Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397610 | PNY14955.1 | 91.954 | 87 | 7 | 0 | 6 | 92 | 41 | 127 | 9.16e-49 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397610 | sp|Q9SFU0|SC24A_ARATH | 75.294 | 85 | 21 | 0 | 6 | 90 | 604 | 688 | 3.88e-41 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397610 | A0A2K3PI82 | 91.954 | 87 | 7 | 0 | 6 | 92 | 41 | 127 | 4.37e-49 | 171 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1397610 | 0.811557 | 6.596673e-51 | -8.615850e-47 |
| Msa0036920 | Msa1397610 | 0.800254 | 1.571337e-48 | -8.615850e-47 |
| Msa0045770 | Msa1397610 | 0.803249 | 3.814782e-49 | -8.615850e-47 |
| Msa0112750 | Msa1397610 | 0.814534 | 1.466959e-51 | -8.615850e-47 |
| Msa0117710 | Msa1397610 | 0.813718 | 2.221104e-51 | -8.615850e-47 |
| Msa1353470 | Msa1397610 | 0.811683 | 6.192816e-51 | -8.615850e-47 |
| Msa1385000 | Msa1397610 | 0.811429 | 7.031539e-51 | -8.615850e-47 |
| Msa1392260 | Msa1397610 | 0.812962 | 3.255833e-51 | -8.615850e-47 |
| Msa1397610 | Msa1397860 | 0.803002 | 4.290593e-49 | -8.615850e-47 |
| Msa1397610 | Msa1403480 | 0.803380 | 3.583036e-49 | -8.615850e-47 |
| Msa1397610 | Msa1411020 | 0.834783 | 2.454997e-56 | -8.615850e-47 |
| Msa1397610 | Msa1420140 | 0.825110 | 5.603387e-54 | -8.615850e-47 |
| Msa1397610 | Msa1420490 | 0.830755 | 2.456279e-55 | -8.615850e-47 |
| Msa1397610 | Msa1423390 | 0.830382 | 3.031303e-55 | -8.615850e-47 |
| Msa1397610 | Msa1424290 | 0.836646 | 8.281736e-57 | -8.615850e-47 |
| Msa1397610 | Msa1425100 | 0.811105 | 8.269620e-51 | -8.615850e-47 |
| Msa1397610 | Msa1429900 | 0.806878 | 6.642305e-50 | -8.615850e-47 |
| Msa1397610 | Msa1434350 | 0.837155 | 6.141662e-57 | -8.615850e-47 |
| Msa1397610 | Msa1438250 | 0.807375 | 5.212383e-50 | -8.615850e-47 |
| Msa1397610 | Msa1439320 | 0.835693 | 1.446077e-56 | -8.615850e-47 |
| Msa1397610 | Msa1440370 | 0.830301 | 3.172070e-55 | -8.615850e-47 |
| Msa1397610 | Msa1440810 | 0.827840 | 1.252622e-54 | -8.615850e-47 |
| Msa0627410 | Msa1397610 | 0.848672 | 5.278267e-60 | -8.615850e-47 |
| Msa0635610 | Msa1397610 | 0.802390 | 5.740469e-49 | -8.615850e-47 |
| Msa0637070 | Msa1397610 | 0.804676 | 1.926728e-49 | -8.615850e-47 |
| Msa0657970 | Msa1397610 | 0.833163 | 6.243179e-56 | -8.615850e-47 |
| Msa0661870 | Msa1397610 | 0.825635 | 4.210969e-54 | -8.615850e-47 |
| Msa0663240 | Msa1397610 | 0.802287 | 6.027526e-49 | -8.615850e-47 |
| Msa0688480 | Msa1397610 | 0.808138 | 3.587765e-50 | -8.615850e-47 |
| Msa0693380 | Msa1397610 | 0.803904 | 2.790696e-49 | -8.615850e-47 |
| Msa0697060 | Msa1397610 | 0.840064 | 1.088545e-57 | -8.615850e-47 |
| Msa0741570 | Msa1397610 | 0.838123 | 3.466547e-57 | -8.615850e-47 |
