Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000910 | XP_003620792.1 | 90.230 | 174 | 4 | 4 | 1 | 174 | 1 | 161 | 8.44e-102 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000910 | sp|P82412|RRP3_SPIOL | 88.421 | 95 | 11 | 0 | 80 | 174 | 85 | 179 | 1.84e-58 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000910 | B7FMM7 | 90.230 | 174 | 4 | 4 | 1 | 174 | 1 | 161 | 4.03e-102 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060350 | Msa1000910 | 0.806342 | 8.618028e-50 | -8.615850e-47 |
| Msa0730180 | Msa1000910 | 0.808029 | 3.785863e-50 | -8.615850e-47 |
| Msa0770430 | Msa1000910 | 0.802245 | 6.146983e-49 | -8.615850e-47 |
| Msa0143970 | Msa1000910 | 0.812790 | 3.551034e-51 | -8.615850e-47 |
| Msa0165910 | Msa1000910 | 0.821188 | 4.611831e-53 | -8.615850e-47 |
| Msa0170580 | Msa1000910 | 0.806514 | 7.928762e-50 | -8.615850e-47 |
| Msa0208630 | Msa1000910 | 0.835140 | 1.995571e-56 | -8.615850e-47 |
| Msa0380310 | Msa1000910 | 0.817953 | 2.524072e-52 | -8.615850e-47 |
| Msa0480150 | Msa1000910 | 0.802031 | 6.803289e-49 | -8.615850e-47 |
| Msa1000910 | Msa1044340 | 0.803255 | 3.803269e-49 | -8.615850e-47 |
| Msa1000910 | Msa1129720 | 0.809874 | 1.525289e-50 | -8.615850e-47 |
| Msa1000910 | Msa1234960 | 0.820263 | 7.524306e-53 | -8.615850e-47 |
| Msa1000910 | Msa1237030 | 0.807749 | 4.342757e-50 | -8.615850e-47 |
| Msa1000910 | Msa1271600 | 0.804556 | 2.041285e-49 | -8.615850e-47 |
| Msa1000910 | Msa1280120 | 0.803651 | 3.149117e-49 | -8.615850e-47 |
| Msa1000910 | Msa1280130 | 0.809922 | 1.489345e-50 | -8.615850e-47 |
| Msa1000910 | Msa1310110 | 0.800597 | 1.337615e-48 | -8.615850e-47 |
| Msa1000910 | Msa1376640 | 0.805852 | 1.092657e-49 | -8.615850e-47 |
| Msa1000910 | Msa1385620 | 0.802253 | 6.125583e-49 | -8.615850e-47 |
| Msa1000910 | Msa1456650 | 0.810644 | 1.040409e-50 | -8.615850e-47 |
| Msa0248560 | Msa1000910 | 0.800087 | 1.699161e-48 | -8.615850e-47 |
| Msa0265820 | Msa1000910 | 0.804687 | 1.916702e-49 | -8.615850e-47 |
| Msa0280210 | Msa1000910 | 0.857571 | 1.490668e-62 | -8.615850e-47 |
| Msa0890250 | Msa1000910 | 0.831207 | 1.902470e-55 | -8.615850e-47 |
| Msa0910400 | Msa1000910 | 0.803799 | 2.934300e-49 | -8.615850e-47 |
| Msa0925160 | Msa1000910 | 0.803876 | 2.828404e-49 | -8.615850e-47 |
| Msa0946650 | Msa1000910 | 0.803707 | 3.066284e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000910 | MtrunA17_Chr6g0487251 | 90.230 | 174 | 4 | 4 | 1 | 174 | 1 | 161 | 7.77e-106 | 300 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000910 | AT1G68590.1 | 55.172 | 174 | 65 | 2 | 1 | 174 | 5 | 165 | 6.76e-56 | 174 |
| Msa1000910 | AT1G68590.2 | 83.146 | 89 | 15 | 0 | 86 | 174 | 74 | 162 | 6.87e-55 | 171 |
| Msa1000910 | AT5G15760.1 | 72.727 | 99 | 27 | 0 | 75 | 173 | 85 | 183 | 3.84e-51 | 162 |
Find 53 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAACATATAATAGAGATTT+TGG | 0.124382 | 6_4:-84272967 | None:intergenic |
| CTCTAAGCCCTTATTACTTT+TGG | 0.215786 | 6_4:+84272510 | Msa1000910:CDS |
| TTCCTTGGCCAAAAGTAATA+AGG | 0.216981 | 6_4:-84272518 | None:intergenic |
| GATTAAATAGCACATGAATA+TGG | 0.257966 | 6_4:-84272945 | None:intergenic |
