AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0091480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091480 MtrunA17_Chr1g0212371 89.181 342 21 3 1 332 1 336 0.0 558
Msa0091480 MtrunA17_Chr8g0378941 38.798 183 96 5 132 311 172 341 1.54e-33 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091480 AT2G31840.1 71.489 235 64 2 93 324 109 343 8.17e-113 331
Msa0091480 AT2G31840.2 71.489 235 64 2 93 324 109 343 8.17e-113 331
Msa0091480 AT4G28590.1 39.665 179 90 7 139 313 158 322 7.86e-35 130

Find 99 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAATCTTCATTTACAAAT+TGG 0.236557 1_2:-73603143 Msa0091480:three_prime_UTR
TTTCTCAAACCCCACTTTAC+AGG 0.236764 1_2:-73606605 Msa0091480:CDS
GCAGCGTTCATGTCTTTAAT+AGG 0.273706 1_2:+73606127 None:intergenic
TCAGCATCTTGAGGCCAATT+AGG 0.323877 1_2:+73606289 None:intergenic
GCCTCAAGATGCTGATGGTT+GGG 0.347115 1_2:-73606281 Msa0091480:CDS
GAAGTTATCTTTACTAAAGC+AGG 0.362361 1_2:-73603665 Msa0091480:CDS
TGATTGAACTCTTGTTAGTT+TGG 0.367683 1_2:+73606573 None:intergenic
TTGTCCACAATCGTTATAGA+AGG 0.369198 1_2:-73606057 Msa0091480:intron
TCACTCAAATCTGATGGTTC+TGG 0.371232 1_2:-73606553 Msa0091480:CDS
GACTAACATTCCAGATTTCC+AGG 0.377669 1_2:-73603438 Msa0091480:CDS
ATCATATTGTATGCAGTCAA+TGG 0.378354 1_2:+73603272 None:intergenic
CACAATGACAAAATGCTAGA+TGG 0.382096 1_2:+73603325 None:intergenic
GCTTTAGTAAAGATAACTTC+TGG 0.387977 1_2:+73603668 None:intergenic
ATGGAAATACTTCAGCGATA+TGG 0.392411 1_2:+73603344 None:intergenic
GTTGTAAAGAGAAAATGAAT+TGG 0.401953 1_2:+73606651 None:intergenic
TCACCTTAGGCTTGGCTTGG+TGG 0.403474 1_2:-73603192 Msa0091480:three_prime_UTR
TTGTAAAGAGAAAATGAATT+GGG 0.405487 1_2:+73606652 None:intergenic
CACCTTAGGCTTGGCTTGGT+GGG 0.414387 1_2:-73603191 Msa0091480:three_prime_UTR
TTTACAACAAACTCTTCAAC+CGG 0.424293 1_2:-73606636 Msa0091480:CDS
ATTAAAGATAGCAATATTCA+AGG 0.430847 1_2:+73602902 None:intergenic
GTTAGTCAAACACGATGGTT+TGG 0.445608 1_2:+73603454 None:intergenic
TGGAAGAGGAGGATCCTAAT+TGG 0.447524 1_2:-73606303 Msa0091480:CDS
AGACATGAACGCTGCTGAAT+GGG 0.448503 1_2:-73606119 Msa0091480:CDS
CTTTAGTAAAGATAACTTCT+GGG 0.455068 1_2:+73603669 None:intergenic
TCAGAACACTGGATTGTCAA+TGG 0.456395 1_2:+73603397 None:intergenic
GGCTACCTAGTGTTCTCTGC+TGG 0.458280 1_2:+73606739 None:intergenic
AGAAGGCTGTGCATATCATA+TGG 0.459941 1_2:-73603887 Msa0091480:CDS
TCTTCAAGAGACATAACATA+AGG 0.460526 1_2:+73606451 None:intergenic
TGGACTCACTTAAGATTAGC+AGG 0.463057 1_2:-73603057 Msa0091480:three_prime_UTR
TAAAGTGGGGTTTGAGAAAA+GGG 0.468151 1_2:+73606609 None:intergenic
CCATCACCTTAGGCTTGGCT+TGG 0.469449 1_2:-73603195 Msa0091480:three_prime_UTR
GTAAAGTGGGGTTTGAGAAA+AGG 0.470216 1_2:+73606608 None:intergenic
CCTCAAGATGCTGATGGTTG+GGG 0.471802 1_2:-73606280 Msa0091480:CDS
GGTTTGAGAAAAGGGTCTTC+CGG 0.471829 1_2:+73606617 None:intergenic
CTGCAAGAAATTCATGCAAT+GGG 0.479855 1_2:-73603242 Msa0091480:three_prime_UTR
GTCATTGTGTAAAATATGCA+AGG 0.481297 1_2:-73603311 Msa0091480:three_prime_UTR
TAGGTAGCCTCCTCCGACCA+TGG 0.496248 1_2:-73606725 Msa0091480:exon
AAGACATGAACGCTGCTGAA+TGG 0.499426 1_2:-73606120 Msa0091480:CDS
ATTGTGGACAAGAATAATCA+AGG 0.499873 1_2:+73606069 None:intergenic
GGTTGATGGTGATAACTGTC+AGG 0.504727 1_2:-73602987 Msa0091480:three_prime_UTR
TTACCAACTTGTTGTGGAAG+AGG 0.507121 1_2:-73606317 Msa0091480:CDS
GATGGTTGGGGATTCAGCCT+TGG 0.507224 1_2:-73606268 Msa0091480:CDS
AGAAACCAGCAGAGAACACT+AGG 0.509036 1_2:-73606744 Msa0091480:five_prime_UTR
CTTCAAGAGACATAACATAA+GGG 0.510035 1_2:+73606452 None:intergenic
GGAAGCCATCACCTTAGGCT+TGG 0.510056 1_2:-73603200 Msa0091480:three_prime_UTR
AAGGCTCTATCTGAGGTTGA+TGG 0.511695 1_2:-73603001 Msa0091480:three_prime_UTR
