AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0323870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323870 MtrunA17_Chr5g0405131 92.063 63 5 0 1 63 1 63 5.97e-35 119
Msa0323870 MtrunA17_Chr8g0334871 76.471 68 12 1 1 64 111 178 9.79e-30 108
Msa0323870 MtrunA17_Chr7g0232961 55.696 79 31 1 8 82 142 220 7.34e-21 85.9
Msa0323870 MtrunA17_Chr7g0232491 59.091 66 27 0 8 73 114 179 2.37e-19 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323870 AT3G60420.1 56.897 58 25 0 7 64 123 180 1.12e-15 72.0
Msa0323870 AT3G60450.2 54.386 57 26 0 8 64 142 198 1.25e-14 69.7
Msa0323870 AT3G60450.1 54.386 57 26 0 8 64 110 166 1.28e-14 69.3
Msa0323870 AT3G60440.2 52.632 57 27 0 8 64 133 189 1.13e-13 66.2
Msa0323870 AT3G60440.1 52.632 57 27 0 8 64 133 189 1.68e-13 66.2
Msa0323870 AT3G60415.1 52.632 57 27 0 8 64 109 165 4.89e-13 64.7

Find 121 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACTTGATTGGAATATTTC+AGG 0.168585 2_4:-28586072 None:intergenic
TTGAATGAGAGGATCTATTT+TGG 0.177743 2_4:+28588899 Msa0323870:three_prime_UTR
GATAATATATGCATGTATTT+TGG 0.206206 2_4:-28588503 None:intergenic
TATTGATCTCAAGGGCATTT+TGG 0.225051 2_4:+28586869 Msa0323870:three_prime_UTR
CTGCAGGTCTCTGTAGAATA+TGG 0.240516 2_4:+28584259 Msa0323870:CDS
TGGCTCCTAAAGATGAAAAT+TGG 0.260885 2_4:+28584323 Msa0323870:CDS
TTATGATCACAAACCTTCTT+TGG 0.264058 2_4:-28587803 None:intergenic
CTCCATATGAGTGGCAAATA+TGG 0.266024 2_4:-28585334 None:intergenic
CAAAGAAAAGATTGTCCTTT+AGG 0.290626 2_4:-28586163 None:intergenic
GATTAGGAATGTCCTTAAAA+TGG 0.291784 2_4:-28588874 None:intergenic
GCCACGTACCTGCAAATAAA+AGG 0.291918 2_4:-28589044 None:intergenic
AGAAGCAAACATGTTATTCT+TGG 0.302955 2_4:+28586408 Msa0323870:intron
AGTACACCAATGTTGTTTAC+AGG 0.312922 2_4:-28587722 None:intergenic
TCAAATTGCATTCTTCTGTT+TGG 0.342684 2_4:+28587233 Msa0323870:three_prime_UTR
TCGACAACTTGTATCAATTT+CGG 0.347320 2_4:-28588801 None:intergenic
AATCGTATTCTCGACTTGAT+TGG 0.350616 2_4:-28586083 None:intergenic
AAGCAAATGCCTATCGTGAT+AGG 0.362210 2_4:+28588538 Msa0323870:three_prime_UTR
GGCTCCTAAAGATGAAAATT+GGG 0.366205 2_4:+28584324 Msa0323870:CDS
CCGCTGTTTCTATGCATTGA+AGG 0.376433 2_4:+28589170 Msa0323870:three_prime_UTR
AATGCTCTTGTTCTATATGA+TGG 0.382382 2_4:-28586655 None:intergenic
GCCAGCTTTGATGAATCTTA+AGG 0.400771 2_4:+28586108 Msa0323870:CDS
GGCAATCGTTTCCGCCGCTC+TGG 0.406900 2_4:+28583786 Msa0323870:five_prime_UTR
AAATATGATTGTTAGCAAAC+GGG 0.407617 2_4:+28589082 Msa0323870:three_prime_UTR
TTGGAATCTCCTGTTGGAGT+TGG 0.412688 2_4:+28586427 Msa0323870:three_prime_UTR
TGATGAGCCGGAGGGCAATT+AGG 0.415742 2_4:+28584293 Msa0323870:CDS
AATGGACAAGGACAACAATA+AGG 0.416606 2_4:+28588843 Msa0323870:three_prime_UTR
TACCATATTTGCCACTCATA+TGG 0.416671 2_4:+28585332 Msa0323870:CDS
AAACAACCATTTGGAGTTCA+AGG 0.419670 2_4:+28585422 Msa0323870:CDS
CACTCAACACCTCTTTGAAA+TGG 0.422954 2_4:-28588746 None:intergenic
GTAAACAACATTGGTGTACT+TGG 0.425488 2_4:+28587725 Msa0323870:three_prime_UTR
CAAATATGATTGTTAGCAAA+CGG 0.429314 2_4:+28589081 Msa0323870:three_prime_UTR
AGCAGTTTCAAAGTTGTGTT+TGG 0.435209 2_4:+28587161 Msa0323870:intron
TAAGAAAATCCAACTCCAAC+AGG 0.446307 2_4:-28586436 None:intergenic
AGAGCGGCGGAAACGATTGC+CGG 0.448782 2_4:-28583784 None:intergenic
TCTTAGTTGTGCATATTCAC+TGG 0.451439 2_4:-28586470 None:intergenic
CGTGAGGCCATGCTTCCTGC+AGG 0.455082 2_4:+28584364 Msa0323870:CDS
AGACAATGGATCACATTGTT+GGG 0.461566 2_4:-28584111 None:intergenic
TGAACTCTTTAAAAGAGAAC+AGG 0.466788 2_4:+28587751 Msa0323870:three_prime_UTR
TTATTCTTGGAATCTCCTGT+TGG 0.472255 2_4:+28586421 Msa0323870:three_prime_UTR
CAGACAATGGATCACATTGT+TGG 0.474510 2_4:-28584112 None:intergenic
ATAGGAATACTATAAATCAT+AGG 0.479179 2_4:-28589257 None:intergenic
TTTCCTTCATATTGATCTCA+AGG 0.479618 2_4:+28586860 Msa0323870:three_prime_UTR
GTTTACAGGCTGGTCATTGA+AGG 0.481258 2_4:-28587708 None:intergenic
TCTAAAAGATATACCAAAGA+AGG 0.481427 2_4:+28587790 Msa0323870:three_prime_UTR
TATAAGTCTGAAATTTATTG+TGG 0.487827 2_4:+28586274 Msa0323870:three_prime_UTR
TTCAACGGCGACCGGTGCAC+CGG 0.494823 2_4:+28583765 Msa0323870:five_prime_UTR
ATACTACCTTGAACTCCAAA+TGG 0.498641 2_4:-28585428 None:intergenic
TAAAGTCTCCGGCAGGGAGA+TGG 0.499615 2_4:-28588713 None:intergenic
TCCTTAAGATTCATCAAAGC+TGG 0.503144 2_4:-28586109 None:intergenic
ATAGCAGGAGAGAGCTATGC+AGG 0.504990 2_4:+28586682 Msa0323870:three_prime_UTR
GTCAACATTTGTAAAGTCTC+CGG 0.507418 2_4:-28588724 None:intergenic
TGCAGGTCTCTGTAGAATAT+GGG 0.508561 2_4:+28584260 Msa0323870:CDS
ATTGACATTAGGAAAAGAAA+AGG 0.511983 2_4:+28585981 Msa0323870:intron
CTGCAGTTGTGGAAGAGAGT+TGG 0.517648 2_4:-28584242 None:intergenic
TGCCCTTGAGATCAATATGA+AGG 0.519086 2_4:-28586863 None:intergenic