| AGAACAACAATAACATTAAA+AGG | 0.273512 | 6_4:-84272731 | None:intergenic |
| ATTATTCATCTAAAAGAATA+TGG | 0.342628 | 6_4:-84272798 | None:intergenic |
| TCCTTGGCCAAAAGTAATAA+GGG | 0.369106 | 6_4:-84272517 | None:intergenic |
| TTATCCTACATTTGAACCTT+AGG | 0.386153 | 6_4:-84272672 | None:intergenic |
| GACTTGTGTTGAAGTTCATT+TGG | 0.387551 | 6_4:+84272429 | Msa1000910:CDS |
| CAAAAGTAATAAGGGCTTAG+AGG | 0.406041 | 6_4:-84272509 | None:intergenic |
| ATGGAAAAGAACATTGGTAT+TGG | 0.418344 | 6_4:+84272452 | Msa1000910:CDS |
| TCTTCCCAAGCATCTTTCCT+TGG | 0.419427 | 6_4:-84272533 | None:intergenic |
| CCACTGATATTATCAATTTG+TGG | 0.436998 | 6_4:+84272624 | Msa1000910:CDS |
| ATGAACTTCAACACAAGTCT+TGG | 0.442603 | 6_4:-84272425 | None:intergenic |
| TCAACCTCCACCTCAATCTC+AGG | 0.453824 | 6_4:+84271495 | Msa1000910:CDS |
| TGAGGTGGAGGTTGAAGGGA+AGG | 0.460271 | 6_4:-84271487 | None:intergenic |
| GAGATTGAGGTGGAGGTTGA+AGG | 0.469622 | 6_4:-84271492 | None:intergenic |
| ATTAAATAGCACATGAATAT+GGG | 0.474715 | 6_4:-84272944 | None:intergenic |
| TTGGCCAAGGAAAGATGCTT+GGG | 0.477445 | 6_4:+84272529 | Msa1000910:CDS |
| ACAAGTCTTGGTTTGTCAGT+TGG | 0.483207 | 6_4:-84272413 | None:intergenic |
| TTTGGCCAAGGAAAGATGCT+TGG | 0.483605 | 6_4:+84272528 | Msa1000910:CDS |
| TGGAGGTTGAAGGGAAGGAG+AGG | 0.495769 | 6_4:-84271482 | None:intergenic |
| TGTGTTGAAGTTCATTTGGA+TGG | 0.501955 | 6_4:+84272433 | Msa1000910:CDS |
| TCCTACATTTGAACCTTAGG+AGG | 0.511230 | 6_4:-84272669 | None:intergenic |
| GGCGGTAACTTGTCCTCCTA+AGG | 0.512787 | 6_4:+84272656 | Msa1000910:CDS |
| AGAACCTGAGATTGAGGTGG+AGG | 0.518714 | 6_4:-84271499 | None:intergenic |
| AGTTGCTAGAGAGTAAGCCT+TGG | 0.524129 | 6_4:+84272564 | Msa1000910:CDS |
| TTTGATGGGTCGAATTGAAA+AGG | 0.525559 | 6_4:-84271365 | None:intergenic |
| AGAGGAATGGTTCCATGGCC+AGG | 0.528465 | 6_4:-84272491 | None:intergenic |
| ATTTGGATGGAAAAGAACAT+TGG | 0.539555 | 6_4:+84272446 | Msa1000910:CDS |
| GTAATAAGGGCTTAGAGGAA+TGG | 0.544994 | 6_4:-84272504 | None:intergenic |
| GTGTTATCGTGTTCTAGATA+AGG | 0.545660 | 6_4:-84271199 | None:intergenic |
| ACTGTTTATAACATAATGAC+AGG | 0.550009 | 6_4:+84273048 | Msa1000910:three_prime_UTR |
| AGATGCTTGGGAAGAGCTCA+AGG | 0.550724 | 6_4:+84272541 | Msa1000910:CDS |
| AGATTGAGGTGGAGGTTGAA+GGG | 0.554821 | 6_4:-84271491 | None:intergenic |
| TCCTCCTAAGGTTCAAATGT+AGG | 0.555199 | 6_4:+84272668 | Msa1000910:exon |
| ATTGAAAAGGTTGTTGCAAG+AGG | 0.556192 | 6_4:-84271352 | None:intergenic |
| AGAGAAAGAACCTGAGATTG+AGG | 0.562998 | 6_4:-84271505 | None:intergenic |
| TGCAAGAGGCTTTGAAGTGG+TGG | 0.565495 | 6_4:-84271338 | None:intergenic |
| GTTGCTGTGCTGTAGAAGCT+AGG | 0.574501 | 6_4:+84272377 | Msa1000910:intron |
| GGCTTAGAGGAATGGTTCCA+TGG | 0.575688 | 6_4:-84272496 | None:intergenic |
| GATCAAATGATACCTGGCCA+TGG | 0.607979 | 6_4:+84272479 | Msa1000910:CDS |
| GGACTTGATCAAATGATACC+TGG | 0.609762 | 6_4:+84272473 | Msa1000910:CDS |
| CCACAAATTGATAATATCAG+TGG | 0.611414 | 6_4:-84272624 | None:intergenic |
| GAAAGAACCTGAGATTGAGG+TGG | 0.619461 | 6_4:-84271502 | None:intergenic |
| GCAAGAGGCTTTGAAGTGGT+GGG | 0.619866 | 6_4:-84271337 | None:intergenic |
| TCTAGAACACGATAACACTC+TGG | 0.627864 | 6_4:+84271204 | Msa1000910:five_prime_UTR |
