0.527898 | 5_2:+11704260 | Msa0757020:CDS |
| TTGTTGTTTCCACTGATCCA+GGG | 0.529235 | 5_2:-11703959 | None:intergenic |
| TGGTGGGCCTCGAGCTAAAG+TGG | 0.533968 | 5_2:+11704304 | Msa0757020:CDS |
| AATTAGTTATCATCATGGTT+GGG | 0.534493 | 5_2:+11704493 | Msa0757020:three_prime_UTR |
| ATATTAGTTGAAGGGTTGAT+CGG | 0.535066 | 5_2:+11702157 | Msa0757020:five_prime_UTR |
| ACGTGCCAATTCACAACTCA+AGG | 0.543571 | 5_2:-11704042 | None:intergenic |
| CGACGGATGATGTGATATCA+TGG | 0.550146 | 5_2:+11702250 | Msa0757020:CDS |
| CATCAATCTATTGGTACGTG+TGG | 0.562918 | 5_2:+11701679 | Msa0757020:five_prime_UTR |
| AAAGAAACAATGCGAAGAGT+TGG | 0.565353 | 5_2:+11704067 | Msa0757020:CDS |
| GCTTCCAGGGGTTGTGACGA+CGG | 0.568930 | 5_2:-11703846 | None:intergenic |
| TTGTGACGACGGTTGTGAGA+TGG | 0.569926 | 5_2:-11703835 | None:intergenic |
| GACAACTCTCCATCAAACTC+CGG | 0.573360 | 5_2:+11703888 | Msa0757020:CDS |
| CCATCAAACTCCGGCAACGA+CGG | 0.576121 | 5_2:+11703897 | Msa0757020:CDS |
| GTTGTGAACATGATGAAAAG+TGG | 0.578148 | 5_2:+11704359 | Msa0757020:CDS |
| TTTGTTGAAGACGTATCAGA+TGG | 0.581317 | 5_2:+11702215 | Msa0757020:CDS |
| ACGAATATTCGTATACGTTG+TGG | 0.595542 | 5_2:+11704603 | Msa0757020:three_prime_UTR |
| CCCAACAATAGAAACCAGAA+AGG | 0.597826 | 5_2:-11701981 | None:intergenic |
| TTGTTACCCACTTTAGCTCG+AGG | 0.613620 | 5_2:-11704311 | None:intergenic |
| GGCGTTTGATATCGGTGAGG+AGG | 0.622756 | 5_2:-11703806 | None:intergenic |
| ATTAACACAACTTGAACACA+TGG | 0.627188 | 5_2:-11704546 | None:intergenic |
| GAATCTGTTCAAAATGCGGT+TGG | 0.630106 | 5_2:+11704164 | Msa0757020:CDS |
| GTGATATCATGGAGTGAGAG+TGG | 0.634834 | 5_2:+11702261 | Msa0757020:CDS |
| GAAGACCAATTGAGCTATGG+TGG | 0.636764 | 5_2:+11704287 | Msa0757020:CDS |
| CCAACCTTAATAAGTGACGT+TGG | 0.639053 | 5_2:-11701757 | None:intergenic |
| GGTGGGCCTCGAGCTAAAGT+GGG | 0.645793 | 5_2:+11704305 | Msa0757020:CDS |
| TGTGAAGACCAATTGAGCTA+TGG | 0.646584 | 5_2:+11704284 | Msa0757020:CDS |
| GTTGAAGACGTATCAGATGG+TGG | 0.648048 | 5_2:+11702218 | Msa0757020:CDS |
| TTGTGAATCTGTTCAAAATG+CGG | 0.658508 | 5_2:+11704160 | Msa0757020:CDS |
| GAACATGATGAAAAGTGGCA+AGG | 0.659767 | 5_2:+11704364 | Msa0757020:CDS |
| GCAAACGAAAATTTCAAACG+AGG | 0.682155 | 5_2:+11703774 | Msa0757020:CDS |
| TGCGGCGTTTGATATCGGTG+AGG | 0.683931 | 5_2:-11703809 | None:intergenic |
| AAGACCAATTGAGCTATGGT+GGG | 0.693450 | 5_2:+11704288 | Msa0757020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATTATTTTTATTTTAA+TGG | + | chr5_2:11702728-11702747 | Msa0757020:intron | 0.0% |
| !! | GTAATAAAATAACAAAAATA+TGG | - | chr5_2:11701630-11701649 | None:intergenic | 10.0% |
