Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280210 | XP_003594689.1 | 93.537 | 294 | 18 | 1 | 1 | 293 | 1 | 294 | 1.53e-161 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280210 | sp|Q0VMF9|RS6_ALCBS | 43.564 | 101 | 57 | 0 | 132 | 232 | 1 | 101 | 5.35e-25 | 99.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280210 | A2Q664 | 93.537 | 294 | 18 | 1 | 1 | 293 | 1 | 294 | 7.32e-162 | 461 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0091480 | Msa0280210 | 0.802461 | 5.548412e-49 | -8.615850e-47 |
| Msa0170580 | Msa0280210 | 0.809004 | 2.344523e-50 | -8.615850e-47 |
| Msa0208630 | Msa0280210 | 0.815093 | 1.102745e-51 | -8.615850e-47 |
| Msa0265820 | Msa0280210 | 0.808502 | 3.000685e-50 | -8.615850e-47 |
| Msa0280210 | Msa0380310 | 0.820078 | 8.293846e-53 | -8.615850e-47 |
| Msa0280210 | Msa1000910 | 0.857571 | 1.490668e-62 | -8.615850e-47 |
| Msa0280210 | Msa1280130 | 0.803990 | 2.677357e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280210 | MtrunA17_Chr2g0294021 | 93.537 | 294 | 18 | 1 | 1 | 293 | 1 | 294 | 1.41e-165 | 461 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0280210 | AT3G17170.1 | 57.202 | 243 | 90 | 3 | 1 | 242 | 1 | 230 | 1.20e-88 | 267 |
Find 61 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTCTTATCTTTCTTTC+GGG | 0.136122 | 2_3:+14655104 | None:intergenic |
| TGAATCTGTTCTTCTTAAAA+AGG | 0.188788 | 2_3:-14655031 | Msa0280210:intron |
| CAGTTTCCACGTCAAGCTTT+AGG | 0.189454 | 2_3:+14653734 | None:intergenic |
| CTTCTTTCTTATCTTTCTTT+CGG | 0.224970 | 2_3:+14655103 | None:intergenic |
| GCCAGTGCTTTCATCTGATT+TGG | 0.244957 | 2_3:+14655062 | None:intergenic |
| ATTATGGCTTTACATATATA+TGG | 0.263347 | 2_3:-14652123 | Msa0280210:three_prime_UTR |
| CGAGCAATTAAACAAGAAAT+TGG | 0.265794 | 2_3:+14652084 | None:intergenic |
| TCTTCATTTCCTCTTAACTA+TGG | 0.281522 | 2_3:-14655310 | Msa0280210:exon |
| TATCGTAGACGACGATGATT+TGG | 0.299249 | 2_3:-14652287 | Msa0280210:CDS |
| GATGAAGAAAGGTAGTGATT+TGG | 0.311635 | 2_3:+14655195 | None:intergenic |
| AGTTTCCACGTCAAGCTTTA+GGG | 0.316767 | 2_3:+14653735 | None:intergenic |
| TAAAGCAGTTCTGAACATTA+TGG | 0.317951 | 2_3:-14652139 | Msa0280210:three_prime_UTR |
| ATGAAGAAAGGTAGTGATTT+GGG | 0.318693 | 2_3:+14655196 | None:intergenic |
| GGGAGAAGAAAGGAAGAGTA+TGG | 0.343212 | 2_3:-14652636 | Msa0280210:CDS |
| GCTTGACGTGGAAACTGATA+TGG | 0.365705 | 2_3:-14653728 | Msa0280210:CDS |
| CAACGAGTTCAAGACTTTGT+TGG | 0.383716 | 2_3:-14652512 | Msa0280210:CDS |
| CCAGTGCTTTCATCTGATTT+GGG | 0.387549 | 2_3:+14655063 | None:intergenic |
| CTTCGTCCCTCTTTATCACT+AGG | 0.396913 | 2_3:+14652464 | None:intergenic |
| AATTGAGAATGTAGGTAGAT+AGG | 0.403197 | 2_3:-14652224 | Msa0280210:three_prime_UTR |
| GGAAGATGGTAAAATTCTTC+CGG | 0.409818 | 2_3:-14653908 | Msa0280210:CDS |
| AGTATGGAGATTCAGTGATT+GGG | 0.412799 | 2_3:-14652620 | Msa0280210:CDS |
| GAGTATGGAGATTCAGTGAT+TGG | 0.428387 | 2_3:-14652621 | Msa0280210:CDS |
| CAGAAGACAGTTGAGGAAGA+TGG | 0.433743 | 2_3:-14653922 | Msa0280210:CDS |
| GCTGTTAATGAGAAAGTTCA+AGG | 0.436751 | 2_3:-14653153 | Msa0280210:intron |
