AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 110 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGAACTTTATGTATTT+TGG 0.087585 1_4:+54745760 Msa0170580:three_prime_UTR
ACATGAAGATTGAATGAATT+TGG 0.181587 1_4:-54743697 None:intergenic
CAAAATCTTCGTTCCTCTTC+TGG 0.189240 1_4:-54745412 None:intergenic
ACGACTCAAGCAGATGTTTA+AGG 0.208325 1_4:-54743744 None:intergenic
ATTGCTAGTTAGTTGTAAAA+AGG 0.242009 1_4:-54745488 None:intergenic
TGATCAGTTCACAGAAGTTT+TGG 0.257845 1_4:-54744680 None:intergenic
AGTTGATGTACTGAACATTT+TGG 0.258107 1_4:+54745657 Msa0170580:three_prime_UTR
ATGATTAAGGTTTGTTCGTT+AGG 0.350942 1_4:+54745941 Msa0170580:three_prime_UTR
TGTTGGTAGTCTGAACCTTT+TGG 0.370855 1_4:+54745724 Msa0170580:three_prime_UTR
TGCCTCCTCTGTCGAGATCT+TGG 0.371412 1_4:+54743640 Msa0170580:CDS
ACGAAAGCAGCATATCACTA+TGG 0.380180 1_4:+54744597 Msa0170580:three_prime_UTR
GAGGTTGGAGAGGAGTTAAT+AGG 0.412700 1_4:+54744804 Msa0170580:three_prime_UTR
ATCATCTTCCTCATGGAAAT+CGG 0.417547 1_4:-54743907 None:intergenic
GACTGAACTATGGCAGGATT+CGG 0.426677 1_4:+54745366 Msa0170580:three_prime_UTR
AGTGAACGGACGGTGTTAGA+AGG 0.426775 1_4:-54743786 None:intergenic
TTTGTCAACTATCTCTGAAA+AGG 0.431947 1_4:+54745543 Msa0170580:three_prime_UTR
CTGCTCTCCCTCCCCTCTCA+TGG 0.441584 1_4:+54743593 Msa0170580:CDS
GAGGAGTTAATAGGAGAAGA+AGG 0.445991 1_4:+54744813 Msa0170580:three_prime_UTR
ATGTTTAAGGTTGAAGTTGT+CGG 0.447779 1_4:-54743731 None:intergenic
ATGGCAGGATTCGGTGGTTA+CGG 0.452060 1_4:+54745375 Msa0170580:three_prime_UTR
ATAGGAGAAGAAGGTGGCAG+AGG 0.454543 1_4:+54744822 Msa0170580:three_prime_UTR
GCAGTCTTCAACCAGCTTCA+AGG 0.457614 1_4:-54745576 None:intergenic
TTGAAGACTGCGACAACATA+TGG 0.463057 1_4:+54745588 Msa0170580:three_prime_UTR
GGATTCGGTGGTTACGGAGG+TGG 0.464516 1_4:+54745381 Msa0170580:three_prime_UTR
TTCAACCAGCTTCAAGGATG+TGG 0.465702 1_4:-54745570 None:intergenic
TTTCCATGAGGAAGATGATT+CGG 0.475294 1_4:+54743911 Msa0170580:three_prime_UTR
TGGGAGAGAGCAACGGAGGT+TGG 0.478823 1_4:+54744789 Msa0170580:three_prime_UTR
GCATTTGGTTGCAACATACT+TGG 0.480786 1_4:+54745875 Msa0170580:three_prime_UTR
AATAAGAGAAAAGAGAAAAG+AGG 0.482203 1_4:-54743670 None:intergenic
TTATAGTAGATGCTTGATAA+TGG 0.494407 1_4:+54745515 Msa0170580:three_prime_UTR
TAGGAGAAGAAGGTGGCAGA+GGG 0.494590 1_4:+54744823 Msa0170580:three_prime_UTR
TTTGTGAGTTCTAAGGTAGA+TGG 0.494808 1_4:+54744403 Msa0170580:three_prime_UTR
CTCCCACCTCACCACTATCA+TGG 0.495212 1_4:-54744772 None:intergenic
CGAAAGCAGCATATCACTAT+GGG 0.497210 1_4:+54744598 Msa0170580:three_prime_UTR
GAGAAGAAGGTGGCAGAGGG+AGG 0.498422 1_4:+54744826 Msa0170580:three_prime_UTR
ATGAGCAAGTGTGCTGCATA+TGG 0.501067 1_4:+54745853 Msa0170580:three_prime_UTR
AGTGTGCTGCATATGGCATT+TGG 0.502436 1_4:+54745860 Msa0170580:three_prime_UTR
ATACCATTCCCTACACCAAA+AGG 0.504862 1_4:-54745739 None:intergenic
TTGGTTGCAACATACTTGGT+TGG 0.505063 1_4:+54745879 Msa0170580:three_prime_UTR
GAGATGAAAACGATAACAAT+GGG 0.508666 1_4:-54743564 None:intergenic