| AAATAGCACATGAATATGGG+AGG | 0.646118 | 6_4:-84272941 | None:intergenic |
| ATCAATTTGTGGCAGCAGAG+CGG | 0.648603 | 6_4:+84272635 | Msa1000910:CDS |
| AATTTGTGGCAGCAGAGCGG+CGG | 0.660943 | 6_4:+84272638 | Msa1000910:CDS |
| TGTTGCAAGAGGCTTTGAAG+TGG | 0.666194 | 6_4:-84271341 | None:intergenic |
| CAACAGCAGAAACAGTAAAG+CGG | 0.683497 | 6_4:-84271429 | None:intergenic |
| TGTGCTGTAGAAGCTAGGAG+TGG | 0.708272 | 6_4:+84272382 | Msa1000910:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGGTAAAATTATTTATGTT+TGG | + | chr6_4:84271762-84271781 | Msa1000910:intron | 15.0% |
| !!! | CAAAATCAATTTTATGTTTA+AGG | + | chr6_4:84272168-84272187 | Msa1000910:intron | 15.0% |
| !! | ATTATTCATCTAAAAGAATA+TGG | - | chr6_4:84272801-84272820 | None:intergenic | 15.0% |
| !! | AAGGTAAAATTATTTATGTT+TGG | + | chr6_4:84271762-84271781 | Msa1000910:intron | 15.0% |
| !!! | CAAAATCAATTTTATGTTTA+AGG | + | chr6_4:84272168-84272187 | Msa1000910:intron | 15.0% |
| !! | ATTATTCATCTAAAAGAATA+TGG | - | chr6_4:84272801-84272820 | None:intergenic | 15.0% |
| !!! | TAATTCTAAGTTTGTTTCAA+AGG | + | chr6_4:84271539-84271558 | Msa1000910:intron | 20.0% |
| !! | ATTTCAATGAAAATGCTTAA+AGG | + | chr6_4:84271583-84271602 | Msa1000910:intron | 20.0% |
| !! | TTTCAATGAAAATGCTTAAA+GGG | + | chr6_4:84271584-84271603 | Msa1000910:intron | 20.0% |
| !!! | ATGAAATTTTAGTGTATGTT+TGG | + | chr6_4:84271678-84271697 | Msa1000910:intron | 20.0% |
| !!! | TATGATTAAAATTGAGTTGA+AGG | + | chr6_4:84271743-84271762 | Msa1000910:intron | 20.0% |
| !! | GGATATATTTATGTAAAAGT+AGG | + | chr6_4:84271783-84271802 | Msa1000910:intron | 20.0% |
| !! | TAAAGAACTTATATTATGCT+TGG | - | chr6_4:84272319-84272338 | None:intergenic | 20.0% |
| !! | AGAACAACAATAACATTAAA+AGG | - | chr6_4:84272734-84272753 | None:intergenic | 20.0% |
| !! | ATTAAATAGCACATGAATAT+GGG | - | chr6_4:84272947-84272966 | None:intergenic | 20.0% |
| !!! | CTAACATATAATAGAGATTT+TGG | - | chr6_4:84272970-84272989 | None:intergenic | 20.0% |
| !!! | TAATTCTAAGTTTGTTTCAA+AGG | + | chr6_4:84271539-84271558 | Msa1000910:intron | 20.0% |
| !! | ATTTCAATGAAAATGCTTAA+AGG | + | chr6_4:84271583-84271602 | Msa1000910:intron | 20.0% |
| !! | TTTCAATGAAAATGCTTAAA+GGG | + | chr6_4:84271584-84271603 | Msa1000910:intron | 20.0% |
| !!! | ATGAAATTTTAGTGTATGTT+TGG | + | chr6_4:84271678-84271697 | Msa1000910:intron | 20.0% |
| !!! | TATGATTAAAATTGAGTTGA+AGG | + | chr6_4:84271743-84271762 | Msa1000910:intron | 20.0% |
| !! | GGATATATTTATGTAAAAGT+AGG | + | chr6_4:84271783-84271802 | Msa1000910:intron | 20.0% |
| !! | TAAAGAACTTATATTATGCT+TGG | - | chr6_4:84272319-84272338 | None:intergenic | 20.0% |
| !! | AGAACAACAATAACATTAAA+AGG | - | chr6_4:84272734-84272753 | None:intergenic | 20.0% |
| !! | ATTAAATAGCACATGAATAT+GGG | - | chr6_4:84272947-84272966 | None:intergenic | 20.0% |
| !!! | CTAACATATAATAGAGATTT+TGG | - | chr6_4:84272970-84272989 | None:intergenic | 20.0% |
| ! | TTCAATGAAAATGCTTAAAG+GGG | + | chr6_4:84271585-84271604 | Msa1000910:intron | 25.0% |
| !!! | TTAGTGTATGTTTGGTTTTA+TGG | + | chr6_4:84271686-84271705 | Msa1000910:intron | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | - | chr6_4:84271897-84271916 | None:intergenic | 25.0% |