| AAGAAGAATTTGATGATGAA+TGG | 0.453384 | 2_3:-14652378 | Msa0280210:CDS |
| GATGATATTGAGGGCGGTGA+AGG | 0.481025 | 2_3:-14652316 | Msa0280210:CDS |
| GTATTAAACTCGGGAGGAGG+AGG | 0.481879 | 2_3:+14652424 | None:intergenic |
| AGAAGAATTTGATGATGAAT+GGG | 0.503389 | 2_3:-14652377 | Msa0280210:CDS |
| TTGGGAAGTTGAAACGAAGA+GGG | 0.515458 | 2_3:+14655214 | None:intergenic |
| ATCTGATTATGATGATATTG+AGG | 0.526841 | 2_3:-14652326 | Msa0280210:CDS |
| TTCGACACCTAGTGATAAAG+AGG | 0.527803 | 2_3:-14652471 | Msa0280210:CDS |
| ATAGTGCCTCCATAGTTAAG+AGG | 0.528621 | 2_3:+14655301 | None:intergenic |
| TCATCATCATCTTCAAACTC+CGG | 0.543493 | 2_3:+14653889 | None:intergenic |
| GTTTGATGCTAACATGGCAG+TGG | 0.545412 | 2_3:+14655236 | None:intergenic |
| TCATGAGAAACATGCAGAAG+AGG | 0.554875 | 2_3:-14653181 | Msa0280210:CDS |
| TATGATGAAGATGAGGAAGA+TGG | 0.559348 | 2_3:-14652349 | Msa0280210:CDS |
| GGCCAGAAAATAGCATAATG+AGG | 0.562440 | 2_3:-14652253 | Msa0280210:exon |
| GGGTTGAGAATTGAGAATGT+AGG | 0.565136 | 2_3:-14652232 | Msa0280210:three_prime_UTR |
| GTATGGAGATTCAGTGATTG+GGG | 0.567959 | 2_3:-14652619 | Msa0280210:CDS |
| AAAGTATTAAACTCGGGAGG+AGG | 0.569590 | 2_3:+14652421 | None:intergenic |
| ACTATGGAGGCACTATTCAA+AGG | 0.569896 | 2_3:-14655294 | Msa0280210:CDS |
| TCATTTCCTCTTAACTATGG+AGG | 0.570801 | 2_3:-14655307 | Msa0280210:exon |
| CCCAAATCAGATGAAAGCAC+TGG | 0.572848 | 2_3:-14655063 | Msa0280210:CDS |
| TCTGATTATGATGATATTGA+GGG | 0.573289 | 2_3:-14652325 | Msa0280210:CDS |
| AGCAACAAAAGTATTAAACT+CGG | 0.581584 | 2_3:+14652414 | None:intergenic |
| TGATTGGGGTATGAGAAAGT+TGG | 0.581664 | 2_3:-14652605 | Msa0280210:CDS |
| TCAAGTAAACAATCTCATAG+TGG | 0.585631 | 2_3:+14653205 | None:intergenic |
| AAAACGATGAGGATGAAGAA+AGG | 0.586135 | 2_3:+14655184 | None:intergenic |
| AAGAGGGTTTGATGCTAACA+TGG | 0.587929 | 2_3:+14655230 | None:intergenic |
| CGATGATTTGGAAATATCAG+AGG | 0.611516 | 2_3:-14652275 | Msa0280210:CDS |
| GCAACAAAAGTATTAAACTC+GGG | 0.611767 | 2_3:+14652415 | None:intergenic |
| TTTGGGAAGTTGAAACGAAG+AGG | 0.620047 | 2_3:+14655213 | None:intergenic |
| TATTAAACTCGGGAGGAGGA+GGG | 0.622797 | 2_3:+14652425 | None:intergenic |
| GCCAGAAAATAGCATAATGA+GGG | 0.628129 | 2_3:-14652252 | Msa0280210:exon |
| TGAATCCCTAAAGCTTGACG+TGG | 0.629748 | 2_3:-14653740 | Msa0280210:CDS |
| GATGATTTGGAAATATCAGA+GGG | 0.634837 | 2_3:-14652274 | Msa0280210:CDS |
| GGATGAATATGATGAAGATG+AGG | 0.661571 | 2_3:-14652356 | Msa0280210:CDS |
| ACAAAAGTATTAAACTCGGG+AGG | 0.675886 | 2_3:+14652418 | None:intergenic |
| TCGACACCTAGTGATAAAGA+GGG | 0.685347 | 2_3:-14652470 | Msa0280210:CDS |
| AAATTGGCGTGAAAACGATG+AGG | 0.721233 | 2_3:+14655173 | None:intergenic |
| GATTATGATGATATTGAGGG+CGG | 0.728969 | 2_3:-14652322 | Msa0280210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACAAAAATCAAATAAA+GGG | + | chr2_3:14652394-14652413 | None:intergenic | 10.0% |
| !! | AATAAACAAAAATCAAATAA+AGG | + | chr2_3:14652395-14652414 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr2_3:14652838-14652857 | Msa0280210:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr2_3:14652839-14652858 | Msa0280210:intron | 10.0% |