| !!! | AATTATTTTTTAGCAATTTT+TGG | + | chr5_2:11702515-11702534 | Msa0757020:intron | 10.0% |
| !!! | ATTATTTTTTAGCAATTTTT+GGG | + | chr5_2:11702516-11702535 | Msa0757020:intron | 10.0% |
| !!! | TATTTTAACAAATAGTAAAT+AGG | - | chr5_2:11702888-11702907 | None:intergenic | 10.0% |
| !! | TAGAAAAATATATTAGTTGA+AGG | + | chr5_2:11702148-11702167 | Msa0757020:five_prime_UTR | 15.0% |
| !! | AGAAAAATATATTAGTTGAA+GGG | + | chr5_2:11702149-11702168 | Msa0757020:five_prime_UTR | 15.0% |
| !! | AATTATCTTAAACTAATCAA+AGG | - | chr5_2:11702462-11702481 | None:intergenic | 15.0% |
| !!! | TTATTTTTTAGCAATTTTTG+GGG | + | chr5_2:11702517-11702536 | Msa0757020:intron | 15.0% |
| !!! | TGTTCAAATATTTTGATTTT+AGG | + | chr5_2:11702770-11702789 | Msa0757020:intron | 15.0% |
| !! | AATTATAATACACTTTCATA+GGG | - | chr5_2:11703190-11703209 | None:intergenic | 15.0% |
| !! | AAATTATAATACACTTTCAT+AGG | - | chr5_2:11703191-11703210 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr5_2:11703424-11703443 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr5_2:11703423-11703442 | Msa0757020:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr5_2:11703447-11703466 | Msa0757020:intron | 15.0% |
| !! | AGAAAAAATTATTATTGCAT+TGG | + | chr5_2:11703510-11703529 | Msa0757020:intron | 15.0% |
| !!! | TAAATTTTATATCTGAAATG+TGG | - | chr5_2:11704418-11704437 | None:intergenic | 15.0% |
| !!! | TTTTGATTTAATTGTAATCT+AGG | + | chr5_2:11704568-11704587 | Msa0757020:three_prime_UTR | 15.0% |
| !! | AATAACAAAAATATGGTTGT+TGG | - | chr5_2:11701623-11701642 | None:intergenic | 20.0% |
| !! | CACATCTAAGAAATTAATTT+GGG | - | chr5_2:11701895-11701914 | None:intergenic | 20.0% |
| !! | TTGTTGTGCTTAAAATATTT+AGG | - | chr5_2:11702336-11702355 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr5_2:11703433-11703452 | None:intergenic | 20.0% |
| !! | TCTAAAAGACAATTTAAATG+TGG | + | chr5_2:11704097-11704116 | Msa0757020:CDS | 20.0% |
| !! | CTAAAAGACAATTTAAATGT+GGG | + | chr5_2:11704098-11704117 | Msa0757020:CDS | 20.0% |
| !! | TAATTGTAATCTAGGTAATA+TGG | + | chr5_2:11704576-11704595 | Msa0757020:three_prime_UTR | 20.0% |
| !! | ATATACTAATAGTCAATGTA+TGG | + | chr5_2:11704632-11704651 | Msa0757020:three_prime_UTR | 20.0% |
| ! | CATATCTATCATCAATCTAT+TGG | + | chr5_2:11701670-11701689 | Msa0757020:five_prime_UTR | 25.0% |
| !! | AAAACTTTCCTATTTTCGTA+TGG | + | chr5_2:11701850-11701869 | Msa0757020:five_prime_UTR | 25.0% |
| !! | AAACTTTCCTATTTTCGTAT+GGG | + | chr5_2:11701851-11701870 | Msa0757020:five_prime_UTR | 25.0% |
| ! | CCACATCTAAGAAATTAATT+TGG | - | chr5_2:11701896-11701915 | None:intergenic | 25.0% |
| ! | CCAAATTAATTTCTTAGATG+TGG | + | chr5_2:11701893-11701912 | Msa0757020:five_prime_UTR | 25.0% |