| ! | CAATATCATAAGTGTAATTC+TGG | - | chr6_4:84271959-84271978 | None:intergenic | 25.0% |
| ! | GAATGTAAAAATCATGTTTG+TGG | + | chr6_4:84272039-84272058 | Msa1000910:intron | 25.0% |
| !!! | CACTTTTTTAATTGTTACGA+TGG | + | chr6_4:84272355-84272374 | Msa1000910:intron | 25.0% |
| ! | GATTAAATAGCACATGAATA+TGG | - | chr6_4:84272948-84272967 | None:intergenic | 25.0% |
| ! | ACTGTTTATAACATAATGAC+AGG | + | chr6_4:84273048-84273067 | Msa1000910:three_prime_UTR | 25.0% |
| ! | TTCAATGAAAATGCTTAAAG+GGG | + | chr6_4:84271585-84271604 | Msa1000910:intron | 25.0% |
| !!! | TTAGTGTATGTTTGGTTTTA+TGG | + | chr6_4:84271686-84271705 | Msa1000910:intron | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | - | chr6_4:84271897-84271916 | None:intergenic | 25.0% |
| ! | CAATATCATAAGTGTAATTC+TGG | - | chr6_4:84271959-84271978 | None:intergenic | 25.0% |
| ! | GAATGTAAAAATCATGTTTG+TGG | + | chr6_4:84272039-84272058 | Msa1000910:intron | 25.0% |
| !!! | CACTTTTTTAATTGTTACGA+TGG | + | chr6_4:84272355-84272374 | Msa1000910:intron | 25.0% |
| ! | GATTAAATAGCACATGAATA+TGG | - | chr6_4:84272948-84272967 | None:intergenic | 25.0% |
| ! | ACTGTTTATAACATAATGAC+AGG | + | chr6_4:84273048-84273067 | Msa1000910:three_prime_UTR | 25.0% |
| !!! | TGTACGTTGTTTGTTTTGAT+GGG | - | chr6_4:84271382-84271401 | None:intergenic | 30.0% |
| !!! | ATGTACGTTGTTTGTTTTGA+TGG | - | chr6_4:84271383-84271402 | None:intergenic | 30.0% |
| TTTCAGTGCGAATGTTTAAA+AGG | + | chr6_4:84271651-84271670 | Msa1000910:intron | 30.0% | |
| TTCAGTGCGAATGTTTAAAA+GGG | + | chr6_4:84271652-84271671 | Msa1000910:intron | 30.0% | |
| ATTGTAACTAACTTGAAGCT+AGG | - | chr6_4:84272080-84272099 | None:intergenic | 30.0% | |
| CAAGTTAGTTACAATTCTAG+AGG | + | chr6_4:84272085-84272104 | Msa1000910:intron | 30.0% | |
| AATATCAACATGCGTCAAAA+TGG | - | chr6_4:84272281-84272300 | None:intergenic | 30.0% | |
| ATTTGGATGGAAAAGAACAT+TGG | + | chr6_4:84272446-84272465 | Msa1000910:CDS | 30.0% | |
| ATGGAAAAGAACATTGGTAT+TGG | + | chr6_4:84272452-84272471 | Msa1000910:CDS | 30.0% | |
| !! | ATTTGCTTTTGTGATATCCA+AGG | - | chr6_4:84272584-84272603 | None:intergenic | 30.0% |
| ! | CCACAAATTGATAATATCAG+TGG | - | chr6_4:84272627-84272646 | None:intergenic | 30.0% |
| CCACTGATATTATCAATTTG+TGG | + | chr6_4:84272624-84272643 | Msa1000910:CDS | 30.0% | |
| TTATCCTACATTTGAACCTT+AGG | - | chr6_4:84272675-84272694 | None:intergenic | 30.0% | |
| !!! | TGTACGTTGTTTGTTTTGAT+GGG | - | chr6_4:84271382-84271401 | None:intergenic | 30.0% |
| !!! | ATGTACGTTGTTTGTTTTGA+TGG | - | chr6_4:84271383-84271402 | None:intergenic | 30.0% |
| TTTCAGTGCGAATGTTTAAA+AGG | + | chr6_4:84271651-84271670 | Msa1000910:intron | 30.0% | |
| TTCAGTGCGAATGTTTAAAA+GGG | + | chr6_4:84271652-84271671 | Msa1000910:intron | 30.0% | |
| ATTGTAACTAACTTGAAGCT+AGG | - | chr6_4:84272080-84272099 | None:intergenic | 30.0% | |
| CAAGTTAGTTACAATTCTAG+AGG | + | chr6_4:84272085-84272104 | Msa1000910:intron | 30.0% | |
| AATATCAACATGCGTCAAAA+TGG | - | chr6_4:84272281-84272300 | None:intergenic | 30.0% | |
| ATTTGGATGGAAAAGAACAT+TGG | + | chr6_4:84272446-84272465 | Msa1000910:CDS | 30.0% | |
| ATGGAAAAGAACATTGGTAT+TGG | + | chr6_4:84272452-84272471 | Msa1000910:CDS | 30.0% | |