| !! | CAAATAAAAAAAATTATTAG+AGG | + | chr2_3:14654051-14654070 | None:intergenic | 10.0% |
| !! | TTGAGTTTATACTTATAAAT+TGG | - | chr2_3:14652488-14652507 | Msa0280210:CDS | 15.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | chr2_3:14652803-14652822 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr2_3:14652840-14652859 | Msa0280210:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr2_3:14652903-14652922 | Msa0280210:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr2_3:14652904-14652923 | Msa0280210:intron | 15.0% |
| !!! | TCAAGTTAAAATGATTTTTT+TGG | + | chr2_3:14654641-14654660 | None:intergenic | 15.0% |
| !! | AACTCAATAAATCTTCAAAA+GGG | + | chr2_3:14652475-14652494 | None:intergenic | 20.0% |
| !! | AAACTCAATAAATCTTCAAA+AGG | + | chr2_3:14652476-14652495 | None:intergenic | 20.0% |
| !! | GTATACCAAAATAAATTTGA+GGG | + | chr2_3:14652528-14652547 | None:intergenic | 20.0% |
| !! | AGTATACCAAAATAAATTTG+AGG | + | chr2_3:14652529-14652548 | None:intergenic | 20.0% |
| !!! | TAATTTCTGATAGTTTTCAT+TGG | - | chr2_3:14652562-14652581 | Msa0280210:CDS | 20.0% |
| !! | ATTCTAATGAATCTTCAAAA+GGG | + | chr2_3:14652608-14652627 | None:intergenic | 20.0% |
| !! | AATTCTAATGAATCTTCAAA+AGG | + | chr2_3:14652609-14652628 | None:intergenic | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | chr2_3:14652804-14652823 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr2_3:14652863-14652882 | Msa0280210:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr2_3:14652936-14652955 | Msa0280210:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr2_3:14652937-14652956 | Msa0280210:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr2_3:14652973-14652992 | Msa0280210:intron | 20.0% |
| !! | TTTCAAATTATTAACTGTGT+CGG | + | chr2_3:14653064-14653083 | None:intergenic | 20.0% |
| !!! | AAACTAAATTTTGCATACAA+GGG | + | chr2_3:14653288-14653307 | None:intergenic | 20.0% |
| !!! | AAAACTAAATTTTGCATACA+AGG | + | chr2_3:14653289-14653308 | None:intergenic | 20.0% |
| !! | TTTCTCATTGATATTCAAAT+TGG | - | chr2_3:14653417-14653436 | Msa0280210:intron | 20.0% |
| !! | TTCTCATTGATATTCAAATT+GGG | - | chr2_3:14653418-14653437 | Msa0280210:intron | 20.0% |
| !!! | TTCCATTTGTTTTAGTTTTT+TGG | - | chr2_3:14653539-14653558 | Msa0280210:intron | 20.0% |
| !! | TACCAAAAAACTAAAACAAA+TGG | + | chr2_3:14653544-14653563 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTAGTTTTTTGGT+AGG | - | chr2_3:14653543-14653562 | Msa0280210:intron | 20.0% |
| !!! | CTTTTTCCAAATTTTCATTT+TGG | - | chr2_3:14653601-14653620 | Msa0280210:intron | 20.0% |
| !! | TGTAAACCAAAATGAAAATT+TGG | + | chr2_3:14653610-14653629 | None:intergenic | 20.0% |
| !!! | GATGCAATTTTTTTATTCAT+AGG | - | chr2_3:14653738-14653757 | Msa0280210:CDS | 20.0% |
| !! | TTTGTAAACATTATCTAACA+AGG | + | chr2_3:14653849-14653868 | None:intergenic | 20.0% |
| !! | ATAGATTCGAAAAAAATGTA+AGG | + | chr2_3:14654278-14654297 | None:intergenic | 20.0% |
| !! | ATGTCACTATTGTTAAATAT+AGG | - | chr2_3:14654359-14654378 | Msa0280210:intron | 20.0% |