| !! | GAATGAACTAAATTTTCTGA+AGG | - | chr5_2:11701952-11701971 | None:intergenic | 25.0% |
| ! | CTTCAAATAAAAATCTGTCT+AGG | - | chr5_2:11702049-11702068 | None:intergenic | 25.0% |
| ! | CATGTTCATGAAAAACTAAA+AGG | - | chr5_2:11702416-11702435 | None:intergenic | 25.0% |
| !!! | GATGATTTACTTTTAGTGTT+CGG | + | chr5_2:11703288-11703307 | Msa0757020:intron | 25.0% |
| !!! | TAGGTTTTATCTTAACACTT+TGG | + | chr5_2:11703674-11703693 | Msa0757020:intron | 25.0% |
| !! | AGAGATTGTTTGAAATTGTT+TGG | + | chr5_2:11704206-11704225 | Msa0757020:CDS | 25.0% |
| ! | ACAGTAATTAGTTATCATCA+TGG | + | chr5_2:11704488-11704507 | Msa0757020:three_prime_UTR | 25.0% |
| ! | TAATTAGTTATCATCATGGT+TGG | + | chr5_2:11704492-11704511 | Msa0757020:three_prime_UTR | 25.0% |
| ! | AATTAGTTATCATCATGGTT+GGG | + | chr5_2:11704493-11704512 | Msa0757020:three_prime_UTR | 25.0% |
| CATTATTGACCAAATGAAAC+CGG | - | chr5_2:11701707-11701726 | None:intergenic | 30.0% | |
| TATTCTCCTTCAATGTCTTT+GGG | - | chr5_2:11701822-11701841 | None:intergenic | 30.0% | |
| ATATTCTCCTTCAATGTCTT+TGG | - | chr5_2:11701823-11701842 | None:intergenic | 30.0% | |
| ! | AACTTTCCTATTTTCGTATG+GGG | + | chr5_2:11701852-11701871 | Msa0757020:five_prime_UTR | 30.0% |
| ATAATTCCCCATACGAAAAT+AGG | - | chr5_2:11701861-11701880 | None:intergenic | 30.0% | |
| ! | ATATTAGTTGAAGGGTTGAT+CGG | + | chr5_2:11702157-11702176 | Msa0757020:five_prime_UTR | 30.0% |
| TGATACGTCTTCAACAAAAA+CGG | - | chr5_2:11702213-11702232 | None:intergenic | 30.0% | |
| TGAAAAACTAAAAGGAGAGA+GGG | - | chr5_2:11702408-11702427 | None:intergenic | 30.0% | |
| ATGAAAAACTAAAAGGAGAG+AGG | - | chr5_2:11702409-11702428 | None:intergenic | 30.0% | |
| !!! | AATTTTTGGGGTTCATAACA+AGG | + | chr5_2:11702529-11702548 | Msa0757020:intron | 30.0% |
| CAATACTTTCCTTCCAATTA+GGG | - | chr5_2:11702860-11702879 | None:intergenic | 30.0% | |
| CTACCAAGTAAATTCACTTT+CGG | - | chr5_2:11702953-11702972 | None:intergenic | 30.0% | |
| TTGGTAGATCACAATGAATT+AGG | + | chr5_2:11702966-11702985 | Msa0757020:intron | 30.0% | |
| CACATCTTTACAATTATGCA+CGG | - | chr5_2:11703259-11703278 | None:intergenic | 30.0% | |
| !! | ATTTACTTTTAGTGTTCGGA+TGG | + | chr5_2:11703292-11703311 | Msa0757020:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr5_2:11703341-11703360 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr5_2:11703342-11703361 | Msa0757020:intron | 30.0% |
| !! | AAGCGACATTCATTTTGAAA+CGG | + | chr5_2:11703540-11703559 | Msa0757020:intron | 30.0% |
| ! | AGTGTTCAATGGTTTACTTT+TGG | + | chr5_2:11703611-11703630 | Msa0757020:intron | 30.0% |