ATTCATCATGCTTTGTTGAG+TGG 0.519397 2_4:+28584085 Msa0323870:five_prime_UTR
CAACTCTCTTCCACAACTGC+AGG 0.519772 2_4:+28584243 Msa0323870:CDS
CACTGTCCCTGCAGGAAGCA+TGG 0.520311 2_4:-28584371 None:intergenic
ACATTTGTAAAGTCTCCGGC+AGG 0.522144 2_4:-28588720 None:intergenic
AAGTCTGAAATTTATTGTGG+TGG 0.522948 2_4:+28586277 Msa0323870:three_prime_UTR
ATCCTCTCATTCAAGAGATT+AGG 0.524602 2_4:-28588890 None:intergenic
CAGGTACGTGGCAAGCGAGT+TGG 0.525525 2_4:+28589055 Msa0323870:three_prime_UTR
ATGCAATTTGAGTATCTCCT+TGG 0.525810 2_4:-28587221 None:intergenic
TTGTTATCCACTGTCCCTGC+AGG 0.531343 2_4:-28584379 None:intergenic
AATGTCCTTAAAATGGATCC+AGG 0.539317 2_4:-28588867 None:intergenic
AGTGGATAACAATGTAGAAA+GGG 0.541133 2_4:+28584390 Msa0323870:CDS
GGAGCAACTTCAACGGCGAC+CGG 0.542178 2_4:+28583757 Msa0323870:five_prime_UTR
ACACGTGTAACAGGTACAAA+GGG 0.542235 2_4:+28588686 Msa0323870:intron
TGAGATCAATATGAAGGAAA+GGG 0.542741 2_4:-28586857 None:intergenic
TTAGCTTTCCCTATCACGAT+AGG 0.543279 2_4:-28588547 None:intergenic
CAGTGGATAACAATGTAGAA+AGG 0.543991 2_4:+28584389 Msa0323870:CDS
AGCAAATGCCTATCGTGATA+GGG 0.544684 2_4:+28588539 Msa0323870:three_prime_UTR
AGGGAGTTCCATCTCCCTGC+CGG 0.550817 2_4:+28588705 Msa0323870:three_prime_UTR
CACCAATGTTGTTTACAGGC+TGG 0.551868 2_4:-28587718 None:intergenic
TTGAGATCAATATGAAGGAA+AGG 0.553455 2_4:-28586858 None:intergenic
ATGATGAGTTCAGCAAGCTC+TGG 0.554264 2_4:-28586819 None:intergenic
TCTACAGAGACCTGCAGTTG+TGG 0.555743 2_4:-28584253 None:intergenic
GGAAACGATTGCCGGTGCAC+CGG 0.557749 2_4:-28583776 None:intergenic
TGTAGAAAGGGTCTATAAAG+AGG 0.560431 2_4:+28584402 Msa0323870:CDS
TTCCTAATCTCTTGAATGAG+AGG 0.563360 2_4:+28588888 Msa0323870:three_prime_UTR
TTCCTTCATATTGATCTCAA+GGG 0.566425 2_4:+28586861 Msa0323870:three_prime_UTR
ACATTAGGAAAAGAAAAGGA+TGG 0.572345 2_4:+28585985 Msa0323870:intron
AAATGTTGACCATTTCAAAG+AGG 0.573061 2_4:+28588737 Msa0323870:three_prime_UTR
CCTCAAGCCTAATTGCCCTC+CGG 0.574132 2_4:-28584300 None:intergenic
AGATCGATTGAAGCAATGAA+AGG 0.576201 2_4:+28584012 Msa0323870:five_prime_UTR
ATCAAGTCGAGAATACGATT+CGG 0.577197 2_4:+28586086 Msa0323870:CDS
AGTAATCGCAAGACAAGAGA+TGG 0.579715 2_4:+28587198 Msa0323870:three_prime_UTR
AACTCATTGATAACCTGGAG+GGG 0.583061 2_4:+28588581 Msa0323870:three_prime_UTR
CAATGAGTTTGCAAGAGCAA+TGG 0.586120 2_4:+28588825 Msa0323870:three_prime_UTR
CGCTATATTCTCCATATGAG+TGG 0.586227 2_4:-28585343 None:intergenic
CAACTAAGAGATGACTTCAC+AGG 0.589863 2_4:+28586484 Msa0323870:three_prime_UTR
ACTCATTGATAACCTGGAGG+GGG 0.601551 2_4:+28588582 Msa0323870:three_prime_UTR
CATTCACTATTAATAAAGAG+AGG 0.604684 2_4:-28588947 None:intergenic
AAACTCATTGATAACCTGGA+GGG 0.604910 2_4:+28588580 Msa0323870:three_prime_UTR
CAAGGACAACAATAAGGACC+TGG 0.605642 2_4:+28588849 Msa0323870:three_prime_UTR
ATCATATTAAACAAATTACA+AGG 0.606036 2_4:-28589020 None:intergenic
TTATTGTGGTGGTCTTTGAG+AGG 0.606373 2_4:+28586288 Msa0323870:three_prime_UTR
AACACGTGTAACAGGTACAA+AGG 0.609571 2_4:+28588685 Msa0323870:intron
CCGGAGGGCAATTAGGCTTG+AGG 0.610283 2_4:+28584300 Msa0323870:CDS
AATATGATTGTTAGCAAACG+GGG 0.610424 2_4:+28589083 Msa0323870:three_prime_UTR
GAGGGCAATTAGGCTTGAGG+TGG 0.611737 2_4:+28584303 Msa0323870:CDS
TTGGATCGGAGCAACTTCAA+CGG 0.616745 2_4:+28583750 Msa0323870:five_prime_UTR
CATGCTTCCTGCAGGGACAG+TGG 0.620249 2_4:+28584372 Msa0323870:CDS
GTTTGCAAGAGCAATGGACA+AGG 0.626826 2_4:+28588831 Msa0323870:three_prime_UTR
GCTCCTAAAGATGAAAATTG+GGG 0.633816 2_4:+28584325 Msa0323870:CDS
CGCAAGACAAGAGATGGCCA+AGG 0.635388 2_4:+28587204 Msa0323870:three_prime_UTR
GGTTATGTGAAATGATGAGC+CGG 0.636708 2_4:+28584281 Msa0323870:CDS
GTGAGGCCATGCTTCCTGCA+GGG 0.637114 2_4:+28584365 Msa0323870:CDS
ATTCACTATTAATAAAGAGA+GGG 0.638070 2_4:-28588946 None:intergenic
GACCAGCCTGTAAACAACAT+TGG 0.640947 2_4:+28587716 Msa0323870:three_prime_UTR
TTTCAACATATCAGAGCGTG+AGG 0.644870 2_4:+28584348 Msa0323870:CDS
TATGTGAAATGATGAGCCGG+AGG 0.656757 2_4:+28584284 Msa0323870:CDS
GTGCTTATCATGTTGCACAA+AGG 0.657205 2_4:+28586041 Msa0323870:CDS
TGATTCAAAATCCAGAGCGG+CGG 0.657362 2_4:-28583797 None:intergenic
CACTCATATGGAGAATATAG+CGG 0.659666 2_4:+28585344 Msa0323870:CDS
CCTTCAATGCATAGAAACAG+CGG 0.663560 2_4:-28589170 None:intergenic
ATGTGAAATGATGAGCCGGA+GGG 0.678863 2_4:+28584285 Msa0323870:CDS
AATGAAATGAATGAAGACCA+AGG 0.691600 2_4:+28583608 Msa0323870:five_prime_UTR
CATTTGTAAAGTCTCCGGCA+GGG 0.692662 2_4:-28588719 None:intergenic
AAAACTCATTGATAACCTGG+AGG 0.707690 2_4:+28588579 Msa0323870:three_prime_UTR
TTCTGATTCAAAATCCAGAG+CGG 0.728940 2_4:-28583800 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTATTTTTAATTTTT+TGG + chr2_4:28587342-28587361 Msa0323870:intron 0.0%
