AlfalfaGEDB | Msa0285030

M. sativa cultivar zhongmu-4 / Msa0285030

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285030	XP_024639500.1	92.063	63	5	0	1	63	1	63	1.48e-32	120

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285030	A0A396HPA8	92.063	63	5	0	1	63	1	63	5.86e-32	118

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0285030	Msa0323870	0.804235	2.381293e-49	-8.615850e-47
Msa0285030	Msa0411160	0.802002	6.899181e-49	-8.615850e-47
Msa0285030	Msa0531890	0.804759	1.851065e-49	-8.615850e-47
Msa0285030	Msa0562590	0.801642	8.176153e-49	-8.615850e-47
Msa0285030	Msa0604210	0.810537	1.097173e-50	-8.615850e-47
Msa0285030	Msa0817220	0.821259	4.441444e-53	-8.615850e-47
Msa0285030	Msa0826100	0.838353	3.025111e-57	-8.615850e-47
Msa0285030	Msa1397610	0.802604	5.184731e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285030	MtrunA17_Chr5g0405131	92.063	63	5	0	1	63	1	63	1.13e-35	118
Msa0285030	MtrunA17_Chr8g0334871	77.612	67	11	1	1	63	111	177	1.29e-30	108
Msa0285030	MtrunA17_Chr7g0232961	71.429	56	16	0	8	63	142	197	2.49e-21	84.3
Msa0285030	MtrunA17_Chr7g0232491	66.071	56	19	0	8	63	114	169	3.57e-19	78.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0285030	AT3G60420.1	57.895	57	24	0	7	63	123	179	3.69e-16	70.5
Msa0285030	AT3G60450.2	55.357	56	25	0	8	63	142	197	7.72e-16	70.1
Msa0285030	AT3G60450.1	55.357	56	25	0	8	63	110	165	7.76e-16	69.7
Msa0285030	AT3G60440.2	53.571	56	26	0	8	63	133	188	4.21e-14	64.7
Msa0285030	AT3G60440.1	53.571	56	26	0	8	63	133	188	8.02e-14	64.3
Msa0285030	AT3G60415.1	43.836	73	32	1	8	71	109	181	3.14e-13	62.4

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Find 49 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGAAAGGAGGAACGC+TGG	0.572269	2_3:+24119329	Msa0285030:five_prime_UTR
AACGAAAGAGAGACGGCGAG+AGG	0.594423	2_3:+24119404	Msa0285030:five_prime_UTR
AAGAGAGACGGCGAGAGGAG+AGG	0.501706	2_3:+24119409	Msa0285030:five_prime_UTR
AATGAAATGAATGAAGACCA+AGG	0.691600	2_3:+24119456	Msa0285030:five_prime_UTR
ACGAGAGAGAAGGAACTCGA+CGG	0.675133	2_3:+24119302	Msa0285030:five_prime_UTR
AGACAATGGATCACATTGTT+GGG	0.461566	2_3:-24119959	None:intergenic
AGAGACGGGAACGAGAGAGA+AGG	0.594857	2_3:+24119292	None:intergenic
AGAGCGGCGGAAACGATTGC+CGG	0.448782	2_3:-24119632	None:intergenic
AGATCGATTGAAGCAATGAA+AGG	0.576201	2_3:+24119860	Msa0285030:five_prime_UTR
AGGAGAGGAAAGTGTTGTGT+TGG	0.553945	2_3:+24119424	Msa0285030:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAATGAATGAAGACCA+AGG	+	chr2_3:24119456-24119475	Msa0285030:five_prime_UTR	30.0%
AAAAGATGAGGAAATTACCT+TGG	-	chr2_3:24119476-24119495	None:intergenic	30.0%
AACATTACCAACCATTAAGT+TGG	+	chr2_3:24120058-24120077	Msa0285030:intron	30.0%
AACATTACCAACTTAATGGT+TGG	-	chr2_3:24120068-24120087	None:intergenic	30.0%
AGTGGATAACAATGTAGAAA+GGG	+	chr2_3:24120238-24120257	Msa0285030:CDS	30.0%
TCATTTAAGTGTTTGTGAGA+TGG	+	chr2_3:24120754-24120773	Msa0285030:intron	30.0%
TAAGTTAACACACTTACTCT+TGG	-	chr2_3:24121358-24121377	None:intergenic	30.0%
GTCAACTGTTTGAATATTTG+GGG	+	chr2_3:24121800-24121819	Msa0285030:intron	30.0%
CCTTTGCTTGTAATATTTAC+CGG	-	chr2_3:24121844-24121863	None:intergenic	30.0%
TTCTGATTCAAAATCCAGAG+CGG	-	chr2_3:24119651-24119670	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	24119297	24121872	24119297	ID=Msa0285030;Name=Msa0285030
chr2_3	mRNA	24119297	24121872	24119297	ID=Msa0285030-mRNA-1;Parent=Msa0285030;Name=Msa0285030-mRNA-1;_AED=0.24;_eAED=0.24;_QI=400\|0.75\|0.8\|0.8\|0.25\|0.4\|5\|0\|75
chr2_3	exon	24119297	24119477	24119297	ID=Msa0285030-mRNA-1:exon:9152;Parent=Msa0285030-mRNA-1
chr2_3	exon	24119592	24119671	24119592	ID=Msa0285030-mRNA-1:exon:9153;Parent=Msa0285030-mRNA-1
chr2_3	exon	24119845	24119977	24119845	ID=Msa0285030-mRNA-1:exon:9154;Parent=Msa0285030-mRNA-1
chr2_3	exon	24120077	24120271	24120077	ID=Msa0285030-mRNA-1:exon:9155;Parent=Msa0285030-mRNA-1
chr2_3	exon	24121834	24121872	24121834	ID=Msa0285030-mRNA-1:exon:9156;Parent=Msa0285030-mRNA-1
chr2_3	five_prime_UTR	24119297	24119477	24119297	ID=Msa0285030-mRNA-1:five_prime_utr;Parent=Msa0285030-mRNA-1
chr2_3	five_prime_UTR	24119592	24119671	24119592	ID=Msa0285030-mRNA-1:five_prime_utr;Parent=Msa0285030-mRNA-1
chr2_3	five_prime_UTR	24119845	24119977	24119845	ID=Msa0285030-mRNA-1:five_prime_utr;Parent=Msa0285030-mRNA-1
chr2_3	five_prime_UTR	24120077	24120082	24120077	ID=Msa0285030-mRNA-1:five_prime_utr;Parent=Msa0285030-mRNA-1
chr2_3	CDS	24120083	24120271	24120083	ID=Msa0285030-mRNA-1:cds;Parent=Msa0285030-mRNA-1
chr2_3	CDS	24121834	24121872	24121834	ID=Msa0285030-mRNA-1:cds;Parent=Msa0285030-mRNA-1

Gene Sequence	>Msa0285030 ATGTTCTCCAACTCTCTTCCACAACTGCAGGTCTCTGTAGAATATGGGTTATGTGAAATGATGAGCCGGAGGGCAATTAGGCTTGAGGTGGCTCCTAAAGATGAAAATTGGGGTTTCAACATATCAGAGCGTGAGGCCATGCTTCCTGCAGGGACAGTGGATAACAATGTAGAAAGGGTCTATAAAGAGACATATACCGGTAAATATTACAAGCAAAGGACATCTTGA
Protein sequence	>Msa0285030 MFSNSLPQLQVSVEYGLCEMMSRRAIRLEVAPKDENWGFNISEREAMLPAGTVDNNVERVYKETYTGKYYKQRTS*