AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380310 MtrunA17_Chr3g0145781 90.257 544 22 4 1 522 3 537 0.0 993
Msa0380310 MtrunA17_Chr6g0466611 32.609 414 238 14 117 516 142 528 5.35e-52 188
Msa0380310 MtrunA17_Chr4g0062301 28.382 377 225 10 140 505 120 462 4.24e-41 155
Msa0380310 MtrunA17_Chr3g0107851 29.815 379 241 10 115 489 115 472 5.07e-41 155
Msa0380310 MtrunA17_Chr2g0330401 28.061 392 251 12 115 504 94 456 1.71e-40 152
Msa0380310 MtrunA17_Chr2g0307471 29.032 403 232 15 110 497 84 447 1.75e-39 150
Msa0380310 MtrunA17_Chr4g0063551 30.548 383 224 12 138 504 161 517 1.08e-38 150
Msa0380310 MtrunA17_Chr3g0098121 28.833 437 267 13 75 506 117 514 6.99e-37 145
Msa0380310 MtrunA17_Chr2g0300291 29.493 434 262 13 83 506 105 504 3.27e-36 143
Msa0380310 MtrunA17_Chr7g0270131 26.718 393 256 11 115 504 230 593 8.45e-36 142
Msa0380310 MtrunA17_Chr1g0193491 28.042 378 243 10 121 496 118 468 1.99e-34 137
Msa0380310 MtrunA17_Chr1g0157691 27.273 385 243 12 115 490 145 501 2.64e-34 136
Msa0380310 MtrunA17_Chr7g0271121 28.610 374 233 11 127 496 116 459 2.65e-34 137
Msa0380310 MtrunA17_Chr5g0409981 28.169 426 268 15 88 504 72 468 4.08e-34 135
Msa0380310 MtrunA17_Chr6g0449911 26.649 379 246 10 115 491 163 511 4.69e-34 136
Msa0380310 MtrunA17_Chr1g0200181 27.013 385 244 12 115 490 143 499 6.12e-34 135
Msa0380310 MtrunA17_Chr2g0293631 28.117 377 239 12 117 491 496 842 2.77e-33 135
Msa0380310 MtrunA17_Chr1g0176041 28.431 408 245 14 115 505 152 529 5.19e-33 132
Msa0380310 MtrunA17_Chr6g0483491 26.829 410 255 11 115 518 8 378 7.70e-32 127
Msa0380310 MtrunA17_Chr6g0461751 24.868 378 255 9 117 492 140 490 4.02e-31 126
Msa0380310 MtrunA17_Chr7g0236841 26.098 410 258 11 115 518 8 378 6.53e-31 124
Msa0380310 MtrunA17_Chr7g0247191 28.042 378 232 11 106 480 139 479 2.60e-30 124
Msa0380310 MtrunA17_Chr7g0247181 27.014 422 267 12 63 480 85 469 3.47e-30 123
Msa0380310 MtrunA17_Chr4g0040761 29.201 363 222 11 139 498 41 371 4.24e-30 125
Msa0380310 MtrunA17_Chr7g0247221 28.042 378 232 11 106 480 132 472 4.96e-30 123
Msa0380310 MtrunA17_Chr7g0263771 25.823 395 252 13 115 503 127 486 7.31e-30 123
Msa0380310 MtrunA17_Chr2g0277821 26.371 383 247 11 115 492 502 854 9.56e-30 124
Msa0380310 MtrunA17_Chr4g0034411 29.067 375 219 17 140 503 99 437 1.04e-29 123
Msa0380310 MtrunA17_Chr3g0121351 25.862 406 259 14 115 505 143 521 1.51e-29 122
Msa0380310 MtrunA17_Chr2g0310581 27.708 397 239 14 117 503 53 411 2.27e-29 121
Msa0380310 MtrunA17_Chr6g0475251 29.915 351 205 12 142 482 128 447 9.53e-29 120
Msa0380310 MtrunA17_Chr5g0443991 27.614 373 228 15 140 503 99 438 1.88e-28 120
Msa0380310 MtrunA17_Chr3g0114081 29.255 376 227 14 142 501 41 393 2.09e-28 119
Msa0380310 MtrunA17_Chr7g0236831 26.364 440 229 15 127 498 173 585 2.56e-28 119
Msa0380310 MtrunA17_Chr2g0297261 25.776 419 272 10 91 503 2 387 5.24e-28 115
Msa0380310 MtrunA17_Chr3g0095031 25.628 398 245 11 121 507 94 451 5.65e-28 117
Msa0380310 MtrunA17_Chr5g0442191 26.463 393 248 13 121 507 85 442 9.69e-28 117
Msa0380310 MtrunA17_Chr1g0192021 25.791 411 232 13 116 481 25 407 1.24e-27 117
Msa0380310 MtrunA17_Chr4g0058591 27.195 353 221 11 115 462 200 521 1.56e-26 113
Msa0380310 MtrunA17_Chr4g0029191 27.253 455 251 19 100 490 27 465 1.64e-25 110
Msa0380310 MtrunA17_Chr4g0070981 27.083 384 231 11 117 492 41 383 2.81e-25 108
Msa0380310 MtrunA17_Chr2g0299681 27.461 386 227 12 117 492 41 383 4.42e-25 107
Msa0380310 MtrunA17_Chr2g0329931 27.013 385 232 12 116 492 40 383 8.86e-25 106
Msa0380310 MtrunA17_Chr4g0003441 27.638 398 232 12 118 501 109 464 9.16e-25 107
Msa0380310 MtrunA17_Chr8g0347161 24.684 474 296 16 36 486 24 459 1.16e-24 107
Msa0380310 MtrunA17_Chr1g0204391 27.473 364 213 10 142 482 69 404 3.98e-24 106
Msa0380310 MtrunA17_Chr8g0342861 26.343 391 239 12 117 499 41 390 6.23e-24 103
Msa0380310 MtrunA17_Chr4g0076491 24.873 394 253 15 115 490 285 653 2.86e-23 103
Msa0380310 MtrunA17_Chr1g0149251 27.778 342 195 10 161 490 8 309 2.79e-22 98.2
Msa0380310 MtrunA17_Chr8g0347151 25.505 396 261 15 102 486 186 558 2.71e-21 97.8
Msa0380310 MtrunA17_Chr6g0449741 24.619 394 252 14 115 490 247 613 2.73e-21 97.8
Msa0380310 MtrunA17_Chr8g0386451 25.296 423 268 15 111 516 282 673 3.02e-21 97.8
Msa0380310 MtrunA17_Chr2g0309551 24.582 419 270 11 102 483 93 502 1.42e-19 92.0
Msa0380310 MtrunA17_Chr6g0465771 30.994 171 108 3 118 287 93 254 2.52e-18 86.3
Msa0380310 MtrunA17_Chr4g0074521 23.573 403 244 12 108 480 73 441 3.93e-17 84.0
Msa0380310 MtrunA17_Chr0c09g0493491 29.609 179 116 3 118 295 93 262 7.80e-17 81.3
Msa0380310 MtrunA17_Chr8g0364251 32.432 185 109 6 303 483 358 530 9.31e-17 83.2
Msa0380310 MtrunA17_Chr8g0364251 30.412 194 110 8 107 282 75 261 2.76e-13 72.4
Msa0380310 MtrunA17_Chr4g0039471 30.542 203 124 6 117 315 223 412 1.33e-16 82.0
Msa0380310 MtrunA17_Chr5g0429221 22.359 407 277 14 115 517 1 372 5.97e-15 77.0
Msa0380310 MtrunA17_Chr8g0349951 27.976 168 104 3 114 281 7 157 7.97e-14 69.3
Msa0380310 MtrunA17_Chr2g0301281 30.978 184 113 6 110 285 34 211 1.29e-13 73.6
Msa0380310 MtrunA17_Chr4g0062321 24.268 239 143 8 228 456 23 233 7.90e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380310 AT3G06980.1 67.188 448 130 3 90 522 334 779 0.0 635
Msa0380310 AT4G09730.1 31.250 416 245 12 115 516 111 499 1.13e-55 197
Msa0380310 AT1G55150.1 30.628 382 232 13 115 492 98 450 3.04e-43 160
Msa0380310 AT1G55150.2 30.628 382 232 13 115 492 123 475 9.77e-43 160
Msa0380310 AT5G63120.2 29.114 395 245 12 115 505 164 527 2.28e-39 151
Msa0380310 AT5G14610.2 28.534 382 235 13 115 491 160 508 3.37e-38 149