TCACCGAATCATCTTCCTCA+TGG 0.508725 1_4:-54743914 None:intergenic
CAATGACGGTGTCTGAGGAC+GGG 0.511301 1_4:+54744746 Msa0170580:three_prime_UTR
GAAAGGAAGATGCCATGAGA+GGG 0.517135 1_4:-54743605 None:intergenic
TCAATTCTTAGCCAATGCCT+TGG 0.518556 1_4:-54743529 None:intergenic
CGAGGTGGTGGTATGATTTG+AGG 0.518770 1_4:+54744714 Msa0170580:three_prime_UTR
AGAAAGGAAGATGCCATGAG+AGG 0.523382 1_4:-54743606 None:intergenic
TGAACAGCAACATCGATGTC+AGG 0.525759 1_4:-54743831 None:intergenic
ATAGTTCAGTCTAAACCTCC+TGG 0.528493 1_4:-54745354 None:intergenic
AGGCAAGGTAGAGCAGAGAA+AGG 0.529328 1_4:-54743622 None:intergenic
GGTTTAGACTGAACTATGGC+AGG 0.535617 1_4:+54745360 Msa0170580:three_prime_UTR
CAACACACCGCTCAATTCCA+AGG 0.536993 1_4:+54743512 None:intergenic
AGGAGGTTTAGACTGAACTA+TGG 0.538594 1_4:+54745356 Msa0170580:three_prime_UTR
GGCTTTGACAAGGTCAGCGG+TGG 0.545196 1_4:+54745441 Msa0170580:three_prime_UTR
GAGAAATAGAAAATGAAAGA+TGG 0.546411 1_4:+54745330 Msa0170580:three_prime_UTR
GAAGATGCCATGAGAGGGGA+GGG 0.548739 1_4:-54743600 None:intergenic
GCAATGACGGTGTCTGAGGA+CGG 0.548919 1_4:+54744745 Msa0170580:three_prime_UTR
ATGATTTGAGAGCGAGGTGG+TGG 0.550445 1_4:+54744702 Msa0170580:three_prime_UTR
AGGACGGGCAGCCATGATAG+TGG 0.551298 1_4:+54744761 Msa0170580:three_prime_UTR
ACCGCTCAATTCCAAGGCAT+TGG 0.553570 1_4:+54743518 None:intergenic
GAGAACCACATCCTTGAAGC+TGG 0.555008 1_4:+54745565 Msa0170580:three_prime_UTR
AGCGTTCTGCAACCTTTCCA+TGG 0.556494 1_4:+54743983 Msa0170580:three_prime_UTR
TAGAAAATGAAAGATGGTCC+AGG 0.561434 1_4:+54745336 Msa0170580:three_prime_UTR
GAGAGCAACGGAGGTTGGAG+AGG 0.562647 1_4:+54744794 Msa0170580:three_prime_UTR
TGAGATGAAAACGATAACAA+TGG 0.565809 1_4:-54743565 None:intergenic
AAATTCATTCAATCTTCATG+TGG 0.566495 1_4:+54743699 Msa0170580:CDS
CAGCCATGATAGTGGTGAGG+TGG 0.566700 1_4:+54744769 Msa0170580:three_prime_UTR
GGTGGTTACGGAGGTGGTGA+CGG 0.577502 1_4:+54745387 Msa0170580:three_prime_UTR
GGAAGATGCCATGAGAGGGG+AGG 0.579223 1_4:-54743601 None:intergenic
GGTGGTGACGGTGCCAGAAG+AGG 0.583848 1_4:+54745399 Msa0170580:three_prime_UTR
TGCGACTCACTAAGAAAAGG+TGG 0.584679 1_4:+54744635 Msa0170580:three_prime_UTR
AGATCTCGACAGAGGAGGCA+AGG 0.585218 1_4:-54743637 None:intergenic
CGGAGGATGATTTGAGTGAA+CGG 0.585482 1_4:-54743800 None:intergenic
TGACAAGGTCAGCGGTGGAG+TGG 0.588046 1_4:+54745446 Msa0170580:three_prime_UTR
GGTATGATTTGAGGTGAGGA+TGG 0.589014 1_4:+54744723 Msa0170580:three_prime_UTR
AGTTGCGACTCACTAAGAAA+AGG 0.593642 1_4:+54744632 Msa0170580:three_prime_UTR
AGGCGTAATCAGAATCATGT+TGG 0.594161 1_4:+54745707 Msa0170580:three_prime_UTR
CTTAAAGTGAACATACGTGC+TGG 0.595313 1_4:+54744562 Msa0170580:intron
GCCAATGCCTTGGAATTGAG+CGG 0.598969 1_4:-54743519 None:intergenic
GGTGAGGTGGGAGAGAGCAA+CGG 0.601847 1_4:+54744782 Msa0170580:three_prime_UTR
GCAGGATTCGGTGGTTACGG+AGG 0.603271 1_4:+54745378 Msa0170580:three_prime_UTR
AGCCATGATAGTGGTGAGGT+GGG 0.604715 1_4:+54744770 Msa0170580:three_prime_UTR
