Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279640 | ACJ84241.1 | 95.327 | 107 | 5 | 0 | 1 | 107 | 1 | 107 | 2.91e-70 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279640 | sp|O82225|GGP5_ARATH | 46.535 | 101 | 54 | 0 | 7 | 107 | 5 | 105 | 8.49e-30 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279640 | B7FHL2 | 95.327 | 107 | 5 | 0 | 1 | 107 | 1 | 107 | 1.39e-70 | 220 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102750 | Msa0279640 | 0.804467 | 2.130112e-49 | -8.615850e-47 |
| Msa0222920 | Msa0279640 | 0.803796 | 2.938518e-49 | -8.615850e-47 |
| Msa0279640 | Msa0302450 | 0.809954 | 1.465630e-50 | -8.615850e-47 |
| Msa0279640 | Msa0754680 | 0.826700 | 2.349542e-54 | -8.615850e-47 |
| Msa0279640 | Msa0797350 | 0.813507 | 2.471106e-51 | -8.615850e-47 |
| Msa0279640 | Msa1390120 | 0.821840 | 3.259236e-53 | -8.615850e-47 |
| Msa0279640 | Msa1395530 | 0.826265 | 2.982800e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279640 | MtrunA17_Chr2g0279701 | 86.885 | 122 | 13 | 1 | 1 | 119 | 1 | 122 | 4.20e-74 | 221 |
| Msa0279640 | MtrunA17_Chr2g0279701 | 94.118 | 34 | 2 | 0 | 107 | 140 | 212 | 245 | 4.92e-15 | 69.3 |
| Msa0279640 | MtrunA17_Chr5g0437551 | 58.491 | 106 | 44 | 0 | 2 | 107 | 1 | 106 | 5.54e-45 | 142 |
| Msa0279640 | MtrunA17_Chr4g0049711 | 63.000 | 100 | 37 | 0 | 8 | 107 | 9 | 108 | 7.16e-41 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279640 | AT2G23970.1 | 46.535 | 101 | 54 | 0 | 7 | 107 | 5 | 105 | 8.63e-31 | 111 |
| Msa0279640 | AT4G30530.1 | 48.544 | 103 | 53 | 0 | 5 | 107 | 2 | 104 | 1.81e-30 | 110 |
| Msa0279640 | AT2G23960.2 | 42.857 | 119 | 67 | 1 | 7 | 124 | 4 | 122 | 2.77e-29 | 106 |
| Msa0279640 | AT2G23960.1 | 42.857 | 119 | 67 | 1 | 7 | 124 | 4 | 122 | 3.81e-29 | 107 |
| Msa0279640 | AT4G30550.1 | 45.098 | 102 | 56 | 0 | 6 | 107 | 6 | 107 | 6.85e-29 | 106 |
| Msa0279640 | AT4G30540.1 | 43.925 | 107 | 58 | 1 | 1 | 107 | 1 | 105 | 1.63e-28 | 105 |
Find 22 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGACATGGAGGTTGTTA+TGG | 0.340928 | 2_3:+13677980 | Msa0279640:CDS |
| AAAATCCTTGGCATTTGCTT+TGG | 0.371037 | 2_3:+13678202 | Msa0279640:CDS |
| TGGCATTTGCTTTGGCCACC+AGG | 0.426626 | 2_3:+13678210 | Msa0279640:CDS |
| GATGATGTTCATTTCTATGA+TGG | 0.435255 | 2_3:+13678082 | Msa0279640:CDS |
| TTGATGAATCCAAGGGTCAT+TGG | 0.467310 | 2_3:-13678140 | None:intergenic |
| CTTTGTCTCACATTTCTGAA+AGG | 0.513703 | 2_3:+13679570 | Msa0279640:CDS |
| ATGCACATGCCAATGACCCT+TGG | 0.523318 | 2_3:+13678131 | Msa0279640:CDS |
| TAGAAAGAGTGAGGAAGAAG+AGG | 0.525905 | 2_3:+13677915 | Msa0279640:CDS |
| TGCTTCGGATGTAAAGATGA+AGG | 0.533024 | 2_3:+13679509 | Msa0279640:CDS |
| AAGAGATGTTAGAAAGAGTG+AGG | 0.535943 | 2_3:+13677906 | None:intergenic |
| GAATATTTGTTGAAAAGACA+TGG | 0.539899 | 2_3:+13677968 | Msa0279640:CDS |
| AAATGAACATCATCGTCCTC+AGG | 0.539952 | 2_3:-13678073 | None:intergenic |
| GTGAGGAGTTGATGAATCCA+AGG | 0.557820 | 2_3:-13678148 | None:intergenic |
| GGCTGAGGAAGGAGAAACAT+GGG | 0.587236 | 2_3:+13678021 | Msa0279640:CDS |