Msa0380310 AT5G14610.6 28.534 382 235 13 115 491 160 508 3.58e-38 148
Msa0380310 AT5G14610.5 28.534 382 235 13 115 491 168 516 3.87e-38 148
Msa0380310 AT5G14610.7 28.533 375 227 14 122 491 39 377 2.00e-36 142
Msa0380310 AT5G14610.3 28.533 375 227 14 122 491 39 377 2.00e-36 142
Msa0380310 AT3G01540.1 28.158 380 239 12 115 491 157 505 3.50e-36 142
Msa0380310 AT3G01540.4 28.158 380 239 12 115 491 157 505 3.99e-36 142
Msa0380310 AT3G01540.2 28.158 380 239 12 115 491 157 505 3.99e-36 142
Msa0380310 AT3G01540.3 28.158 380 239 12 115 491 157 505 3.99e-36 142
Msa0380310 AT2G47330.1 26.582 395 254 11 115 504 227 590 2.40e-35 141
Msa0380310 AT5G14610.1 28.689 366 223 13 131 491 244 576 2.54e-35 140
Msa0380310 AT1G31970.1 29.397 398 247 14 108 498 108 478 3.84e-35 139
Msa0380310 AT5G51280.1 26.893 383 247 11 115 490 145 501 5.13e-35 139
Msa0380310 AT5G65900.1 27.027 407 242 13 110 501 148 514 5.57e-34 136
Msa0380310 AT5G60990.1 27.540 374 241 10 115 483 8 356 2.01e-33 132
Msa0380310 AT4G33370.1 26.632 383 248 11 115 490 96 452 2.36e-33 133
Msa0380310 AT2G42520.2 28.501 407 246 14 115 505 158 535 3.05e-33 134
Msa0380310 AT2G42520.1 28.501 407 246 14 115 505 158 535 3.05e-33 134
Msa0380310 AT2G42520.3 28.501 407 246 14 115 505 158 535 3.05e-33 134
Msa0380310 AT5G26742.1 28.954 373 231 11 129 496 115 458 1.14e-32 133
Msa0380310 AT5G26742.2 28.954 373 231 11 129 496 115 458 1.14e-32 133
Msa0380310 AT1G16280.1 25.446 448 285 14 65 505 14 419 2.78e-32 130
Msa0380310 AT3G06480.1 27.481 393 252 12 117 505 436 799 3.07e-32 132
Msa0380310 AT4G00660.1 28.042 378 232 11 106 480 121 461 5.77e-32 129
Msa0380310 AT4G00660.2 28.042 378 232 11 106 480 121 461 5.77e-32 129
Msa0380310 AT3G61240.2 28.042 378 232 10 106 480 114 454 7.34e-32 129
Msa0380310 AT3G61240.1 28.042 378 232 10 106 480 114 454 7.34e-32 129
Msa0380310 AT3G58510.1 28.155 412 251 14 115 509 150 533 8.04e-32 129
Msa0380310 AT3G58510.3 28.155 412 251 14 115 509 150 533 8.04e-32 129
Msa0380310 AT3G58510.2 28.155 412 251 14 115 509 150 533 8.04e-32 129
Msa0380310 AT3G58570.1 27.500 400 259 12 115 505 145 522 1.66e-31 129
Msa0380310 AT1G51380.1 26.720 378 244 10 115 492 21 365 1.68e-31 125
Msa0380310 AT5G26742.3 29.805 359 221 13 141 496 35 365 2.22e-31 129
Msa0380310 AT2G45810.1 28.906 384 231 11 100 480 140 484 2.29e-31 127
Msa0380310 AT3G18600.1 27.688 372 215 13 140 497 113 444 2.81e-31 127
Msa0380310 AT1G20920.2 26.562 384 245 12 115 492 190 542 4.33e-31 128
Msa0380310 AT1G71370.1 28.643 398 219 14 127 501 27 382 5.55e-31 127
Msa0380310 AT1G20920.4 26.562 384 245 12 115 492 528 880 6.40e-31 128
Msa0380310 AT1G20920.6 26.562 384 245 12 115 492 528 880 6.40e-31 128
Msa0380310 AT1G20920.3 26.562 384 245 12 115 492 528 880 6.40e-31 128
Msa0380310 AT1G20920.7 26.562 384 245 12 115 492 528 880 6.40e-31 128
Msa0380310 AT1G20920.5 26.562 384 245 12 115 492 528 880 6.40e-31 128
Msa0380310 AT1G20920.1 26.562 384 245 12 115 492 528 880 6.40e-31 128
Msa0380310 AT5G14610.4 27.221 349 217 12 115 458 168 484 4.75e-30 123
Msa0380310 AT3G09720.2 26.835 395 248 13 115 503 136 495 5.31e-30 124
Msa0380310 AT3G09720.1 26.835 395 248 13 115 503 136 495 5.31e-30 124
Msa0380310 AT1G77030.1 28.571 357 220 10 139 492 51 375 1.74e-29 123
Msa0380310 AT5G63120.1 29.032 341 208 11 115 451 164 474 1.90e-29 121
Msa0380310 AT5G63120.3 29.032 341 208 11 115 451 164 474 2.21e-29 121
Msa0380310 AT5G63120.4 29.032 341 208 11 115 451 164 474 2.21e-29 121
Msa0380310 AT5G63120.5 29.032 341 208 11 115 451 164 474 2.21e-29 121
Msa0380310 AT3G22330.1 25.490 408 262 12 117 518 105 476 3.14e-29 122
Msa0380310 AT5G54910.1 26.961 408 249 15 110 505 65 435 3.68e-29 122
Msa0380310 AT4G16630.1 28.133 391 246 12 113 499 164 523 5.90e-29 122
Msa0380310 AT3G02065.3 27.865 384 237 13 117 492 111 462 1.73e-28 119
Msa0380310 AT3G02065.2 27.865 384 237 13 117 492 111 462 1.73e-28 119
Msa0380310 AT3G22310.2 25.000 408 264 12 117 518 117 488 5.76e-28 118
Msa0380310 AT3G22310.1 25.000 408 264 12 117 518 117 488 6.16e-28 118
Msa0380310 AT5G05450.1 27.041 392 232 14 127 496 27 386 7.39e-28 117
Msa0380310 AT3G19760.1 25.707 389 256 9 115 503 34 389 1.90e-27 114
Msa0380310 AT3G09620.2 25.393 382 217 11 118 492 399 719 2.55e-27 117
Msa0380310 AT3G09620.1 25.393 382 217 11 118 492 398 718 2.82e-27 117
Msa0380310 AT3G02065.1 28.329 353 223 12 142 492 1 325 3.74e-27 113
Msa0380310 AT2G33730.1 23.554 484 315 16 56 507 239 699 2.58e-26 114
Msa0380310 AT5G11170.1 26.108 406 242 13 101 490 29 392 7.24e-25 107
Msa0380310 AT5G11200.1 26.108 406 242 13 101 490 29 392 7.24e-25 107
Msa0380310 AT4G34910.1 24.634 410 240 11 116 481 46 430 7.93e-25 108
Msa0380310 AT3G13920.1 27.083 384 233 10 116 492 39 382 2.79e-24 105
Msa0380310 AT3G06480.2 25.648 347 229 10 117 462 436 754 2.92e-24 107
Msa0380310 AT3G13920.2 27.083 384 233 10 116 492 39 382 3.02e-24 105
Msa0380310 AT3G13920.5 27.083 384 233 10 116 492 43 386 3.15e-24 105
Msa0380310 AT3G13920.3 27.083 384 233 10 116 492 29 372 3.50e-24 105
Msa0380310 AT1G54270.1 25.995 377 246 8 116 492 39 382 5.64e-24 104
Msa0380310 AT3G16840.1 26.406 409 236 13 126 481 200 596 1.16e-23 105
Msa0380310 AT3G16840.2 26.406 409 236 13 126 481 201 597 1.21e-23 105
Msa0380310 AT2G07750.1 25.679 405 254 15 106 493 365 739 1.64e-23 105
Msa0380310 AT1G28180.1 28.451 355 213 13 162 507 19 341 2.01e-23 102
Msa0380310 AT2G40700.1 25.785 446 251 21 110 490 24 454 6.52e-23 102
Msa0380310 AT5G62190.1 26.374 364 201 9 142 482 122 441 1.03e-22 102
Msa0380310 AT1G12770.2 23.666 431 283 11 112 507 106 525 1.91e-22 101
Msa0380310 AT1G12770.1 23.666 431 283 11 112 507 106 525 1.91e-22 101