!!! AATTTTATTTTTAATTTTTT+GGG + chr2_4:28587343-28587362 Msa0323870:intron 0.0%
!!! ATGTTTGTTTATTTTTAAAA+GGG + chr2_4:28583944-28583963 Msa0323870:intron 10.0%
!!! AAATAATGCTTTTATTTTTT+AGG + chr2_4:28586984-28587003 Msa0323870:intron 10.0%
!! CTTAAATTTATAATCTAAAA+GGG - chr2_4:28588296-28588315 None:intergenic 10.0%
!!! GATGTTTGTTTATTTTTAAA+AGG + chr2_4:28583943-28583962 Msa0323870:intron 15.0%
!!! TTTCAATTGCAAAATATTTT+TGG + chr2_4:28584445-28584464 Msa0323870:intron 15.0%
!!! CTATTCTTTTTAAAATCAAT+TGG + chr2_4:28585042-28585061 Msa0323870:intron 15.0%
!! CTATTTACATGTTTATATAA+TGG + chr2_4:28585265-28585284 Msa0323870:intron 15.0%
!! TATAGGAAAAATAAAATAGA+GGG - chr2_4:28585545-28585564 None:intergenic 15.0%
!! ATATAGGAAAAATAAAATAG+AGG - chr2_4:28585546-28585565 None:intergenic 15.0%
!! ATCTATTCTTAAATCTTAAA+AGG - chr2_4:28585720-28585739 None:intergenic 15.0%
!!! AAAAAGTATTATTAGATTAG+AGG + chr2_4:28585836-28585855 Msa0323870:intron 15.0%
!! TTTATGTTTAACACTAATAA+TGG - chr2_4:28585923-28585942 None:intergenic 15.0%
!! ATAATAACAAAGAAAATCTT+GGG - chr2_4:28587616-28587635 None:intergenic 15.0%
!! AATAATAACAAAGAAAATCT+TGG - chr2_4:28587617-28587636 None:intergenic 15.0%
!! GCTTAAATTTATAATCTAAA+AGG - chr2_4:28588297-28588316 None:intergenic 15.0%
!! ATCATATTAAACAAATTACA+AGG - chr2_4:28589023-28589042 None:intergenic 15.0%
!!! TTTTGATTAAACAAAAGATG+AGG - chr2_4:28583640-28583659 None:intergenic 20.0%
!! GTTTAATCAAAAATCATGAT+CGG + chr2_4:28583648-28583667 Msa0323870:intron 20.0%
!!! TTTGTTTTTCCAGAATTTTT+TGG + chr2_4:28583731-28583750 Msa0323870:intron 20.0%
!!! GTTTTTTCGTTTTTAAGTTA+TGG + chr2_4:28583905-28583924 Msa0323870:intron 20.0%
!!! GTTATGGTTTTATTTTGAAT+TGG + chr2_4:28583921-28583940 Msa0323870:intron 20.0%
!!! ATCATTACTTTTTGTGTTTA+TGG + chr2_4:28584490-28584509 Msa0323870:intron 20.0%
!! GTGAAGAAAAAAAAATTGTT+AGG + chr2_4:28584547-28584566 Msa0323870:intron 20.0%
!! AATCCTTAAGATTCATAATA+TGG + chr2_4:28584706-28584725 Msa0323870:intron 20.0%
!! AAAACAATTAAACTTAAGCT+CGG - chr2_4:28584986-28585005 None:intergenic 20.0%
!!! AGCTTAAGTTTAATTGTTTT+TGG + chr2_4:28584986-28585005 Msa0323870:intron 20.0%
!! CTGAAAGAAGATTAAAAATA+TGG - chr2_4:28585309-28585328 None:intergenic 20.0%
!!! CATATTTTTAATCTTCTTTC+AGG + chr2_4:28585307-28585326 Msa0323870:intron 20.0%
!! TGTTTGAATCTTAAACATAA+AGG + chr2_4:28585640-28585659 Msa0323870:intron 20.0%
!! TATTAGTGTTAAACATAAAC+CGG + chr2_4:28585924-28585943 Msa0323870:intron 20.0%
!!! TATAAGTCTGAAATTTATTG+TGG + chr2_4:28586274-28586293 Msa0323870:three_prime_UTR 20.0%
!! AAACTAACTAAACAAAAATC+AGG - chr2_4:28586334-28586353 None:intergenic 20.0%
!! CAAATTAAATCATACAATCA+TGG - chr2_4:28587305-28587324 None:intergenic 20.0%
!! CATGATTGTATGATTTAATT+TGG + chr2_4:28587303-28587322 Msa0323870:intron 20.0%
!! ACAATTTAAATATGTCCATA+TGG + chr2_4:28587370-28587389 Msa0323870:intron 20.0%
!! AATAAGATGATAGCAATTTA+TGG + chr2_4:28587518-28587537 Msa0323870:intron 20.0%
!! ATTTATATGAGCATAAATAG+TGG - chr2_4:28587580-28587599 None:intergenic 20.0%
!!! CATGTACTTTTTAGTATATT+TGG + chr2_4:28587986-28588005 Msa0323870:intron 20.0%
!!! TACTTTTTAGTATATTTGGT+GGG + chr2_4:28587990-28588009 Msa0323870:intron 20.0%
!!! TTTTCTTAAGAAATTAACCT+GGG + chr2_4:28588196-28588215 Msa0323870:intron 20.0%
!!! GATAATATATGCATGTATTT+TGG - chr2_4:28588506-28588525 None:intergenic 20.0%
!! ATTCACTATTAATAAAGAGA+GGG - chr2_4:28588949-28588968 None:intergenic 20.0%
!! ATTCTGGAAAAACAAAAACT+TGG - chr2_4:28583727-28583746 None:intergenic 25.0%
!!! TTTTCCAGAATTTTTTGGAT+CGG + chr2_4:28583736-28583755 Msa0323870:intron 25.0%
! ATTGTCATGACATAAAATTG+GGG - chr2_4:28583843-28583862 None:intergenic 25.0%
! GATTGTCATGACATAAAATT+GGG - chr2_4:28583844-28583863 None:intergenic 25.0%
! TGATTGTCATGACATAAAAT+TGG - chr2_4:28583845-28583864 None:intergenic 25.0%
! AACGAAAAAACACAGTAAAA+AGG - chr2_4:28583896-28583915 None:intergenic 25.0%
! AAAGTTTAAAGATGACGAAA+TGG - chr2_4:28584163-28584182 None:intergenic 25.0%
! TTCTTCACATCAGTTAAAAT+GGG - chr2_4:28584535-28584554 None:intergenic 25.0%
! TTTCTTCACATCAGTTAAAA+TGG - chr2_4:28584536-28584555 None:intergenic 25.0%
! AAGAATGTTCAAATAAGATG+AGG + chr2_4:28584604-28584623 Msa0323870:intron 25.0%
! AGAATGTTCAAATAAGATGA+GGG + chr2_4:28584605-28584624 Msa0323870:intron 25.0%
! AAGCCATATTATGAATCTTA+AGG - chr2_4:28584712-28584731 None:intergenic 25.0%
! TTCTTCCAAAAAATCTGAAT+TGG + chr2_4:28584787-28584806 Msa0323870:intron 25.0%
! GTCATCTATAAGAAAACAAT+AGG - chr2_4:28584836-28584855 None:intergenic 25.0%
!! ATTGTTTTCTTATAGATGAC+AGG + chr2_4:28584836-28584855 Msa0323870:intron 25.0%
! ATCTCAATTGTTTCATACTT+TGG + chr2_4:28585133-28585152 Msa0323870:intron 25.0%