| GAAAACGTGCTAATATTTGA+GGG | - | chr5_2:11703649-11703668 | None:intergenic | 30.0% | |
| AGAAAACGTGCTAATATTTG+AGG | - | chr5_2:11703650-11703669 | None:intergenic | 30.0% | |
| ! | ATTAGCACGTTTTCTTTTCT+AGG | + | chr5_2:11703655-11703674 | Msa0757020:intron | 30.0% |
| TGAGAAAATGCTAATTACCA+TGG | + | chr5_2:11703700-11703719 | Msa0757020:intron | 30.0% | |
| TTTGCAAATTCCCATTTATC+TGG | - | chr5_2:11703759-11703778 | None:intergenic | 30.0% | |
| CTCGATAAGTTAACATATTG+AGG | - | chr5_2:11703990-11704009 | None:intergenic | 30.0% | |
| TTGTGAATCTGTTCAAAATG+CGG | + | chr5_2:11704160-11704179 | Msa0757020:CDS | 30.0% | |
| !! | GTTTGAAATTGTTTGGTGTT+TGG | + | chr5_2:11704213-11704232 | Msa0757020:CDS | 30.0% |
| GAAATAAGCAATAAGAAGAG+AGG | + | chr5_2:11704260-11704279 | Msa0757020:CDS | 30.0% | |
| ATTAACACAACTTGAACACA+TGG | - | chr5_2:11704549-11704568 | None:intergenic | 30.0% | |
| AGAACCAACGTCACTTATTA+AGG | + | chr5_2:11701753-11701772 | Msa0757020:five_prime_UTR | 35.0% | |
| TTAGATGTGGCTTAAGCTAA+TGG | + | chr5_2:11701906-11701925 | Msa0757020:five_prime_UTR | 35.0% | |
| !! | TCCTTTCTGGTTTCTATTGT+TGG | + | chr5_2:11701980-11701999 | Msa0757020:five_prime_UTR | 35.0% |
| !! | CCTTTCTGGTTTCTATTGTT+GGG | + | chr5_2:11701981-11702000 | Msa0757020:five_prime_UTR | 35.0% |
| TGGTTTCTATTGTTGGGATT+GGG | + | chr5_2:11701987-11702006 | Msa0757020:five_prime_UTR | 35.0% | |
| TTTGTTGAAGACGTATCAGA+TGG | + | chr5_2:11702215-11702234 | Msa0757020:CDS | 35.0% | |
| !!! | GAAACATGCTGATTTTGCAA+GGG | + | chr5_2:11702302-11702321 | Msa0757020:CDS | 35.0% |
| ! | GGTTTTCAATCTTTTCGTGT+AGG | - | chr5_2:11702819-11702838 | None:intergenic | 35.0% |
| ! | CCAATTAGGGTATTCTACTT+CGG | - | chr5_2:11702847-11702866 | None:intergenic | 35.0% |
| AGTAGAATACCCTAATTGGA+AGG | + | chr5_2:11702848-11702867 | Msa0757020:intron | 35.0% | |
| CCAATACTTTCCTTCCAATT+AGG | - | chr5_2:11702861-11702880 | None:intergenic | 35.0% | |
| ! | CCTAATTGGAAGGAAAGTAT+TGG | + | chr5_2:11702858-11702877 | Msa0757020:intron | 35.0% |
| ACACCGAAAGTGAATTTACT+TGG | + | chr5_2:11702947-11702966 | Msa0757020:intron | 35.0% | |
| GGACATCGACGTTAAAAAAT+TGG | - | chr5_2:11703238-11703257 | None:intergenic | 35.0% | |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr5_2:11703472-11703491 | Msa0757020:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr5_2:11703476-11703495 | Msa0757020:intron | 35.0% |
| !!! | GACATTCATTTTGAAACGGA+GGG | + | chr5_2:11703580-11703599 | Msa0757020:intron | 35.0% |
| !!! | GGGAGTATTTTAGTGTTCAA+TGG | + | chr5_2:11703600-11703619 | Msa0757020:intron | 35.0% |
| ! | ACCATGGTTTTTGAATTTGC+AGG | + | chr5_2:11703716-11703735 | Msa0757020:intron | 35.0% |