AGTTGCTGCACTTAAAGTAT+CGG 0.515906 1_2:-73603696 Msa0091480:CDS
TTATCATCTTGCCACACTAT+CGG 0.517607 1_2:+73606160 None:intergenic
TCTACAACTTCTTGAACTTG+AGG 0.519587 1_2:+73606382 None:intergenic
TAATGATTACCAACTTGTTG+TGG 0.520440 1_2:-73606323 Msa0091480:CDS
ACTGCAAGAAATTCATGCAA+TGG 0.520767 1_2:-73603243 Msa0091480:three_prime_UTR
GAATCACTAACCTGTAAAGT+GGG 0.521576 1_2:+73606595 None:intergenic
ATCATCAACATCATCGTCCT+CGG 0.534011 1_2:+73606189 None:intergenic
GCCTAAGGTGATGGCTTCCA+CGG 0.534560 1_2:+73603204 None:intergenic
AACACGATGGTTTGGCTCCA+CGG 0.534700 1_2:+73603462 None:intergenic
GGAATCACTAACCTGTAAAG+TGG 0.538509 1_2:+73606594 None:intergenic
ACCGTGGAAGCCATCACCTT+AGG 0.543507 1_2:-73603205 Msa0091480:three_prime_UTR
GGCCTCAAGATGCTGATGGT+TGG 0.550479 1_2:-73606282 Msa0091480:CDS
CAAACCTTCTATAACGATTG+TGG 0.550589 1_2:+73606053 None:intergenic
TTTATTACTTACTCTTGGTG+AGG 0.554532 1_2:+73603851 None:intergenic
AACCCACCAAGCCAAGCCTA+AGG 0.559832 1_2:+73603189 None:intergenic
TTGAGTGCCATGGTCGGAGG+AGG 0.560396 1_2:+73606718 None:intergenic
TCAAATCTGATGGTTCTGGT+TGG 0.565426 1_2:-73606549 Msa0091480:CDS
TTATTACTTACTCTTGGTGA+GGG 0.566848 1_2:+73603852 None:intergenic
GTTCAATCACTCAAATCTGA+TGG 0.569587 1_2:-73606559 Msa0091480:CDS
CCTCCTCTTCCACAACAAGT+TGG 0.573358 1_2:+73606314 None:intergenic
CCAAGCCAAGCCTAAGGTGA+TGG 0.576268 1_2:+73603195 None:intergenic
GGTTCTGGTTGGAAGAAAAG+AGG 0.577172 1_2:-73606538 Msa0091480:CDS
GGATTGTCAATGGTAAAAGA+AGG 0.585441 1_2:+73603407 None:intergenic
GTAATCTGTGTGCATCAAGA+AGG 0.587847 1_2:-73603020 Msa0091480:three_prime_UTR
GGCAAATTGAGTGCCATGGT+CGG 0.590720 1_2:+73606712 None:intergenic
CCAACTTGTTGTGGAAGAGG+AGG 0.593627 1_2:-73606314 Msa0091480:CDS
AATTCGAGAAGAACTAGAGA+AGG 0.595768 1_2:-73603904 Msa0091480:CDS
AAGTTATCTTTACTAAAGCA+GGG 0.597570 1_2:-73603664 Msa0091480:CDS
CATGAACGCTGCTGAATGGG+AGG 0.602021 1_2:-73606116 Msa0091480:CDS
AATTGGCCTCAAGATGCTGA+TGG 0.603896 1_2:-73606286 Msa0091480:CDS
TCATTGTGTAAAATATGCAA+GGG 0.606476 1_2:-73603310 Msa0091480:three_prime_UTR
CTCTTGAAGAGAGACAAGAA+TGG 0.610559 1_2:-73606438 Msa0091480:CDS
ATATGTTTCATTGATGACAG+TGG 0.611526 1_2:+73606691 None:intergenic
GACTCACTTAAGATTAGCAG+GGG 0.614621 1_2:-73603055 Msa0091480:three_prime_UTR
GGAAGATAATGATGATGCCG+AGG 0.624630 1_2:-73606206 Msa0091480:CDS
AGTACATATACTATTTGCAG+TGG 0.627400 1_2:-73603077 Msa0091480:three_prime_UTR
AAATTGAGTGCCATGGTCGG+AGG 0.630316 1_2:+73606715 None:intergenic
GGACTCACTTAAGATTAGCA+GGG 0.632089 1_2:-73603056 Msa0091480:three_prime_UTR
CCCCAACCATCAGCATCTTG+AGG 0.632853 1_2:+73606280 None:intergenic
TTGTGGACAAGAATAATCAA+GGG 0.634415 1_2:+73606070 None:intergenic
CATCAAGAAGGCTCTATCTG+AGG 0.636786 1_2:-73603008 Msa0091480:three_prime_UTR
GGCTGTTTGATGTGTGACCG+TGG 0.652769 1_2:-73603221 Msa0091480:three_prime_UTR
ACAGATCAATACCTTTATCA+CGG 0.653404 1_2:+73603630 None:intergenic
CAATTCGCAGTGCAGATGAG+TGG 0.653894 1_2:-73603511 Msa0091480:CDS
GTTGATGGTGATAACTGTCA+GGG 0.660773 1_2:-73602986 Msa0091480:three_prime_UTR
CAGTGGCAAATTGAGTGCCA+TGG 0.668004 1_2:+73606708 None:intergenic
AATCACTAACCTGTAAAGTG+GGG 0.668201 1_2:+73606596 None:intergenic
TGATAGCGACGACGATGACG+AGG 0.679731 1_2:-73606491 Msa0091480:CDS
ATGATGATAAGCCGATAGTG+TGG 0.713878 1_2:-73606171 Msa0091480:CDS
GTACTTTCTAAATATGCACA+AGG 0.714903 1_2:+73603095 None:intergenic
TTGATGGTGATAACTGTCAG+GGG 0.718489 1_2:-73602985 Msa0091480:three_prime_UTR
GGAATGTTAGTCAAACACGA+TGG 0.721819 1_2:+73603449 None:intergenic
TCAAGAAGTTGTAGACACCG+AGG 0.738091 1_2:-73606374 Msa0091480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCATTATAATATGTAAT+AGG + chr1_2:73605853-73605872 None:intergenic 10.0%