| GAGATCCAGACACAGAGGCA+TGG | 0.621789 | 2_3:+13679541 | Msa0279640:CDS |
| TGGCTGAGGAAGGAGAAACA+TGG | 0.647270 | 2_3:+13678020 | Msa0279640:CDS |
| TGTTAATGAAGAGTTTCCTG+AGG | 0.653611 | 2_3:+13678057 | Msa0279640:CDS |
| GGTGGCCAAAGCAAATGCCA+AGG | 0.653984 | 2_3:-13678207 | None:intergenic |
| TCAATGTGTGAACAAGAGTG+AGG | 0.661343 | 2_3:-13678165 | None:intergenic |
| TGAGGAGTTGATGAATCCAA+GGG | 0.672228 | 2_3:-13678147 | None:intergenic |
| TATTTGTTGAAAAGACATGG+AGG | 0.690658 | 2_3:+13677971 | Msa0279640:CDS |
| ATTACGAGATCCAGACACAG+AGG | 0.767805 | 2_3:+13679536 | Msa0279640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATACTTATATAAGTT+CGG | + | chr2_3:13678358-13678377 | Msa0279640:intron | 10.0% |
| !! | CATAATATATAATATATGAT+TGG | + | chr2_3:13678602-13678621 | Msa0279640:intron | 10.0% |
| !! | AAAATATACTTATATAAGTT+CGG | + | chr2_3:13678358-13678377 | Msa0279640:intron | 10.0% |
| !! | CATAATATATAATATATGAT+TGG | + | chr2_3:13678602-13678621 | Msa0279640:intron | 10.0% |
| !! | AAATATACTTATATAAGTTC+GGG | + | chr2_3:13678359-13678378 | Msa0279640:intron | 15.0% |
| !! | AATAACTATGAACTAATTAA+TGG | + | chr2_3:13678501-13678520 | Msa0279640:intron | 15.0% |
| !! | GCAAATAAAACTTATAAATA+AGG | - | chr2_3:13679097-13679116 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr2_3:13679252-13679271 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr2_3:13679251-13679270 | Msa0279640:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr2_3:13679275-13679294 | Msa0279640:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr2_3:13679378-13679397 | Msa0279640:intron | 15.0% |
| !! | AAATATACTTATATAAGTTC+GGG | + | chr2_3:13678359-13678378 | Msa0279640:intron | 15.0% |
| !! | AATAACTATGAACTAATTAA+TGG | + | chr2_3:13678501-13678520 | Msa0279640:intron | 15.0% |
| !! | GCAAATAAAACTTATAAATA+AGG | - | chr2_3:13679097-13679116 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr2_3:13679252-13679271 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr2_3:13679251-13679270 | Msa0279640:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr2_3:13679275-13679294 | Msa0279640:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr2_3:13679378-13679397 | Msa0279640:intron | 15.0% |
| !! | AGTATTACTTAATTATTACC+TGG | - | chr2_3:13678231-13678250 | None:intergenic | 20.0% |
| !! | TGTTTAACAAGAAAAATGAT+AGG | + | chr2_3:13678290-13678309 | Msa0279640:intron | 20.0% |
| !! | TATAAATAAGGACAAAGATA+AGG | - | chr2_3:13679085-13679104 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr2_3:13679261-13679280 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr2_3:13679338-13679357 | Msa0279640:intron | 20.0% |
| !! | AGTATTACTTAATTATTACC+TGG | - | chr2_3:13678231-13678250 | None:intergenic | 20.0% |
| !! | TGTTTAACAAGAAAAATGAT+AGG | + | chr2_3:13678290-13678309 | Msa0279640:intron | 20.0% |
| !! | TATAAATAAGGACAAAGATA+AGG | - | chr2_3:13679085-13679104 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr2_3:13679261-13679280 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr2_3:13679338-13679357 | Msa0279640:intron | 20.0% |