!!! TTCTTACTTTTGTGTTATCT+TGG + chr2_4:28585159-28585178 Msa0323870:intron 25.0%
! ACTAACCAAAAAACAGAAAA+GGG + chr2_4:28585224-28585243 Msa0323870:intron 25.0%
!!! TTTTTAATTCGACATGAAAG+TGG - chr2_4:28585404-28585423 None:intergenic 25.0%
! CGAATTAAAAAACAACCATT+TGG + chr2_4:28585413-28585432 Msa0323870:CDS 25.0%
! TATGAGTAAAAGATGAAAAC+AGG + chr2_4:28585669-28585688 Msa0323870:intron 25.0%
! TCTTAAATCTTAAAAGGATG+AGG - chr2_4:28585714-28585733 None:intergenic 25.0%
! TTATTAGATTAGAGGTAGAA+TGG + chr2_4:28585844-28585863 Msa0323870:intron 25.0%
! ATTGACATTAGGAAAAGAAA+AGG + chr2_4:28585981-28586000 Msa0323870:intron 25.0%
!! TAAAGGACAATCTTTTCTTT+GGG + chr2_4:28586165-28586184 Msa0323870:three_prime_UTR 25.0%
! TTGAATTGTTAATTGATGCT+TGG + chr2_4:28586352-28586371 Msa0323870:intron 25.0%
!!! CTTGGTATTTTTTATATACG+TGG + chr2_4:28586370-28586389 Msa0323870:intron 25.0%
!! AGCTAGATTTTAAATCATGT+AGG - chr2_4:28586901-28586920 None:intergenic 25.0%
! GAATTATGTGTTCTATTTGT+AGG + chr2_4:28587094-28587113 Msa0323870:intron 25.0%
!!! AAACTATCTTTTAGAGCTTT+TGG + chr2_4:28587494-28587513 Msa0323870:intron 25.0%
!! TATCTTTTAGATCTGTAAGA+AGG - chr2_4:28587781-28587800 None:intergenic 25.0%
! TCTAAAAGATATACCAAAGA+AGG + chr2_4:28587790-28587809 Msa0323870:three_prime_UTR 25.0%
!!! GTACTTTTTAGTATATTTGG+TGG + chr2_4:28587989-28588008 Msa0323870:intron 25.0%
!!! ACTTTTTAGTATATTTGGTG+GGG + chr2_4:28587991-28588010 Msa0323870:intron 25.0%
!! GTTTTCTTAAGAAATTAACC+TGG + chr2_4:28588195-28588214 Msa0323870:intron 25.0%
!!! TGATATTTTATTTAGCGTGA+AGG + chr2_4:28588227-28588246 Msa0323870:intron 25.0%
!!! GATATTTTATTTAGCGTGAA+GGG + chr2_4:28588228-28588247 Msa0323870:intron 25.0%
!!! ATATTTTATTTAGCGTGAAG+GGG + chr2_4:28588229-28588248 Msa0323870:intron 25.0%
! AATACTAAATGTTAGCATAG+TGG - chr2_4:28588393-28588412 None:intergenic 25.0%
! TCTATTGAAGTTACATTTCT+TGG + chr2_4:28588422-28588441 Msa0323870:intron 25.0%
! ATTCATTGATCTACATGTAT+AGG - chr2_4:28588462-28588481 None:intergenic 25.0%
! AGTAATTAAAGAGTTGTTTG+TGG - chr2_4:28588627-28588646 None:intergenic 25.0%
! CATTCACTATTAATAAAGAG+AGG - chr2_4:28588950-28588969 None:intergenic 25.0%
! CAAATATGATTGTTAGCAAA+CGG + chr2_4:28589081-28589100 Msa0323870:three_prime_UTR 25.0%
! AAATATGATTGTTAGCAAAC+GGG + chr2_4:28589082-28589101 Msa0323870:three_prime_UTR 25.0%
AATGAAATGAATGAAGACCA+AGG + chr2_4:28583608-28583627 Msa0323870:five_prime_UTR 30.0%
AAAAGATGAGGAAATTACCT+TGG - chr2_4:28583628-28583647 None:intergenic 30.0%
AACATTACCAACCATTAAGT+TGG + chr2_4:28584210-28584229 Msa0323870:intron 30.0%
AACATTACCAACTTAATGGT+TGG - chr2_4:28584220-28584239 None:intergenic 30.0%
! AAACCCCAATTTTCATCTTT+AGG - chr2_4:28584331-28584350 None:intergenic 30.0%
AGTGGATAACAATGTAGAAA+GGG + chr2_4:28584390-28584409 Msa0323870:CDS 30.0%
TCATTTAAGTGTTTGTGAGA+TGG + chr2_4:28584905-28584924 Msa0323870:intron 30.0%
! GACAAAGGATATTTTTCACA+AGG + chr2_4:28584927-28584946 Msa0323870:intron 30.0%
!! ATAGTTTTCACTTTTCAGTC+AGG + chr2_4:28585197-28585216 Msa0323870:intron 30.0%
CACTAACCAAAAAACAGAAA+AGG + chr2_4:28585223-28585242 Msa0323870:intron 30.0%
! AAGTGGAGAATTTTCACATT+GGG - chr2_4:28585387-28585406 None:intergenic 30.0%
! AAAGTGGAGAATTTTCACAT+TGG - chr2_4:28585388-28585407 None:intergenic 30.0%
! ATGATAGGAAAGGATTTGTT+AGG + chr2_4:28585477-28585496 Msa0323870:intron 30.0%
!!! AGTTTGAGTTTTGAGTTTGA+GGG - chr2_4:28585586-28585605 None:intergenic 30.0%
!!! TAGTTTGAGTTTTGAGTTTG+AGG - chr2_4:28585587-28585606 None:intergenic 30.0%
AACTCAAAACTCAAACTACT+TGG + chr2_4:28585589-28585608 Msa0323870:intron 30.0%
CAAACTTGGACATAGAATAA+TGG + chr2_4:28585867-28585886 Msa0323870:intron 30.0%
TAATGGCGAATCAATAATTC+TGG + chr2_4:28585884-28585903 Msa0323870:intron 30.0%
ACACTAATAATGGTACAACA+GGG - chr2_4:28585913-28585932 None:intergenic 30.0%
AACACTAATAATGGTACAAC+AGG - chr2_4:28585914-28585933 None:intergenic 30.0%
TGATATGACTCATTGACATT+AGG + chr2_4:28585970-28585989 Msa0323870:intron 30.0%
ACATTAGGAAAAGAAAAGGA+TGG + chr2_4:28585985-28586004 Msa0323870:intron 30.0%
!! TCAAGCCAAAGCTTTAAAAA+TGG + chr2_4:28586140-28586159 Msa0323870:three_prime_UTR 30.0%
!!! TTAGGCCATTTTTAAAGCTT+TGG - chr2_4:28586148-28586167 None:intergenic 30.0%
!! AAGCTTTAAAAATGGCCTAA+AGG + chr2_4:28586148-28586167 Msa0323870:three_prime_UTR 30.0%
CAAAGAAAAGATTGTCCTTT+AGG - chr2_4:28586166-28586185 None:intergenic 30.0%
! CTAAAGGACAATCTTTTCTT+TGG + chr2_4:28586164-28586183 Msa0323870:three_prime_UTR 30.0%
! AAGTCTGAAATTTATTGTGG+TGG + chr2_4:28586277-28586296 Msa0323870:three_prime_UTR 30.0%
AGAAGCAAACATGTTATTCT+TGG + chr2_4:28586408-28586427 Msa0323870:intron 30.0%