| ! | CCATGGTTTTTGAATTTGCA+GGG | + | chr5_2:11703717-11703736 | Msa0757020:intron | 35.0% |
| ATTTATCTGGCACAAGCTTT+CGG | - | chr5_2:11703746-11703765 | None:intergenic | 35.0% | |
| AAAGCTTGTGCCAGATAAAT+GGG | + | chr5_2:11703746-11703765 | Msa0757020:CDS | 35.0% | |
| GCAAACGAAAATTTCAAACG+AGG | + | chr5_2:11703774-11703793 | Msa0757020:CDS | 35.0% | |
| AAAGAAACAATGCGAAGAGT+TGG | + | chr5_2:11704067-11704086 | Msa0757020:CDS | 35.0% | |
| !! | ATTATGCGATCGATTTGATC+TGG | - | chr5_2:11704125-11704144 | None:intergenic | 35.0% |
| ! | GTTGGTGAAGTTGAAGAAAA+TGG | + | chr5_2:11704182-11704201 | Msa0757020:CDS | 35.0% |
| GTTGTGAACATGATGAAAAG+TGG | + | chr5_2:11704359-11704378 | Msa0757020:CDS | 35.0% | |
| ACGAATATTCGTATACGTTG+TGG | + | chr5_2:11704603-11704622 | Msa0757020:three_prime_UTR | 35.0% | |
| ! | GTTGTTGTTATCATGTTGTC+TGG | + | chr5_2:11704710-11704729 | Msa0757020:three_prime_UTR | 35.0% |
| TGTTATCATGTTGTCTGGTT+TGG | + | chr5_2:11704715-11704734 | Msa0757020:three_prime_UTR | 35.0% | |
| CATCAATCTATTGGTACGTG+TGG | + | chr5_2:11701679-11701698 | Msa0757020:five_prime_UTR | 40.0% | |
| CCAACCTTAATAAGTGACGT+TGG | - | chr5_2:11701760-11701779 | None:intergenic | 40.0% | |
| CCAACGTCACTTATTAAGGT+TGG | + | chr5_2:11701757-11701776 | Msa0757020:five_prime_UTR | 40.0% | |
| CATTCTCGTTTCTTCCTTTC+TGG | + | chr5_2:11701967-11701986 | Msa0757020:five_prime_UTR | 40.0% | |
| CCCAACAATAGAAACCAGAA+AGG | - | chr5_2:11701984-11702003 | None:intergenic | 40.0% | |
| CTGGTTTCTATTGTTGGGAT+TGG | + | chr5_2:11701986-11702005 | Msa0757020:five_prime_UTR | 40.0% | |
| !!! | GTGGTGAAAGTTTTGTTGTG+TGG | + | chr5_2:11702280-11702299 | Msa0757020:CDS | 40.0% |
| !!! | GGAAACATGCTGATTTTGCA+AGG | + | chr5_2:11702301-11702320 | Msa0757020:CDS | 40.0% |
| CCGAAGTAGAATACCCTAAT+TGG | + | chr5_2:11702844-11702863 | Msa0757020:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+TGG | - | chr5_2:11703337-11703356 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr5_2:11703475-11703494 | Msa0757020:intron | 40.0% |
| !!! | CGACATTCATTTTGAAACGG+AGG | + | chr5_2:11703579-11703598 | Msa0757020:intron | 40.0% |
| CCCTGCAAATTCAAAAACCA+TGG | - | chr5_2:11703720-11703739 | None:intergenic | 40.0% | |
| GAAAGCTTGTGCCAGATAAA+TGG | + | chr5_2:11703745-11703764 | Msa0757020:CDS | 40.0% | |
| !!! | GTTTTTTGAGTTGGAGGAAG+AGG | - | chr5_2:11703940-11703959 | None:intergenic | 40.0% |
| !!! | TGATCCAGGGTTTTTTGAGT+TGG | - | chr5_2:11703949-11703968 | None:intergenic | 40.0% |
| !! | TTGTTGTTTCCACTGATCCA+GGG | - | chr5_2:11703962-11703981 | None:intergenic | 40.0% |