| !! | AATACAGAACAATAATGATT+TGG | + | chr2_3:14654414-14654433 | None:intergenic | 20.0% |
| !! | CTTTATATTCTAACGAAAAA+AGG | + | chr2_3:14655227-14655246 | None:intergenic | 20.0% |
| !!! | ATTATGGCTTTACATATATA+TGG | - | chr2_3:14655258-14655277 | Msa0280210:CDS | 20.0% |
| !!! | GGTTATTTTGAAGAGAAAAT+TGG | + | chr2_3:14652227-14652246 | None:intergenic | 25.0% |
| !! | ATAAGTGAGAATGATTTTCT+GGG | + | chr2_3:14652249-14652268 | None:intergenic | 25.0% |
| !! | AATAAGTGAGAATGATTTTC+TGG | + | chr2_3:14652250-14652269 | None:intergenic | 25.0% |
| ! | TTCTTTCTTATCTTTCTTTC+GGG | + | chr2_3:14652280-14652299 | None:intergenic | 25.0% |
| ! | CTTCTTTCTTATCTTTCTTT+CGG | + | chr2_3:14652281-14652300 | None:intergenic | 25.0% |
| !!! | TTTTAAGAAGAACAGATTCA+GGG | + | chr2_3:14652350-14652369 | None:intergenic | 25.0% |
| !!! | TTTTTAAGAAGAACAGATTC+AGG | + | chr2_3:14652351-14652370 | None:intergenic | 25.0% |
| ! | TGAATCTGTTCTTCTTAAAA+AGG | - | chr2_3:14652350-14652369 | Msa0280210:CDS | 25.0% |
| !! | AATCTTATCTTGTTCTGTTT+TGG | - | chr2_3:14652687-14652706 | Msa0280210:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr2_3:14652862-14652881 | Msa0280210:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr2_3:14652972-14652991 | Msa0280210:intron | 25.0% |
| ! | GAAAAAATGACATAATTCAG+CGG | - | chr2_3:14653080-14653099 | Msa0280210:intron | 25.0% |
| ! | TTTCTCATTGATATTCGATA+TGG | - | chr2_3:14653345-14653364 | Msa0280210:intron | 25.0% |
| ! | CAGTAACATGAAAAACTATT+TGG | - | chr2_3:14653815-14653834 | Msa0280210:intron | 25.0% |
| ! | TAAACATTATCTAACAAGGT+CGG | + | chr2_3:14653845-14653864 | None:intergenic | 25.0% |
| ! | ATTATCGTCATTATGGTTTA+GGG | + | chr2_3:14653880-14653899 | None:intergenic | 25.0% |
| ! | TCTAATGAACTCATTCTATT+TGG | + | chr2_3:14654317-14654336 | None:intergenic | 25.0% |
| ! | TAGTACAAAATGTTGTCAAA+TGG | - | chr2_3:14654442-14654461 | Msa0280210:intron | 25.0% |
| ! | TTTAATAATCACCTTTGTTG+TGG | - | chr2_3:14654550-14654569 | Msa0280210:intron | 25.0% |
| ! | AATAATTGTATCCACAACAA+AGG | + | chr2_3:14654564-14654583 | None:intergenic | 25.0% |
| ! | AAACATACTTCTGATTATTC+TGG | - | chr2_3:14654677-14654696 | Msa0280210:intron | 25.0% |
| !!! | AGCAACAAAAGTATTAAACT+CGG | + | chr2_3:14654970-14654989 | None:intergenic | 25.0% |
| !!! | AAGAAGAATTTGATGATGAA+TGG | - | chr2_3:14655003-14655022 | Msa0280210:intron | 25.0% |
| !!! | AGAAGAATTTGATGATGAAT+GGG | - | chr2_3:14655004-14655023 | Msa0280210:intron | 25.0% |
| ! | ATCTGATTATGATGATATTG+AGG | - | chr2_3:14655055-14655074 | Msa0280210:CDS | 25.0% |
| ! | TCTGATTATGATGATATTGA+GGG | - | chr2_3:14655056-14655075 | Msa0280210:CDS | 25.0% |
| TCTTCATTTCCTCTTAACTA+TGG | - | chr2_3:14652071-14652090 | Msa0280210:three_prime_UTR | 30.0% | |
| ATGAAGAAAGGTAGTGATTT+GGG | + | chr2_3:14652188-14652207 | None:intergenic | 30.0% | |
| ! | TAAGTGAGAATGATTTTCTG+GGG | + | chr2_3:14652248-14652267 | None:intergenic | 30.0% |
| ! | CAATGCCCTCAAATTTATTT+TGG | - | chr2_3:14652520-14652539 | Msa0280210:CDS | 30.0% |