AATGCTCTTGTTCTATATGA+TGG - chr2_4:28586658-28586677 None:intergenic 30.0%
! GATCATAAAACATGTTTTGC+AGG + chr2_4:28586786-28586805 Msa0323870:intron 30.0%
TGAGATCAATATGAAGGAAA+GGG - chr2_4:28586860-28586879 None:intergenic 30.0%
TTGAGATCAATATGAAGGAA+AGG - chr2_4:28586861-28586880 None:intergenic 30.0%
TTTCCTTCATATTGATCTCA+AGG + chr2_4:28586860-28586879 Msa0323870:three_prime_UTR 30.0%
TTCCTTCATATTGATCTCAA+GGG + chr2_4:28586861-28586880 Msa0323870:three_prime_UTR 30.0%
!!! CTTTTATTTTTTAGGCAGCT+GGG + chr2_4:28586992-28587011 Msa0323870:intron 30.0%
CTATTGTGTCAGAAAATTGA+GGG + chr2_4:28587041-28587060 Msa0323870:intron 30.0%
TTACATGAAATGTTGCATGT+TGG + chr2_4:28587138-28587157 Msa0323870:intron 30.0%
TCAAATTGCATTCTTCTGTT+TGG + chr2_4:28587233-28587252 Msa0323870:three_prime_UTR 30.0%
CATGGATAAGAAGATAACAA+TGG - chr2_4:28587287-28587306 None:intergenic 30.0%
! TGAACTCTTTAAAAGAGAAC+AGG + chr2_4:28587751-28587770 Msa0323870:three_prime_UTR 30.0%
TTATGATCACAAACCTTCTT+TGG - chr2_4:28587806-28587825 None:intergenic 30.0%
TCTATGATGAGATACATTTG+TGG + chr2_4:28587914-28587933 Msa0323870:intron 30.0%
CTATGATGAGATACATTTGT+GGG + chr2_4:28587915-28587934 Msa0323870:intron 30.0%
CAATTATCTTTCAACTTCTG+TGG - chr2_4:28587965-28587984 None:intergenic 30.0%
CACAGAAGTTGAAAGATAAT+TGG + chr2_4:28587963-28587982 Msa0323870:intron 30.0%
CAGCAAAAATTTGCATAACA+TGG - chr2_4:28588057-28588076 None:intergenic 30.0%
! TATTGATTACATAGCTGTTG+TGG + chr2_4:28588080-28588099 Msa0323870:intron 30.0%
! TAAGCTGAAATTCTAGAGAT+TGG - chr2_4:28588108-28588127 None:intergenic 30.0%
AATTTCAGTTCAAACTCTGA+TGG - chr2_4:28588340-28588359 None:intergenic 30.0%
AAAATTGAAACACGTGTAAC+AGG + chr2_4:28588677-28588696 Msa0323870:intron 30.0%
AAATGTTGACCATTTCAAAG+AGG + chr2_4:28588737-28588756 Msa0323870:three_prime_UTR 30.0%
TCGACAACTTGTATCAATTT+CGG - chr2_4:28588804-28588823 None:intergenic 30.0%
GATTAGGAATGTCCTTAAAA+TGG - chr2_4:28588877-28588896 None:intergenic 30.0%
! TTGAATGAGAGGATCTATTT+TGG + chr2_4:28588899-28588918 Msa0323870:three_prime_UTR 30.0%
! TGAATGAGAGGATCTATTTT+GGG + chr2_4:28588900-28588919 Msa0323870:three_prime_UTR 30.0%
!! ATATGATGCCTTTTATTTGC+AGG + chr2_4:28589036-28589055 Msa0323870:three_prime_UTR 30.0%
AATATGATTGTTAGCAAACG+GGG + chr2_4:28589083-28589102 Msa0323870:three_prime_UTR 30.0%
! TTCTATACTCTTTTGCTTAG+TGG + chr2_4:28589204-28589223 Msa0323870:three_prime_UTR 30.0%
TTCTGATTCAAAATCCAGAG+CGG - chr2_4:28583803-28583822 None:intergenic 35.0%
AGATCGATTGAAGCAATGAA+AGG + chr2_4:28584012-28584031 Msa0323870:five_prime_UTR 35.0%
! ATTCATCATGCTTTGTTGAG+TGG + chr2_4:28584085-28584104 Msa0323870:five_prime_UTR 35.0%
AGACAATGGATCACATTGTT+GGG - chr2_4:28584114-28584133 None:intergenic 35.0%
GTTTAAAGATGACGAAATGG+AGG - chr2_4:28584160-28584179 None:intergenic 35.0%
GGAGAACATTACCAACTTAA+TGG - chr2_4:28584224-28584243 None:intergenic 35.0%
TGGCTCCTAAAGATGAAAAT+TGG + chr2_4:28584323-28584342 Msa0323870:CDS 35.0%
GGCTCCTAAAGATGAAAATT+GGG + chr2_4:28584324-28584343 Msa0323870:CDS 35.0%
GCTCCTAAAGATGAAAATTG+GGG + chr2_4:28584325-28584344 Msa0323870:CDS 35.0%
CAGTGGATAACAATGTAGAA+AGG + chr2_4:28584389-28584408 Msa0323870:CDS 35.0%
TGTAGAAAGGGTCTATAAAG+AGG + chr2_4:28584402-28584421 Msa0323870:CDS 35.0%
! GGGTCTATAAAGAGGTATAA+TGG + chr2_4:28584410-28584429 Msa0323870:intron 35.0%
!!! CCTATCCTTTTCTAGAGTTT+GGG - chr2_4:28584658-28584677 None:intergenic 35.0%
!!! ACCTATCCTTTTCTAGAGTT+TGG - chr2_4:28584659-28584678 None:intergenic 35.0%
AGGATAGGTCAAATAAGATG+AGG + chr2_4:28584670-28584689 Msa0323870:intron 35.0%
!!! GAGCTCCAATTCAGATTTTT+TGG - chr2_4:28584795-28584814 None:intergenic 35.0%
AAAGCACACTTCTTCAAAGA+TGG - chr2_4:28585070-28585089 None:intergenic 35.0%
ACCAAAAAACAGAAAAGGGA+AGG + chr2_4:28585228-28585247 Msa0323870:intron 35.0%
CCAAAAAACAGAAAAGGGAA+GGG + chr2_4:28585229-28585248 Msa0323870:intron 35.0%
CAAAAAACAGAAAAGGGAAG+GGG + chr2_4:28585230-28585249 Msa0323870:intron 35.0%
TACCATATTTGCCACTCATA+TGG + chr2_4:28585332-28585351 Msa0323870:CDS 35.0%
CACTCATATGGAGAATATAG+CGG + chr2_4:28585344-28585363 Msa0323870:CDS 35.0%
! AAACAACCATTTGGAGTTCA+AGG + chr2_4:28585422-28585441 Msa0323870:CDS 35.0%
ATACTACCTTGAACTCCAAA+TGG - chr2_4:28585431-28585450 None:intergenic 35.0%
!! TTCATTTTGACCTGCATGAT+AGG + chr2_4:28585462-28585481 Msa0323870:intron 35.0%
GGGTATCATGCATGATATAT+AGG - chr2_4:28585562-28585581 None:intergenic 35.0%
!!! TTTGAGTTTTGAGTTTGAGG+GGG - chr2_4:28585584-28585603 None:intergenic 35.0%
!!! GTTTGAGTTTTGAGTTTGAG+GGG - chr2_4:28585585-28585604 None:intergenic 35.0%
ATCTTAAAAGGATGAGGACA+TGG - chr2_4:28585708-28585727 None:intergenic 35.0%
AGAAAGTTTGCAGAAGATCA+AGG - chr2_4:28585805-28585824 None:intergenic 35.0%