| Msa0762360 | Msa1397610 | 0.830210 | 3.339165e-55 | -8.615850e-47 |
| Msa0766630 | Msa1397610 | 0.820498 | 6.643300e-53 | -8.615850e-47 |
| Msa0777790 | Msa1397610 | 0.805208 | 1.491638e-49 | -8.615850e-47 |
| Msa0789250 | Msa1397610 | 0.800009 | 1.761847e-48 | -8.615850e-47 |
| Msa0793640 | Msa1397610 | 0.809489 | 1.844668e-50 | -8.615850e-47 |
| Msa0822650 | Msa1397610 | 0.847666 | 1.001160e-59 | -8.615850e-47 |
| Msa0825340 | Msa1397610 | 0.805294 | 1.430752e-49 | -8.615850e-47 |
| Msa0142220 | Msa1397610 | 0.823873 | 1.095621e-53 | -8.615850e-47 |
| Msa0157290 | Msa1397610 | 0.811663 | 6.255041e-51 | -8.615850e-47 |
| Msa0166870 | Msa1397610 | 0.810763 | 9.803217e-51 | -8.615850e-47 |
| Msa0188830 | Msa1397610 | 0.810263 | 1.257343e-50 | -8.615850e-47 |
| Msa0203500 | Msa1397610 | 0.818958 | 1.494087e-52 | -8.615850e-47 |
| Msa0231000 | Msa1397610 | 0.808620 | 2.832478e-50 | -8.615850e-47 |
| Msa0233300 | Msa1397610 | 0.806721 | 7.168697e-50 | -8.615850e-47 |
| Msa1249490 | Msa1397610 | 0.805757 | 1.144252e-49 | -8.615850e-47 |
| Msa1284680 | Msa1397610 | 0.814569 | 1.441423e-51 | -8.615850e-47 |
| Msa1297210 | Msa1397610 | 0.800589 | 1.342326e-48 | -8.615850e-47 |
| Msa1297290 | Msa1397610 | 0.810677 | 1.023284e-50 | -8.615850e-47 |
| Msa1307980 | Msa1397610 | 0.802666 | 5.034099e-49 | -8.615850e-47 |
| Msa1329700 | Msa1397610 | 0.812168 | 4.855267e-51 | -8.615850e-47 |
| Msa0399300 | Msa1397610 | 0.843840 | 1.093922e-58 | -8.615850e-47 |
| Msa0402290 | Msa1397610 | 0.815167 | 1.062088e-51 | -8.615850e-47 |
| Msa0414230 | Msa1397610 | 0.808741 | 2.667741e-50 | -8.615850e-47 |
| Msa0431500 | Msa1397610 | 0.834329 | 3.192021e-56 | -8.615850e-47 |
| Msa0431690 | Msa1397610 | 0.810375 | 1.189125e-50 | -8.615850e-47 |
| Msa0432290 | Msa1397610 | 0.804731 | 1.876901e-49 | -8.615850e-47 |
| Msa0452620 | Msa1397610 | 0.807352 | 5.272222e-50 | -8.615850e-47 |
| Msa0456200 | Msa1397610 | 0.848519 | 5.820430e-60 | -8.615850e-47 |
| Msa0990350 | Msa1397610 | 0.815616 | 8.439681e-52 | -8.615850e-47 |
| Msa1014540 | Msa1397610 | 0.801152 | 1.030261e-48 | -8.615850e-47 |
| Msa1015790 | Msa1397610 | 0.802893 | 4.520195e-49 | -8.615850e-47 |
| Msa1035310 | Msa1397610 | 0.805767 | 1.138681e-49 | -8.615850e-47 |
| Msa1071110 | Msa1397610 | 0.800958 | 1.128718e-48 | -8.615850e-47 |
| Msa1081330 | Msa1397610 | 0.803210 | 3.887226e-49 | -8.615850e-47 |
| Msa1081590 | Msa1397610 | 0.807692 | 4.465469e-50 | -8.615850e-47 |
| Msa1082500 | Msa1397610 | 0.837476 | 5.082654e-57 | -8.615850e-47 |
| Msa1084240 | Msa1397610 | 0.801515 | 8.684403e-49 | -8.615850e-47 |
| Msa0258760 | Msa1397610 | 0.802809 | 4.703643e-49 | -8.615850e-47 |
| Msa0262510 | Msa1397610 | 0.801702 | 7.949718e-49 | -8.615850e-47 |