Msa0380310 AT5G08610.1 26.289 388 233 16 113 486 392 740 2.26e-22 101
Msa0380310 AT1G72730.1 26.471 374 226 11 127 492 52 384 3.48e-22 99.4
Msa0380310 AT3G13920.4 27.083 384 228 11 116 492 39 377 4.41e-22 99.0
Msa0380310 AT5G11200.3 24.769 432 256 14 101 490 29 433 5.30e-22 99.4
Msa0380310 AT1G54270.2 25.995 377 241 9 116 492 39 377 9.89e-22 97.8
Msa0380310 AT1G63250.1 25.000 404 258 15 106 493 318 692 2.77e-21 98.2
Msa0380310 AT5G11170.2 27.616 344 193 12 161 490 8 309 3.52e-21 95.5
Msa0380310 AT5G63630.1 25.320 391 233 13 113 486 64 412 2.70e-20 94.4
Msa0380310 AT5G63630.2 25.063 395 229 15 113 486 258 606 3.68e-20 94.7
Msa0380310 AT5G19210.2 25.879 398 247 15 104 480 64 434 1.30e-19 92.0
Msa0380310 AT5G08620.1 24.422 389 256 12 111 486 75 438 1.86e-19 92.0
Msa0380310 AT1G51380.2 24.632 272 182 5 115 386 21 269 9.05e-19 87.0
Msa0380310 AT1G51380.4 26.866 201 135 3 115 315 21 209 6.84e-17 82.0
Msa0380310 AT1G51380.3 28.293 205 127 4 115 315 21 209 6.89e-17 82.0
Msa0380310 AT1G59990.2 27.778 216 132 6 303 514 354 549 4.08e-15 78.6
Msa0380310 AT1G59990.1 27.778 216 132 6 303 514 354 549 5.46e-15 78.2
Msa0380310 AT3G53110.1 22.899 476 298 15 67 509 27 466 1.96e-13 73.2
Msa0380310 AT5G11200.2 26.160 237 155 7 101 329 29 253 7.46e-12 68.2

Find 142 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGAAGTGTCCCAGTTTA+TGG 0.122594 3_1:+81981566 Msa0380310:CDS
CGGCATCTTTAGATGGTCTT+TGG 0.177734 3_1:+81982168 Msa0380310:three_prime_UTR
TGCTGTTTAGCATCGGAGTT+GGG 0.266012 3_1:+81979210 Msa0380310:CDS
ATATTACTTAGTAACTTCTT+AGG 0.277798 3_1:+81982215 Msa0380310:three_prime_UTR
ATTGCTGACCAGAGTGGTTC+TGG 0.306260 3_1:+81979644 Msa0380310:CDS
GCCCTGTCCCCTGGCACCTC+TGG 0.308184 3_1:-81981837 None:intergenic
AGAGTGTTTAGTGGGTCTTC+TGG 0.313148 3_1:-81979240 None:intergenic
TAGACATTGAACGACAATTA+TGG 0.323737 3_1:-81979802 None:intergenic
TTGGAAAGGGTGCTCTCAAC+TGG 0.323947 3_1:+81982008 Msa0380310:three_prime_UTR
TCATGAAAATAAAATTTGAT+TGG 0.327018 3_1:-81982306 None:intergenic
ATAAACTGGGACACTTCTTT+TGG 0.327753 3_1:-81981564 None:intergenic
TGTCCGTGCAAACCATAAAC+TGG 0.332471 3_1:-81981578 None:intergenic
TTGCAGAACACAATAGTTCT+TGG 0.346234 3_1:-81981299 None:intergenic
TCATTTGCTCCTGTTATTGC+CGG 0.349281 3_1:+81979608 Msa0380310:CDS
GATGAGGTTGATATCCTCTT+TGG 0.353589 3_1:+81980150 Msa0380310:CDS
GAGTGTTTAGTGGGTCTTCT+GGG 0.364053 3_1:-81979239 None:intergenic
GGTAGCACCGACAATATTCT+AGG 0.364067 3_1:+81982087 Msa0380310:three_prime_UTR
GGCGAGTTAAAGAGAGGTTA+TGG 0.368794 3_1:-81979565 None:intergenic
CAAGACTTTCCGGCAATAAC+AGG 0.372706 3_1:-81979617 None:intergenic
AAAAGAGAAGAGAATCAAAA+TGG 0.386747 3_1:+81979154 Msa0380310:exon
AGCAATTATACAAGACTTTC+CGG 0.389114 3_1:-81979627 None:intergenic
GGCAAAGGAAGGAAATCTTT+TGG 0.389304 3_1:+81982066 Msa0380310:three_prime_UTR
GGCATCTTTAGATGGTCTTT+GGG 0.393310 3_1:+81982169 Msa0380310:three_prime_UTR
CATGAAAATAAAATTTGATT+GGG 0.393804 3_1:-81982305 None:intergenic
AGCCAGAGGTGCCAGGGGAC+AGG 0.398550 3_1:+81981835 Msa0380310:CDS
GTCGATAAAACCACGAGTTT+CGG 0.403323 3_1:+81979314 Msa0380310:CDS
CACAGCTGAGTTAGCTTCTC+AGG 0.409704 3_1:+81979775 Msa0380310:CDS
TGATTGCCGGCATCTTTAGA+TGG 0.415343 3_1:+81982161 Msa0380310:three_prime_UTR
AGTTACTAAGTAATATGATT+AGG 0.415417 3_1:-81982208 None:intergenic
TGTCGTTCAATGTCTAAATC+TGG 0.417609 3_1:+81979809 Msa0380310:CDS
GAGTTGGATGGGGAGACAAT+AGG 0.426703 3_1:+81979456 Msa0380310:CDS
AAGGCATTTATCTTTGTTGT+TGG 0.426934 3_1:+81981860 Msa0380310:CDS
TGCAGAACACAATAGTTCTT+GGG 0.438418 3_1:-81981298 None:intergenic
CCCATGACCATTTCACAATC+AGG 0.439831 3_1:-81980294 None:intergenic
GAGCTGAAGAAGTAGGAAGT+TGG 0.443767 3_1:+81981971 Msa0380310:three_prime_UTR
TCCACTGCATGATGTACCTT+CGG 0.449294 3_1:+81981934 Msa0380310:CDS
GAGAGATTCAATCATGAAAT+CGG 0.449692 3_1:-81979543 None:intergenic
AGTTGGATGGGGAGACAATA+GGG 0.452318 3_1:+81979457 Msa0380310:CDS
TTGCTGTTTAGCATCGGAGT+TGG 0.453311 3_1:+81979209 Msa0380310:CDS
GCAAGGGCTACATTGATTGC+CGG 0.453734 3_1:+81982148 Msa0380310:three_prime_UTR
GAAGAACAGCCAGAGGTGCC+AGG 0.461221 3_1:+81981828 Msa0380310:CDS
CTAAAATCATTTAAAGACAT+TGG 0.461700 3_1:+81979515 Msa0380310:CDS
AGTGAAACCTGACCTCTTCA+AGG 0.469671 3_1:-81980344 None:intergenic
AACTCGCCCTTCCAACATAC+AGG 0.470926 3_1:+81979580 Msa0380310:CDS
AACTCATTCGAGAGTTGGAT+GGG 0.471462 3_1:+81979445 Msa0380310:CDS
AAATGCCTTGCCCTGTCCCC+TGG 0.473330 3_1:-81981846 None:intergenic
TGTCTGAGACGTTGAATGAT+TGG 0.476607 3_1:-81979689 None:intergenic
TCTGCAACTCATTCGAGAGT+TGG 0.479138 3_1:+81979440 Msa0380310:CDS
AGTTTATGGTTTGCACGGAC+AGG 0.484625 3_1:+81981580 Msa0380310:CDS
AACTTGTAACAGAGCTTCGC+GGG 0.488229 3_1:+81981727 Msa0380310:intron
AGGTGCCAGGGGACAGGGCA+AGG 0.488567 3_1:+81981841 Msa0380310:CDS
GAATTCCCTTTCTATCAAAA+CGG 0.499892 3_1:-81981461 None:intergenic
TCTTTAGATGGTCTTTGGGC+AGG 0.501801 3_1:+81982173 Msa0380310:three_prime_UTR
GCCAGAGGTGCCAGGGGACA+GGG 0.502782 3_1:+81981836 Msa0380310:CDS
ATTATGTTGCAGTGCTGTCT+TGG 0.503149 3_1:+81980128 Msa0380310:intron
TCCTGATTGTGAAATGGTCA+TGG 0.506213 3_1:+81980293 Msa0380310:CDS
GTAGATTGTAGTGGGGAAGA+TGG 0.506554 3_1:+81981200 Msa0380310:CDS
AGCTGCTCTTCTGCAGCTTG+CGG 0.507830 3_1:+81981262 Msa0380310:CDS
TTTAATTGATTGCTTGGAAA+GGG 0.510457 3_1:+81981995 Msa0380310:three_prime_UTR
TCATCGACCTAGAATATTGT+CGG 0.512080 3_1:-81982094 None:intergenic
TGGCGATGAGGACTTCGAAA+AGG 0.514933 3_1:+81980170 Msa0380310:CDS
AGATAATAGTAGATTGTAGT+GGG 0.515530 3_1:+81981192 Msa0380310:intron
ATGCTTGATTAGTTCTTCAC+CGG 0.515910 3_1:+81980200 Msa0380310:CDS
CAACTCATTCGAGAGTTGGA+TGG 0.521020 3_1:+81979444 Msa0380310:CDS