!!! AGATAAAAAAACAATAGTTT+TGG + chr1_2:73603630-73603649 None:intergenic 15.0%
!!! TAAGAAAAGATTCTTTTTTT+AGG - chr1_2:73604852-73604871 Msa0091480:intron 15.0%
!!! TAAGAAAAGATTCTTTTTTT+AGG - chr1_2:73604852-73604871 Msa0091480:intron 15.0%
!!! AATGTTTTTATTTATCTTAC+TGG - chr1_2:73606733-73606752 Msa0091480:five_prime_UTR 15.0%
!! TTGTAAAGAGAAAATGAATT+GGG + chr1_2:73602960-73602979 None:intergenic 20.0%
!! TACAATACAAAACAAAAAGA+AGG - chr1_2:73603382-73603401 Msa0091480:exon 20.0%
!!! TAAGAAAAGATTCTTTTTCT+AGG + chr1_2:73605033-73605052 None:intergenic 20.0%
!!! TCTTTTCTTATATATGAAAC+CGG - chr1_2:73605043-73605062 Msa0091480:intron 20.0%
!! TGTGATATAAGAAGAAAAAA+AGG + chr1_2:73605145-73605164 None:intergenic 20.0%
!! AACTAAACTAAATCAAGAAA+AGG + chr1_2:73605177-73605196 None:intergenic 20.0%
!! TAGAATACAATGCATATATA+TGG - chr1_2:73605284-73605303 Msa0091480:intron 20.0%
!!! TCATTGTATCTTTTTTGAAA+TGG - chr1_2:73605491-73605510 Msa0091480:intron 20.0%
!!! CATTGTATCTTTTTTGAAAT+GGG - chr1_2:73605492-73605511 Msa0091480:intron 20.0%
!!! ACATTTTCACTTTTATTCTT+AGG - chr1_2:73605665-73605684 Msa0091480:intron 20.0%
!!! CTTTTACTGAATTTTGTATT+TGG + chr1_2:73606007-73606026 None:intergenic 20.0%
!! ATGAATCTTCATTTACAAAT+TGG - chr1_2:73606466-73606485 Msa0091480:CDS 20.0%
!! ATTAAAGATAGCAATATTCA+AGG + chr1_2:73606710-73606729 None:intergenic 20.0%
! GTTGTAAAGAGAAAATGAAT+TGG + chr1_2:73602961-73602980 None:intergenic 25.0%
!!! TTATCTTGTTTTAGTTGAAG+TGG - chr1_2:73603654-73603673 Msa0091480:CDS 25.0%
!! CATTAATTGATAATCGACTA+AGG + chr1_2:73603693-73603712 None:intergenic 25.0%
! CTTAGTCGATTATCAATTAA+TGG - chr1_2:73603691-73603710 Msa0091480:CDS 25.0%
! AGTTATTGCAGAGTATATTT+AGG - chr1_2:73604073-73604092 Msa0091480:intron 25.0%
!! TTATCTACCTCTATTTTACT+AGG - chr1_2:73604628-73604647 Msa0091480:intron 25.0%
!! CTAAGCTAAAAATATGGTTT+TGG + chr1_2:73604743-73604762 None:intergenic 25.0%
! AACAAGCTAAGCTAAAAATA+TGG + chr1_2:73604749-73604768 None:intergenic 25.0%
!! TCTTTTCTTATATATGAGAC+CGG + chr1_2:73604842-73604861 None:intergenic 25.0%
!! TCTTTTCTTATATATGAGAC+CGG + chr1_2:73604842-73604861 None:intergenic 25.0%
! CATTGAATAATTAATGTACC+TGG + chr1_2:73605008-73605027 None:intergenic 25.0%
!! ATGTATGATACGATTTTCAA+TGG - chr1_2:73605073-73605092 Msa0091480:intron 25.0%
!! TCTAACTTCAAAAGCATATT+AGG + chr1_2:73605595-73605614 None:intergenic 25.0%
! TAAAAGTGAAAATGTTAGAC+AGG + chr1_2:73605660-73605679 None:intergenic 25.0%
! ATGACTTTATTACTTACTCT+TGG + chr1_2:73605766-73605785 None:intergenic 25.0%
!! TATAATGATATGAAAGTGTG+TGG - chr1_2:73605862-73605881 Msa0091480:intron 25.0%
! CTTTAGTAAAGATAACTTCT+GGG + chr1_2:73605943-73605962 None:intergenic 25.0%
! AAGTTATCTTTACTAAAGCA+GGG - chr1_2:73605945-73605964 Msa0091480:intron 25.0%
!! AAGATTTTATACCGTGATAA+AGG - chr1_2:73605968-73605987 Msa0091480:intron 25.0%
! TCATTGTGTAAAATATGCAA+GGG - chr1_2:73606299-73606318 Msa0091480:CDS 25.0%
! ACTGGAAAACAAAGAAAAAT+TGG - chr1_2:73606751-73606770 Msa0091480:five_prime_UTR 25.0%
! ATATGTTTCATTGATGACAG+TGG + chr1_2:73602921-73602940 None:intergenic 30.0%
TTTACAACAAACTCTTCAAC+CGG - chr1_2:73602973-73602992 Msa0091480:three_prime_UTR 30.0%
TGATTGAACTCTTGTTAGTT+TGG + chr1_2:73603039-73603058 None:intergenic 30.0%
!! ACATAAGGGTCATTTTCTTT+CGG + chr1_2:73603146-73603165 None:intergenic 30.0%
CTTCAAGAGACATAACATAA+GGG + chr1_2:73603160-73603179 None:intergenic 30.0%
TCTTCAAGAGACATAACATA+AGG + chr1_2:73603161-73603180 None:intergenic 30.0%
AAGAAAAATCAGACAGGTTA+TGG - chr1_2:73603196-73603215 Msa0091480:three_prime_UTR 30.0%
! CATTTTCTTCTTCTTTTCCT+CGG + chr1_2:73603255-73603274 None:intergenic 30.0%