| Msa0270520 | Msa1397610 | 0.807283 | 5.451306e-50 | -8.615850e-47 |
| Msa0273100 | Msa1397610 | 0.808916 | 2.448434e-50 | -8.615850e-47 |
| Msa0273660 | Msa1397610 | 0.802113 | 6.544874e-49 | -8.615850e-47 |
| Msa0285030 | Msa1397610 | 0.802604 | 5.184731e-49 | -8.615850e-47 |
| Msa0309020 | Msa1397610 | 0.808493 | 3.014468e-50 | -8.615850e-47 |
| Msa0313760 | Msa1397610 | 0.800343 | 1.506788e-48 | -8.615850e-47 |
| Msa0321080 | Msa1397610 | 0.800293 | 1.542410e-48 | -8.615850e-47 |
| Msa0324150 | Msa1397610 | 0.821859 | 3.226173e-53 | -8.615850e-47 |
| Msa0326200 | Msa1397610 | 0.851795 | 7.029853e-61 | -8.615850e-47 |
| Msa0353190 | Msa1397610 | 0.866062 | 3.750369e-65 | -8.615850e-47 |
| Msa0353690 | Msa1397610 | 0.820182 | 7.851942e-53 | -8.615850e-47 |
| Msa0355220 | Msa1397610 | 0.800261 | 1.565669e-48 | -8.615850e-47 |
| Msa0363300 | Msa1397610 | 0.808981 | 2.370397e-50 | -8.615850e-47 |
| Msa0363360 | Msa1397610 | 0.815441 | 9.232292e-52 | -8.615850e-47 |
| Msa1116440 | Msa1397610 | 0.805978 | 1.028000e-49 | -8.615850e-47 |
| Msa1136090 | Msa1397610 | 0.819336 | 1.225321e-52 | -8.615850e-47 |
| Msa1137690 | Msa1397610 | 0.830698 | 2.536515e-55 | -8.615850e-47 |
| Msa1160670 | Msa1397610 | 0.849736 | 2.670379e-60 | -8.615850e-47 |
| Msa1160690 | Msa1397610 | 0.810330 | 1.216008e-50 | -8.615850e-47 |
| Msa1172670 | Msa1397610 | 0.808265 | 3.372360e-50 | -8.615850e-47 |
| Msa1178720 | Msa1397610 | 0.810703 | 1.010107e-50 | -8.615850e-47 |
| Msa1186060 | Msa1397610 | 0.800235 | 1.585306e-48 | -8.615850e-47 |
| Msa1187940 | Msa1397610 | 0.802115 | 6.537612e-49 | -8.615850e-47 |
| Msa1187950 | Msa1397610 | 0.805667 | 1.195372e-49 | -8.615850e-47 |
| Msa1192990 | Msa1397610 | 0.802694 | 4.967175e-49 | -8.615850e-47 |
| Msa0484780 | Msa1397610 | 0.836174 | 1.092361e-56 | -8.615850e-47 |
| Msa0502270 | Msa1397610 | 0.800251 | 1.572919e-48 | -8.615850e-47 |
| Msa0512900 | Msa1397610 | 0.843465 | 1.377845e-58 | -8.615850e-47 |
| Msa0532350 | Msa1397610 | 0.827415 | 1.584508e-54 | -8.615850e-47 |
| Msa0545210 | Msa1397610 | 0.803826 | 2.895966e-49 | -8.615850e-47 |
| Msa0880140 | Msa1397610 | 0.808706 | 2.714618e-50 | -8.615850e-47 |
| Msa0885280 | Msa1397610 | 0.837192 | 6.008697e-57 | -8.615850e-47 |
| Msa0885290 | Msa1397610 | 0.859047 | 5.417777e-63 | -8.615850e-47 |
| Msa0887020 | Msa1397610 | 0.800301 | 1.536560e-48 | -8.615850e-47 |
| Msa0887990 | Msa1397610 | 0.885663 | 6.695429e-72 | -8.615850e-47 |
| Msa0895950 | Msa1397610 | 0.809187 | 2.141967e-50 | -8.615850e-47 |
| Msa0898380 | Msa1397610 | 0.804162 | 2.466174e-49 | -8.615850e-47 |
| Msa0907070 | Msa1397610 | 0.804015 | 2.645939e-49 | -8.615850e-47 |
| Msa0909120 | Msa1397610 | 0.809608 | 1.739459e-50 | -8.615850e-47 |