| !! | GAATATTTGTTGAAAAGACA+TGG | + | chr2_3:13677968-13677987 | Msa0279640:CDS | 25.0% |
| ! | ATTACTTAATTATTACCTGG+TGG | - | chr2_3:13678228-13678247 | None:intergenic | 25.0% |
| !! | TAATGGTGTGATTGAATTTT+AGG | + | chr2_3:13678518-13678537 | Msa0279640:intron | 25.0% |
| ! | AAAATTGATATGTGACAAGA+AGG | - | chr2_3:13678555-13678574 | None:intergenic | 25.0% |
| ! | AAAATCTATACGTCTATAAG+TGG | + | chr2_3:13678872-13678891 | Msa0279640:intron | 25.0% |
| !!! | GACAAAAGAGTATTAATATG+TGG | + | chr2_3:13679462-13679481 | Msa0279640:intron | 25.0% |
| ! | AGTATTAATATGTGGATGTT+TGG | + | chr2_3:13679470-13679489 | Msa0279640:intron | 25.0% |
| !! | GAATATTTGTTGAAAAGACA+TGG | + | chr2_3:13677968-13677987 | Msa0279640:CDS | 25.0% |
| ! | ATTACTTAATTATTACCTGG+TGG | - | chr2_3:13678228-13678247 | None:intergenic | 25.0% |
| !! | TAATGGTGTGATTGAATTTT+AGG | + | chr2_3:13678518-13678537 | Msa0279640:intron | 25.0% |
| ! | AAAATTGATATGTGACAAGA+AGG | - | chr2_3:13678555-13678574 | None:intergenic | 25.0% |
| ! | AAAATCTATACGTCTATAAG+TGG | + | chr2_3:13678872-13678891 | Msa0279640:intron | 25.0% |
| !!! | GACAAAAGAGTATTAATATG+TGG | + | chr2_3:13679462-13679481 | Msa0279640:intron | 25.0% |
| ! | AGTATTAATATGTGGATGTT+TGG | + | chr2_3:13679470-13679489 | Msa0279640:intron | 25.0% |
| !! | AGGTATGCAATTTTAATGTG+TGG | + | chr2_3:13677935-13677954 | Msa0279640:CDS | 30.0% |
| ! | TATTTGTTGAAAAGACATGG+AGG | + | chr2_3:13677971-13677990 | Msa0279640:CDS | 30.0% |
| TGGTTTCTTCACAAAAATGT+TGG | + | chr2_3:13678000-13678019 | Msa0279640:CDS | 30.0% | |
| GATGATGTTCATTTCTATGA+TGG | + | chr2_3:13678082-13678101 | Msa0279640:CDS | 30.0% | |
| AATTCTATCACGCCTTAATT+AGG | + | chr2_3:13678659-13678678 | Msa0279640:intron | 30.0% | |
| ATGTGCAATTGACCTAATTA+AGG | - | chr2_3:13678674-13678693 | None:intergenic | 30.0% | |
| AAATCAGAAGATTTGATCCA+TGG | + | chr2_3:13678916-13678935 | Msa0279640:intron | 30.0% | |
| ! | TATATTGCTCTTGTTTGAGT+TGG | - | chr2_3:13679137-13679156 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr2_3:13679169-13679188 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr2_3:13679170-13679189 | Msa0279640:intron | 30.0% |
| !! | AGGTATGCAATTTTAATGTG+TGG | + | chr2_3:13677935-13677954 | Msa0279640:CDS | 30.0% |
| ! | TATTTGTTGAAAAGACATGG+AGG | + | chr2_3:13677971-13677990 | Msa0279640:CDS | 30.0% |
| TGGTTTCTTCACAAAAATGT+TGG | + | chr2_3:13678000-13678019 | Msa0279640:CDS | 30.0% | |
| GATGATGTTCATTTCTATGA+TGG | + | chr2_3:13678082-13678101 | Msa0279640:CDS | 30.0% | |
| AATTCTATCACGCCTTAATT+AGG | + | chr2_3:13678659-13678678 | Msa0279640:intron | 30.0% | |
| ATGTGCAATTGACCTAATTA+AGG | - | chr2_3:13678674-13678693 | None:intergenic | 30.0% | |
| AAATCAGAAGATTTGATCCA+TGG | + | chr2_3:13678916-13678935 | Msa0279640:intron | 30.0% | |