TTGATCTTCTGCAAACTTTC+TGG + chr2_4:28585804-28585823 Msa0323870:intron 35.0%
! TGCAAACTTTCTGGTGAAAT+AGG + chr2_4:28585813-28585832 Msa0323870:intron 35.0%
CGACTTGATTGGAATATTTC+AGG - chr2_4:28586075-28586094 None:intergenic 35.0%
! AATCGTATTCTCGACTTGAT+TGG - chr2_4:28586086-28586105 None:intergenic 35.0%
ATCAAGTCGAGAATACGATT+CGG + chr2_4:28586086-28586105 Msa0323870:CDS 35.0%
TCCTTAAGATTCATCAAAGC+TGG - chr2_4:28586112-28586131 None:intergenic 35.0%
TTATTCTTGGAATCTCCTGT+TGG + chr2_4:28586421-28586440 Msa0323870:three_prime_UTR 35.0%
TAAGAAAATCCAACTCCAAC+AGG - chr2_4:28586439-28586458 None:intergenic 35.0%
TCTTAGTTGTGCATATTCAC+TGG - chr2_4:28586473-28586492 None:intergenic 35.0%
! CTTACACTTTTCTGCACAAT+TGG + chr2_4:28586620-28586639 Msa0323870:three_prime_UTR 35.0%
!!! ACAAGAGCATTTTACATAGC+AGG + chr2_4:28586667-28586686 Msa0323870:three_prime_UTR 35.0%
!!! TATTGATCTCAAGGGCATTT+TGG + chr2_4:28586869-28586888 Msa0323870:three_prime_UTR 35.0%
!!! GCTTTTATTTTTTAGGCAGC+TGG + chr2_4:28586991-28587010 Msa0323870:intron 35.0%
GCTATTGTGTCAGAAAATTG+AGG + chr2_4:28587040-28587059 Msa0323870:intron 35.0%
AGCAGTTTCAAAGTTGTGTT+TGG + chr2_4:28587161-28587180 Msa0323870:intron 35.0%
ATGCAATTTGAGTATCTCCT+TGG - chr2_4:28587224-28587243 None:intergenic 35.0%
TGATAAGCAGTTATGCCATA+TGG - chr2_4:28587388-28587407 None:intergenic 35.0%
AAGAAAATCTTGGGTCTGTT+CGG - chr2_4:28587607-28587626 None:intergenic 35.0%
CTTGTGACATTGCCTTATAT+TGG + chr2_4:28587680-28587699 Msa0323870:intron 35.0%
TTGAAGGATCTGCCAATATA+AGG - chr2_4:28587695-28587714 None:intergenic 35.0%
! AGTACACCAATGTTGTTTAC+AGG - chr2_4:28587725-28587744 None:intergenic 35.0%
GTAAACAACATTGGTGTACT+TGG + chr2_4:28587725-28587744 Msa0323870:three_prime_UTR 35.0%
GGTGGGGAAACATTAATAAA+AGG + chr2_4:28588007-28588026 Msa0323870:intron 35.0%
GCATAACATGGTACAAAATG+CGG - chr2_4:28588045-28588064 None:intergenic 35.0%
TCTTAAGAAATTAACCTGGG+AGG + chr2_4:28588199-28588218 Msa0323870:intron 35.0%
CTTAAGAAATTAACCTGGGA+GGG + chr2_4:28588200-28588219 Msa0323870:intron 35.0%
TTAAGAAATTAACCTGGGAG+GGG + chr2_4:28588201-28588220 Msa0323870:intron 35.0%
GTCAACATTTGTAAAGTCTC+CGG - chr2_4:28588727-28588746 None:intergenic 35.0%
AATGGACAAGGACAACAATA+AGG + chr2_4:28588843-28588862 Msa0323870:three_prime_UTR 35.0%
AATGTCCTTAAAATGGATCC+AGG - chr2_4:28588870-28588889 None:intergenic 35.0%
TTCCTAATCTCTTGAATGAG+AGG + chr2_4:28588888-28588907 Msa0323870:three_prime_UTR 35.0%
ATCCTCTCATTCAAGAGATT+AGG - chr2_4:28588893-28588912 None:intergenic 35.0%
TGTTGCTATGCATGTTCGAT+TGG + chr2_4:28583697-28583716 Msa0323870:intron 40.0%
TGCTCCGATCCAAAAAATTC+TGG - chr2_4:28583743-28583762 None:intergenic 40.0%
!! GCTCTGGATTTTGAATCAGA+AGG + chr2_4:28583802-28583821 Msa0323870:five_prime_UTR 40.0%
CAGACAATGGATCACATTGT+TGG - chr2_4:28584115-28584134 None:intergenic 40.0%
ATGGAGGTAATTCAACTGGA+GGG - chr2_4:28584144-28584163 None:intergenic 40.0%
AATGGAGGTAATTCAACTGG+AGG - chr2_4:28584145-28584164 None:intergenic 40.0%
CGAAATGGAGGTAATTCAAC+TGG - chr2_4:28584148-28584167 None:intergenic 40.0%
TGCAGGTCTCTGTAGAATAT+GGG + chr2_4:28584260-28584279 Msa0323870:CDS 40.0%
GGTTATGTGAAATGATGAGC+CGG + chr2_4:28584281-28584300 Msa0323870:CDS 40.0%
TTTCAACATATCAGAGCGTG+AGG + chr2_4:28584348-28584367 Msa0323870:CDS 40.0%
! ATGAGCCCAAACTCTAGAAA+AGG + chr2_4:28584650-28584669 Msa0323870:intron 40.0%
! CCCAAACTCTAGAAAAGGAT+AGG + chr2_4:28584655-28584674 Msa0323870:intron 40.0%
AGTGTTTGTGAGATGGACAA+AGG + chr2_4:28584912-28584931 Msa0323870:intron 40.0%
! CTTTTGTGTTATCTTGGCCA+TGG + chr2_4:28585165-28585184 Msa0323870:intron 40.0%
AAAACTATCACCATGCTCCA+TGG - chr2_4:28585185-28585204 None:intergenic 40.0%
!! CCCTTCCCTTTTCTGTTTTT+TGG - chr2_4:28585232-28585251 None:intergenic 40.0%
CTCCATATGAGTGGCAAATA+TGG - chr2_4:28585337-28585356 None:intergenic 40.0%
CGCTATATTCTCCATATGAG+TGG - chr2_4:28585346-28585365 None:intergenic 40.0%
TTTGACCTGCATGATAGGAA+AGG + chr2_4:28585467-28585486 Msa0323870:intron 40.0%
CAAATCCTTTCCTATCATGC+AGG - chr2_4:28585475-28585494 None:intergenic 40.0%
GAAGAATGTATCAGCTGTGT+TGG + chr2_4:28585513-28585532 Msa0323870:intron 40.0%
!!! TTGAGTTTTGAGTTTGAGGG+GGG - chr2_4:28585583-28585602 None:intergenic 40.0%
TGCTTACATGACATCACCTT+AGG + chr2_4:28585753-28585772 Msa0323870:intron 40.0%
TAGAGGTAGAATGGCAAACT+TGG + chr2_4:28585853-28585872 Msa0323870:intron 40.0%
GTGCTTATCATGTTGCACAA+AGG + chr2_4:28586041-28586060 Msa0323870:CDS 40.0%
! GCCAGCTTTGATGAATCTTA+AGG + chr2_4:28586108-28586127 Msa0323870:CDS 40.0%
TTATTGTGGTGGTCTTTGAG+AGG + chr2_4:28586288-28586307 Msa0323870:three_prime_UTR 40.0%
CAACTAAGAGATGACTTCAC+AGG + chr2_4:28586484-28586503 Msa0323870:three_prime_UTR 40.0%