| !! | ATTTGCTTTTGTGATATCCA+AGG | - | chr6_4:84272584-84272603 | None:intergenic | 30.0% |
| ! | CCACAAATTGATAATATCAG+TGG | - | chr6_4:84272627-84272646 | None:intergenic | 30.0% |
| CCACTGATATTATCAATTTG+TGG | + | chr6_4:84272624-84272643 | Msa1000910:CDS | 30.0% | |
| TTATCCTACATTTGAACCTT+AGG | - | chr6_4:84272675-84272694 | None:intergenic | 30.0% | |
| ! | GTGTTATCGTGTTCTAGATA+AGG | - | chr6_4:84271202-84271221 | None:intergenic | 35.0% |
| ATTGAAAAGGTTGTTGCAAG+AGG | - | chr6_4:84271355-84271374 | None:intergenic | 35.0% | |
| ! | TTTGATGGGTCGAATTGAAA+AGG | - | chr6_4:84271368-84271387 | None:intergenic | 35.0% |
| TCAGTGCGAATGTTTAAAAG+GGG | + | chr6_4:84271653-84271672 | Msa1000910:intron | 35.0% | |
| AGTAGAATCAATTCTACCAG+AGG | + | chr6_4:84271869-84271888 | Msa1000910:intron | 35.0% | |
| ! | TACACCTGCAGAATCAATTT+TGG | + | chr6_4:84271916-84271935 | Msa1000910:intron | 35.0% |
| ATGAACTTCAACACAAGTCT+TGG | - | chr6_4:84272428-84272447 | None:intergenic | 35.0% | |
| GACTTGTGTTGAAGTTCATT+TGG | + | chr6_4:84272429-84272448 | Msa1000910:CDS | 35.0% | |
| TGTGTTGAAGTTCATTTGGA+TGG | + | chr6_4:84272433-84272452 | Msa1000910:CDS | 35.0% | |
| CAAAAGTAATAAGGGCTTAG+AGG | - | chr6_4:84272512-84272531 | None:intergenic | 35.0% | |
| ! | CTCTAAGCCCTTATTACTTT+TGG | + | chr6_4:84272510-84272529 | Msa1000910:CDS | 35.0% |
| TCCTTGGCCAAAAGTAATAA+GGG | - | chr6_4:84272520-84272539 | None:intergenic | 35.0% | |
| TTCCTTGGCCAAAAGTAATA+AGG | - | chr6_4:84272521-84272540 | None:intergenic | 35.0% | |
| ! | ACGATGTTTTCTGTGTCAAT+AGG | + | chr6_4:84272701-84272720 | Msa1000910:three_prime_UTR | 35.0% |
| AAATAGCACATGAATATGGG+AGG | - | chr6_4:84272944-84272963 | None:intergenic | 35.0% | |
| ! | GTGTTATCGTGTTCTAGATA+AGG | - | chr6_4:84271202-84271221 | None:intergenic | 35.0% |
| ATTGAAAAGGTTGTTGCAAG+AGG | - | chr6_4:84271355-84271374 | None:intergenic | 35.0% | |
| ! | TTTGATGGGTCGAATTGAAA+AGG | - | chr6_4:84271368-84271387 | None:intergenic | 35.0% |
| TCAGTGCGAATGTTTAAAAG+GGG | + | chr6_4:84271653-84271672 | Msa1000910:intron | 35.0% | |
| AGTAGAATCAATTCTACCAG+AGG | + | chr6_4:84271869-84271888 | Msa1000910:intron | 35.0% | |
| ! | TACACCTGCAGAATCAATTT+TGG | + | chr6_4:84271916-84271935 | Msa1000910:intron | 35.0% |
| ATGAACTTCAACACAAGTCT+TGG | - | chr6_4:84272428-84272447 | None:intergenic | 35.0% | |
| GACTTGTGTTGAAGTTCATT+TGG | + | chr6_4:84272429-84272448 | Msa1000910:CDS | 35.0% | |
| TGTGTTGAAGTTCATTTGGA+TGG | + | chr6_4:84272433-84272452 | Msa1000910:CDS | 35.0% | |
| CAAAAGTAATAAGGGCTTAG+AGG | - | chr6_4:84272512-84272531 | None:intergenic | 35.0% | |
| ! | CTCTAAGCCCTTATTACTTT+TGG | + | chr6_4:84272510-84272529 | Msa1000910:CDS | 35.0% |
| TCCTTGGCCAAAAGTAATAA+GGG | - | chr6_4:84272520-84272539 | None:intergenic | 35.0% | |
| TTCCTTGGCCAAAAGTAATA+AGG | - | chr6_4:84272521-84272540 | None:intergenic | 35.0% | |
| ! | ACGATGTTTTCTGTGTCAAT+AGG | + | chr6_4:84272701-84272720 | Msa1000910:three_prime_UTR | 35.0% |
| AAATAGCACATGAATATGGG+AGG | - | chr6_4:84272944-84272963 | None:intergenic | 35.0% | |
| ! | TCTAGAACACGATAACACTC+TGG | + | chr6_4:84271204-84271223 | Msa1000910:five_prime_UTR | 40.0% |