| !!! | TTGTTCTGTTTTGGTTTGAA+GGG | - | chr2_3:14652696-14652715 | Msa0280210:intron | 30.0% |
| TTGTGTCAATTAAATTGGGA+CGG | + | chr2_3:14652799-14652818 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr2_3:14652847-14652866 | Msa0280210:intron | 30.0% | |
| !! | TGAAATGGGTCAGTTATTTT+AGG | - | chr2_3:14652951-14652970 | Msa0280210:intron | 30.0% |
| ! | ATTTGACATTAGAGAAGTGT+AGG | - | chr2_3:14653187-14653206 | Msa0280210:CDS | 30.0% |
| !!! | TAGTTTTTTGGTAGGCTAAA+TGG | - | chr2_3:14653551-14653570 | Msa0280210:intron | 30.0% |
| GATTATCGTCATTATGGTTT+AGG | + | chr2_3:14653881-14653900 | None:intergenic | 30.0% | |
| CATCTAGATTATCGTCATTA+TGG | + | chr2_3:14653887-14653906 | None:intergenic | 30.0% | |
| ! | ATCCATCTTTTGCTAACTTT+TGG | - | chr2_3:14653967-14653986 | Msa0280210:intron | 30.0% |
| CACGTTACTGAATCTTTAAA+GGG | + | chr2_3:14654115-14654134 | None:intergenic | 30.0% | |
| TCAAGTAAACAATCTCATAG+TGG | + | chr2_3:14654179-14654198 | None:intergenic | 30.0% | |
| GGTTAATTGCAATCTTTGAA+AGG | + | chr2_3:14654257-14654276 | None:intergenic | 30.0% | |
| ! | AAACATTTGCAGACTTTTTG+AGG | - | chr2_3:14654724-14654743 | Msa0280210:intron | 30.0% |
| ! | AACATTTGCAGACTTTTTGA+GGG | - | chr2_3:14654725-14654744 | Msa0280210:intron | 30.0% |
| !! | GCAACAAAAGTATTAAACTC+GGG | + | chr2_3:14654969-14654988 | None:intergenic | 30.0% |
| ! | GATGATTTGGAAATATCAGA+GGG | - | chr2_3:14655107-14655126 | Msa0280210:CDS | 30.0% |
| AATTGAGAATGTAGGTAGAT+AGG | - | chr2_3:14655157-14655176 | Msa0280210:CDS | 30.0% | |
| !! | TAAAGCAGTTCTGAACATTA+TGG | - | chr2_3:14655242-14655261 | Msa0280210:CDS | 30.0% |
| CGAGCAATTAAACAAGAAAT+TGG | + | chr2_3:14655300-14655319 | None:intergenic | 30.0% | |
| TCATTTCCTCTTAACTATGG+AGG | - | chr2_3:14652074-14652093 | Msa0280210:three_prime_UTR | 35.0% | |
| GATGAAGAAAGGTAGTGATT+TGG | + | chr2_3:14652189-14652208 | None:intergenic | 35.0% | |
| AAAACGATGAGGATGAAGAA+AGG | + | chr2_3:14652200-14652219 | None:intergenic | 35.0% | |
| CACATGTAATGTTACCACTA+AGG | - | chr2_3:14652631-14652650 | Msa0280210:CDS | 35.0% | |
| ! | TTACCACTAAGGAGTTTTCT+TGG | - | chr2_3:14652642-14652661 | Msa0280210:CDS | 35.0% |
| !!! | CTTGTTCTGTTTTGGTTTGA+AGG | - | chr2_3:14652695-14652714 | Msa0280210:intron | 35.0% |
| ATACAAATTTGCCCACTTTG+TGG | - | chr2_3:14652749-14652768 | Msa0280210:intron | 35.0% | |
| TAAGTCATACACCACAAAGT+GGG | + | chr2_3:14652763-14652782 | None:intergenic | 35.0% | |
| ATAAGTCATACACCACAAAG+TGG | + | chr2_3:14652764-14652783 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr2_3:14652986-14653005 | Msa0280210:intron | 35.0% | |
| ACATAATTCAGCGGAATCAT+AGG | - | chr2_3:14653089-14653108 | Msa0280210:intron | 35.0% | |
| ! | CTAAATTTTGCATACAAGGG+AGG | + | chr2_3:14653285-14653304 | None:intergenic | 35.0% |
| ! | TCATTTTCAGAAGACAGTTG+AGG | - | chr2_3:14653452-14653471 | Msa0280210:intron | 35.0% |
| GGAAGATGGTAAAATTCTTC+CGG | - | chr2_3:14653473-14653492 | Msa0280210:intron | 35.0% | |
| TCATCATCATCTTCAAACTC+CGG | + | chr2_3:14653495-14653514 | None:intergenic | 35.0% | |