GGTTGATGAGGAAGAGAAAA+CGG 0.523534 3_1:-81979934 None:intergenic
GAAGAAGACAGAGTGTTTAG+TGG 0.529879 3_1:-81979249 None:intergenic
CAATAGGGTTAGCAGTCAAT+CGG 0.532781 3_1:+81979472 Msa0380310:CDS
GGCTCCTCATAGCAAAAGCA+AGG 0.533958 3_1:+81982131 Msa0380310:three_prime_UTR
AGTGAATATGTACGGCGTGT+TGG 0.534281 3_1:+81981806 Msa0380310:CDS
CAAAGACCATCTAAAGATGC+CGG 0.535252 3_1:-81982167 None:intergenic
CCTGATTGTGAAATGGTCAT+GGG 0.535391 3_1:+81980294 Msa0380310:CDS
GTCCCAGTTTATGGTTTGCA+CGG 0.536407 3_1:+81981575 Msa0380310:CDS
GTGACAAGCATAGATTTGAA+TGG 0.537448 3_1:-81979839 None:intergenic
CTTAGGAATTGTATTACCAC+CGG 0.538984 3_1:+81982232 Msa0380310:three_prime_UTR
AAATCTATGCTTGTCACTGG+TGG 0.541886 3_1:+81979845 Msa0380310:CDS
AAGAAGACAGAGTGTTTAGT+GGG 0.547041 3_1:-81979248 None:intergenic
ATCACGGCTTACTAGTATGA+AGG 0.552151 3_1:+81981524 Msa0380310:CDS
TTGCAGTGCTGTCTTGGATG+AGG 0.552233 3_1:+81980134 Msa0380310:intron
CGAAGTCCTCATCGCCAAAG+AGG 0.554253 3_1:-81980164 None:intergenic
CAGATAATAGTAGATTGTAG+TGG 0.557322 3_1:+81981191 Msa0380310:intron
TTCAAATCTATGCTTGTCAC+TGG 0.558308 3_1:+81979842 Msa0380310:CDS
GTGGTTGCGCAAGGTGTTTG+TGG 0.559691 3_1:+81979179 Msa0380310:CDS
GTATTGAGAGCTGAAGAAGT+AGG 0.560738 3_1:+81981964 Msa0380310:exon
TGGAAGGGCGAGTTAAAGAG+AGG 0.560834 3_1:-81979571 None:intergenic
AAATGACATGGCCTGTATGT+TGG 0.565806 3_1:-81979591 None:intergenic
AGTAATGGAAAGAAATCGGA+AGG 0.566217 3_1:+81981907 Msa0380310:CDS
TCGATGAAACGTGCATTGCT+AGG 0.568808 3_1:+81982110 Msa0380310:three_prime_UTR
AAGAACAGCCAGAGGTGCCA+GGG 0.570215 3_1:+81981829 Msa0380310:CDS
GAACTTATTCGATGCATACT+AGG 0.571644 3_1:-81980318 None:intergenic
AATAAATATTGTGTGTCCAC+CGG 0.571880 3_1:-81980219 None:intergenic
CAACTTGTAACAGAGCTTCG+CGG 0.572338 3_1:+81981726 Msa0380310:intron
TGGAAAGGGTGCTCTCAACT+GGG 0.579482 3_1:+81982009 Msa0380310:three_prime_UTR
AAGTCTAACATGCATGGCAA+AGG 0.579671 3_1:+81982051 Msa0380310:three_prime_UTR
CTTGATTAGTTCTTCACCGG+TGG 0.581413 3_1:+81980203 Msa0380310:CDS
AAAGCGTTGCTGTTTAGCAT+CGG 0.582268 3_1:+81979203 Msa0380310:CDS
TGTGTCATGGCAGCATGGAA+AGG 0.582945 3_1:-81981498 None:intergenic
CTCAGACAACAAGAACTACA+AGG 0.588339 3_1:+81979704 Msa0380310:CDS
TGATATCCTCTTTGGCGATG+AGG 0.588829 3_1:+81980158 Msa0380310:CDS
CTAACATGCATGGCAAAGGA+AGG 0.589079 3_1:+81982055 Msa0380310:three_prime_UTR
TGCACTTAACTAATCTAACA+TGG 0.590356 3_1:+81979966 Msa0380310:CDS
ATGTCTTTCCAGAACCACTC+TGG 0.590455 3_1:-81979652 None:intergenic
AATAAGTTCTCGCCTTGAAG+AGG 0.590513 3_1:+81980332 Msa0380310:CDS
TGCAGGAGTGTCATTTCCGG+TGG 0.590891 3_1:-81982248 None:intergenic
CTGAGAAGCTAACTCAGCTG+TGG 0.591686 3_1:-81979774 None:intergenic
TTTCTCTTCCTCATCAACCA+AGG 0.592789 3_1:+81979938 Msa0380310:CDS
AAGCCGTGATTCTTGTGTCA+TGG 0.593997 3_1:-81981511 None:intergenic
TATTGTAAGTCTAACATGCA+TGG 0.594332 3_1:+81982045 Msa0380310:three_prime_UTR
ACACGCCGTACATATTCACT+TGG 0.594509 3_1:-81981803 None:intergenic
GGGAATTGACTTCACTAGAG+TGG 0.597817 3_1:+81981748 Msa0380310:CDS
TCAACTCGACACTTTAAACC+AGG 0.598198 3_1:+81979883 Msa0380310:CDS
GTCCGTGCAAACCATAAACT+GGG 0.602781 3_1:-81981577 None:intergenic
GGTGCGAGTATAACAAGAGT+GGG 0.603768 3_1:-81979752 None:intergenic
ACATATTCACTTGGATCACG+TGG 0.605024 3_1:-81981794 None:intergenic
GCTGTTTAGCATCGGAGTTG+GGG 0.606514 3_1:+81979211 Msa0380310:CDS
GTGATCCAAGTGAATATGTA+CGG 0.607674 3_1:+81981798 Msa0380310:CDS
TTCAATGTCTAAATCTGGCA+AGG 0.610738 3_1:+81979814 Msa0380310:CDS
ATGAGGAAGAGAAAACGGCC+AGG 0.612771 3_1:-81979929 None:intergenic
TGAGAAGCTAACTCAGCTGT+GGG 0.613832 3_1:-81979773 None:intergenic
AAAATGGCGGTGGTTGCGCA+AGG 0.615353 3_1:+81979170 Msa0380310:exon
GAAGAGAATCAAAATGGCGG+TGG 0.615716 3_1:+81979160 Msa0380310:exon
GACATGGCCTGTATGTTGGA+AGG 0.625996 3_1:-81979587 None:intergenic
CTGCCATGACACAAGAATCA+CGG 0.635761 3_1:+81981508 Msa0380310:CDS
GATAATAGTAGATTGTAGTG+GGG 0.637024 3_1:+81981193 Msa0380310:intron
AGAACAGCCAGAGGTGCCAG+GGG 0.638006 3_1:+81981830 Msa0380310:CDS
GCCGAAGGTACATCATGCAG+TGG 0.640301 3_1:-81981935 None:intergenic
TGTATAATTGCTGACCAGAG+TGG 0.648838 3_1:+81979638 Msa0380310:CDS
GGGTGCGAGTATAACAAGAG+TGG 0.651197 3_1:-81979753 None:intergenic
TCTCAATACTCATAAGCCGA+AGG 0.655130 3_1:-81981950 None:intergenic
ACATGGCCTGTATGTTGGAA+GGG 0.662222 3_1:-81979586 None:intergenic
TAGGGTTAGCAGTCAATCGG+AGG 0.663524 3_1:+81979475 Msa0380310:CDS
ATTCTTGTGTCATGGCAGCA+TGG 0.663708 3_1:-81981503 None:intergenic
ACTCATTCGAGAGTTGGATG+GGG 0.667637 3_1:+81979446 Msa0380310:CDS
CGTGTTGGAAGAACAGCCAG+AGG 0.669248 3_1:+81981821 Msa0380310:CDS
GATGTCTTGATAGCTACACC+TGG 0.674489 3_1:+81979911 Msa0380310:CDS
GCTCCTCATAGCAAAAGCAA+GGG 0.695618 3_1:+81982132 Msa0380310:three_prime_UTR
CAACTCGACACTTTAAACCA+GGG 0.695695 3_1:+81979884 Msa0380310:CDS
GTAATGGAAAGAAATCGGAA+GGG 0.700702 3_1:+81981908 Msa0380310:CDS
AATAACAGGAGCAAATGACA+TGG 0.700797 3_1:-81979603 None:intergenic
ACTTGTAACAGAGCTTCGCG+GGG 0.711965 3_1:+81981728 Msa0380310:intron
CATATTCACTTGGATCACGT+GGG 0.715544 3_1:-81981793 None:intergenic
AGAGAAGAGAATCAAAATGG+CGG 0.724812 3_1:+81979157 Msa0380310:exon
CTATCAAGACATCAACACCC+TGG 0.726139 3_1:-81979901 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCATAATATGAAATAAA+AGG + chr3_1:81980778-81980797 Msa0380310:intron 10.0%
!! ATTCATAATATGAAATAAAA+GGG + chr3_1:81980779-81980798 Msa0380310:intron 10.0%
!!! AATATTAATTTGAAATTAAG+TGG - chr3_1:81981088-81981107 None:intergenic 10.0%
!! CAAAAAATTACAAATATAAT+AGG + chr3_1:81982269-81982288 Msa0380310:three_prime_UTR 10.0%
!! GTTAAGATAAATTAAATCAT+TGG - chr3_1:81980098-81980117 None:intergenic 15.0%