CTAAAAGATGCTAAGCGTGT+AGG 0.605875 1_4:-54745612 None:intergenic
TTTGATTGGTGGCTTTGACA+AGG 0.607573 1_4:+54745431 Msa0170580:three_prime_UTR
GGCATTGGCTAAGAATTGAA+AGG 0.607613 1_4:+54743533 Msa0170580:five_prime_UTR
TTAAAGTGAACATACGTGCT+GGG 0.612799 1_4:+54744563 Msa0170580:intron
GTTGCGACGTTACCATGGAA+AGG 0.612958 1_4:-54743995 None:intergenic
AACGGACGGTGTTAGAAGGA+AGG 0.613076 1_4:-54743782 None:intergenic
TGGTGGTATGATTTGAGGTG+AGG 0.620316 1_4:+54744719 Msa0170580:three_prime_UTR
AAGGTGGGAATAAACCATGA+TGG 0.621476 1_4:+54744651 Msa0170580:three_prime_UTR
TGAACTATGGCAGGATTCGG+TGG 0.622696 1_4:+54745369 Msa0170580:three_prime_UTR
GGTGGCTTTGACAAGGTCAG+CGG 0.623212 1_4:+54745438 Msa0170580:three_prime_UTR
TGAGAGGGGAGGGAGAGCAG+AGG 0.628773 1_4:-54743590 None:intergenic
TGAGGTGAGGATGGCAATGA+CGG 0.637651 1_4:+54744732 Msa0170580:three_prime_UTR
GACCAAGATCTCGACAGAGG+AGG 0.638280 1_4:-54743642 None:intergenic
GATGGCAATGACGGTGTCTG+AGG 0.638923 1_4:+54744741 Msa0170580:three_prime_UTR
GAGTTAATAGGAGAAGAAGG+TGG 0.646429 1_4:+54744816 Msa0170580:three_prime_UTR
GCGACTCACTAAGAAAAGGT+GGG 0.647264 1_4:+54744636 Msa0170580:three_prime_UTR
AAAGGAAGATGCCATGAGAG+GGG 0.654025 1_4:-54743604 None:intergenic
GGATGATTTGAGTGAACGGA+CGG 0.654168 1_4:-54743796 None:intergenic
ATCGATGTCAGGTTTAGATG+CGG 0.658365 1_4:-54743820 None:intergenic
AGTAATGTTGTAACACCATG+AGG 0.668059 1_4:-54745821 None:intergenic
GATGTCAGGTTTAGATGCGG+AGG 0.668691 1_4:-54743817 None:intergenic
CTGATCATGATTTGAGAGCG+AGG 0.671210 1_4:+54744696 Msa0170580:three_prime_UTR
GAGGTGGGAGAGAGCAACGG+AGG 0.689396 1_4:+54744785 Msa0170580:three_prime_UTR
GGGCAGCCATGATAGTGGTG+AGG 0.692492 1_4:+54744766 Msa0170580:three_prime_UTR
AAAATGAAAGATGGTCCAGG+AGG 0.692780 1_4:+54745339 Msa0170580:three_prime_UTR
ATTGACCAAGATCTCGACAG+AGG 0.711668 1_4:-54743645 None:intergenic
GAAAGCAGCATATCACTATG+GGG 0.747978 1_4:+54744599 Msa0170580:three_prime_UTR
ATCATGATTTGAGAGCGAGG+TGG 0.795850 1_4:+54744699 Msa0170580:three_prime_UTR
AGATTGAATTGTGAACAACA+TGG 0.838604 1_4:+54744430 Msa0170580:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATGAAAAAAATAGTATTT+AGG - chr1_4:54744033-54744052 None:intergenic 15.0%
!!! TTAGTTTCTTTAATTTCAAT+TGG + chr1_4:54744094-54744113 Msa0170580:intron 15.0%
!!! TAGTTTCTTTAATTTCAATT+GGG + chr1_4:54744095-54744114 Msa0170580:intron 15.0%
!! AAAAAAAAGATTATAAGGAA+AGG - chr1_4:54744918-54744937 None:intergenic 15.0%
!! TATATATTCAAGATTGTAAA+TGG + chr1_4:54745135-54745154 Msa0170580:intron 15.0%
!! ATATATTCAAGATTGTAAAT+GGG + chr1_4:54745136-54745155 Msa0170580:intron 15.0%
!!! TTAGTTTGAGTTTTATATTT+TGG + chr1_4:54745631-54745650 Msa0170580:three_prime_UTR 15.0%
!!! ATTATGAACTTTATGTATTT+TGG + chr1_4:54745760-54745779 Msa0170580:three_prime_UTR 15.0%
!!! ATCATAGATCATTTTTTAAA+AGG - chr1_4:54745926-54745945 None:intergenic 15.0%
!! TAAAAAATGATCTATGATTA+AGG + chr1_4:54745928-54745947 Msa0170580:three_prime_UTR 15.0%