| ! | CGAAACCTTGAGTTGTGAAT+TGG | + | chr5_2:11704037-11704056 | Msa0757020:CDS | 40.0% |
| GAATCTGTTCAAAATGCGGT+TGG | + | chr5_2:11704164-11704183 | Msa0757020:CDS | 40.0% | |
| TGTGAAGACCAATTGAGCTA+TGG | + | chr5_2:11704284-11704303 | Msa0757020:CDS | 40.0% | |
| AAGACCAATTGAGCTATGGT+GGG | + | chr5_2:11704288-11704307 | Msa0757020:CDS | 40.0% | |
| GAACATGATGAAAAGTGGCA+AGG | + | chr5_2:11704364-11704383 | Msa0757020:CDS | 40.0% | |
| ! | ATCTGAAATGTGGCAAGCTA+AGG | - | chr5_2:11704408-11704427 | None:intergenic | 40.0% |
| CTTGAACACATGGAAGAAAC+AGG | - | chr5_2:11704539-11704558 | None:intergenic | 40.0% | |
| TCTATTGGTACGTGTGGAAC+CGG | + | chr5_2:11701685-11701704 | Msa0757020:five_prime_UTR | 45.0% | |
| ATCGGAGAAAAATGTCGCAG+CGG | + | chr5_2:11702175-11702194 | Msa0757020:exon | 45.0% | |
| GTTGAAGACGTATCAGATGG+TGG | + | chr5_2:11702218-11702237 | Msa0757020:CDS | 45.0% | |
| !!! | GATGGTGGATGATTTTGCGA+CGG | + | chr5_2:11702233-11702252 | Msa0757020:CDS | 45.0% |
| CGACGGATGATGTGATATCA+TGG | + | chr5_2:11702250-11702269 | Msa0757020:CDS | 45.0% | |
| GTGATATCATGGAGTGAGAG+TGG | + | chr5_2:11702261-11702280 | Msa0757020:CDS | 45.0% | |
| GGGTATTCTACTTCGGTAGA+AGG | - | chr5_2:11702840-11702859 | None:intergenic | 45.0% | |
| ! | GGTTTTGCGGCGTTTGATAT+CGG | - | chr5_2:11703817-11703836 | None:intergenic | 45.0% |
| !! | ACGGTTGTGAGATGGTTTTG+CGG | - | chr5_2:11703830-11703849 | None:intergenic | 45.0% |
| !!! | CTGGTTTTTTCAGCTTCCAG+GGG | - | chr5_2:11703861-11703880 | None:intergenic | 45.0% |
| !!! | GCTGGTTTTTTCAGCTTCCA+GGG | - | chr5_2:11703862-11703881 | None:intergenic | 45.0% |
| !!! | TGCTGGTTTTTTCAGCTTCC+AGG | - | chr5_2:11703863-11703882 | None:intergenic | 45.0% |
| TGGAGAGTTGTCATTGATGC+TGG | - | chr5_2:11703880-11703899 | None:intergenic | 45.0% | |
| GACAACTCTCCATCAAACTC+CGG | + | chr5_2:11703888-11703907 | Msa0757020:CDS | 45.0% | |
| TCCTCCAACTCAAAAAACCC+TGG | + | chr5_2:11703942-11703961 | Msa0757020:CDS | 45.0% | |
| !!! | TCCAGGGTTTTTTGAGTTGG+AGG | - | chr5_2:11703946-11703965 | None:intergenic | 45.0% |
| CTCAAAAAACCCTGGATCAG+TGG | + | chr5_2:11703950-11703969 | Msa0757020:CDS | 45.0% | |
| !! | GTTGTTGTTTCCACTGATCC+AGG | - | chr5_2:11703963-11703982 | None:intergenic | 45.0% |
| ACGTGCCAATTCACAACTCA+AGG | - | chr5_2:11704045-11704064 | None:intergenic | 45.0% | |
| GAAGACCAATTGAGCTATGG+TGG | + | chr5_2:11704287-11704306 | Msa0757020:CDS | 45.0% | |
| ! | TTGTTACCCACTTTAGCTCG+AGG | - | chr5_2:11704314-11704333 | None:intergenic | 45.0% |
| ! | CGTGTGGAACCGGTTTCATT+TGG | + | chr5_2:11701695-11701714 | Msa0757020:five_prime_UTR | 50.0% |
| GTCTCGCCCAAAGACATTGA+AGG | + | chr5_2:11701813-11701832 | Msa0757020:five_prime_UTR | 50.0% | |