| TGCCAAAAGTTAGCAAAAGA+TGG | + | chr2_3:14653972-14653991 | None:intergenic | 35.0% | |
| GCACGTTACTGAATCTTTAA+AGG | + | chr2_3:14654116-14654135 | None:intergenic | 35.0% | |
| GCTGTTAATGAGAAAGTTCA+AGG | - | chr2_3:14654228-14654247 | Msa0280210:intron | 35.0% | |
| ! | ATTAGATTGCCATTTCCATC+TGG | - | chr2_3:14654331-14654350 | Msa0280210:intron | 35.0% |
| TCAACTGTATTGCCAAATTG+CGG | + | chr2_3:14654500-14654519 | None:intergenic | 35.0% | |
| AGTATGGAGATTCAGTGATT+GGG | - | chr2_3:14654761-14654780 | Msa0280210:intron | 35.0% | |
| !! | CATTTTGATGAACTTCGAGA+TGG | - | chr2_3:14654833-14654852 | Msa0280210:intron | 35.0% |
| !! | ACAAAAGTATTAAACTCGGG+AGG | + | chr2_3:14654966-14654985 | None:intergenic | 35.0% |
| GGATGAATATGATGAAGATG+AGG | - | chr2_3:14655025-14655044 | Msa0280210:intron | 35.0% | |
| TATGATGAAGATGAGGAAGA+TGG | - | chr2_3:14655032-14655051 | Msa0280210:CDS | 35.0% | |
| GATTATGATGATATTGAGGG+CGG | - | chr2_3:14655059-14655078 | Msa0280210:CDS | 35.0% | |
| ! | CGATGATTTGGAAATATCAG+AGG | - | chr2_3:14655106-14655125 | Msa0280210:CDS | 35.0% |
| GCCAGAAAATAGCATAATGA+GGG | - | chr2_3:14655129-14655148 | Msa0280210:CDS | 35.0% | |
| !!! | ACCCTCATTATGCTATTTTC+TGG | + | chr2_3:14655133-14655152 | None:intergenic | 35.0% |
| ATAGTGCCTCCATAGTTAAG+AGG | + | chr2_3:14652083-14652102 | None:intergenic | 40.0% | |
| !! | ACTATGGAGGCACTATTCAA+AGG | - | chr2_3:14652087-14652106 | Msa0280210:three_prime_UTR | 40.0% |
| !! | GTGGTTTTTGGAGGTTTAGA+AGG | + | chr2_3:14652129-14652148 | None:intergenic | 40.0% |
| AAGAGGGTTTGATGCTAACA+TGG | + | chr2_3:14652154-14652173 | None:intergenic | 40.0% | |
| TTGGGAAGTTGAAACGAAGA+GGG | + | chr2_3:14652170-14652189 | None:intergenic | 40.0% | |
| TTTGGGAAGTTGAAACGAAG+AGG | + | chr2_3:14652171-14652190 | None:intergenic | 40.0% | |
| AAATTGGCGTGAAAACGATG+AGG | + | chr2_3:14652211-14652230 | None:intergenic | 40.0% | |
| CCAGTGCTTTCATCTGATTT+GGG | + | chr2_3:14652321-14652340 | None:intergenic | 40.0% | |
| CTTCCAAGAAAACTCCTTAG+TGG | + | chr2_3:14652648-14652667 | None:intergenic | 40.0% | |
| GGAGAGTAACTCGCTATTTA+GGG | - | chr2_3:14652717-14652736 | Msa0280210:intron | 40.0% | |
| ! | GTAACTCGCTATTTAGGGTA+AGG | - | chr2_3:14652722-14652741 | Msa0280210:intron | 40.0% |
| TGTCAATTAAATTGGGACGG+AGG | + | chr2_3:14652796-14652815 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr2_3:14652987-14653006 | Msa0280210:intron | 40.0% | |
| TGAAGCATAGACACATACAC+CGG | - | chr2_3:14653022-14653041 | Msa0280210:intron | 40.0% | |
| TTTGGTAGGCTAAATGGTTC+TGG | - | chr2_3:14653557-14653576 | Msa0280210:intron | 40.0% | |
| AGTTTCCACGTCAAGCTTTA+GGG | + | chr2_3:14653649-14653668 | None:intergenic | 40.0% | |
| ATGTTATAACCGTGCTCTCT+TGG | - | chr2_3:14653904-14653923 | Msa0280210:CDS | 40.0% | |
| AAGATGGATCTAAATCCACC+TGG | + | chr2_3:14653956-14653975 | None:intergenic | 40.0% | |
| TCATGAGAAACATGCAGAAG+AGG | - | chr2_3:14654200-14654219 | Msa0280210:intron | 40.0% | |
| ACATGAATGCCAGATGGAAA+TGG | + | chr2_3:14654343-14654362 | None:intergenic | 40.0% | |