!! AAAAAAATAGTATTTAGGAG+AGG - chr1_4:54744028-54744047 None:intergenic 20.0%
!! AATACACAAAAACAAATCAA+GGG - chr1_4:54744179-54744198 None:intergenic 20.0%
!! AAAAAAACATAACTTTAGAC+CGG - chr1_4:54744202-54744221 None:intergenic 20.0%
!! AAGTTACAATTTGACAATAA+AGG - chr1_4:54744281-54744300 None:intergenic 20.0%
!! AAGAAATGAAAAAGAAAATG+AGG - chr1_4:54744873-54744892 None:intergenic 20.0%
!! ATATATTTACAAGTGTTTGT+TGG + chr1_4:54744994-54745013 Msa0170580:intron 20.0%
!! AGAAAAATAAATCACAAAGA+TGG - chr1_4:54745111-54745130 None:intergenic 20.0%
!!! TTGGTTTCAATCAATTTTTT+TGG + chr1_4:54745898-54745917 Msa0170580:three_prime_UTR 20.0%
! AATAAGAGAAAAGAGAAAAG+AGG - chr1_4:54743673-54743692 None:intergenic 25.0%
! ACATGAAGATTGAATGAATT+TGG - chr1_4:54743700-54743719 None:intergenic 25.0%
! AAATTCATTCAATCTTCATG+TGG + chr1_4:54743699-54743718 Msa0170580:CDS 25.0%
!!! TTTAACGAATGTCATTTTGT+GGG - chr1_4:54743955-54743974 None:intergenic 25.0%
!!! TTTTAACGAATGTCATTTTG+TGG - chr1_4:54743956-54743975 None:intergenic 25.0%
! GAATACACAAAAACAAATCA+AGG - chr1_4:54744180-54744199 None:intergenic 25.0%
!!! TGATTTGTTTTTGTGTATTC+CGG + chr1_4:54744180-54744199 Msa0170580:intron 25.0%
!!! GGTCTAAAGTTATGTTTTTT+TGG + chr1_4:54744201-54744220 Msa0170580:intron 25.0%
! AGTAACATTGACACAAAATA+GGG - chr1_4:54744351-54744370 None:intergenic 25.0%
! AAGTAACATTGACACAAAAT+AGG - chr1_4:54744352-54744371 None:intergenic 25.0%
!!! GAGTTGATTTTATGCTAATT+TGG + chr1_4:54744493-54744512 Msa0170580:intron 25.0%
! GGAGGAAAAAAAAGATTATA+AGG - chr1_4:54744923-54744942 None:intergenic 25.0%
! GAGAAATAGAAAATGAAAGA+TGG + chr1_4:54745330-54745349 Msa0170580:three_prime_UTR 25.0%
! ATTGCTAGTTAGTTGTAAAA+AGG - chr1_4:54745491-54745510 None:intergenic 25.0%
! TTATAGTAGATGCTTGATAA+TGG + chr1_4:54745515-54745534 Msa0170580:three_prime_UTR 25.0%
GAGATGAAAACGATAACAAT+GGG - chr1_4:54743567-54743586 None:intergenic 30.0%
TGAGATGAAAACGATAACAA+TGG - chr1_4:54743568-54743587 None:intergenic 30.0%
! ATGTTTAAGGTTGAAGTTGT+CGG - chr1_4:54743734-54743753 None:intergenic 30.0%
! GATTTTTATTCTCAGCACAT+AGG + chr1_4:54744071-54744090 Msa0170580:intron 30.0%
TTTCACTTAGATTTGATCTG+TGG + chr1_4:54744227-54744246 Msa0170580:intron 30.0%
! TCGAAATTTGTGTTTTCAAC+AGG + chr1_4:54744376-54744395 Msa0170580:intron 30.0%
AGATTGAATTGTGAACAACA+TGG + chr1_4:54744430-54744449 Msa0170580:three_prime_UTR 30.0%
ATGCTCTTTAATCCATTTAG+AGG + chr1_4:54745030-54745049 Msa0170580:intron 30.0%
! ATGCAATTGATTCCTCTAAA+TGG - chr1_4:54745045-54745064 None:intergenic 30.0%
AATTAGAGAATGATACCTAC+TGG - chr1_4:54745200-54745219 None:intergenic 30.0%
GGTATCATTCTCTAATTGTT+TGG + chr1_4:54745203-54745222 Msa0170580:intron 30.0%
ATAGATTGTATTCTTCTCCA+AGG + chr1_4:54745302-54745321 Msa0170580:intron 30.0%
! TTTCTATTTCTCTACTACCT+TGG - chr1_4:54745322-54745341 None:intergenic 30.0%
! TTTGTCAACTATCTCTGAAA+AGG + chr1_4:54745543-54745562 Msa0170580:three_prime_UTR 30.0%