!!! GTTATTGTTTTACTATTTAT+AGG + chr3_1:81980850-81980869 Msa0380310:intron 15.0%
!! TAATATATTCTTAAATTGCT+GGG + chr3_1:81981015-81981034 Msa0380310:intron 15.0%
!!! CTTTTTGTTACTTTTTATTT+TGG + chr3_1:81981377-81981396 Msa0380310:intron 15.0%
!!! TTATATTTGTAATTTTTTGC+AGG - chr3_1:81982268-81982287 None:intergenic 15.0%
!! CATGAAAATAAAATTTGATT+GGG - chr3_1:81982308-81982327 None:intergenic 15.0%
!! TCATGAAAATAAAATTTGAT+TGG - chr3_1:81982309-81982328 None:intergenic 15.0%
!!! TTTCAATTTTCAACAAGATA+AGG - chr3_1:81979123-81979142 None:intergenic 20.0%
!! CTAAAATCATTTAAAGACAT+TGG + chr3_1:81979515-81979534 Msa0380310:CDS 20.0%
!! AGAAATCAATTTATAACACA+TGG - chr3_1:81980062-81980081 None:intergenic 20.0%
!!! CTTTCTATTTTATTCATCTT+AGG + chr3_1:81980381-81980400 Msa0380310:intron 20.0%
!! ATTCAATTTAAATCTCATGT+GGG - chr3_1:81980495-81980514 None:intergenic 20.0%
!! AATTCAATTTAAATCTCATG+TGG - chr3_1:81980496-81980515 None:intergenic 20.0%
!! ATACACAATGATATGTATAA+AGG - chr3_1:81980534-81980553 None:intergenic 20.0%
!! TTTATACATATCATTGTGTA+TGG + chr3_1:81980533-81980552 Msa0380310:intron 20.0%
!! TCCAGTATTAAATTTATTAG+TGG - chr3_1:81980697-81980716 None:intergenic 20.0%
!!! GTATTTCTTTTTGAATAGTA+TGG - chr3_1:81980722-81980741 None:intergenic 20.0%
!!! GAAATTTTGAGAAATGTTTA+GGG - chr3_1:81980752-81980771 None:intergenic 20.0%
!!! TGAAATTTTGAGAAATGTTT+AGG - chr3_1:81980753-81980772 None:intergenic 20.0%
!! TTGTACTAGTTGTATATAAT+TGG - chr3_1:81980830-81980849 None:intergenic 20.0%
!! GCAATTTAAGAATATATTAC+AGG - chr3_1:81981014-81981033 None:intergenic 20.0%
!! GTAATATATTCTTAAATTGC+TGG + chr3_1:81981014-81981033 Msa0380310:intron 20.0%
!! AATATATTCTTAAATTGCTG+GGG + chr3_1:81981016-81981035 Msa0380310:intron 20.0%
!!! AAAAAGTAATGGAAAGAAAT+CGG + chr3_1:81981903-81981922 Msa0380310:CDS 20.0%
!! AGTTACTAAGTAATATGATT+AGG - chr3_1:81982211-81982230 None:intergenic 20.0%
!! ATATTACTTAGTAACTTCTT+AGG + chr3_1:81982215-81982234 Msa0380310:three_prime_UTR 20.0%
! AAAAGAGAAGAGAATCAAAA+TGG + chr3_1:81979154-81979173 Msa0380310:exon 25.0%
!! TGATTTTAGACTGAAAAAGT+TGG - chr3_1:81979504-81979523 None:intergenic 25.0%
! TTAACTAATCTAACATGGTA+TGG + chr3_1:81979971-81979990 Msa0380310:intron 25.0%
! AAAATGATAGGTGATAGAAA+AGG - chr3_1:81980008-81980027 None:intergenic 25.0%
! GATAAATTAAATCATTGGTG+CGG - chr3_1:81980093-81980112 None:intergenic 25.0%
!!! AGTTTGCTGTAAACATTTTT+TGG - chr3_1:81980261-81980280 None:intergenic 25.0%
!!! GTTGGTAACAATTATGAAAA+TGG + chr3_1:81980569-81980588 Msa0380310:intron 25.0%
! GCCACTAATAAATTTAATAC+TGG + chr3_1:81980693-81980712 Msa0380310:intron 25.0%
! AGATAATAGTAGATTGTAGT+GGG + chr3_1:81981192-81981211 Msa0380310:intron 25.0%
!!! ATTAAACCGTTTTGATAGAA+AGG + chr3_1:81981455-81981474 Msa0380310:CDS 25.0%
!!! TTAAACCGTTTTGATAGAAA+GGG + chr3_1:81981456-81981475 Msa0380310:CDS 25.0%
! GTGTTACAAATAATTCATTG+TGG + chr3_1:81981703-81981722 Msa0380310:intron 25.0%
!!! TTTTAATTGATTGCTTGGAA+AGG + chr3_1:81981994-81982013 Msa0380310:three_prime_UTR 25.0%
! TTTAATTGATTGCTTGGAAA+GGG + chr3_1:81981995-81982014 Msa0380310:three_prime_UTR 25.0%
GAGAGATTCAATCATGAAAT+CGG - chr3_1:81979546-81979565 None:intergenic 30.0%
AGCAATTATACAAGACTTTC+CGG - chr3_1:81979630-81979649 None:intergenic 30.0%
TAGACATTGAACGACAATTA+TGG - chr3_1:81979805-81979824 None:intergenic 30.0%
TGCACTTAACTAATCTAACA+TGG + chr3_1:81979966-81979985 Msa0380310:CDS 30.0%
GGTTTAGTCAACAAAATGAT+AGG - chr3_1:81980020-81980039 None:intergenic 30.0%
AATAAATATTGTGTGTCCAC+CGG - chr3_1:81980222-81980241 None:intergenic 30.0%
! AGTTTTTCCTGATTGTGAAA+TGG + chr3_1:81980287-81980306 Msa0380310:CDS 30.0%
CTGTGATATGAGAAAACATT+TGG + chr3_1:81980453-81980472 Msa0380310:intron 30.0%
AGGGATAGTAAAATCGAAAA+TGG + chr3_1:81980798-81980817 Msa0380310:intron 30.0%
TGAAATTAAGTGGTCATTAC+TGG - chr3_1:81981078-81981097 None:intergenic 30.0%
CAGATAATAGTAGATTGTAG+TGG + chr3_1:81981191-81981210 Msa0380310:intron 30.0%
GATAATAGTAGATTGTAGTG+GGG + chr3_1:81981193-81981212 Msa0380310:intron 30.0%
GAATTCCCTTTCTATCAAAA+CGG - chr3_1:81981464-81981483 None:intergenic 30.0%
! AAGGCATTTATCTTTGTTGT+TGG + chr3_1:81981860-81981879 Msa0380310:CDS 30.0%
!!! TTCCATTACTTTTTGTGCAA+GGG - chr3_1:81981897-81981916 None:intergenic 30.0%
!!! TTTCCATTACTTTTTGTGCA+AGG - chr3_1:81981898-81981917 None:intergenic 30.0%
!!! GTTGGTTTTAATTGATTGCT+TGG + chr3_1:81981989-81982008 Msa0380310:three_prime_UTR 30.0%
TATTGTAAGTCTAACATGCA+TGG + chr3_1:81982045-81982064 Msa0380310:three_prime_UTR 30.0%
AGAGAAGAGAATCAAAATGG+CGG + chr3_1:81979157-81979176 Msa0380310:exon 35.0%
! AAGAAGACAGAGTGTTTAGT+GGG - chr3_1:81979251-81979270 None:intergenic 35.0%
!! GGCGGATTTTGAATTTGAAT+TGG - chr3_1:81979294-81979313 None:intergenic 35.0%
! TTGTAGTTGTTTGCGTTTTG+TGG - chr3_1:81979393-81979412 None:intergenic 35.0%
AATAACAGGAGCAAATGACA+TGG - chr3_1:81979606-81979625 None:intergenic 35.0%
TGTCGTTCAATGTCTAAATC+TGG + chr3_1:81979809-81979828 Msa0380310:CDS 35.0%
TTCAATGTCTAAATCTGGCA+AGG + chr3_1:81979814-81979833 Msa0380310:CDS 35.0%
GTGACAAGCATAGATTTGAA+TGG - chr3_1:81979842-81979861 None:intergenic 35.0%
TTCAAATCTATGCTTGTCAC+TGG + chr3_1:81979842-81979861 Msa0380310:CDS 35.0%
!!! TGTCGAGTTGAGTTTTTTGT+CGG - chr3_1:81979874-81979893 None:intergenic 35.0%
TAGTTAAGTGCAAAAAGCCT+TGG - chr3_1:81979958-81979977 None:intergenic 35.0%
GGTAAATGACAAGTGTATTC+AGG - chr3_1:81980041-81980060 None:intergenic 35.0%
! ATGCTTGATTAGTTCTTCAC+CGG + chr3_1:81980200-81980219 Msa0380310:CDS 35.0%
GAACTTATTCGATGCATACT+AGG - chr3_1:81980321-81980340 None:intergenic 35.0%
AACGTATTCCCTAAATTTGC+TGG + chr3_1:81980418-81980437 Msa0380310:intron 35.0%