| ATAGTGACATGAATGCCAGA+TGG | + | chr2_3:14654349-14654368 | None:intergenic | 40.0% | |
| ! | GATTTGGTCCAATTCCACTA+CGG | + | chr2_3:14654398-14654417 | None:intergenic | 40.0% |
| !! | GACTTTTTGAGGGAGAAGAA+AGG | - | chr2_3:14654735-14654754 | Msa0280210:intron | 40.0% |
| GAGTATGGAGATTCAGTGAT+TGG | - | chr2_3:14654760-14654779 | Msa0280210:intron | 40.0% | |
| GTATGGAGATTCAGTGATTG+GGG | - | chr2_3:14654762-14654781 | Msa0280210:intron | 40.0% | |
| TGATTGGGGTATGAGAAAGT+TGG | - | chr2_3:14654776-14654795 | Msa0280210:intron | 40.0% | |
| CAACGAGTTCAAGACTTTGT+TGG | - | chr2_3:14654869-14654888 | Msa0280210:intron | 40.0% | |
| TTCGACACCTAGTGATAAAG+AGG | - | chr2_3:14654910-14654929 | Msa0280210:intron | 40.0% | |
| TCGACACCTAGTGATAAAGA+GGG | - | chr2_3:14654911-14654930 | Msa0280210:intron | 40.0% | |
| ! | AAAGTATTAAACTCGGGAGG+AGG | + | chr2_3:14654963-14654982 | None:intergenic | 40.0% |
| TATCGTAGACGACGATGATT+TGG | - | chr2_3:14655094-14655113 | Msa0280210:CDS | 40.0% | |
| GGCCAGAAAATAGCATAATG+AGG | - | chr2_3:14655128-14655147 | Msa0280210:CDS | 40.0% | |
| GGGTTGAGAATTGAGAATGT+AGG | - | chr2_3:14655149-14655168 | Msa0280210:CDS | 40.0% | |
| !! | AACATGGCAGTGGTTTTTGG+AGG | + | chr2_3:14652138-14652157 | None:intergenic | 45.0% |
| ! | GCTAACATGGCAGTGGTTTT+TGG | + | chr2_3:14652141-14652160 | None:intergenic | 45.0% |
| GTTTGATGCTAACATGGCAG+TGG | + | chr2_3:14652148-14652167 | None:intergenic | 45.0% | |
| ! | CCCAAATCAGATGAAAGCAC+TGG | - | chr2_3:14652318-14652337 | Msa0280210:CDS | 45.0% |
| GCCAGTGCTTTCATCTGATT+TGG | + | chr2_3:14652322-14652341 | None:intergenic | 45.0% | |
| GGGAGAGTAACTCGCTATTT+AGG | - | chr2_3:14652716-14652735 | Msa0280210:intron | 45.0% | |
| ! | CGGAATCATAGGTGTTGTGT+CGG | - | chr2_3:14653100-14653119 | Msa0280210:intron | 45.0% |
| GCACAGACACTCCTCAAATT+AGG | + | chr2_3:14653151-14653170 | None:intergenic | 45.0% | |
| CGATGTGTCAGTATCGTGTT+TGG | - | chr2_3:14653236-14653255 | Msa0280210:intron | 45.0% | |
| CAGAAGACAGTTGAGGAAGA+TGG | - | chr2_3:14653459-14653478 | Msa0280210:intron | 45.0% | |
| TGAATCCCTAAAGCTTGACG+TGG | - | chr2_3:14653641-14653660 | Msa0280210:intron | 45.0% | |
| CAGTTTCCACGTCAAGCTTT+AGG | + | chr2_3:14653650-14653669 | None:intergenic | 45.0% | |
| GCTTGACGTGGAAACTGATA+TGG | - | chr2_3:14653653-14653672 | Msa0280210:intron | 45.0% | |
| ! | CATTATGGTTTAGGGCAGCA+TGG | + | chr2_3:14653872-14653891 | None:intergenic | 45.0% |
| ! | GGTCTTATCAGACATTCACC+AGG | - | chr2_3:14653935-14653954 | Msa0280210:intron | 45.0% |
| CTTATCAGACATTCACCAGG+TGG | - | chr2_3:14653938-14653957 | Msa0280210:intron | 45.0% | |
| GCTATAGTGTTATGCCGTAG+TGG | - | chr2_3:14654381-14654400 | Msa0280210:intron | 45.0% | |
| ! | GTGTTATGCCGTAGTGGAAT+TGG | - | chr2_3:14654387-14654406 | Msa0280210:intron | 45.0% |
| CATTGTTGCGTACCGCAATT+TGG | - | chr2_3:14654485-14654504 | Msa0280210:intron | 45.0% | |
| GGGAGAAGAAAGGAAGAGTA+TGG | - | chr2_3:14654745-14654764 | Msa0280210:intron | 45.0% | |
| CTTCGTCCCTCTTTATCACT+AGG | + | chr2_3:14654920-14654939 | None:intergenic | 45.0% | |