!! TAATGATTACCAACTTGTTG+TGG - chr1_2:73603286-73603305 Msa0091480:three_prime_UTR 30.0%
TTGTGGACAAGAATAATCAA+GGG + chr1_2:73603542-73603561 None:intergenic 30.0%
ATTGTGGACAAGAATAATCA+AGG + chr1_2:73603543-73603562 None:intergenic 30.0%
! TTATCAATTAATGGCCGTTT+TGG - chr1_2:73603700-73603719 Msa0091480:CDS 30.0%
!! TGACTGAGTTGTTTGTTATT+TGG - chr1_2:73603730-73603749 Msa0091480:CDS 30.0%
TTTCCACCTGTTTATATACA+TGG - chr1_2:73603903-73603922 Msa0091480:CDS 30.0%
TTCCACCTGTTTATATACAT+GGG - chr1_2:73603904-73603923 Msa0091480:CDS 30.0%
!! AATTTTAGCACTCACATAAG+AGG - chr1_2:73604001-73604020 Msa0091480:intron 30.0%
GTACTAGCTGTCATATAATT+AGG - chr1_2:73604033-73604052 Msa0091480:intron 30.0%
! AGCATATACCTTTTCATACA+TGG - chr1_2:73604167-73604186 Msa0091480:intron 30.0%
CTGAAAACCATAGTTCTTTA+AGG + chr1_2:73604234-73604253 None:intergenic 30.0%
TCAAGTCATCAACATAAACT+AGG + chr1_2:73604317-73604336 None:intergenic 30.0%
!!! GGTGTCTTGAAGTATTTTTT+GGG - chr1_2:73604414-73604433 Msa0091480:intron 30.0%
!!! TTAGCTTGTTTTAGTCTAAG+TGG - chr1_2:73604759-73604778 Msa0091480:intron 30.0%
!!! ATTTGTTTTACAAGTAGACC+AGG - chr1_2:73604987-73605006 Msa0091480:intron 30.0%
TTTCTTATATATGAAACCGG+AGG - chr1_2:73605046-73605065 Msa0091480:intron 30.0%
TTCTTATATATGAAACCGGA+GGG - chr1_2:73605047-73605066 Msa0091480:intron 30.0%
! ACGATTTTCAATGGTCATTT+TGG - chr1_2:73605082-73605101 Msa0091480:intron 30.0%
! TTCTGAGAGAATAAGAGATT+TGG - chr1_2:73605255-73605274 Msa0091480:intron 30.0%
ATGGATTTCTATCATGATTC+AGG - chr1_2:73605303-73605322 Msa0091480:intron 30.0%
! AATGTTAGACAGGATTGTTT+TGG + chr1_2:73605650-73605669 None:intergenic 30.0%
!!! CGAATTTTTTCATTGTCCTT+TGG + chr1_2:73605691-73605710 None:intergenic 30.0%
TTATTACTTACTCTTGGTGA+GGG + chr1_2:73605760-73605779 None:intergenic 30.0%
TTTATTACTTACTCTTGGTG+AGG + chr1_2:73605761-73605780 None:intergenic 30.0%
AAGTCATACAATCATTCCTT+TGG - chr1_2:73605779-73605798 Msa0091480:intron 30.0%
GATAAAATAGCTGAAACCAA+AGG + chr1_2:73605798-73605817 None:intergenic 30.0%
!! CAGCTATTTTATCACAAAGT+TGG - chr1_2:73605805-73605824 Msa0091480:intron 30.0%
GCTTTAGTAAAGATAACTTC+TGG + chr1_2:73605944-73605963 None:intergenic 30.0%
GAAGTTATCTTTACTAAAGC+AGG - chr1_2:73605944-73605963 Msa0091480:intron 30.0%
ACAGATCAATACCTTTATCA+CGG + chr1_2:73605982-73606001 None:intergenic 30.0%
GATGGAGACGAATAAATAAA+TGG + chr1_2:73606043-73606062 None:intergenic 30.0%
! TAAAAGAAGGAATGTTTTCC+TGG + chr1_2:73606192-73606211 None:intergenic 30.0%
!! TCTTCAATTTTTCAGAACAC+TGG + chr1_2:73606226-73606245 None:intergenic 30.0%
GTCATTGTGTAAAATATGCA+AGG - chr1_2:73606298-73606317 Msa0091480:CDS 30.0%
ATCATATTGTATGCAGTCAA+TGG + chr1_2:73606340-73606359 None:intergenic 30.0%
!! TTGGTGGGTTAAAAGAAAAA+TGG - chr1_2:73606433-73606452 Msa0091480:CDS 30.0%
GTACTTTCTAAATATGCACA+AGG + chr1_2:73606517-73606536 None:intergenic 30.0%
AGTACATATACTATTTGCAG+TGG - chr1_2:73606532-73606551 Msa0091480:CDS 30.0%
TAAAGTGGGGTTTGAGAAAA+GGG + chr1_2:73603003-73603022 None:intergenic 35.0%
AATCACTAACCTGTAAAGTG+GGG + chr1_2:73603016-73603035 None:intergenic 35.0%
GAATCACTAACCTGTAAAGT+GGG + chr1_2:73603017-73603036 None:intergenic 35.0%
GTTCAATCACTCAAATCTGA+TGG - chr1_2:73603050-73603069 Msa0091480:three_prime_UTR 35.0%
ATGGAGAAGAAAAATCAGAC+AGG - chr1_2:73603190-73603209 Msa0091480:three_prime_UTR 35.0%
TCTACAACTTCTTGAACTTG+AGG + chr1_2:73603230-73603249 None:intergenic 35.0%
TTATCATCTTGCCACACTAT+CGG + chr1_2:73603452-73603471 None:intergenic 35.0%
TTGTCCACAATCGTTATAGA+AGG - chr1_2:73603552-73603571 Msa0091480:intron 35.0%
CAAACCTTCTATAACGATTG+TGG + chr1_2:73603559-73603578 None:intergenic 35.0%
TTCAGACAGAATTAGAGATC+TGG - chr1_2:73603855-73603874 Msa0091480:intron 35.0%