| CAACAGCAGAAACAGTAAAG+CGG | - | chr6_4:84271432-84271451 | None:intergenic | 40.0% | |
| AGAGAAAGAACCTGAGATTG+AGG | - | chr6_4:84271508-84271527 | None:intergenic | 40.0% | |
| GAAATTGTAGCTTCTCGTTC+TGG | - | chr6_4:84271841-84271860 | None:intergenic | 40.0% | |
| ! | TTTGACATGTTTGGTTCCTC+TGG | - | chr6_4:84271888-84271907 | None:intergenic | 40.0% |
| !!! | AATTTTGGCTCCTCCAAAAG+CGG | + | chr6_4:84271931-84271950 | Msa1000910:intron | 40.0% |
| !!! | TGTAATTCTGGTTCCGCTTT+TGG | - | chr6_4:84271947-84271966 | None:intergenic | 40.0% |
| ! | ATCATTTTCGACTCTCCCTA+CGG | + | chr6_4:84272192-84272211 | Msa1000910:intron | 40.0% |
| !!! | GTGTGTTTGGTTTTACCGTA+GGG | - | chr6_4:84272210-84272229 | None:intergenic | 40.0% |
| !!! | TGTGTGTTTGGTTTTACCGT+AGG | - | chr6_4:84272211-84272230 | None:intergenic | 40.0% |
| TAGCTTCTGCATCCAAATAC+AGG | - | chr6_4:84272245-84272264 | None:intergenic | 40.0% | |
| !! | ACAAGTCTTGGTTTGTCAGT+TGG | - | chr6_4:84272416-84272435 | None:intergenic | 40.0% |
| GGACTTGATCAAATGATACC+TGG | + | chr6_4:84272473-84272492 | Msa1000910:CDS | 40.0% | |
| GTAATAAGGGCTTAGAGGAA+TGG | - | chr6_4:84272507-84272526 | None:intergenic | 40.0% | |
| TCCTCCTAAGGTTCAAATGT+AGG | + | chr6_4:84272668-84272687 | Msa1000910:exon | 40.0% | |
| TCCTACATTTGAACCTTAGG+AGG | - | chr6_4:84272672-84272691 | None:intergenic | 40.0% | |
| ! | TCTAGAACACGATAACACTC+TGG | + | chr6_4:84271204-84271223 | Msa1000910:five_prime_UTR | 40.0% |
| CAACAGCAGAAACAGTAAAG+CGG | - | chr6_4:84271432-84271451 | None:intergenic | 40.0% | |
| AGAGAAAGAACCTGAGATTG+AGG | - | chr6_4:84271508-84271527 | None:intergenic | 40.0% | |
| GAAATTGTAGCTTCTCGTTC+TGG | - | chr6_4:84271841-84271860 | None:intergenic | 40.0% | |
| ! | TTTGACATGTTTGGTTCCTC+TGG | - | chr6_4:84271888-84271907 | None:intergenic | 40.0% |
| !!! | AATTTTGGCTCCTCCAAAAG+CGG | + | chr6_4:84271931-84271950 | Msa1000910:intron | 40.0% |
| !!! | TGTAATTCTGGTTCCGCTTT+TGG | - | chr6_4:84271947-84271966 | None:intergenic | 40.0% |
| ! | ATCATTTTCGACTCTCCCTA+CGG | + | chr6_4:84272192-84272211 | Msa1000910:intron | 40.0% |
| !!! | GTGTGTTTGGTTTTACCGTA+GGG | - | chr6_4:84272210-84272229 | None:intergenic | 40.0% |
| !!! | TGTGTGTTTGGTTTTACCGT+AGG | - | chr6_4:84272211-84272230 | None:intergenic | 40.0% |
| TAGCTTCTGCATCCAAATAC+AGG | - | chr6_4:84272245-84272264 | None:intergenic | 40.0% | |
| !! | ACAAGTCTTGGTTTGTCAGT+TGG | - | chr6_4:84272416-84272435 | None:intergenic | 40.0% |
| GGACTTGATCAAATGATACC+TGG | + | chr6_4:84272473-84272492 | Msa1000910:CDS | 40.0% | |
| GTAATAAGGGCTTAGAGGAA+TGG | - | chr6_4:84272507-84272526 | None:intergenic | 40.0% | |
| TCCTCCTAAGGTTCAAATGT+AGG | + | chr6_4:84272668-84272687 | Msa1000910:exon | 40.0% | |
| TCCTACATTTGAACCTTAGG+AGG | - | chr6_4:84272672-84272691 | None:intergenic | 40.0% | |
| !! | TGTTGCAAGAGGCTTTGAAG+TGG | - | chr6_4:84271344-84271363 | None:intergenic | 45.0% |
| AGATTGAGGTGGAGGTTGAA+GGG | - | chr6_4:84271494-84271513 | None:intergenic | 45.0% | |
| GAAAGAACCTGAGATTGAGG+TGG | - | chr6_4:84271505-84271524 | None:intergenic | 45.0% | |
| ! | GGAGCCAAAATTGATTCTGC+AGG | - | chr6_4:84271923-84271942 | None:intergenic | 45.0% |