| Msa0922720 | Msa1397610 | 0.818789 | 1.631490e-52 | -8.615850e-47 |
| Msa0927290 | Msa1397610 | 0.818085 | 2.356516e-52 | -8.615850e-47 |
| Msa0935910 | Msa1397610 | 0.811097 | 8.302299e-51 | -8.615850e-47 |
| Msa0954130 | Msa1397610 | 0.806970 | 6.350461e-50 | -8.615850e-47 |
| Msa0954550 | Msa1397610 | 0.813431 | 2.568535e-51 | -8.615850e-47 |
| Msa0954810 | Msa1397610 | 0.808162 | 3.547145e-50 | -8.615850e-47 |
| Msa0954920 | Msa1397610 | 0.850722 | 1.412897e-60 | -8.615850e-47 |
| Msa0965750 | Msa1397610 | 0.805940 | 1.047434e-49 | -8.615850e-47 |
| Msa0969450 | Msa1397610 | 0.827681 | 1.368154e-54 | -8.615850e-47 |
| Msa0969520 | Msa1397610 | 0.808859 | 2.517542e-50 | -8.615850e-47 |
| Msa0975220 | Msa1397610 | 0.816705 | 4.819367e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397610 | MtrunA17_Chr7g0271481 | 92.941 | 85 | 6 | 0 | 6 | 90 | 586 | 670 | 3.30e-52 | 175 |
| Msa1397610 | MtrunA17_Chr1g0210851 | 36.585 | 82 | 52 | 0 | 9 | 90 | 686 | 767 | 4.56e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1397610 | AT3G07100.1 | 75.294 | 85 | 21 | 0 | 6 | 90 | 604 | 688 | 3.94e-42 | 146 |
| Msa1397610 | AT4G32640.2 | 34.146 | 82 | 54 | 0 | 9 | 90 | 669 | 750 | 4.88e-12 | 60.8 |
| Msa1397610 | AT4G32640.1 | 34.146 | 82 | 54 | 0 | 9 | 90 | 669 | 750 | 4.88e-12 | 60.8 |
| Msa1397610 | AT3G44340.5 | 35.366 | 82 | 53 | 0 | 9 | 90 | 672 | 753 | 5.02e-12 | 60.8 |
| Msa1397610 | AT3G44340.2 | 35.366 | 82 | 53 | 0 | 9 | 90 | 672 | 753 | 5.02e-12 | 60.8 |
| Msa1397610 | AT3G44340.1 | 35.366 | 82 | 53 | 0 | 9 | 90 | 672 | 753 | 5.02e-12 | 60.8 |
| Msa1397610 | AT3G44340.4 | 35.366 | 82 | 53 | 0 | 9 | 90 | 672 | 753 | 5.02e-12 | 60.8 |
| Msa1397610 | AT3G44340.3 | 35.366 | 82 | 53 | 0 | 9 | 90 | 672 | 753 | 5.02e-12 | 60.8 |
Find 19 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCATAAAATGGATCTTC+AGG | 0.293277 | tig0022168:+43914 | None:intergenic |
| AGAAATTGAGTCATGAATTA+AGG | 0.308061 | tig0022168:-43387 | Msa1397610:CDS |
| CATACACATTTACTGAGATT+TGG | 0.310882 | tig0022168:+43867 | None:intergenic |
| GCAGCCATCTGCTCATAAAA+TGG | 0.311495 | tig0022168:+43905 | None:intergenic |
| ATTTACTGAGATTTGGTACT+TGG | 0.355044 | tig0022168:+43874 | None:intergenic |
| TCCTGTCTGTGTAGGAACTC+TGG | 0.429146 | tig0022168:-43470 | Msa1397610:intron |
| TCTCCCCATGAGTAGCTGAT+TGG | 0.442822 | tig0022168:+43407 | None:intergenic |
| TGAGTAGCTGATTGGAAAGC+TGG | 0.469035 | tig0022168:+43415 | None:intergenic |
| GAGAGACTGCATGGGAAGCA+TGG | 0.524555 | tig0022168:-43351 | Msa1397610:CDS |
| GCTTTCCAATCAGCTACTCA+TGG | 0.528786 | tig0022168:-43412 | Msa1397610:CDS |
| TACACTGACATAGCCTCCTT+AGG | 0.536987 | tig0022168:-43830 | Msa1397610:intron |