ATAAACAGGTGGAAATCAAC+AGG + chr1_2:73603898-73603917 None:intergenic 35.0%
AGTCTCCCATGTATATAAAC+AGG + chr1_2:73603912-73603931 None:intergenic 35.0%
TATACATGGGAGACTATTAG+CGG - chr1_2:73603917-73603936 Msa0091480:CDS 35.0%
CACTCACATAAGAGGTAATT+AGG - chr1_2:73604009-73604028 Msa0091480:intron 35.0%
AGAGTATATTTAGGCCTAGA+TGG - chr1_2:73604082-73604101 Msa0091480:intron 35.0%
CTCTGATACCATGTATGAAA+AGG + chr1_2:73604178-73604197 None:intergenic 35.0%
GAACAAGGAGTAGTCAAAAT+AGG + chr1_2:73604261-73604280 None:intergenic 35.0%
CTTGCAATATCACACAATTG+TGG - chr1_2:73604290-73604309 Msa0091480:intron 35.0%
GAAATGATCCAGTAGCTATA+TGG - chr1_2:73604346-73604365 Msa0091480:intron 35.0%
TTCACTTTCCATATAGCTAC+TGG + chr1_2:73604357-73604376 None:intergenic 35.0%
! GAACACACGTTTTCATAAGA+AGG - chr1_2:73604386-73604405 Msa0091480:intron 35.0%
! ACGTTTTCATAAGAAGGACT+TGG - chr1_2:73604392-73604411 Msa0091480:intron 35.0%
! CGTTTTCATAAGAAGGACTT+GGG - chr1_2:73604393-73604412 Msa0091480:intron 35.0%
!!! GGGTGTCTTGAAGTATTTTT+TGG - chr1_2:73604413-73604432 Msa0091480:intron 35.0%
AAAGATACCAATAGCATTCC+TGG + chr1_2:73604451-73604470 None:intergenic 35.0%
ATTCTTGAGACTGAGATTCT+AGG - chr1_2:73604501-73604520 Msa0091480:intron 35.0%
AGCTTATGATTCTGCTTCAT+AGG + chr1_2:73604546-73604565 None:intergenic 35.0%
! TAGCTAGCCTAGTAAAATAG+AGG + chr1_2:73604638-73604657 None:intergenic 35.0%
TTCTTATATATGAGACCGGA+GGG + chr1_2:73604838-73604857 None:intergenic 35.0%
TTTCTTATATATGAGACCGG+AGG + chr1_2:73604839-73604858 None:intergenic 35.0%
TTCTTATATATGAGACCGGA+GGG + chr1_2:73604838-73604857 None:intergenic 35.0%
TTTCTTATATATGAGACCGG+AGG + chr1_2:73604839-73604858 None:intergenic 35.0%
GCTACAATTAGCAATCTACT+CGG + chr1_2:73605119-73605138 None:intergenic 35.0%
AGTAGATTGCTAATTGTAGC+TGG - chr1_2:73605119-73605138 Msa0091480:intron 35.0%
CTCACTTTGCACACATAAAA+AGG + chr1_2:73605213-73605232 None:intergenic 35.0%
AAGTAAAATTGAACACCACC+AGG + chr1_2:73605520-73605539 None:intergenic 35.0%
ATCACTACTATAGCCAAATG+CGG + chr1_2:73605566-73605585 None:intergenic 35.0%
GCTTGACTGTAAACATGATA+TGG + chr1_2:73605623-73605642 None:intergenic 35.0%
! CACTTTTATTCTTAGGCCAA+AGG - chr1_2:73605672-73605691 Msa0091480:intron 35.0%
AATTCGAGAAGAACTAGAGA+AGG - chr1_2:73605705-73605724 Msa0091480:intron 35.0%
AGTTGCTGCACTTAAAGTAT+CGG - chr1_2:73605913-73605932 Msa0091480:intron 35.0%
GACCATGACGAATTTCTATT+TGG - chr1_2:73606064-73606083 Msa0091480:CDS 35.0%
CACCAAATAGAAATTCGTCA+TGG + chr1_2:73606069-73606088 None:intergenic 35.0%
CATGACGAATTTCTATTTGG+TGG - chr1_2:73606067-73606086 Msa0091480:CDS 35.0%
AGATGAGTGGTCAAAAATCA+TGG - chr1_2:73606111-73606130 Msa0091480:CDS 35.0%
!!! ATGGCATTTTTTTACTACCG+TGG - chr1_2:73606130-73606149 Msa0091480:CDS 35.0%
GGATTGTCAATGGTAAAAGA+AGG + chr1_2:73606205-73606224 None:intergenic 35.0%
ATGGAAATACTTCAGCGATA+TGG + chr1_2:73606268-73606287 None:intergenic 35.0%
CACAATGACAAAATGCTAGA+TGG + chr1_2:73606287-73606306 None:intergenic 35.0%
ACTGCAAGAAATTCATGCAA+TGG - chr1_2:73606366-73606385 Msa0091480:CDS 35.0%
CTGCAAGAAATTCATGCAAT+GGG - chr1_2:73606367-73606386 Msa0091480:CDS 35.0%
GTAAAGTGGGGTTTGAGAAA+AGG + chr1_2:73603004-73603023 None:intergenic 40.0%
TTTCTCAAACCCCACTTTAC+AGG - chr1_2:73603004-73603023 Msa0091480:three_prime_UTR 40.0%
GGAATCACTAACCTGTAAAG+TGG + chr1_2:73603018-73603037 None:intergenic 40.0%
TCACTCAAATCTGATGGTTC+TGG - chr1_2:73603056-73603075 Msa0091480:three_prime_UTR 40.0%
!! TCAAATCTGATGGTTCTGGT+TGG - chr1_2:73603060-73603079 Msa0091480:three_prime_UTR 40.0%
CTCTTGAAGAGAGACAAGAA+TGG - chr1_2:73603171-73603190 Msa0091480:three_prime_UTR 40.0%
!! TTACCAACTTGTTGTGGAAG+AGG - chr1_2:73603292-73603311 Msa0091480:three_prime_UTR 40.0%