| !!! | AATTCTGGTTCCGCTTTTGG+AGG | - | chr6_4:84271944-84271963 | None:intergenic | 45.0% |
| CATAGGCTTCGTGTGTCTAT+TGG | - | chr6_4:84272122-84272141 | None:intergenic | 45.0% | |
| AGACACACGAAGCCTATGTT+TGG | + | chr6_4:84272124-84272143 | Msa1000910:intron | 45.0% | |
| GAGCTTCTGCATCCAAACAT+AGG | - | chr6_4:84272139-84272158 | None:intergenic | 45.0% | |
| ACACACACGAAGCCTGTATT+TGG | + | chr6_4:84272230-84272249 | Msa1000910:intron | 45.0% | |
| TGCGTCAAAATGGAAGCTTG+TGG | - | chr6_4:84272271-84272290 | None:intergenic | 45.0% | |
| GATCAAATGATACCTGGCCA+TGG | + | chr6_4:84272479-84272498 | Msa1000910:CDS | 45.0% | |
| !! | GCCCTTATTACTTTTGGCCA+AGG | + | chr6_4:84272516-84272535 | Msa1000910:CDS | 45.0% |
| TTTGGCCAAGGAAAGATGCT+TGG | + | chr6_4:84272528-84272547 | Msa1000910:CDS | 45.0% | |
| TTGGCCAAGGAAAGATGCTT+GGG | + | chr6_4:84272529-84272548 | Msa1000910:CDS | 45.0% | |
| TCTTCCCAAGCATCTTTCCT+TGG | - | chr6_4:84272536-84272555 | None:intergenic | 45.0% | |
| AGTTGCTAGAGAGTAAGCCT+TGG | + | chr6_4:84272564-84272583 | Msa1000910:CDS | 45.0% | |
| ATCAATTTGTGGCAGCAGAG+CGG | + | chr6_4:84272635-84272654 | Msa1000910:CDS | 45.0% | |
| !! | TGTTGCAAGAGGCTTTGAAG+TGG | - | chr6_4:84271344-84271363 | None:intergenic | 45.0% |
| AGATTGAGGTGGAGGTTGAA+GGG | - | chr6_4:84271494-84271513 | None:intergenic | 45.0% | |
| GAAAGAACCTGAGATTGAGG+TGG | - | chr6_4:84271505-84271524 | None:intergenic | 45.0% | |
| ! | GGAGCCAAAATTGATTCTGC+AGG | - | chr6_4:84271923-84271942 | None:intergenic | 45.0% |
| !!! | AATTCTGGTTCCGCTTTTGG+AGG | - | chr6_4:84271944-84271963 | None:intergenic | 45.0% |
| CATAGGCTTCGTGTGTCTAT+TGG | - | chr6_4:84272122-84272141 | None:intergenic | 45.0% | |
| AGACACACGAAGCCTATGTT+TGG | + | chr6_4:84272124-84272143 | Msa1000910:intron | 45.0% | |
| GAGCTTCTGCATCCAAACAT+AGG | - | chr6_4:84272139-84272158 | None:intergenic | 45.0% | |
| ACACACACGAAGCCTGTATT+TGG | + | chr6_4:84272230-84272249 | Msa1000910:intron | 45.0% | |
| TGCGTCAAAATGGAAGCTTG+TGG | - | chr6_4:84272271-84272290 | None:intergenic | 45.0% | |
| GATCAAATGATACCTGGCCA+TGG | + | chr6_4:84272479-84272498 | Msa1000910:CDS | 45.0% | |
| !! | GCCCTTATTACTTTTGGCCA+AGG | + | chr6_4:84272516-84272535 | Msa1000910:CDS | 45.0% |
| TTTGGCCAAGGAAAGATGCT+TGG | + | chr6_4:84272528-84272547 | Msa1000910:CDS | 45.0% | |
| TTGGCCAAGGAAAGATGCTT+GGG | + | chr6_4:84272529-84272548 | Msa1000910:CDS | 45.0% | |
| TCTTCCCAAGCATCTTTCCT+TGG | - | chr6_4:84272536-84272555 | None:intergenic | 45.0% | |
| AGTTGCTAGAGAGTAAGCCT+TGG | + | chr6_4:84272564-84272583 | Msa1000910:CDS | 45.0% | |
| ATCAATTTGTGGCAGCAGAG+CGG | + | chr6_4:84272635-84272654 | Msa1000910:CDS | 45.0% | |
| !! | GCAAGAGGCTTTGAAGTGGT+GGG | - | chr6_4:84271340-84271359 | None:intergenic | 50.0% |
| !! | TGCAAGAGGCTTTGAAGTGG+TGG | - | chr6_4:84271341-84271360 | None:intergenic | 50.0% |
| GAGATTGAGGTGGAGGTTGA+AGG | - | chr6_4:84271495-84271514 | None:intergenic | 50.0% | |
| TCAACCTCCACCTCAATCTC+AGG | + | chr6_4:84271495-84271514 | Msa1000910:CDS | 50.0% | |
| AGAACCTGAGATTGAGGTGG+AGG | - | chr6_4:84271502-84271521 | None:intergenic | 50.0% | |
| GCTTCGTGTGTGTGTGTGTT+TGG | - | chr6_4:84272223-84272242 | None:intergenic | 50.0% | |