| ! | TATATTGCTCTTGTTTGAGT+TGG | - | chr2_3:13679137-13679156 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr2_3:13679169-13679188 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr2_3:13679170-13679189 | Msa0279640:intron | 30.0% |
| !! | TGCAATTTTAATGTGTGGAG+AGG | + | chr2_3:13677940-13677959 | Msa0279640:CDS | 35.0% |
| AAAAGACATGGAGGTTGTTA+TGG | + | chr2_3:13677980-13677999 | Msa0279640:CDS | 35.0% | |
| TGTTAATGAAGAGTTTCCTG+AGG | + | chr2_3:13678057-13678076 | Msa0279640:CDS | 35.0% | |
| !!! | TATGATGGTTTTGTCATCAC+TGG | + | chr2_3:13678097-13678116 | Msa0279640:CDS | 35.0% |
| TCCCTCAACAAAAAAATCCT+TGG | + | chr2_3:13678190-13678209 | Msa0279640:CDS | 35.0% | |
| !!! | GCCAAGGATTTTTTTGTTGA+GGG | - | chr2_3:13678194-13678213 | None:intergenic | 35.0% |
| !!! | TGCCAAGGATTTTTTTGTTG+AGG | - | chr2_3:13678195-13678214 | None:intergenic | 35.0% |
| AAAATCCTTGGCATTTGCTT+TGG | + | chr2_3:13678202-13678221 | Msa0279640:CDS | 35.0% | |
| AAGAATAAGAGACACGAAGA+TGG | + | chr2_3:13678419-13678438 | Msa0279640:intron | 35.0% | |
| AGAAGATTTGATCCATGGAA+TGG | + | chr2_3:13678921-13678940 | Msa0279640:intron | 35.0% | |
| GAAGATTTGATCCATGGAAT+GGG | + | chr2_3:13678922-13678941 | Msa0279640:intron | 35.0% | |
| ! | ATCGTGTGCAGAGTATTAAT+TGG | + | chr2_3:13679300-13679319 | Msa0279640:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr2_3:13679304-13679323 | Msa0279640:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr2_3:13679368-13679387 | Msa0279640:intron | 35.0% |
| CTTTGTCTCACATTTCTGAA+AGG | + | chr2_3:13679570-13679589 | Msa0279640:CDS | 35.0% | |
| !! | TGCAATTTTAATGTGTGGAG+AGG | + | chr2_3:13677940-13677959 | Msa0279640:CDS | 35.0% |
| AAAAGACATGGAGGTTGTTA+TGG | + | chr2_3:13677980-13677999 | Msa0279640:CDS | 35.0% | |
| TGTTAATGAAGAGTTTCCTG+AGG | + | chr2_3:13678057-13678076 | Msa0279640:CDS | 35.0% | |
| !!! | TATGATGGTTTTGTCATCAC+TGG | + | chr2_3:13678097-13678116 | Msa0279640:CDS | 35.0% |
| TCCCTCAACAAAAAAATCCT+TGG | + | chr2_3:13678190-13678209 | Msa0279640:CDS | 35.0% | |
| !!! | GCCAAGGATTTTTTTGTTGA+GGG | - | chr2_3:13678194-13678213 | None:intergenic | 35.0% |
| !!! | TGCCAAGGATTTTTTTGTTG+AGG | - | chr2_3:13678195-13678214 | None:intergenic | 35.0% |
| AAAATCCTTGGCATTTGCTT+TGG | + | chr2_3:13678202-13678221 | Msa0279640:CDS | 35.0% | |
| AAGAATAAGAGACACGAAGA+TGG | + | chr2_3:13678419-13678438 | Msa0279640:intron | 35.0% | |
| AGAAGATTTGATCCATGGAA+TGG | + | chr2_3:13678921-13678940 | Msa0279640:intron | 35.0% | |
| GAAGATTTGATCCATGGAAT+GGG | + | chr2_3:13678922-13678941 | Msa0279640:intron | 35.0% | |
| ! | ATCGTGTGCAGAGTATTAAT+TGG | + | chr2_3:13679300-13679319 | Msa0279640:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr2_3:13679304-13679323 | Msa0279640:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr2_3:13679368-13679387 | Msa0279640:intron | 35.0% |
| CTTTGTCTCACATTTCTGAA+AGG | + | chr2_3:13679570-13679589 | Msa0279640:CDS | 35.0% | |
| TAGAAAGAGTGAGGAAGAAG+AGG | + | chr2_3:13677915-13677934 | Msa0279640:CDS | 40.0% | |
| ! | CTTCACAAAAATGTTGGCTG+AGG | + | chr2_3:13678006-13678025 | Msa0279640:CDS | 40.0% |