| CTTTCCAATCAGCTACTCAT+GGG | 0.542155 | tig0022168:-43411 | Msa1397610:CDS |
| GGAAAATAAAACACCTAAGG+AGG | 0.554451 | tig0022168:+43817 | None:intergenic |
| ACCTCACAAGAGAGACTGCA+TGG | 0.560035 | tig0022168:-43360 | Msa1397610:CDS |
| ACTCTGGCAAAGTACACTGC+TGG | 0.591069 | tig0022168:-43454 | Msa1397610:CDS |
| CCCATGCAGTCTCTCTTGTG+AGG | 0.598716 | tig0022168:+43359 | None:intergenic |
| TTTGGGACAGATAAAGAACA+TGG | 0.635621 | tig0022168:-43947 | Msa1397610:intron |
| TTTCCAATCAGCTACTCATG+GGG | 0.686768 | tig0022168:-43410 | Msa1397610:CDS |
| CCTCACAAGAGAGACTGCAT+GGG | 0.693489 | tig0022168:-43359 | Msa1397610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTTGTATTAAGTTATATT+TGG | - | tig0022168:43390-43409 | Msa1397610:CDS | 15.0% |
| !!! | ATTTGGTAATTAGTTATATT+TGG | - | tig0022168:43407-43426 | Msa1397610:CDS | 15.0% |
| !! | TGTTTGTATTAAGTTATATT+TGG | - | tig0022168:43390-43409 | Msa1397610:CDS | 15.0% |
| !!! | ATTTGGTAATTAGTTATATT+TGG | - | tig0022168:43407-43426 | Msa1397610:CDS | 15.0% |
| !! | CGTAAATGTATATGTTTAAT+AGG | - | tig0022168:43506-43525 | Msa1397610:intron | 20.0% |
| !!! | ATATTTTTGTTGTATTAGTG+TGG | - | tig0022168:43714-43733 | Msa1397610:intron | 20.0% |
| !! | TAACAGGTTTAAAAATAGAA+TGG | + | tig0022168:44104-44123 | None:intergenic | 20.0% |
| !! | CGTAAATGTATATGTTTAAT+AGG | - | tig0022168:43506-43525 | Msa1397610:intron | 20.0% |
| !!! | ATATTTTTGTTGTATTAGTG+TGG | - | tig0022168:43714-43733 | Msa1397610:intron | 20.0% |
| !! | TAACAGGTTTAAAAATAGAA+TGG | + | tig0022168:44104-44123 | None:intergenic | 20.0% |
| ! | TTGACTTTAATAAGATGCTT+TGG | - | tig0022168:43354-43373 | Msa1397610:CDS | 25.0% |
| ! | ATGGTTTATATACAAAAAGG+AGG | + | tig0022168:43580-43599 | None:intergenic | 25.0% |
| ! | GTCATGGTTTATATACAAAA+AGG | + | tig0022168:43583-43602 | None:intergenic | 25.0% |
| !! | TGTCTATCTATTTCTCAAAT+AGG | + | tig0022168:43605-43624 | None:intergenic | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | tig0022168:43691-43710 | Msa1397610:intron | 25.0% |
| ! | GTGATAAAATTGATATGCAA+TGG | + | tig0022168:43769-43788 | None:intergenic | 25.0% |
| ! | ATGTTCTGATATTTGTGTAA+TGG | - | tig0022168:43815-43834 | Msa1397610:intron | 25.0% |
| ! | AATTTCAACACACAAAAAGA+TGG | + | tig0022168:43883-43902 | None:intergenic | 25.0% |
| !!! | AGTGTATTAGTGTATTGATT+TGG | - | tig0022168:43905-43924 | Msa1397610:CDS | 25.0% |
| !!! | GTGTATTAGTGTATTGATTT+GGG | - | tig0022168:43906-43925 | Msa1397610:CDS | 25.0% |
| ! | ACGAAATACATAGAAATTGA+AGG | + | tig0022168:44077-44096 | None:intergenic | 25.0% |
| ! | ATCAATTAATCAAGAGTAAC+AGG | + | tig0022168:44120-44139 | None:intergenic | 25.0% |
| !! | ATTTGATGATTCTTTAGTTG+TGG | - | tig0022168:44142-44161 | Msa1397610:intron | 25.0% |