!! AGTTGATGTACTGAACATTT+TGG + chr1_4:54745657-54745676 Msa0170580:three_prime_UTR 30.0%
! ATGATTAAGGTTTGTTCGTT+AGG + chr1_4:54745941-54745960 Msa0170580:three_prime_UTR 30.0%
!!! TCGCTTCAATCGATGTTTTT+TGG + chr1_4:54743882-54743901 Msa0170580:three_prime_UTR 35.0%
ATCATCTTCCTCATGGAAAT+CGG - chr1_4:54743910-54743929 None:intergenic 35.0%
TTTCCATGAGGAAGATGATT+CGG + chr1_4:54743911-54743930 Msa0170580:three_prime_UTR 35.0%
AGTATTTAGGAGAGGAAGAA+GGG - chr1_4:54744020-54744039 None:intergenic 35.0%
TAGTATTTAGGAGAGGAAGA+AGG - chr1_4:54744021-54744040 None:intergenic 35.0%
!! TTTGTGAGTTCTAAGGTAGA+TGG + chr1_4:54744403-54744422 Msa0170580:three_prime_UTR 35.0%
!!! GGTGAGTTTTGTTTAATCGT+TGG + chr1_4:54744451-54744470 Msa0170580:intron 35.0%
CAAATGAGCATGGAATCAAA+CGG - chr1_4:54744534-54744553 None:intergenic 35.0%
AGCACAAAATCAAATGAGCA+TGG - chr1_4:54744544-54744563 None:intergenic 35.0%
TTAAAGTGAACATACGTGCT+GGG + chr1_4:54744563-54744582 Msa0170580:intron 35.0%
! TGATCAGTTCACAGAAGTTT+TGG - chr1_4:54744683-54744702 None:intergenic 35.0%
CCATTCAATAGTGAAGTGAA+GGG - chr1_4:54744944-54744963 None:intergenic 35.0%
GGAGAAGAATACAATCTATG+AGG - chr1_4:54745301-54745320 None:intergenic 35.0%
TAGAAAATGAAAGATGGTCC+AGG + chr1_4:54745336-54745355 Msa0170580:three_prime_UTR 35.0%
!! AGAGGAACGAAGATTTTGAT+TGG + chr1_4:54745417-54745436 Msa0170580:three_prime_UTR 35.0%
!! CATTTTGGTATAGTTTGTCG+AGG + chr1_4:54745672-54745691 Msa0170580:three_prime_UTR 35.0%
! ATTTTGCATTGCATTCCTCA+TGG + chr1_4:54745806-54745825 Msa0170580:three_prime_UTR 35.0%
AGTAATGTTGTAACACCATG+AGG - chr1_4:54745824-54745843 None:intergenic 35.0%
AGCACACTTGCTCATAAAAA+AGG - chr1_4:54745848-54745867 None:intergenic 35.0%
TCAATTCTTAGCCAATGCCT+TGG - chr1_4:54743532-54743551 None:intergenic 40.0%
!! GGCATTGGCTAAGAATTGAA+AGG + chr1_4:54743533-54743552 Msa0170580:five_prime_UTR 40.0%
ACGACTCAAGCAGATGTTTA+AGG - chr1_4:54743747-54743766 None:intergenic 40.0%
ATCGATGTCAGGTTTAGATG+CGG - chr1_4:54743823-54743842 None:intergenic 40.0%
!!! TTTTGGTTCCGATTTCCATG+AGG + chr1_4:54743899-54743918 Msa0170580:three_prime_UTR 40.0%
! AGGTGCTTTTGTGAGTTCTA+AGG + chr1_4:54744396-54744415 Msa0170580:intron 40.0%
CTTAAAGTGAACATACGTGC+TGG + chr1_4:54744562-54744581 Msa0170580:intron 40.0%
ACGAAAGCAGCATATCACTA+TGG + chr1_4:54744597-54744616 Msa0170580:three_prime_UTR 40.0%
CGAAAGCAGCATATCACTAT+GGG + chr1_4:54744598-54744617 Msa0170580:three_prime_UTR 40.0%
GAAAGCAGCATATCACTATG+GGG + chr1_4:54744599-54744618 Msa0170580:three_prime_UTR 40.0%
AGTTGCGACTCACTAAGAAA+AGG + chr1_4:54744632-54744651 Msa0170580:three_prime_UTR 40.0%
AAGGTGGGAATAAACCATGA+TGG + chr1_4:54744651-54744670 Msa0170580:three_prime_UTR 40.0%
!!! AGTTTTGGAGAGAACCATCA+TGG - chr1_4:54744668-54744687 None:intergenic 40.0%
GAGGAGTTAATAGGAGAAGA+AGG + chr1_4:54744813-54744832 Msa0170580:three_prime_UTR 40.0%
GAGTTAATAGGAGAAGAAGG+TGG + chr1_4:54744816-54744835 Msa0170580:three_prime_UTR 40.0%