TGCCCTTGAGATCAATATGA+AGG - chr2_4:28586866-28586885 None:intergenic 40.0%
TCTCATGTTGCAAGTGATAG+AGG + chr2_4:28587066-28587085 Msa0323870:intron 40.0%
AGTAATCGCAAGACAAGAGA+TGG + chr2_4:28587198-28587217 Msa0323870:three_prime_UTR 40.0%
ACATGGTACAAAATGCGGTA+AGG - chr2_4:28588040-28588059 None:intergenic 40.0%
TAAGAAATTAACCTGGGAGG+GGG + chr2_4:28588202-28588221 Msa0323870:intron 40.0%
GCTTGGCATGTAATCTAAAG+AGG - chr2_4:28588365-28588384 None:intergenic 40.0%
TTAGCATAGTGGTAACTGCT+TGG - chr2_4:28588382-28588401 None:intergenic 40.0%
!!! TATGCATGTATTTTGGCAGC+TGG - chr2_4:28588499-28588518 None:intergenic 40.0%
AAGCAAATGCCTATCGTGAT+AGG + chr2_4:28588538-28588557 Msa0323870:three_prime_UTR 40.0%
AGCAAATGCCTATCGTGATA+GGG + chr2_4:28588539-28588558 Msa0323870:three_prime_UTR 40.0%
! TTAGCTTTCCCTATCACGAT+AGG - chr2_4:28588550-28588569 None:intergenic 40.0%
AACACGTGTAACAGGTACAA+AGG + chr2_4:28588685-28588704 Msa0323870:intron 40.0%
ACACGTGTAACAGGTACAAA+GGG + chr2_4:28588686-28588705 Msa0323870:intron 40.0%
! CACTCAACACCTCTTTGAAA+TGG - chr2_4:28588749-28588768 None:intergenic 40.0%
CAATGAGTTTGCAAGAGCAA+TGG + chr2_4:28588825-28588844 Msa0323870:three_prime_UTR 40.0%
! AAGGACCTGGATCCATTTTA+AGG + chr2_4:28588862-28588881 Msa0323870:three_prime_UTR 40.0%
CCTTCAATGCATAGAAACAG+CGG - chr2_4:28589173-28589192 None:intergenic 40.0%
TTGGATCGGAGCAACTTCAA+CGG + chr2_4:28583750-28583769 Msa0323870:five_prime_UTR 45.0%
TGATTCAAAATCCAGAGCGG+CGG - chr2_4:28583800-28583819 None:intergenic 45.0%
TGGAGGGATATCACAGACAA+TGG - chr2_4:28584128-28584147 None:intergenic 45.0%
CTGCAGGTCTCTGTAGAATA+TGG + chr2_4:28584259-28584278 Msa0323870:CDS 45.0%
TATGTGAAATGATGAGCCGG+AGG + chr2_4:28584284-28584303 Msa0323870:CDS 45.0%
ATGTGAAATGATGAGCCGGA+GGG + chr2_4:28584285-28584304 Msa0323870:CDS 45.0%
AGAAAAGGGAAGGGGTGAAA+AGG + chr2_4:28585238-28585257 Msa0323870:intron 45.0%
!!! TGAGTTTTGAGTTTGAGGGG+GGG - chr2_4:28585582-28585601 None:intergenic 45.0%
AGGATGAGGACATGGAACAA+TGG - chr2_4:28585700-28585719 None:intergenic 45.0%
TTAGTGTCTGTGCTTAGTGC+CGG - chr2_4:28585946-28585965 None:intergenic 45.0%
TTGGAATCTCCTGTTGGAGT+TGG + chr2_4:28586427-28586446 Msa0323870:three_prime_UTR 45.0%
ATGATGAGTTCAGCAAGCTC+TGG - chr2_4:28586822-28586841 None:intergenic 45.0%
! GTTTACAGGCTGGTCATTGA+AGG - chr2_4:28587711-28587730 None:intergenic 45.0%
GACCAGCCTGTAAACAACAT+TGG + chr2_4:28587716-28587735 Msa0323870:three_prime_UTR 45.0%
! CACCAATGTTGTTTACAGGC+TGG - chr2_4:28587721-28587740 None:intergenic 45.0%
AAAATATCATTCCCCCTCCC+AGG - chr2_4:28588216-28588235 None:intergenic 45.0%
CATTTGTAAAGTCTCCGGCA+GGG - chr2_4:28588722-28588741 None:intergenic 45.0%
ACATTTGTAAAGTCTCCGGC+AGG - chr2_4:28588723-28588742 None:intergenic 45.0%
GTTTGCAAGAGCAATGGACA+AGG + chr2_4:28588831-28588850 Msa0323870:three_prime_UTR 45.0%
CAAGGACAACAATAAGGACC+TGG + chr2_4:28588849-28588868 Msa0323870:three_prime_UTR 45.0%
!! GCCTTTTATTTGCAGGTACG+TGG + chr2_4:28589043-28589062 Msa0323870:three_prime_UTR 45.0%
GCCACGTACCTGCAAATAAA+AGG - chr2_4:28589047-28589066 None:intergenic 45.0%
!! CCGCTGTTTCTATGCATTGA+AGG + chr2_4:28589170-28589189 Msa0323870:three_prime_UTR 45.0%
!! TATTTCATTTATTTATAATA+TGG + chr2_4:28584763-28584782 Msa0323870:intron 5.0%
CTGCAGTTGTGGAAGAGAGT+TGG - chr2_4:28584245-28584264 None:intergenic 50.0%
CAACTCTCTTCCACAACTGC+AGG + chr2_4:28584243-28584262 Msa0323870:CDS 50.0%
TCTACAGAGACCTGCAGTTG+TGG - chr2_4:28584256-28584275 None:intergenic 50.0%
TTGTTATCCACTGTCCCTGC+AGG - chr2_4:28584382-28584401 None:intergenic 50.0%
GTTATCTTGGCCATGGAGCA+TGG + chr2_4:28585172-28585191 Msa0323870:intron 50.0%
CCTCGCTATGCAGAATCCTA+AGG - chr2_4:28585772-28585791 None:intergenic 50.0%
CCTTAGGATTCTGCATAGCG+AGG + chr2_4:28585769-28585788 Msa0323870:intron 50.0%
ATAGCAGGAGAGAGCTATGC+AGG + chr2_4:28586682-28586701 Msa0323870:three_prime_UTR 50.0%
CCAATCCTGCTCACTCTTCA+GGG - chr2_4:28587021-28587040 None:intergenic 50.0%
TGATGAGCCGGAGGGCAATT+AGG + chr2_4:28584293-28584312 Msa0323870:CDS 55.0%
CCTCAAGCCTAATTGCCCTC+CGG - chr2_4:28584303-28584322 None:intergenic 55.0%
GAGGGCAATTAGGCTTGAGG+TGG + chr2_4:28584303-28584322 Msa0323870:CDS 55.0%
GGAAACCCTGAAGAGTGAGC+AGG + chr2_4:28587013-28587032 Msa0323870:intron 55.0%
CCCTGAAGAGTGAGCAGGAT+TGG + chr2_4:28587018-28587037 Msa0323870:intron 55.0%
GCCAATCCTGCTCACTCTTC+AGG - chr2_4:28587022-28587041 None:intergenic 55.0%
CGCAAGACAAGAGATGGCCA+AGG + chr2_4:28587204-28587223 Msa0323870:three_prime_UTR 55.0%
TAAAGTCTCCGGCAGGGAGA+TGG - chr2_4:28588716-28588735 None:intergenic 55.0%
GGAGCAACTTCAACGGCGAC+CGG + chr2_4:28583757-28583776 Msa0323870:five_prime_UTR 60.0%