| ! | ACTTAATGACATGAGTTTAT+GGG | - | tig0022168:44180-44199 | Msa1397610:intron | 25.0% |
| ! | TAAACTGATACTTTAACTCA+TGG | - | tig0022168:44223-44242 | Msa1397610:intron | 25.0% |
| ! | AGAAATTGAGTCATGAATTA+AGG | - | tig0022168:44483-44502 | Msa1397610:intron | 25.0% |
| ! | TTGACTTTAATAAGATGCTT+TGG | - | tig0022168:43354-43373 | Msa1397610:CDS | 25.0% |
| ! | ATGGTTTATATACAAAAAGG+AGG | + | tig0022168:43580-43599 | None:intergenic | 25.0% |
| ! | GTCATGGTTTATATACAAAA+AGG | + | tig0022168:43583-43602 | None:intergenic | 25.0% |
| !! | TGTCTATCTATTTCTCAAAT+AGG | + | tig0022168:43605-43624 | None:intergenic | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | tig0022168:43691-43710 | Msa1397610:intron | 25.0% |
| ! | GTGATAAAATTGATATGCAA+TGG | + | tig0022168:43769-43788 | None:intergenic | 25.0% |
| ! | ATGTTCTGATATTTGTGTAA+TGG | - | tig0022168:43815-43834 | Msa1397610:intron | 25.0% |
| ! | AATTTCAACACACAAAAAGA+TGG | + | tig0022168:43883-43902 | None:intergenic | 25.0% |
| !!! | AGTGTATTAGTGTATTGATT+TGG | - | tig0022168:43905-43924 | Msa1397610:CDS | 25.0% |
| !!! | GTGTATTAGTGTATTGATTT+GGG | - | tig0022168:43906-43925 | Msa1397610:CDS | 25.0% |
| ! | ACGAAATACATAGAAATTGA+AGG | + | tig0022168:44077-44096 | None:intergenic | 25.0% |
| ! | ATCAATTAATCAAGAGTAAC+AGG | + | tig0022168:44120-44139 | None:intergenic | 25.0% |
| !! | ATTTGATGATTCTTTAGTTG+TGG | - | tig0022168:44142-44161 | Msa1397610:intron | 25.0% |
| ! | ACTTAATGACATGAGTTTAT+GGG | - | tig0022168:44180-44199 | Msa1397610:intron | 25.0% |
| ! | TAAACTGATACTTTAACTCA+TGG | - | tig0022168:44223-44242 | Msa1397610:intron | 25.0% |
| ! | AGAAATTGAGTCATGAATTA+AGG | - | tig0022168:44483-44502 | Msa1397610:intron | 25.0% |
| !! | TGATCTGCATATTAATTTGC+AGG | + | tig0022168:43440-43459 | None:intergenic | 30.0% |
| TGCAAATTAATATGCAGATC+AGG | - | tig0022168:43439-43458 | Msa1397610:CDS | 30.0% | |
| ACTTAGTGCTGTATATGATT+AGG | - | tig0022168:43483-43502 | Msa1397610:intron | 30.0% | |
| ! | TCTATTTCTCAAATAGGTCA+TGG | + | tig0022168:43599-43618 | None:intergenic | 30.0% |
| AAAATTGATATGCAATGGCA+AGG | + | tig0022168:43764-43783 | None:intergenic | 30.0% | |
| !! | GATATTTGTGTAATGGATAG+AGG | - | tig0022168:43822-43841 | Msa1397610:intron | 30.0% |
| ! | ATTTACTGAGATTTGGTACT+TGG | + | tig0022168:43999-44018 | None:intergenic | 30.0% |
| CATACACATTTACTGAGATT+TGG | + | tig0022168:44006-44025 | None:intergenic | 30.0% | |
| GAAGGAAAATAAAACACCTA+AGG | + | tig0022168:44059-44078 | None:intergenic | 30.0% | |
| GACTTAATGACATGAGTTTA+TGG | - | tig0022168:44179-44198 | Msa1397610:intron | 30.0% | |
| !! | TGATCTGCATATTAATTTGC+AGG | + | tig0022168:43440-43459 | None:intergenic | 30.0% |
| TGCAAATTAATATGCAGATC+AGG | - | tig0022168:43439-43458 | Msa1397610:CDS | 30.0% | |