TTCAATAGTGAAGTGAAGGG+AGG - chr1_4:54744941-54744960 None:intergenic 40.0%
CCCTTCACTTCACTATTGAA+TGG + chr1_4:54744941-54744960 Msa0170580:intron 40.0%
GCCATTCAATAGTGAAGTGA+AGG - chr1_4:54744945-54744964 None:intergenic 40.0%
CTGCATGGCATAAAACTACA+TGG - chr1_4:54745167-54745186 None:intergenic 40.0%
ACTGGCATCATAAAACTGCA+TGG - chr1_4:54745182-54745201 None:intergenic 40.0%
!! TGCAGTTTTATGATGCCAGT+AGG + chr1_4:54745182-54745201 Msa0170580:intron 40.0%
AAAATGAAAGATGGTCCAGG+AGG + chr1_4:54745339-54745358 Msa0170580:three_prime_UTR 40.0%
ATAGTTCAGTCTAAACCTCC+TGG - chr1_4:54745357-54745376 None:intergenic 40.0%
AGGAGGTTTAGACTGAACTA+TGG + chr1_4:54745356-54745375 Msa0170580:three_prime_UTR 40.0%
CAAAATCTTCGTTCCTCTTC+TGG - chr1_4:54745415-54745434 None:intergenic 40.0%
!!! GGAACGAAGATTTTGATTGG+TGG + chr1_4:54745420-54745439 Msa0170580:three_prime_UTR 40.0%
!! TTTGATTGGTGGCTTTGACA+AGG + chr1_4:54745431-54745450 Msa0170580:three_prime_UTR 40.0%
TTGAAGACTGCGACAACATA+TGG + chr1_4:54745588-54745607 Msa0170580:three_prime_UTR 40.0%
CTAAAAGATGCTAAGCGTGT+AGG - chr1_4:54745615-54745634 None:intergenic 40.0%
!!! TGTCGAGGTGTTGTGTTTTA+AGG + chr1_4:54745687-54745706 Msa0170580:three_prime_UTR 40.0%
AGGCGTAATCAGAATCATGT+TGG + chr1_4:54745707-54745726 Msa0170580:three_prime_UTR 40.0%
!!! TGTTGGTAGTCTGAACCTTT+TGG + chr1_4:54745724-54745743 Msa0170580:three_prime_UTR 40.0%
!! TAGTCTGAACCTTTTGGTGT+AGG + chr1_4:54745730-54745749 Msa0170580:three_prime_UTR 40.0%
!! AGTCTGAACCTTTTGGTGTA+GGG + chr1_4:54745731-54745750 Msa0170580:three_prime_UTR 40.0%
ATACCATTCCCTACACCAAA+AGG - chr1_4:54745742-54745761 None:intergenic 40.0%
GCATTTGGTTGCAACATACT+TGG + chr1_4:54745875-54745894 Msa0170580:three_prime_UTR 40.0%
TTGGTTGCAACATACTTGGT+TGG + chr1_4:54745879-54745898 Msa0170580:three_prime_UTR 40.0%
AAAGGAAGATGCCATGAGAG+GGG - chr1_4:54743607-54743626 None:intergenic 45.0%
GAAAGGAAGATGCCATGAGA+GGG - chr1_4:54743608-54743627 None:intergenic 45.0%
AGAAAGGAAGATGCCATGAG+AGG - chr1_4:54743609-54743628 None:intergenic 45.0%
ATTGACCAAGATCTCGACAG+AGG - chr1_4:54743648-54743667 None:intergenic 45.0%
GGATGATTTGAGTGAACGGA+CGG - chr1_4:54743799-54743818 None:intergenic 45.0%
CGGAGGATGATTTGAGTGAA+CGG - chr1_4:54743803-54743822 None:intergenic 45.0%
TGAACAGCAACATCGATGTC+AGG - chr1_4:54743834-54743853 None:intergenic 45.0%
TCACCGAATCATCTTCCTCA+TGG - chr1_4:54743917-54743936 None:intergenic 45.0%
TGCGACTCACTAAGAAAAGG+TGG + chr1_4:54744635-54744654 Msa0170580:three_prime_UTR 45.0%
GCGACTCACTAAGAAAAGGT+GGG + chr1_4:54744636-54744655 Msa0170580:three_prime_UTR 45.0%
CTGATCATGATTTGAGAGCG+AGG + chr1_4:54744696-54744715 Msa0170580:three_prime_UTR 45.0%
ATCATGATTTGAGAGCGAGG+TGG + chr1_4:54744699-54744718 Msa0170580:three_prime_UTR 45.0%
! TGGTGGTATGATTTGAGGTG+AGG + chr1_4:54744719-54744738 Msa0170580:three_prime_UTR 45.0%
! GGTATGATTTGAGGTGAGGA+TGG + chr1_4:54744723-54744742 Msa0170580:three_prime_UTR 45.0%