TCTTGTCGAAAAACTGTCCA+AGG + chr1_2:73603361-73603380 None:intergenic 40.0%
ATCATCAACATCATCGTCCT+CGG + chr1_2:73603423-73603442 None:intergenic 40.0%
ATGATGATAAGCCGATAGTG+TGG - chr1_2:73603438-73603457 Msa0091480:CDS 40.0%
GCAGCGTTCATGTCTTTAAT+AGG + chr1_2:73603485-73603504 None:intergenic 40.0%
TGCTTGAGTAAGTAGCTGAA+TGG - chr1_2:73603596-73603615 Msa0091480:intron 40.0%
TCAGTCAGAGTTCTCCAAAA+CGG + chr1_2:73603717-73603736 None:intergenic 40.0%
CTCCCATGTATATAAACAGG+TGG + chr1_2:73603909-73603928 None:intergenic 40.0%
! GAGACTATTAGCGGACAATT+AGG - chr1_2:73603926-73603945 Msa0091480:intron 40.0%
AGCGGACAATTAGGTGTATT+TGG - chr1_2:73603935-73603954 Msa0091480:intron 40.0%
CCTAGATGGAGTGATGTATT+CGG - chr1_2:73604096-73604115 Msa0091480:intron 40.0%
CTAGATGGAGTGATGTATTC+GGG - chr1_2:73604097-73604116 Msa0091480:intron 40.0%
TAGATGGAGTGATGTATTCG+GGG - chr1_2:73604098-73604117 Msa0091480:intron 40.0%
TTTGGAAAACCAACACCTAG+GGG + chr1_2:73604201-73604220 None:intergenic 40.0%
GTTTGGAAAACCAACACCTA+GGG + chr1_2:73604202-73604221 None:intergenic 40.0%
AGTTTGGAAAACCAACACCT+AGG + chr1_2:73604203-73604222 None:intergenic 40.0%
TCTGCTGCCTTAAAGAACTA+TGG - chr1_2:73604224-73604243 Msa0091480:intron 40.0%
TGCAAGTTGCAACATGAACA+AGG + chr1_2:73604276-73604295 None:intergenic 40.0%
!! GTTGATGACTTGATTGTCTC+AGG - chr1_2:73604324-73604343 Msa0091480:intron 40.0%
!!! GTATTTTTTGGGTGTCACAG+TGG - chr1_2:73604425-73604444 Msa0091480:intron 40.0%
ATTGTCAATGTCGTTCAGGT+TGG + chr1_2:73604596-73604615 None:intergenic 40.0%
ACCTGAACGACATTGACAAT+TGG - chr1_2:73604596-73604615 Msa0091480:intron 40.0%
ACCAATTGTCAATGTCGTTC+AGG + chr1_2:73604600-73604619 None:intergenic 40.0%
ATTCATGCAACAACCGACAA+TGG - chr1_2:73604690-73604709 Msa0091480:intron 40.0%
AACCGACAATGGATCATTGA+AGG - chr1_2:73604701-73604720 Msa0091480:intron 40.0%
AGCCTTCAATGATCCATTGT+CGG + chr1_2:73604706-73604725 None:intergenic 40.0%
ATGGATCATTGAAGGCTGAA+TGG - chr1_2:73604709-73604728 Msa0091480:intron 40.0%
CTAAGTGGCTGAATGCTAAT+TGG - chr1_2:73604774-73604793 Msa0091480:intron 40.0%
TTGAAACTATCTACTCCCTC+CGG - chr1_2:73604820-73604839 Msa0091480:intron 40.0%
CATGTATACACACAGGTTCT+TGG + chr1_2:73605331-73605350 None:intergenic 40.0%
AGTCTCTCATGTATACACAC+AGG + chr1_2:73605338-73605357 None:intergenic 40.0%
!!! TCTTTTTTGAAATGGGCTCC+TGG - chr1_2:73605499-73605518 Msa0091480:intron 40.0%
GCGGAAGTTATTTGCACATA+AGG + chr1_2:73605547-73605566 None:intergenic 40.0%
GTGCAAATAACTTCCGCATT+TGG - chr1_2:73605550-73605569 Msa0091480:intron 40.0%
AGAAGGCTGTGCATATCATA+TGG - chr1_2:73605722-73605741 Msa0091480:intron 40.0%
AGAAATTCGTCATGGTCAGA+TGG + chr1_2:73606061-73606080 None:intergenic 40.0%
GTTAGTCAAACACGATGGTT+TGG + chr1_2:73606158-73606177 None:intergenic 40.0%
GGAATGTTAGTCAAACACGA+TGG + chr1_2:73606163-73606182 None:intergenic 40.0%
GACTAACATTCCAGATTTCC+AGG - chr1_2:73606171-73606190 Msa0091480:CDS 40.0%
! GGAATGTTTTCCTGGAAATC+TGG + chr1_2:73606184-73606203 None:intergenic 40.0%
TCAGAACACTGGATTGTCAA+TGG + chr1_2:73606215-73606234 None:intergenic 40.0%
TGGACTCACTTAAGATTAGC+AGG - chr1_2:73606552-73606571 Msa0091480:CDS 40.0%
GGACTCACTTAAGATTAGCA+GGG - chr1_2:73606553-73606572 Msa0091480:CDS 40.0%
GACTCACTTAAGATTAGCAG+GGG - chr1_2:73606554-73606573 Msa0091480:CDS 40.0%
GTAATCTGTGTGCATCAAGA+AGG - chr1_2:73606589-73606608 Msa0091480:CDS 40.0%
!! GTTGATGGTGATAACTGTCA+GGG - chr1_2:73606623-73606642 Msa0091480:CDS 40.0%
!! TTGATGGTGATAACTGTCAG+GGG - chr1_2:73606624-73606643 Msa0091480:CDS 40.0%
AGAAACCAGCAGAGAACACT+AGG - chr1_2:73602865-73602884 Msa0091480:three_prime_UTR 45.0%
GGTTTGAGAAAAGGGTCTTC+CGG + chr1_2:73602995-73603014 None:intergenic 45.0%