GGAAACGATTGCCGGTGCAC+CGG - chr2_4:28583779-28583798 None:intergenic 60.0%
AGAGCGGCGGAAACGATTGC+CGG - chr2_4:28583787-28583806 None:intergenic 60.0%
CCGGAGGGCAATTAGGCTTG+AGG + chr2_4:28584300-28584319 Msa0323870:CDS 60.0%
GTGAGGCCATGCTTCCTGCA+GGG + chr2_4:28584365-28584384 Msa0323870:CDS 60.0%
CACTGTCCCTGCAGGAAGCA+TGG - chr2_4:28584374-28584393 None:intergenic 60.0%
CATGCTTCCTGCAGGGACAG+TGG + chr2_4:28584372-28584391 Msa0323870:CDS 60.0%
AGGGAGTTCCATCTCCCTGC+CGG + chr2_4:28588705-28588724 Msa0323870:three_prime_UTR 60.0%
CAGGTACGTGGCAAGCGAGT+TGG + chr2_4:28589055-28589074 Msa0323870:three_prime_UTR 60.0%
TTCAACGGCGACCGGTGCAC+CGG + chr2_4:28583765-28583784 Msa0323870:five_prime_UTR 65.0%
GGCAATCGTTTCCGCCGCTC+TGG + chr2_4:28583786-28583805 Msa0323870:five_prime_UTR 65.0%
CGTGAGGCCATGCTTCCTGC+AGG + chr2_4:28584364-28584383 Msa0323870:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 28583599 28589278 28583599 ID=Msa0323870;Name=Msa0323870
chr2_4 mRNA 28583599 28589278 28583599 ID=Msa0323870-mRNA-1;Parent=Msa0323870;Name=Msa0323870-mRNA-1;_AED=0.22;_eAED=0.22;_QI=250|0.91|1|1|0.58|0.61|13|1402|146
chr2_4 exon 28583599 28583629 28583599 ID=Msa0323870-mRNA-1:exon:9783;Parent=Msa0323870-mRNA-1
chr2_4 exon 28583744 28583823 28583744 ID=Msa0323870-mRNA-1:exon:9784;Parent=Msa0323870-mRNA-1
chr2_4 exon 28583997 28584129 28583997 ID=Msa0323870-mRNA-1:exon:9785;Parent=Msa0323870-mRNA-1
chr2_4 exon 28584229 28584423 28584229 ID=Msa0323870-mRNA-1:exon:9786;Parent=Msa0323870-mRNA-1
chr2_4 exon 28585329 28585443 28585329 ID=Msa0323870-mRNA-1:exon:9787;Parent=Msa0323870-mRNA-1
chr2_4 exon 28585992 28586325 28585992 ID=Msa0323870-mRNA-1:exon:9788;Parent=Msa0323870-mRNA-1
chr2_4 exon 28586410 28586505 28586410 ID=Msa0323870-mRNA-1:exon:9789;Parent=Msa0323870-mRNA-1
chr2_4 exon 28586611 28586703 28586611 ID=Msa0323870-mRNA-1:exon:9790;Parent=Msa0323870-mRNA-1
chr2_4 exon 28586808 28586890 28586808 ID=Msa0323870-mRNA-1:exon:9791;Parent=Msa0323870-mRNA-1
chr2_4 exon 28587166 28587268 28587166 ID=Msa0323870-mRNA-1:exon:9792;Parent=Msa0323870-mRNA-1
chr2_4 exon 28587706 28587811 28587706 ID=Msa0323870-mRNA-1:exon:9793;Parent=Msa0323870-mRNA-1
chr2_4 exon 28588472 28588615 28588472 ID=Msa0323870-mRNA-1:exon:9794;Parent=Msa0323870-mRNA-1
chr2_4 exon 28588699 28589278 28588699 ID=Msa0323870-mRNA-1:exon:9795;Parent=Msa0323870-mRNA-1
chr2_4 five_prime_UTR 28583599 28583629 28583599 ID=Msa0323870-mRNA-1:five_prime_utr;Parent=Msa0323870-mRNA-1
chr2_4 five_prime_UTR 28583744 28583823 28583744 ID=Msa0323870-mRNA-1:five_prime_utr;Parent=Msa0323870-mRNA-1
chr2_4 five_prime_UTR 28583997 28584129 28583997 ID=Msa0323870-mRNA-1:five_prime_utr;Parent=Msa0323870-mRNA-1
chr2_4 five_prime_UTR 28584229 28584234 28584229 ID=Msa0323870-mRNA-1:five_prime_utr;Parent=Msa0323870-mRNA-1
chr2_4 CDS 28584235 28584423 28584235 ID=Msa0323870-mRNA-1:cds;Parent=Msa0323870-mRNA-1
chr2_4 CDS 28585329 28585443 28585329 ID=Msa0323870-mRNA-1:cds;Parent=Msa0323870-mRNA-1
chr2_4 CDS 28585992 28586128 28585992 ID=Msa0323870-mRNA-1:cds;Parent=Msa0323870-mRNA-1
chr2_4 three_prime_UTR 28586129 28586325 28586129 ID=Msa0323870-mRNA-1:three_prime_utr;Parent=Msa0323870-mRNA-1
chr2_4 three_prime_UTR 28586410 28586505 28586410 ID=Msa0323870-mRNA-1:three_prime_utr;Parent=Msa0323870-mRNA-1
chr2_4 three_prime_UTR 28586611 28586703 28586611 ID=Msa0323870-mRNA-1:three_prime_utr;Parent=Msa0323870-mRNA-1
chr2_4 three_prime_UTR 28586808 28586890 28586808 ID=Msa0323870-mRNA-1:three_prime_utr;Parent=Msa0323870-mRNA-1
chr2_4 three_prime_UTR 28587166 28587268 28587166 ID=Msa0323870-mRNA-1:three_prime_utr;Parent=Msa0323870-mRNA-1
chr2_4 three_prime_UTR 28587706 28587811 28587706 ID=Msa0323870-mRNA-1:three_prime_utr;Parent=Msa0323870-mRNA-1
chr2_4 three_prime_UTR 28588472 28588615 28588472 ID=Msa0323870-mRNA-1:three_prime_utr;Parent=Msa0323870-mRNA-1
chr2_4 three_prime_UTR 28588699 28589278 28588699 ID=Msa0323870-mRNA-1:three_prime_utr;Parent=Msa0323870-mRNA-1
Gene Sequence

>Msa0323870

ATGTTCTCCAACTCTCTTCCACAACTGCAGGTCTCTGTAGAATATGGGTTATGTGAAATGATGAGCCGGAGGGCAATTAGGCTTGAGGTGGCTCCTAAAGATGAAAATTGGGGTTTCAACATATCAGAGCGTGAGGCCATGCTTCCTGCAGGGACAGTGGATAACAATGTAGAAAGGGTCTATAAAGAGGTATACCATATTTGCCACTCATATGGAGAATATAGCGGAATTAGCAACAATCTATCCCAATGTGAAAATTCTCCACTTTCATGTCGAATTAAAAAACAACCATTTGGAGTTCAAGGAAAAGAAAAGGATGGATGTCAACTGCTTGCAGAATCACTCGATACAGAGTGCTTATCATGTTGCACAAAGGTTGTTATGCCTGAAATATTCCAATCAAGTCGAGAATACGATTCGGCCAGCTTTGATGAATCTTAA
Protein sequence

>Msa0323870

MFSNSLPQLQVSVEYGLCEMMSRRAIRLEVAPKDENWGFNISEREAMLPAGTVDNNVERVYKEVYHICHSYGEYSGISNNLSQCENSPLSCRIKKQPFGVQGKEKDGCQLLAESLDTECLSCCTKVVMPEIFQSSREYDSASFDES*