| GAGAAAAATGTCGCAGCGGT+CGG | + | chr5_2:11702179-11702198 | Msa0757020:exon | 50.0% | |
| GTCTTCAACAAAAACGGCGC+CGG | - | chr5_2:11702207-11702226 | None:intergenic | 50.0% | |
| !! | TATCGGTGAGGAGGTGTTTG+TGG | - | chr5_2:11703800-11703819 | None:intergenic | 50.0% |
| TTGTGACGACGGTTGTGAGA+TGG | - | chr5_2:11703838-11703857 | None:intergenic | 50.0% | |
| ! | TGAGTTGGAGGAAGAGGTTG+AGG | - | chr5_2:11703934-11703953 | None:intergenic | 50.0% |
| GGCGTTTGATATCGGTGAGG+AGG | - | chr5_2:11703809-11703828 | None:intergenic | 55.0% | |
| TGCGGCGTTTGATATCGGTG+AGG | - | chr5_2:11703812-11703831 | None:intergenic | 55.0% | |
| CCATCAAACTCCGGCAACGA+CGG | + | chr5_2:11703897-11703916 | Msa0757020:CDS | 55.0% | |
| GTTGGAGGAAGAGGTTGAGG+TGG | - | chr5_2:11703931-11703950 | None:intergenic | 55.0% | |
| GAGGCCCACCATAGCTCAAT+TGG | - | chr5_2:11704295-11704314 | None:intergenic | 55.0% | |
| ACAACCGTCGTCACAACCCC+TGG | + | chr5_2:11703842-11703861 | Msa0757020:CDS | 60.0% | |
| GCTTCCAGGGGTTGTGACGA+CGG | - | chr5_2:11703849-11703868 | None:intergenic | 60.0% | |
| CCGTCGTTGCCGGAGTTTGA+TGG | - | chr5_2:11703900-11703919 | None:intergenic | 60.0% | |
| ! | TGGTGGGCCTCGAGCTAAAG+TGG | + | chr5_2:11704304-11704323 | Msa0757020:CDS | 60.0% |
| GGTGGGCCTCGAGCTAAAGT+GGG | + | chr5_2:11704305-11704324 | Msa0757020:CDS | 60.0% | |
| AACTCCGGCAACGACGGAGC+AGG | + | chr5_2:11703903-11703922 | Msa0757020:CDS | 65.0% | |
| GGATCCTGCTCCGTCGTTGC+CGG | - | chr5_2:11703910-11703929 | None:intergenic | 65.0% | |
| AATGTCGCAGCGGTCGGCGC+CGG | + | chr5_2:11702185-11702204 | Msa0757020:exon | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 11701614 | 11704738 | 11701614 | ID=Msa0757020;Name=Msa0757020 |
| chr5_2 | mRNA | 11701614 | 11704738 | 11701614 | ID=Msa0757020-mRNA-1;Parent=Msa0757020;Name=Msa0757020-mRNA-1;_AED=0.00;_eAED=0.00;_QI=572|1|1|1|1|1|2|341|287 |
| chr5_2 | exon | 11701614 | 11702389 | 11701614 | ID=Msa0757020-mRNA-1:exon:5278;Parent=Msa0757020-mRNA-1 |
| chr5_2 | exon | 11703738 | 11704738 | 11703738 | ID=Msa0757020-mRNA-1:exon:5279;Parent=Msa0757020-mRNA-1 |
| chr5_2 | five_prime_UTR | 11701614 | 11702185 | 11701614 | ID=Msa0757020-mRNA-1:five_prime_utr;Parent=Msa0757020-mRNA-1 |
| chr5_2 | CDS | 11702186 | 11702389 | 11702186 | ID=Msa0757020-mRNA-1:cds;Parent=Msa0757020-mRNA-1 |
| chr5_2 | CDS | 11703738 | 11704397 | 11703738 | ID=Msa0757020-mRNA-1:cds;Parent=Msa0757020-mRNA-1 |
| chr5_2 | three_prime_UTR | 11704398 | 11704738 | 11704398 | ID=Msa0757020-mRNA-1:three_prime_utr;Parent=Msa0757020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