! GGTTCTGGTTGGAAGAAAAG+AGG - chr1_2:73603071-73603090 Msa0091480:three_prime_UTR 45.0%
TCAAGAAGTTGTAGACACCG+AGG - chr1_2:73603235-73603254 Msa0091480:three_prime_UTR 45.0%
TGGAAGAGGAGGATCCTAAT+TGG - chr1_2:73603306-73603325 Msa0091480:three_prime_UTR 45.0%
TCAGCATCTTGAGGCCAATT+AGG + chr1_2:73603323-73603342 None:intergenic 45.0%
! AATTGGCCTCAAGATGCTGA+TGG - chr1_2:73603323-73603342 Msa0091480:three_prime_UTR 45.0%
! GGAAGATAATGATGATGCCG+AGG - chr1_2:73603403-73603422 Msa0091480:CDS 45.0%
AAGACATGAACGCTGCTGAA+TGG - chr1_2:73603489-73603508 Msa0091480:CDS 45.0%
AGACATGAACGCTGCTGAAT+GGG - chr1_2:73603490-73603509 Msa0091480:CDS 45.0%
!! CACACGCACGAGAAAGTATT+CGG + chr1_2:73603803-73603822 None:intergenic 45.0%
CCGAATACATCACTCCATCT+AGG + chr1_2:73604099-73604118 None:intergenic 45.0%
!! CTTTAAGGCAGCAGAGAGTT+TGG + chr1_2:73604219-73604238 None:intergenic 45.0%
! ATGACGTCGAGAGCACATTT+GGG + chr1_2:73604483-73604502 None:intergenic 45.0%
! AATGACGTCGAGAGCACATT+TGG + chr1_2:73604484-73604503 None:intergenic 45.0%
CATAGGCACACTAACAGGTT+AGG + chr1_2:73604529-73604548 None:intergenic 45.0%
TGCTTCATAGGCACACTAAC+AGG + chr1_2:73604534-73604553 None:intergenic 45.0%
TCATAAGCTTGCATTAGCCC+AGG - chr1_2:73604557-73604576 Msa0091480:intron 45.0%
CATAAGCTTGCATTAGCCCA+GGG - chr1_2:73604558-73604577 Msa0091480:intron 45.0%
TTGGTCAAGAAAAGGACCCT+GGG + chr1_2:73604577-73604596 None:intergenic 45.0%
!! CGTTCAGGTTGGTCAAGAAA+AGG + chr1_2:73604585-73604604 None:intergenic 45.0%
GGAGGGAGTAGATAGTTTCA+AGG + chr1_2:73604821-73604840 None:intergenic 45.0%
CGTATCATACATACTCCCTC+CGG + chr1_2:73605065-73605084 None:intergenic 45.0%
!!! TTTTTGAAATGGGCTCCTGG+TGG - chr1_2:73605502-73605521 Msa0091480:intron 45.0%
CATCAAGAAGGCTCTATCTG+AGG - chr1_2:73606601-73606620 Msa0091480:CDS 45.0%
! AAGGCTCTATCTGAGGTTGA+TGG - chr1_2:73606608-73606627 Msa0091480:CDS 45.0%
!! GGTTGATGGTGATAACTGTC+AGG - chr1_2:73606622-73606641 Msa0091480:CDS 45.0%
! GGGCATCAGCATTTTGTAGT+AGG - chr1_2:73606644-73606663 Msa0091480:CDS 45.0%
AAATTGAGTGCCATGGTCGG+AGG + chr1_2:73602897-73602916 None:intergenic 50.0%
GGCAAATTGAGTGCCATGGT+CGG + chr1_2:73602900-73602919 None:intergenic 50.0%
CAGTGGCAAATTGAGTGCCA+TGG + chr1_2:73602904-73602923 None:intergenic 50.0%
CCTCCTCTTCCACAACAAGT+TGG + chr1_2:73603298-73603317 None:intergenic 50.0%
!! CCAACTTGTTGTGGAAGAGG+AGG - chr1_2:73603295-73603314 Msa0091480:three_prime_UTR 50.0%
GCCTCAAGATGCTGATGGTT+GGG - chr1_2:73603328-73603347 Msa0091480:three_prime_UTR 50.0%
CCTCAAGATGCTGATGGTTG+GGG - chr1_2:73603329-73603348 Msa0091480:three_prime_UTR 50.0%
TACATGGTATCAGAGCCCCT+AGG - chr1_2:73604183-73604202 Msa0091480:intron 50.0%
ACAGTGGCCAGGAATGCTAT+TGG - chr1_2:73604441-73604460 Msa0091480:intron 50.0%
GTTGGTCAAGAAAAGGACCC+TGG + chr1_2:73604578-73604597 None:intergenic 50.0%
CTGCAGAGTTATACTCCCTC+CGG - chr1_2:73604913-73604932 Msa0091480:intron 50.0%
CAATTCGCAGTGCAGATGAG+TGG - chr1_2:73606098-73606117 Msa0091480:CDS 50.0%
! AACACGATGGTTTGGCTCCA+CGG + chr1_2:73606150-73606169 None:intergenic 50.0%
GGCTACCTAGTGTTCTCTGC+TGG + chr1_2:73602873-73602892 None:intergenic 55.0%
! TGATAGCGACGACGATGACG+AGG - chr1_2:73603118-73603137 Msa0091480:three_prime_UTR 55.0%
GGCCTCAAGATGCTGATGGT+TGG - chr1_2:73603327-73603346 Msa0091480:three_prime_UTR 55.0%
CCCCAACCATCAGCATCTTG+AGG + chr1_2:73603332-73603351 None:intergenic 55.0%
GATGGTTGGGGATTCAGCCT+TGG - chr1_2:73603341-73603360 Msa0091480:three_prime_UTR 55.0%
CATGAACGCTGCTGAATGGG+AGG - chr1_2:73603493-73603512 Msa0091480:CDS 55.0%
!! CGCACGAGAAAGTATTCGGC+AGG + chr1_2:73603799-73603818 None:intergenic 55.0%