| TATTAAACTCGGGAGGAGGA+GGG | + | chr2_3:14654959-14654978 | None:intergenic | 45.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr2_3:14652991-14653010 | Msa0280210:intron | 50.0% | |
| ! | CATAGGTGTTGTGTCGGTGT+CGG | - | chr2_3:14653106-14653125 | Msa0280210:intron | 50.0% |
| AATTAGGCGTGTCCCTGTGT+CGG | + | chr2_3:14653135-14653154 | None:intergenic | 50.0% | |
| ACAGGGACACGCCTAATTTG+AGG | - | chr2_3:14653137-14653156 | Msa0280210:intron | 50.0% | |
| GTATTAAACTCGGGAGGAGG+AGG | + | chr2_3:14654960-14654979 | None:intergenic | 50.0% | |
| GATGATATTGAGGGCGGTGA+AGG | - | chr2_3:14655065-14655084 | Msa0280210:CDS | 50.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr2_3:14652995-14653014 | Msa0280210:intron | 55.0% | |
| CCAGACTGTCCAAGAGAGCA+CGG | + | chr2_3:14653916-14653935 | None:intergenic | 55.0% | |
| CGTGCTCTCTTGGACAGTCT+GGG | - | chr2_3:14653914-14653933 | Msa0280210:CDS | 55.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr2_3:14652994-14653013 | Msa0280210:intron | 60.0% | |
| GCTTCATACTCCCTCCGTCC+CGG | + | chr2_3:14653008-14653027 | None:intergenic | 60.0% | |
| CCGTGCTCTCTTGGACAGTC+TGG | - | chr2_3:14653913-14653932 | Msa0280210:CDS | 60.0% | |
| CGGCGTGTACGTGTCGTGTC+CGG | + | chr2_3:14653044-14653063 | None:intergenic | 65.0% | |
| !! | TCGGTGTCGGACACCGACAC+AGG | - | chr2_3:14653119-14653138 | Msa0280210:intron | 65.0% |
| ! | CGGTGTCGGACACCGACACA+GGG | - | chr2_3:14653120-14653139 | Msa0280210:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 14652056 | 14655347 | 14652056 | ID=Msa0280210;Name=Msa0280210 |
| chr2_3 | mRNA | 14652056 | 14655347 | 14652056 | ID=Msa0280210-mRNA-1;Parent=Msa0280210;Name=Msa0280210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=34|1|1|1|1|1|5|202|293 |
| chr2_3 | exon | 14652056 | 14652667 | 14652056 | ID=Msa0280210-mRNA-1:exon:6208;Parent=Msa0280210-mRNA-1 |
| chr2_3 | exon | 14653154 | 14653231 | 14653154 | ID=Msa0280210-mRNA-1:exon:6207;Parent=Msa0280210-mRNA-1 |
| chr2_3 | exon | 14653716 | 14653772 | 14653716 | ID=Msa0280210-mRNA-1:exon:6206;Parent=Msa0280210-mRNA-1 |
| chr2_3 | exon | 14653887 | 14653941 | 14653887 | ID=Msa0280210-mRNA-1:exon:6205;Parent=Msa0280210-mRNA-1 |
| chr2_3 | exon | 14655032 | 14655347 | 14655032 | ID=Msa0280210-mRNA-1:exon:6204;Parent=Msa0280210-mRNA-1 |
| chr2_3 | five_prime_UTR | 14655314 | 14655347 | 14655314 | ID=Msa0280210-mRNA-1:five_prime_utr;Parent=Msa0280210-mRNA-1 |
| chr2_3 | CDS | 14655032 | 14655313 | 14655032 | ID=Msa0280210-mRNA-1:cds;Parent=Msa0280210-mRNA-1 |
| chr2_3 | CDS | 14653887 | 14653941 | 14653887 | ID=Msa0280210-mRNA-1:cds;Parent=Msa0280210-mRNA-1 |
| chr2_3 | CDS | 14653716 | 14653772 | 14653716 | ID=Msa0280210-mRNA-1:cds;Parent=Msa0280210-mRNA-1 |
| chr2_3 | CDS | 14653154 | 14653231 | 14653154 | ID=Msa0280210-mRNA-1:cds;Parent=Msa0280210-mRNA-1 |
| chr2_3 | CDS | 14652258 | 14652667 | 14652258 | ID=Msa0280210-mRNA-1:cds;Parent=Msa0280210-mRNA-1 |
| chr2_3 | three_prime_UTR | 14652056 | 14652257 | 14652056 | ID=Msa0280210-mRNA-1:three_prime_utr;Parent=Msa0280210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