| GTTGCTGTGCTGTAGAAGCT+AGG | + | chr6_4:84272377-84272396 | Msa1000910:intron | 50.0% | |
| TGTGCTGTAGAAGCTAGGAG+TGG | + | chr6_4:84272382-84272401 | Msa1000910:intron | 50.0% | |
| GGCTTAGAGGAATGGTTCCA+TGG | - | chr6_4:84272499-84272518 | None:intergenic | 50.0% | |
| AGATGCTTGGGAAGAGCTCA+AGG | + | chr6_4:84272541-84272560 | Msa1000910:CDS | 50.0% | |
| !! | GCAAGAGGCTTTGAAGTGGT+GGG | - | chr6_4:84271340-84271359 | None:intergenic | 50.0% |
| !! | TGCAAGAGGCTTTGAAGTGG+TGG | - | chr6_4:84271341-84271360 | None:intergenic | 50.0% |
| GAGATTGAGGTGGAGGTTGA+AGG | - | chr6_4:84271495-84271514 | None:intergenic | 50.0% | |
| TCAACCTCCACCTCAATCTC+AGG | + | chr6_4:84271495-84271514 | Msa1000910:CDS | 50.0% | |
| AGAACCTGAGATTGAGGTGG+AGG | - | chr6_4:84271502-84271521 | None:intergenic | 50.0% | |
| GCTTCGTGTGTGTGTGTGTT+TGG | - | chr6_4:84272223-84272242 | None:intergenic | 50.0% | |
| GTTGCTGTGCTGTAGAAGCT+AGG | + | chr6_4:84272377-84272396 | Msa1000910:intron | 50.0% | |
| TGTGCTGTAGAAGCTAGGAG+TGG | + | chr6_4:84272382-84272401 | Msa1000910:intron | 50.0% | |
| GGCTTAGAGGAATGGTTCCA+TGG | - | chr6_4:84272499-84272518 | None:intergenic | 50.0% | |
| AGATGCTTGGGAAGAGCTCA+AGG | + | chr6_4:84272541-84272560 | Msa1000910:CDS | 50.0% | |
| TGGAGGTTGAAGGGAAGGAG+AGG | - | chr6_4:84271485-84271504 | None:intergenic | 55.0% | |
| TGAGGTGGAGGTTGAAGGGA+AGG | - | chr6_4:84271490-84271509 | None:intergenic | 55.0% | |
| AGAGGAATGGTTCCATGGCC+AGG | - | chr6_4:84272494-84272513 | None:intergenic | 55.0% | |
| AATTTGTGGCAGCAGAGCGG+CGG | + | chr6_4:84272638-84272657 | Msa1000910:CDS | 55.0% | |
| ! | GGCGGTAACTTGTCCTCCTA+AGG | + | chr6_4:84272656-84272675 | Msa1000910:CDS | 55.0% |
| TGGAGGTTGAAGGGAAGGAG+AGG | - | chr6_4:84271485-84271504 | None:intergenic | 55.0% | |
| TGAGGTGGAGGTTGAAGGGA+AGG | - | chr6_4:84271490-84271509 | None:intergenic | 55.0% | |
| AGAGGAATGGTTCCATGGCC+AGG | - | chr6_4:84272494-84272513 | None:intergenic | 55.0% | |
| AATTTGTGGCAGCAGAGCGG+CGG | + | chr6_4:84272638-84272657 | Msa1000910:CDS | 55.0% | |
| ! | GGCGGTAACTTGTCCTCCTA+AGG | + | chr6_4:84272656-84272675 | Msa1000910:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 84271168 | 84273074 | 84271168 | ID=Msa1000910;Name=Msa1000910 |
| chr6_4 | mRNA | 84271168 | 84273074 | 84271168 | ID=Msa1000910-mRNA-1;Parent=Msa1000910;Name=Msa1000910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=109|1|1|1|1|1|2|398|174 |
| chr6_4 | exon | 84271168 | 84271516 | 84271168 | ID=Msa1000910-mRNA-1:exon:16357;Parent=Msa1000910-mRNA-1 |
| chr6_4 | exon | 84272392 | 84273074 | 84272392 | ID=Msa1000910-mRNA-1:exon:16358;Parent=Msa1000910-mRNA-1 |
| chr6_4 | five_prime_UTR | 84271168 | 84271276 | 84271168 | ID=Msa1000910-mRNA-1:five_prime_utr;Parent=Msa1000910-mRNA-1 |
| chr6_4 | CDS | 84271277 | 84271516 | 84271277 | ID=Msa1000910-mRNA-1:cds;Parent=Msa1000910-mRNA-1 |
| chr6_4 | CDS | 84272392 | 84272676 | 84272392 | ID=Msa1000910-mRNA-1:cds;Parent=Msa1000910-mRNA-1 |
| chr6_4 | three_prime_UTR | 84272677 | 84273074 | 84272677 | ID=Msa1000910-mRNA-1:three_prime_utr;Parent=Msa1000910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