GTATCAGAGCCCCTAGGTGT+TGG - chr1_2:73604189-73604208 Msa0091480:intron 55.0%
!! TTTTGGGTGTCACAGTGGCC+AGG - chr1_2:73604430-73604449 Msa0091480:intron 55.0%
! CGTCGAGAGCACATTTGGGT+TGG + chr1_2:73604479-73604498 None:intergenic 55.0%
GGCTGTTTGATGTGTGACCG+TGG - chr1_2:73606388-73606407 Msa0091480:CDS 55.0%
ACCGTGGAAGCCATCACCTT+AGG - chr1_2:73606404-73606423 Msa0091480:CDS 55.0%
! GCCTAAGGTGATGGCTTCCA+CGG + chr1_2:73606408-73606427 None:intergenic 55.0%
GGAAGCCATCACCTTAGGCT+TGG - chr1_2:73606409-73606428 Msa0091480:CDS 55.0%
CCAAGCCAAGCCTAAGGTGA+TGG + chr1_2:73606417-73606436 None:intergenic 55.0%
CCATCACCTTAGGCTTGGCT+TGG - chr1_2:73606414-73606433 Msa0091480:CDS 55.0%
!! TCACCTTAGGCTTGGCTTGG+TGG - chr1_2:73606417-73606436 Msa0091480:CDS 55.0%
!! CACCTTAGGCTTGGCTTGGT+GGG - chr1_2:73606418-73606437 Msa0091480:CDS 55.0%
AACCCACCAAGCCAAGCCTA+AGG + chr1_2:73606423-73606442 None:intergenic 55.0%
TAGGTAGCCTCCTCCGACCA+TGG - chr1_2:73602884-73602903 Msa0091480:three_prime_UTR 60.0%
TTGAGTGCCATGGTCGGAGG+AGG + chr1_2:73602894-73602913 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 73602851 73606780 73602851 ID=Msa0091480;Name=Msa0091480
chr1_2 mRNA 73602851 73606780 73602851 ID=Msa0091480-mRNA-1;Parent=Msa0091480;Name=Msa0091480-mRNA-1;_AED=0.09;_eAED=0.09;_QI=52|1|1|1|1|1|4|546|333
chr1_2 exon 73602851 73603533 73602851 ID=Msa0091480-mRNA-1:exon:25849;Parent=Msa0091480-mRNA-1
chr1_2 exon 73603642 73603753 73603642 ID=Msa0091480-mRNA-1:exon:25848;Parent=Msa0091480-mRNA-1
chr1_2 exon 73603863 73603944 73603863 ID=Msa0091480-mRNA-1:exon:25847;Parent=Msa0091480-mRNA-1
chr1_2 exon 73606058 73606780 73606058 ID=Msa0091480-mRNA-1:exon:25846;Parent=Msa0091480-mRNA-1
chr1_2 five_prime_UTR 73606729 73606780 73606729 ID=Msa0091480-mRNA-1:five_prime_utr;Parent=Msa0091480-mRNA-1
chr1_2 CDS 73606058 73606728 73606058 ID=Msa0091480-mRNA-1:cds;Parent=Msa0091480-mRNA-1
chr1_2 CDS 73603863 73603944 73603863 ID=Msa0091480-mRNA-1:cds;Parent=Msa0091480-mRNA-1
chr1_2 CDS 73603642 73603753 73603642 ID=Msa0091480-mRNA-1:cds;Parent=Msa0091480-mRNA-1
chr1_2 CDS 73603397 73603533 73603397 ID=Msa0091480-mRNA-1:cds;Parent=Msa0091480-mRNA-1
chr1_2 three_prime_UTR 73602851 73603396 73602851 ID=Msa0091480-mRNA-1:three_prime_utr;Parent=Msa0091480-mRNA-1
Gene Sequence

>Msa0091480

ATGGCACTCAATTTGCCACTGTCATCAATGAAACATATAAACTTCAACGAGAAACCCAATTCATTTTCTCTTTACAACAAACTCTTCAACCGGAAGACCCTTTTCTCAAACCCCACTTTACAGGTTAGTGATTCCAAACTAACAAGAGTTCAATCACTCAAATCTGATGGTTCTGGTTGGAAGAAAAGAGGTAAAGAATCATACAGTGACAGTGATGATAGCGACGACGATGACGAGGCACCGAAAGAAAATGACCCTTATGTTATGTCTCTTGAAGAGAGACAAGAATGGAGAAGAAAAATCAGACAGGTTATGGATAAGAAACCTCAAGTTCAAGAAGTTGTAGACACCGAGGAAAAGAAGAAGAAAATGCAAAAGTTAATTAATGATTACCAACTTGTTGTGGAAGAGGAGGATCCTAATTGGCCTCAAGATGCTGATGGTTGGGGATTCAGCCTTGGACAGTTTTTCGACAAGATTACAATACAAAACAAAAAGAAGGAAGATAATGATGATGCCGAGGACGATGATGTTGATGATGATAAGCCGATAGTGTGGCAAGATGATAATTACATTCGTCCTATTAAAGACATGAACGCTGCTGAATGGGAGGAAACTGTGTTCAAAGATATTAGTCCCTTGATTATTCTTGTCCACAATCGTTATAGAAGGCCAAAGGACAATGAAAAAATTCGAGAAGAACTAGAGAAGGCTGTGCATATCATATGGAACTGCAGATTACCCTCACCAAGATGTGTGGCACTTGACGCTGTTGTTGAGACTGAACTAGTTGCTGCACTTAAAGTATCGGTTTTCCCAGAAGTTATCTTTACTAAAGCAGGGAAGATTTTATACCGTGATAAAGCAATTCGCAGTGCAGATGAGTGGTCAAAAATCATGGCATTTTTTTACTACCGTGGAGCCAAACCATCGTGTTTGACTAACATTCCAGATTTCCAGGAAAACATTCCTTCTTTTACCATTGACAATCCAGTGTTCTGA

Protein sequence

>Msa0091480

MALNLPLSSMKHINFNEKPNSFSLYNKLFNRKTLFSNPTLQVSDSKLTRVQSLKSDGSGWKKRGKESYSDSDDSDDDDEAPKENDPYVMSLEERQEWRRKIRQVMDKKPQVQEVVDTEEKKKKMQKLINDYQLVVEEEDPNWPQDADGWGFSLGQFFDKITIQNKKKEDNDDAEDDDVDDDKPIVWQDDNYIRPIKDMNAAEWEETVFKDISPLIILVHNRYRRPKDNEKIREELEKAVHIIWNCRLPSPRCVALDAVVETELVAALKVSVFPEVIFTKAGKILYRDKAIRSADEWSKIMAFFYYRGAKPSCLTNIPDFQENIPSFTIDNPVF*