TACTATTTATAGGTCCGCTT+TGG + chr3_1:81980860-81980879 Msa0380310:intron 35.0%
!! CTTAAATTGCTGGGGTATTT+TGG + chr3_1:81981024-81981043 Msa0380310:intron 35.0%
TGCAGAACACAATAGTTCTT+GGG - chr3_1:81981301-81981320 None:intergenic 35.0%
TTGCAGAACACAATAGTTCT+TGG - chr3_1:81981302-81981321 None:intergenic 35.0%
! ACAAAGTATTCTGAACTCTC+AGG + chr3_1:81981321-81981340 Msa0380310:intron 35.0%
! ATAAACTGGGACACTTCTTT+TGG - chr3_1:81981567-81981586 None:intergenic 35.0%
!! AAAAGAAGTGTCCCAGTTTA+TGG + chr3_1:81981566-81981585 Msa0380310:CDS 35.0%
TATTCATCTGTTTATCTCGC+TGG + chr3_1:81981603-81981622 Msa0380310:intron 35.0%
GTGATCCAAGTGAATATGTA+CGG + chr3_1:81981798-81981817 Msa0380310:CDS 35.0%
ATCCCTTGCACAAAAAGTAA+TGG + chr3_1:81981892-81981911 Msa0380310:CDS 35.0%
! AGTAATGGAAAGAAATCGGA+AGG + chr3_1:81981907-81981926 Msa0380310:CDS 35.0%
! GTAATGGAAAGAAATCGGAA+GGG + chr3_1:81981908-81981927 Msa0380310:CDS 35.0%
TCATCGACCTAGAATATTGT+CGG - chr3_1:81982097-81982116 None:intergenic 35.0%
CTTAGGAATTGTATTACCAC+CGG + chr3_1:81982232-81982251 Msa0380310:three_prime_UTR 35.0%
!! AAAGCGTTGCTGTTTAGCAT+CGG + chr3_1:81979203-81979222 Msa0380310:CDS 40.0%
! GAAGAAGACAGAGTGTTTAG+TGG - chr3_1:81979252-81979271 None:intergenic 40.0%
!!! GAAACTCGTGGTTTTATCGA+CGG - chr3_1:81979315-81979334 None:intergenic 40.0%
GTCGATAAAACCACGAGTTT+CGG + chr3_1:81979314-81979333 Msa0380310:CDS 40.0%
!! TTTTAGTCTTCCGAAACTCG+TGG - chr3_1:81979327-81979346 None:intergenic 40.0%
!!! TGGTATTTTGCTTGGTTCTG+TGG - chr3_1:81979373-81979392 None:intergenic 40.0%
! GCGTTTTGTGGTATTTTGCT+TGG - chr3_1:81979381-81979400 None:intergenic 40.0%
AACTCATTCGAGAGTTGGAT+GGG + chr3_1:81979445-81979464 Msa0380310:CDS 40.0%
! CAATAGGGTTAGCAGTCAAT+CGG + chr3_1:81979472-81979491 Msa0380310:CDS 40.0%
AAATGACATGGCCTGTATGT+TGG - chr3_1:81979594-81979613 None:intergenic 40.0%
TCATTTGCTCCTGTTATTGC+CGG + chr3_1:81979608-81979627 Msa0380310:CDS 40.0%
TGTATAATTGCTGACCAGAG+TGG + chr3_1:81979638-81979657 Msa0380310:CDS 40.0%
! TGTCTGAGACGTTGAATGAT+TGG - chr3_1:81979692-81979711 None:intergenic 40.0%
CTCAGACAACAAGAACTACA+AGG + chr3_1:81979704-81979723 Msa0380310:CDS 40.0%
AAATCTATGCTTGTCACTGG+TGG + chr3_1:81979845-81979864 Msa0380310:CDS 40.0%
TCAACTCGACACTTTAAACC+AGG + chr3_1:81979883-81979902 Msa0380310:CDS 40.0%
CAACTCGACACTTTAAACCA+GGG + chr3_1:81979884-81979903 Msa0380310:CDS 40.0%
!! GGTTGATGAGGAAGAGAAAA+CGG - chr3_1:81979937-81979956 None:intergenic 40.0%
TTTCTCTTCCTCATCAACCA+AGG + chr3_1:81979938-81979957 Msa0380310:CDS 40.0%
ATTATGTTGCAGTGCTGTCT+TGG + chr3_1:81980128-81980147 Msa0380310:intron 40.0%
!! GATGAGGTTGATATCCTCTT+TGG + chr3_1:81980150-81980169 Msa0380310:CDS 40.0%
TCCTGATTGTGAAATGGTCA+TGG + chr3_1:81980293-81980312 Msa0380310:CDS 40.0%
CCTGATTGTGAAATGGTCAT+GGG + chr3_1:81980294-81980313 Msa0380310:CDS 40.0%
AATAAGTTCTCGCCTTGAAG+AGG + chr3_1:81980332-81980351 Msa0380310:CDS 40.0%
!! TATTCCCTAAATTTGCTGGC+TGG + chr3_1:81980422-81980441 Msa0380310:intron 40.0%
!! ATTCCCTAAATTTGCTGGCT+GGG + chr3_1:81980423-81980442 Msa0380310:intron 40.0%
AATCTCATGTGGGAGACAAA+AGG - chr3_1:81980485-81980504 None:intergenic 40.0%
CATATCATTGTGTATGGCAG+TGG + chr3_1:81980539-81980558 Msa0380310:intron 40.0%
GGTGCAGTCAACTCAATAAT+TGG + chr3_1:81980634-81980653 Msa0380310:intron 40.0%
AGTCAACTCAATAATTGGCG+CGG + chr3_1:81980639-81980658 Msa0380310:intron 40.0%
ATAATCAGCTGCTGTGTAAG+TGG + chr3_1:81981142-81981161 Msa0380310:intron 40.0%
TAATCAGCTGCTGTGTAAGT+GGG + chr3_1:81981143-81981162 Msa0380310:intron 40.0%
ATCACGGCTTACTAGTATGA+AGG + chr3_1:81981524-81981543 Msa0380310:CDS 40.0%
CATATTCACTTGGATCACGT+GGG - chr3_1:81981796-81981815 None:intergenic 40.0%
ACATATTCACTTGGATCACG+TGG - chr3_1:81981797-81981816 None:intergenic 40.0%
TCTCAATACTCATAAGCCGA+AGG - chr3_1:81981953-81981972 None:intergenic 40.0%
GTATTGAGAGCTGAAGAAGT+AGG + chr3_1:81981964-81981983 Msa0380310:exon 40.0%
AAGTCTAACATGCATGGCAA+AGG + chr3_1:81982051-81982070 Msa0380310:three_prime_UTR 40.0%
! GGCAAAGGAAGGAAATCTTT+TGG + chr3_1:81982066-81982085 Msa0380310:three_prime_UTR 40.0%
CAAAGACCATCTAAAGATGC+CGG - chr3_1:81982170-81982189 None:intergenic 40.0%
GGCATCTTTAGATGGTCTTT+GGG + chr3_1:81982169-81982188 Msa0380310:three_prime_UTR 40.0%
!!! TTTTGCAGGAGTGTCATTTC+CGG - chr3_1:81982254-81982273 None:intergenic 40.0%
GAAGAGAATCAAAATGGCGG+TGG + chr3_1:81979160-81979179 Msa0380310:exon 45.0%
!! TTGCTGTTTAGCATCGGAGT+TGG + chr3_1:81979209-81979228 Msa0380310:CDS 45.0%
! TGCTGTTTAGCATCGGAGTT+GGG + chr3_1:81979210-81979229 Msa0380310:CDS 45.0%
! GAGTGTTTAGTGGGTCTTCT+GGG - chr3_1:81979242-81979261 None:intergenic 45.0%
! AGAGTGTTTAGTGGGTCTTC+TGG - chr3_1:81979243-81979262 None:intergenic 45.0%
TCTGCAACTCATTCGAGAGT+TGG + chr3_1:81979440-81979459 Msa0380310:CDS 45.0%
CAACTCATTCGAGAGTTGGA+TGG + chr3_1:81979444-81979463 Msa0380310:CDS 45.0%
ACTCATTCGAGAGTTGGATG+GGG + chr3_1:81979446-81979465 Msa0380310:CDS 45.0%
AGTTGGATGGGGAGACAATA+GGG + chr3_1:81979457-81979476 Msa0380310:CDS 45.0%
GGCGAGTTAAAGAGAGGTTA+TGG - chr3_1:81979568-81979587 None:intergenic 45.0%
ACATGGCCTGTATGTTGGAA+GGG - chr3_1:81979589-81979608 None:intergenic 45.0%
CAAGACTTTCCGGCAATAAC+AGG - chr3_1:81979620-81979639 None:intergenic 45.0%
ATGTCTTTCCAGAACCACTC+TGG - chr3_1:81979655-81979674 None:intergenic 45.0%
GGTGCGAGTATAACAAGAGT+GGG - chr3_1:81979755-81979774 None:intergenic 45.0%
TGAGAAGCTAACTCAGCTGT+GGG - chr3_1:81979776-81979795 None:intergenic 45.0%
CTATCAAGACATCAACACCC+TGG - chr3_1:81979904-81979923 None:intergenic 45.0%
! GATGTCTTGATAGCTACACC+TGG + chr3_1:81979911-81979930 Msa0380310:CDS 45.0%