GAGGTTGGAGAGGAGTTAAT+AGG + chr1_4:54744804-54744823 Msa0170580:three_prime_UTR 45.0%
GGTTTAGACTGAACTATGGC+AGG + chr1_4:54745360-54745379 Msa0170580:three_prime_UTR 45.0%
GACTGAACTATGGCAGGATT+CGG + chr1_4:54745366-54745385 Msa0170580:three_prime_UTR 45.0%
TTCAACCAGCTTCAAGGATG+TGG - chr1_4:54745573-54745592 None:intergenic 45.0%
!! GAACCTTTTGGTGTAGGGAA+TGG + chr1_4:54745736-54745755 Msa0170580:three_prime_UTR 45.0%
ATGAGCAAGTGTGCTGCATA+TGG + chr1_4:54745853-54745872 Msa0170580:three_prime_UTR 45.0%
AGTGTGCTGCATATGGCATT+TGG + chr1_4:54745860-54745879 Msa0170580:three_prime_UTR 45.0%
AGGCAAGGTAGAGCAGAGAA+AGG - chr1_4:54743625-54743644 None:intergenic 50.0%
! AACGGACGGTGTTAGAAGGA+AGG - chr1_4:54743785-54743804 None:intergenic 50.0%
! AGTGAACGGACGGTGTTAGA+AGG - chr1_4:54743789-54743808 None:intergenic 50.0%
GATGTCAGGTTTAGATGCGG+AGG - chr1_4:54743820-54743839 None:intergenic 50.0%
AGCGTTCTGCAACCTTTCCA+TGG + chr1_4:54743983-54744002 Msa0170580:three_prime_UTR 50.0%
GTTGCGACGTTACCATGGAA+AGG - chr1_4:54743998-54744017 None:intergenic 50.0%
ATGATTTGAGAGCGAGGTGG+TGG + chr1_4:54744702-54744721 Msa0170580:three_prime_UTR 50.0%
! CGAGGTGGTGGTATGATTTG+AGG + chr1_4:54744714-54744733 Msa0170580:three_prime_UTR 50.0%
TGAGGTGAGGATGGCAATGA+CGG + chr1_4:54744732-54744751 Msa0170580:three_prime_UTR 50.0%
!! AGCCATGATAGTGGTGAGGT+GGG + chr1_4:54744770-54744789 Msa0170580:three_prime_UTR 50.0%
ATAGGAGAAGAAGGTGGCAG+AGG + chr1_4:54744822-54744841 Msa0170580:three_prime_UTR 50.0%
TAGGAGAAGAAGGTGGCAGA+GGG + chr1_4:54744823-54744842 Msa0170580:three_prime_UTR 50.0%
TGAACTATGGCAGGATTCGG+TGG + chr1_4:54745369-54745388 Msa0170580:three_prime_UTR 50.0%
!! ATGGCAGGATTCGGTGGTTA+CGG + chr1_4:54745375-54745394 Msa0170580:three_prime_UTR 50.0%
GAGAACCACATCCTTGAAGC+TGG + chr1_4:54745565-54745584 Msa0170580:three_prime_UTR 50.0%
GCAGTCTTCAACCAGCTTCA+AGG - chr1_4:54745579-54745598 None:intergenic 50.0%
GAAGATGCCATGAGAGGGGA+GGG - chr1_4:54743603-54743622 None:intergenic 55.0%
AGATCTCGACAGAGGAGGCA+AGG - chr1_4:54743640-54743659 None:intergenic 55.0%
TGCCTCCTCTGTCGAGATCT+TGG + chr1_4:54743640-54743659 Msa0170580:CDS 55.0%
GACCAAGATCTCGACAGAGG+AGG - chr1_4:54743645-54743664 None:intergenic 55.0%
GAAGGGTTGCGACGTTACCA+TGG - chr1_4:54744003-54744022 None:intergenic 55.0%
GATGGCAATGACGGTGTCTG+AGG + chr1_4:54744741-54744760 Msa0170580:three_prime_UTR 55.0%
GCAATGACGGTGTCTGAGGA+CGG + chr1_4:54744745-54744764 Msa0170580:three_prime_UTR 55.0%
CAATGACGGTGTCTGAGGAC+GGG + chr1_4:54744746-54744765 Msa0170580:three_prime_UTR 55.0%
!! CAGCCATGATAGTGGTGAGG+TGG + chr1_4:54744769-54744788 Msa0170580:three_prime_UTR 55.0%
CTCCCACCTCACCACTATCA+TGG - chr1_4:54744775-54744794 None:intergenic 55.0%
!! GGTGGCTTTGACAAGGTCAG+CGG + chr1_4:54745438-54745457 Msa0170580:three_prime_UTR 55.0%
GGAAGATGCCATGAGAGGGG+AGG - chr1_4:54743604-54743623 None:intergenic 60.0%
AGGACGGGCAGCCATGATAG+TGG + chr1_4:54744761-54744780 Msa0170580:three_prime_UTR 60.0%