| ! | ACAAAAATGTTGGCTGAGGA+AGG | + | chr2_3:13678010-13678029 | Msa0279640:CDS | 40.0% |
| AAATGAACATCATCGTCCTC+AGG | - | chr2_3:13678076-13678095 | None:intergenic | 40.0% | |
| TTGATGAATCCAAGGGTCAT+TGG | - | chr2_3:13678143-13678162 | None:intergenic | 40.0% | |
| !! | TGAGGAGTTGATGAATCCAA+GGG | - | chr2_3:13678150-13678169 | None:intergenic | 40.0% |
| TCAATGTGTGAACAAGAGTG+AGG | - | chr2_3:13678168-13678187 | None:intergenic | 40.0% | |
| AGGCATACATCACAAAGCAA+GGG | - | chr2_3:13679065-13679084 | None:intergenic | 40.0% | |
| AAGGCATACATCACAAAGCA+AGG | - | chr2_3:13679066-13679085 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr2_3:13679408-13679427 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr2_3:13679303-13679322 | Msa0279640:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr2_3:13679408-13679427 | Msa0279640:intron | 40.0% |
| ! | ATGTGGATGTTTGGAATTGC+AGG | + | chr2_3:13679479-13679498 | Msa0279640:intron | 40.0% |
| ! | ATTGCAGGAAGCTTTTGCTT+CGG | + | chr2_3:13679494-13679513 | Msa0279640:intron | 40.0% |
| TGCTTCGGATGTAAAGATGA+AGG | + | chr2_3:13679509-13679528 | Msa0279640:CDS | 40.0% | |
| TAGAAAGAGTGAGGAAGAAG+AGG | + | chr2_3:13677915-13677934 | Msa0279640:CDS | 40.0% | |
| ! | CTTCACAAAAATGTTGGCTG+AGG | + | chr2_3:13678006-13678025 | Msa0279640:CDS | 40.0% |
| ! | ACAAAAATGTTGGCTGAGGA+AGG | + | chr2_3:13678010-13678029 | Msa0279640:CDS | 40.0% |
| AAATGAACATCATCGTCCTC+AGG | - | chr2_3:13678076-13678095 | None:intergenic | 40.0% | |
| TTGATGAATCCAAGGGTCAT+TGG | - | chr2_3:13678143-13678162 | None:intergenic | 40.0% | |
| !! | TGAGGAGTTGATGAATCCAA+GGG | - | chr2_3:13678150-13678169 | None:intergenic | 40.0% |
| TCAATGTGTGAACAAGAGTG+AGG | - | chr2_3:13678168-13678187 | None:intergenic | 40.0% | |
| AGGCATACATCACAAAGCAA+GGG | - | chr2_3:13679065-13679084 | None:intergenic | 40.0% | |
| AAGGCATACATCACAAAGCA+AGG | - | chr2_3:13679066-13679085 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr2_3:13679408-13679427 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr2_3:13679303-13679322 | Msa0279640:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr2_3:13679408-13679427 | Msa0279640:intron | 40.0% |
| ! | ATGTGGATGTTTGGAATTGC+AGG | + | chr2_3:13679479-13679498 | Msa0279640:intron | 40.0% |
| ! | ATTGCAGGAAGCTTTTGCTT+CGG | + | chr2_3:13679494-13679513 | Msa0279640:intron | 40.0% |
| TGCTTCGGATGTAAAGATGA+AGG | + | chr2_3:13679509-13679528 | Msa0279640:CDS | 40.0% | |
| !! | GTGAGGAGTTGATGAATCCA+AGG | - | chr2_3:13678151-13678170 | None:intergenic | 45.0% |
| CAGATTCTGATCCCATTCCA+TGG | - | chr2_3:13678936-13678955 | None:intergenic | 45.0% | |
| CATGGAATGGGATCAGAATC+TGG | + | chr2_3:13678934-13678953 | Msa0279640:intron | 45.0% | |
| CATCACAAAGCAAGGGGATA+AGG | - | chr2_3:13679058-13679077 | None:intergenic | 45.0% | |
| GGCATACATCACAAAGCAAG+GGG | - | chr2_3:13679064-13679083 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr2_3:13679407-13679426 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr2_3:13679407-13679426 | Msa0279640:intron | 45.0% |