! GCAAAAAGCCTTGGTTGATG+AGG - chr3_1:81979949-81979968 None:intergenic 45.0%
TGATATCCTCTTTGGCGATG+AGG + chr3_1:81980158-81980177 Msa0380310:CDS 45.0%
! CTTGATTAGTTCTTCACCGG+TGG + chr3_1:81980203-81980222 Msa0380310:CDS 45.0%
CCCATGACCATTTCACAATC+AGG - chr3_1:81980297-81980316 None:intergenic 45.0%
AGTGAAACCTGACCTCTTCA+AGG - chr3_1:81980347-81980366 None:intergenic 45.0%
AAGCCCAGCCAGCAAATTTA+GGG - chr3_1:81980429-81980448 None:intergenic 45.0%
TATGGCAGTGGCAATACAGT+TGG + chr3_1:81980551-81980570 Msa0380310:intron 45.0%
ACCTGTCTCTGTTGTCAATG+CGG + chr3_1:81980600-81980619 Msa0380310:intron 45.0%
CTGTTGTCAATGCGGAAATG+CGG + chr3_1:81980608-81980627 Msa0380310:intron 45.0%
AAAGTTGAAAGCGGCCAAAG+CGG - chr3_1:81980877-81980896 None:intergenic 45.0%
CGCGTGTCAAAAGTTGAAAG+CGG - chr3_1:81980886-81980905 None:intergenic 45.0%
! GTAGATTGTAGTGGGGAAGA+TGG + chr3_1:81981200-81981219 Msa0380310:CDS 45.0%
ATTCTTGTGTCATGGCAGCA+TGG - chr3_1:81981506-81981525 None:intergenic 45.0%
CTGCCATGACACAAGAATCA+CGG + chr3_1:81981508-81981527 Msa0380310:CDS 45.0%
AAGCCGTGATTCTTGTGTCA+TGG - chr3_1:81981514-81981533 None:intergenic 45.0%
! AACTGGGACACTTCTTTTGG+TGG - chr3_1:81981564-81981583 None:intergenic 45.0%
! GTCCCAGTTTATGGTTTGCA+CGG + chr3_1:81981575-81981594 Msa0380310:CDS 45.0%
GTCCGTGCAAACCATAAACT+GGG - chr3_1:81981580-81981599 None:intergenic 45.0%
TGTCCGTGCAAACCATAAAC+TGG - chr3_1:81981581-81981600 None:intergenic 45.0%
! AGTTTATGGTTTGCACGGAC+AGG + chr3_1:81981580-81981599 Msa0380310:CDS 45.0%
CAACTTGTAACAGAGCTTCG+CGG + chr3_1:81981726-81981745 Msa0380310:intron 45.0%
AACTTGTAACAGAGCTTCGC+GGG + chr3_1:81981727-81981746 Msa0380310:intron 45.0%
! GGGAATTGACTTCACTAGAG+TGG + chr3_1:81981748-81981767 Msa0380310:CDS 45.0%
ACACGCCGTACATATTCACT+TGG - chr3_1:81981806-81981825 None:intergenic 45.0%
AGTGAATATGTACGGCGTGT+TGG + chr3_1:81981806-81981825 Msa0380310:CDS 45.0%
TCCACTGCATGATGTACCTT+CGG + chr3_1:81981934-81981953 Msa0380310:CDS 45.0%
GAGCTGAAGAAGTAGGAAGT+TGG + chr3_1:81981971-81981990 Msa0380310:three_prime_UTR 45.0%
CTAACATGCATGGCAAAGGA+AGG + chr3_1:81982055-81982074 Msa0380310:three_prime_UTR 45.0%
!! GGTAGCACCGACAATATTCT+AGG + chr3_1:81982087-81982106 Msa0380310:three_prime_UTR 45.0%
TCGATGAAACGTGCATTGCT+AGG + chr3_1:81982110-81982129 Msa0380310:three_prime_UTR 45.0%
GCTCCTCATAGCAAAAGCAA+GGG + chr3_1:81982132-81982151 Msa0380310:three_prime_UTR 45.0%
!! TAGCCCTTGCTTTTGCTATG+AGG - chr3_1:81982138-81982157 None:intergenic 45.0%
TGATTGCCGGCATCTTTAGA+TGG + chr3_1:81982161-81982180 Msa0380310:three_prime_UTR 45.0%
CGGCATCTTTAGATGGTCTT+TGG + chr3_1:81982168-81982187 Msa0380310:three_prime_UTR 45.0%
TCTTTAGATGGTCTTTGGGC+AGG + chr3_1:81982173-81982192 Msa0380310:three_prime_UTR 45.0%
! GCTGTTTAGCATCGGAGTTG+GGG + chr3_1:81979211-81979230 Msa0380310:CDS 50.0%
!!! ACTCGTGGTTTTATCGACGG+CGG - chr3_1:81979312-81979331 None:intergenic 50.0%
GAGTTGGATGGGGAGACAAT+AGG + chr3_1:81979456-81979475 Msa0380310:CDS 50.0%
! TAGGGTTAGCAGTCAATCGG+AGG + chr3_1:81979475-81979494 Msa0380310:CDS 50.0%
TGGAAGGGCGAGTTAAAGAG+AGG - chr3_1:81979574-81979593 None:intergenic 50.0%
AACTCGCCCTTCCAACATAC+AGG + chr3_1:81979580-81979599 Msa0380310:CDS 50.0%
GACATGGCCTGTATGTTGGA+AGG - chr3_1:81979590-81979609 None:intergenic 50.0%
ATTGCTGACCAGAGTGGTTC+TGG + chr3_1:81979644-81979663 Msa0380310:CDS 50.0%
GGGTGCGAGTATAACAAGAG+TGG - chr3_1:81979756-81979775 None:intergenic 50.0%
CTGAGAAGCTAACTCAGCTG+TGG - chr3_1:81979777-81979796 None:intergenic 50.0%
! CACAGCTGAGTTAGCTTCTC+AGG + chr3_1:81979775-81979794 Msa0380310:CDS 50.0%
ATGAGGAAGAGAAAACGGCC+AGG - chr3_1:81979932-81979951 None:intergenic 50.0%
TTGCAGTGCTGTCTTGGATG+AGG + chr3_1:81980134-81980153 Msa0380310:intron 50.0%
TGGCGATGAGGACTTCGAAA+AGG + chr3_1:81980170-81980189 Msa0380310:CDS 50.0%
CAAGCCCAGCCAGCAAATTT+AGG - chr3_1:81980430-81980449 None:intergenic 50.0%
! TCCGCATTGACAACAGAGAC+AGG - chr3_1:81980604-81980623 None:intergenic 50.0%
ACTCAATAATTGGCGCGGTG+CGG + chr3_1:81980644-81980663 Msa0380310:intron 50.0%
AAAAACAGGACCACCGCACT+AGG - chr3_1:81980938-81980957 None:intergenic 50.0%
!!! TGGGGTATTTTGGTGTGTGC+AGG + chr3_1:81981034-81981053 Msa0380310:intron 50.0%
ACTGGTCACTGAATCCAGCA+TGG - chr3_1:81981060-81981079 None:intergenic 50.0%
TGTGTCATGGCAGCATGGAA+AGG - chr3_1:81981501-81981520 None:intergenic 50.0%
ACTTGTAACAGAGCTTCGCG+GGG + chr3_1:81981728-81981747 Msa0380310:intron 50.0%
!! TTGGAAAGGGTGCTCTCAAC+TGG + chr3_1:81982008-81982027 Msa0380310:three_prime_UTR 50.0%
!! TGGAAAGGGTGCTCTCAACT+GGG + chr3_1:81982009-81982028 Msa0380310:three_prime_UTR 50.0%
GGCTCCTCATAGCAAAAGCA+AGG + chr3_1:81982131-81982150 Msa0380310:three_prime_UTR 50.0%
! GCAAGGGCTACATTGATTGC+CGG + chr3_1:81982148-81982167 Msa0380310:three_prime_UTR 50.0%
AAAATGGCGGTGGTTGCGCA+AGG + chr3_1:81979170-81979189 Msa0380310:exon 55.0%
! GTGGTTGCGCAAGGTGTTTG+TGG + chr3_1:81979179-81979198 Msa0380310:CDS 55.0%
CGAAGTCCTCATCGCCAAAG+AGG - chr3_1:81980167-81980186 None:intergenic 55.0%
GTTCTCGCCTTGAAGAGGTC+AGG + chr3_1:81980337-81980356 Msa0380310:intron 55.0%
CTCAATAATTGGCGCGGTGC+GGG + chr3_1:81980645-81980664 Msa0380310:intron 55.0%
! GGGGCACTATTTCGGTAGTG+CGG + chr3_1:81980671-81980690 Msa0380310:intron 55.0%
!! ACTTTTGACACGCGCTGACG+CGG + chr3_1:81980892-81980911 Msa0380310:intron 55.0%
CGGAGTGGAGCGGAAAAAAC+AGG - chr3_1:81980952-81980971 None:intergenic 55.0%
AGCTGCTCTTCTGCAGCTTG+CGG + chr3_1:81981262-81981281 Msa0380310:CDS 55.0%
CGTGTTGGAAGAACAGCCAG+AGG + chr3_1:81981821-81981840 Msa0380310:CDS 55.0%
!! AAGAACAGCCAGAGGTGCCA+GGG + chr3_1:81981829-81981848 Msa0380310:CDS 55.0%