!! GGGCAGCCATGATAGTGGTG+AGG + chr1_4:54744766-54744785 Msa0170580:three_prime_UTR 60.0%
GGTGAGGTGGGAGAGAGCAA+CGG + chr1_4:54744782-54744801 Msa0170580:three_prime_UTR 60.0%
TGGGAGAGAGCAACGGAGGT+TGG + chr1_4:54744789-54744808 Msa0170580:three_prime_UTR 60.0%
GAGAGCAACGGAGGTTGGAG+AGG + chr1_4:54744794-54744813 Msa0170580:three_prime_UTR 60.0%
GAGAAGAAGGTGGCAGAGGG+AGG + chr1_4:54744826-54744845 Msa0170580:three_prime_UTR 60.0%
!! GCAGGATTCGGTGGTTACGG+AGG + chr1_4:54745378-54745397 Msa0170580:three_prime_UTR 60.0%
!! GGATTCGGTGGTTACGGAGG+TGG + chr1_4:54745381-54745400 Msa0170580:three_prime_UTR 60.0%
GGTGGTTACGGAGGTGGTGA+CGG + chr1_4:54745387-54745406 Msa0170580:three_prime_UTR 60.0%
! GGCTTTGACAAGGTCAGCGG+TGG + chr1_4:54745441-54745460 Msa0170580:three_prime_UTR 60.0%
TGACAAGGTCAGCGGTGGAG+TGG + chr1_4:54745446-54745465 Msa0170580:three_prime_UTR 60.0%
TGAGAGGGGAGGGAGAGCAG+AGG - chr1_4:54743593-54743612 None:intergenic 65.0%
CTGCTCTCCCTCCCCTCTCA+TGG + chr1_4:54743593-54743612 Msa0170580:CDS 65.0%
GAGGTGGGAGAGAGCAACGG+AGG + chr1_4:54744785-54744804 Msa0170580:three_prime_UTR 65.0%
!! GGTGGTGACGGTGCCAGAAG+AGG + chr1_4:54745399-54745418 Msa0170580:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 54743522 54746033 54743522 ID=Msa0170580;Name=Msa0170580
chr1_4 mRNA 54743522 54746033 54743522 ID=Msa0170580-mRNA-1;Parent=Msa0170580;Name=Msa0170580-mRNA-1;_AED=0.14;_eAED=0.14;_QI=34|1|1|1|0|0|4|1186|101
chr1_4 exon 54743522 54744004 54743522 ID=Msa0170580-mRNA-1:exon:16359;Parent=Msa0170580-mRNA-1
chr1_4 exon 54744398 54744451 54744398 ID=Msa0170580-mRNA-1:exon:16360;Parent=Msa0170580-mRNA-1
chr1_4 exon 54744569 54744847 54744569 ID=Msa0170580-mRNA-1:exon:16361;Parent=Msa0170580-mRNA-1
chr1_4 exon 54745324 54746033 54745324 ID=Msa0170580-mRNA-1:exon:16362;Parent=Msa0170580-mRNA-1
chr1_4 five_prime_UTR 54743522 54743555 54743522 ID=Msa0170580-mRNA-1:five_prime_utr;Parent=Msa0170580-mRNA-1
chr1_4 CDS 54743556 54743861 54743556 ID=Msa0170580-mRNA-1:cds;Parent=Msa0170580-mRNA-1
chr1_4 three_prime_UTR 54743862 54744004 54743862 ID=Msa0170580-mRNA-1:three_prime_utr;Parent=Msa0170580-mRNA-1
chr1_4 three_prime_UTR 54744398 54744451 54744398 ID=Msa0170580-mRNA-1:three_prime_utr;Parent=Msa0170580-mRNA-1
chr1_4 three_prime_UTR 54744569 54744847 54744569 ID=Msa0170580-mRNA-1:three_prime_utr;Parent=Msa0170580-mRNA-1
chr1_4 three_prime_UTR 54745324 54746033 54745324 ID=Msa0170580-mRNA-1:three_prime_utr;Parent=Msa0170580-mRNA-1
Gene Sequence

>Msa0170580

ATGAGAGACCCATTGTTATCGTTTTCATCTCAATCCTCTGCTCTCCCTCCCCTCTCATGGCATCTTCCTTTCTCTGCTCTACCTTGCCTCCTCTGTCGAGATCTTGGTCAATCACCTCTTTTCTCTTTTCTCTTATTCTCTCCAAATTCATTCAATCTTCATGTGGATTCTCACTCCGACAACTTCAACCTTAAACATCTGCTTGAGTCGTCACTGTGCTTTTCTTCCTTCCTTCTAACACCGTCCGTTCACTCAAATCATCCTCCGCATCTAAACCTGACATCGATGTTGCTGTTCAAGTGCTAA

Protein sequence

>Msa0170580

MRDPLLSFSSQSSALPPLSWHLPFSALPCLLCRDLGQSPLFSFLLFSPNSFNLHVDSHSDNFNLKHLLESSLCFSSFLLTPSVHSNHPPHLNLTSMLLFKC*