| ATTACGAGATCCAGACACAG+AGG | + | chr2_3:13679536-13679555 | Msa0279640:CDS | 45.0% | |
| !! | GTGAGGAGTTGATGAATCCA+AGG | - | chr2_3:13678151-13678170 | None:intergenic | 45.0% |
| CAGATTCTGATCCCATTCCA+TGG | - | chr2_3:13678936-13678955 | None:intergenic | 45.0% | |
| CATGGAATGGGATCAGAATC+TGG | + | chr2_3:13678934-13678953 | Msa0279640:intron | 45.0% | |
| CATCACAAAGCAAGGGGATA+AGG | - | chr2_3:13679058-13679077 | None:intergenic | 45.0% | |
| GGCATACATCACAAAGCAAG+GGG | - | chr2_3:13679064-13679083 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr2_3:13679407-13679426 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr2_3:13679407-13679426 | Msa0279640:intron | 45.0% |
| ATTACGAGATCCAGACACAG+AGG | + | chr2_3:13679536-13679555 | Msa0279640:CDS | 45.0% | |
| TGGCTGAGGAAGGAGAAACA+TGG | + | chr2_3:13678020-13678039 | Msa0279640:CDS | 50.0% | |
| GGCTGAGGAAGGAGAAACAT+GGG | + | chr2_3:13678021-13678040 | Msa0279640:CDS | 50.0% | |
| ATGCACATGCCAATGACCCT+TGG | + | chr2_3:13678131-13678150 | Msa0279640:CDS | 50.0% | |
| GTGACTCATTGTACTGCACG+TGG | - | chr2_3:13678982-13679001 | None:intergenic | 50.0% | |
| ! | GTTTTCCATGCCTCTGTGTC+TGG | - | chr2_3:13679549-13679568 | None:intergenic | 50.0% |
| TGGCTGAGGAAGGAGAAACA+TGG | + | chr2_3:13678020-13678039 | Msa0279640:CDS | 50.0% | |
| GGCTGAGGAAGGAGAAACAT+GGG | + | chr2_3:13678021-13678040 | Msa0279640:CDS | 50.0% | |
| ATGCACATGCCAATGACCCT+TGG | + | chr2_3:13678131-13678150 | Msa0279640:CDS | 50.0% | |
| GTGACTCATTGTACTGCACG+TGG | - | chr2_3:13678982-13679001 | None:intergenic | 50.0% | |
| ! | GTTTTCCATGCCTCTGTGTC+TGG | - | chr2_3:13679549-13679568 | None:intergenic | 50.0% |
| GGTGGCCAAAGCAAATGCCA+AGG | - | chr2_3:13678210-13678229 | None:intergenic | 55.0% | |
| TGGCATTTGCTTTGGCCACC+AGG | + | chr2_3:13678210-13678229 | Msa0279640:CDS | 55.0% | |
| GAGATCCAGACACAGAGGCA+TGG | + | chr2_3:13679541-13679560 | Msa0279640:CDS | 55.0% | |
| GGTGGCCAAAGCAAATGCCA+AGG | - | chr2_3:13678210-13678229 | None:intergenic | 55.0% | |
| TGGCATTTGCTTTGGCCACC+AGG | + | chr2_3:13678210-13678229 | Msa0279640:CDS | 55.0% | |
| GAGATCCAGACACAGAGGCA+TGG | + | chr2_3:13679541-13679560 | Msa0279640:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 13677911 | 13679602 | 13677911 | ID=Msa0279640;Name=Msa0279640 |
| chr2_3 | mRNA | 13677911 | 13679602 | 13677911 | ID=Msa0279640-mRNA-1;Parent=Msa0279640;Name=Msa0279640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|140 |
| chr2_3 | exon | 13677911 | 13678231 | 13677911 | ID=Msa0279640-mRNA-1:exon:5778;Parent=Msa0279640-mRNA-1 |
| chr2_3 | exon | 13679501 | 13679602 | 13679501 | ID=Msa0279640-mRNA-1:exon:5779;Parent=Msa0279640-mRNA-1 |
| chr2_3 | CDS | 13677911 | 13678231 | 13677911 | ID=Msa0279640-mRNA-1:cds;Parent=Msa0279640-mRNA-1 |
| chr2_3 | CDS | 13679501 | 13679602 | 13679501 | ID=Msa0279640-mRNA-1:cds;Parent=Msa0279640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