! GCCGAAGGTACATCATGCAG+TGG - chr3_1:81981938-81981957 None:intergenic 55.0%
!! TGCAGGAGTGTCATTTCCGG+TGG - chr3_1:81982251-81982270 None:intergenic 55.0%
GTCAATGCGGAAATGCGGCG+CGG + chr3_1:81980613-81980632 Msa0380310:intron 60.0%
TCCGCTCCACTCCGCTATAG+CGG + chr3_1:81980958-81980977 Msa0380310:intron 60.0%
! ACCGCTATAGCGGAGTGGAG+CGG - chr3_1:81980962-81980981 None:intergenic 60.0%
AGCCACGTCGACCGCTATAG+CGG - chr3_1:81980972-81980991 None:intergenic 60.0%
TTGGTGTGTGCAGGCCATGC+TGG + chr3_1:81981043-81981062 Msa0380310:intron 60.0%
!! GAAGAACAGCCAGAGGTGCC+AGG + chr3_1:81981828-81981847 Msa0380310:CDS 60.0%
!! AGAACAGCCAGAGGTGCCAG+GGG + chr3_1:81981830-81981849 Msa0380310:CDS 60.0%
AAATGCCTTGCCCTGTCCCC+TGG - chr3_1:81981849-81981868 None:intergenic 60.0%
TAATTGGCGCGGTGCGGGAG+CGG + chr3_1:81980650-81980669 Msa0380310:intron 65.0%
! GCGGGAGCGGGGCACTATTT+CGG + chr3_1:81980663-81980682 Msa0380310:intron 65.0%
! CGTCGACCGCTATAGCGGAG+TGG - chr3_1:81980967-81980986 None:intergenic 65.0%
CTCCGCTATAGCGGTCGACG+TGG + chr3_1:81980967-81980986 Msa0380310:intron 65.0%
AATTGGCGCGGTGCGGGAGC+GGG + chr3_1:81980651-81980670 Msa0380310:intron 70.0%
TGACGCGGCCTGAGACACGC+CGG + chr3_1:81980907-81980926 Msa0380310:intron 70.0%
ACCACCGCACTAGGCCGAGC+CGG - chr3_1:81980929-81980948 None:intergenic 70.0%
!! AGCCAGAGGTGCCAGGGGAC+AGG + chr3_1:81981835-81981854 Msa0380310:CDS 70.0%
!! GCCAGAGGTGCCAGGGGACA+GGG + chr3_1:81981836-81981855 Msa0380310:CDS 70.0%
AGGTGCCAGGGGACAGGGCA+AGG + chr3_1:81981841-81981860 Msa0380310:CDS 70.0%
ATTGGCGCGGTGCGGGAGCG+GGG + chr3_1:81980652-81980671 Msa0380310:intron 75.0%
! CGGCCTGAGACACGCCGGCT+CGG + chr3_1:81980912-81980931 Msa0380310:intron 75.0%
AGGCCGAGCCGGCGTGTCTC+AGG - chr3_1:81980918-81980937 None:intergenic 75.0%
!! CACGCCGGCTCGGCCTAGTG+CGG + chr3_1:81980922-81980941 Msa0380310:intron 75.0%
GCCCTGTCCCCTGGCACCTC+TGG - chr3_1:81981840-81981859 None:intergenic 75.0%
!!! GCCGGCTCGGCCTAGTGCGG+TGG + chr3_1:81980925-81980944 Msa0380310:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 81979105 81982383 81979105 ID=Msa0380310;Name=Msa0380310
chr3_1 mRNA 81979105 81982383 81979105 ID=Msa0380310-mRNA-1;Parent=Msa0380310;Name=Msa0380310-mRNA-1;_AED=0.08;_eAED=0.08;_QI=68|1|1|1|1|1|5|413|522
chr3_1 exon 81979105 81979987 81979105 ID=Msa0380310-mRNA-1:exon:20842;Parent=Msa0380310-mRNA-1
chr3_1 exon 81980140 81980353 81980140 ID=Msa0380310-mRNA-1:exon:20843;Parent=Msa0380310-mRNA-1
chr3_1 exon 81981194 81981325 81981194 ID=Msa0380310-mRNA-1:exon:20844;Parent=Msa0380310-mRNA-1
chr3_1 exon 81981426 81981601 81981426 ID=Msa0380310-mRNA-1:exon:20845;Parent=Msa0380310-mRNA-1
chr3_1 exon 81981739 81982383 81981739 ID=Msa0380310-mRNA-1:exon:20846;Parent=Msa0380310-mRNA-1
chr3_1 five_prime_UTR 81979105 81979172 81979105 ID=Msa0380310-mRNA-1:five_prime_utr;Parent=Msa0380310-mRNA-1
chr3_1 CDS 81979173 81979987 81979173 ID=Msa0380310-mRNA-1:cds;Parent=Msa0380310-mRNA-1
chr3_1 CDS 81980140 81980353 81980140 ID=Msa0380310-mRNA-1:cds;Parent=Msa0380310-mRNA-1
chr3_1 CDS 81981194 81981325 81981194 ID=Msa0380310-mRNA-1:cds;Parent=Msa0380310-mRNA-1
chr3_1 CDS 81981426 81981601 81981426 ID=Msa0380310-mRNA-1:cds;Parent=Msa0380310-mRNA-1
chr3_1 CDS 81981739 81981970 81981739 ID=Msa0380310-mRNA-1:cds;Parent=Msa0380310-mRNA-1
chr3_1 three_prime_UTR 81981971 81982383 81981971 ID=Msa0380310-mRNA-1:three_prime_utr;Parent=Msa0380310-mRNA-1
Gene Sequence

>Msa0380310

ATGGCGGTGGTTGCGCAAGGTGTTTGTGGTAAAGCGTTGCTGTTTAGCATCGGAGTTGGGGTGAGACCCAGAAGACCCACTAAACACTCTGTCTTCTTCTTCGTTTCTAATTCAAAATCCAATTCAAATTCAAAATCCGCCGTCGATAAAACCACGAGTTTCGGAAGACTAAAAGTTGAGAAAGTGAATGCTCTCATCCACAGAACCAAGCAAAATACCACAAAACGCAAACAACTACAACTAGAAGATGAAGATGAAGACAACAATTCTGCAACTCATTCGAGAGTTGGATGGGGAGACAATAGGGTTAGCAGTCAATCGGAGGACACCAACTTTTTCAGTCTAAAATCATTTAAAGACATTGGATGCGCCGATTTCATGATTGAATCTCTCCATAACCTCTCTTTAACTCGCCCTTCCAACATACAGGCCATGTCATTTGCTCCTGTTATTGCCGGAAAGTCTTGTATAATTGCTGACCAGAGTGGTTCTGGAAAGACATTAGCTTATCTTGTACCAATCATTCAACGTCTCAGACAACAAGAACTACAAGGACTTCATAAATCTTCTTCACGATCTCCCACTCTTGTTATACTCGCACCCACAGCTGAGTTAGCTTCTCAGGTCTTCCATAATTGTCGTTCAATGTCTAAATCTGGCAAGGTTCCATTCAAATCTATGCTTGTCACTGGTGGCTTCCGACAAAAAACTCAACTCGACACTTTAAACCAGGGTGTTGATGTCTTGATAGCTACACCTGGCCGTTTTCTCTTCCTCATCAACCAAGGCTTTTTGCACTTAACTAATCTAACATGTGCTGTCTTGGATGAGGTTGATATCCTCTTTGGCGATGAGGACTTCGAAAAGGCTCTTCAATGCTTGATTAGTTCTTCACCGGTGGACACACAATATTTATTTGTAACTGCTACTTTACCAAAAAATGTTTACAGCAAACTTGTTCAAGTTTTTCCTGATTGTGAAATGGTCATGGGACCTAGTATGCATCGAATAAGTTCTCGCCTTGAAGAGATAATAGTAGATTGTAGTGGGGAAGATGGACAAGAAAAAACTCTCGACACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGCAGCTTGCGGAGAAGAATCGCGTCCCAAGAACTATTGTGTTCTGCAACAAAATTGAAACATGCAGAAAAGTTGAAAATGCATTAAACCGTTTTGATAGAAAGGGAATTCGCATGCAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCACGGCTTACTAGTATGAAGGAGTTTACACGTTCTCCACCAAAAGAAGTGTCCCAGTTTATGGTTTGCACGGACAGAGCTTCGCGGGGAATTGACTTCACTAGAGTGGATCATGTAATACTTTTTGACTACCCACGTGATCCAAGTGAATATGTACGGCGTGTTGGAAGAACAGCCAGAGGTGCCAGGGGACAGGGCAAGGCATTTATCTTTGTTGTTGGCAAGCAAGTATCCCTTGCACAAAAAGTAATGGAAAGAAATCGGAAGGGTCATCCACTGCATGATGTACCTTCGGCTTATGAGTATTGA
Protein sequence

>Msa0380310

MAVVAQGVCGKALLFSIGVGVRPRRPTKHSVFFFVSNSKSNSNSKSAVDKTTSFGRLKVEKVNALIHRTKQNTTKRKQLQLEDEDEDNNSATHSRVGWGDNRVSSQSEDTNFFSLKSFKDIGCADFMIESLHNLSLTRPSNIQAMSFAPVIAGKSCIIADQSGSGKTLAYLVPIIQRLRQQELQGLHKSSSRSPTLVILAPTAELASQVFHNCRSMSKSGKVPFKSMLVTGGFRQKTQLDTLNQGVDVLIATPGRFLFLINQGFLHLTNLTCAVLDEVDILFGDEDFEKALQCLISSSPVDTQYLFVTATLPKNVYSKLVQVFPDCEMVMGPSMHRISSRLEEIIVDCSGEDGQEKTLDTAFLNKKAALLQLAEKNRVPRTIVFCNKIETCRKVENALNRFDRKGIRMQVLPFHAAMTQESRLTSMKEFTRSPPKEVSQFMVCTDRASRGIDFTRVDHVILFDYPRDPSEYVRRVGRTARGARGQGKAFIFVVGKQVSLAQKVMERNRKGHPLHDVPSAYEY*