| ACTTAGTGCTGTATATGATT+AGG | - | tig0022168:43483-43502 | Msa1397610:intron | 30.0% | |
| ! | TCTATTTCTCAAATAGGTCA+TGG | + | tig0022168:43599-43618 | None:intergenic | 30.0% |
| AAAATTGATATGCAATGGCA+AGG | + | tig0022168:43764-43783 | None:intergenic | 30.0% | |
| !! | GATATTTGTGTAATGGATAG+AGG | - | tig0022168:43822-43841 | Msa1397610:intron | 30.0% |
| ! | ATTTACTGAGATTTGGTACT+TGG | + | tig0022168:43999-44018 | None:intergenic | 30.0% |
| CATACACATTTACTGAGATT+TGG | + | tig0022168:44006-44025 | None:intergenic | 30.0% | |
| GAAGGAAAATAAAACACCTA+AGG | + | tig0022168:44059-44078 | None:intergenic | 30.0% | |
| GACTTAATGACATGAGTTTA+TGG | - | tig0022168:44179-44198 | Msa1397610:intron | 30.0% | |
| ! | ATAATTCTAGGAGCTAACAG+AGG | - | tig0022168:43554-43573 | Msa1397610:intron | 35.0% |
| ! | TTTGGGACAGATAAAGAACA+TGG | - | tig0022168:43923-43942 | Msa1397610:CDS | 35.0% |
| TGCTCATAAAATGGATCTTC+AGG | + | tig0022168:43959-43978 | None:intergenic | 35.0% | |
| ! | AGATCCATTTTATGAGCAGA+TGG | - | tig0022168:43961-43980 | Msa1397610:intron | 35.0% |
| GGAAAATAAAACACCTAAGG+AGG | + | tig0022168:44056-44075 | None:intergenic | 35.0% | |
| AAATGCTGACAGAATTACAC+CGG | + | tig0022168:44314-44333 | None:intergenic | 35.0% | |
| TGTAATTCTGTCAGCATTTG+CGG | - | tig0022168:44315-44334 | Msa1397610:intron | 35.0% | |
| !!! | GTTTTTTTTCCTGTCTGTGT+AGG | - | tig0022168:44392-44411 | Msa1397610:intron | 35.0% |
| ! | ATAATTCTAGGAGCTAACAG+AGG | - | tig0022168:43554-43573 | Msa1397610:intron | 35.0% |
| ! | TTTGGGACAGATAAAGAACA+TGG | - | tig0022168:43923-43942 | Msa1397610:CDS | 35.0% |
| TGCTCATAAAATGGATCTTC+AGG | + | tig0022168:43959-43978 | None:intergenic | 35.0% | |
| ! | AGATCCATTTTATGAGCAGA+TGG | - | tig0022168:43961-43980 | Msa1397610:intron | 35.0% |
| GGAAAATAAAACACCTAAGG+AGG | + | tig0022168:44056-44075 | None:intergenic | 35.0% | |
| AAATGCTGACAGAATTACAC+CGG | + | tig0022168:44314-44333 | None:intergenic | 35.0% | |
| TGTAATTCTGTCAGCATTTG+CGG | - | tig0022168:44315-44334 | Msa1397610:intron | 35.0% | |
| !!! | GTTTTTTTTCCTGTCTGTGT+AGG | - | tig0022168:44392-44411 | Msa1397610:intron | 35.0% |
| ! | ACTGTCAGAGGCATAATTCT+AGG | - | tig0022168:43542-43561 | Msa1397610:intron | 40.0% |
| !! | TAATGGATAGAGGCATTGAG+TGG | - | tig0022168:43832-43851 | Msa1397610:CDS | 40.0% |
| AATGCTGACAGAATTACACC+GGG | + | tig0022168:44313-44332 | None:intergenic | 40.0% | |
| CATCAGCACACAAGACTATA+TGG | + | tig0022168:44349-44368 | None:intergenic | 40.0% | |
| CTTTCCAATCAGCTACTCAT+GGG | - | tig0022168:44459-44478 | Msa1397610:intron | 40.0% | |
| TTTCCAATCAGCTACTCATG+GGG | - | tig0022168:44460-44479 | Msa1397610:intron | 40.0% | |
| ! | ACTGTCAGAGGCATAATTCT+AGG | - | tig0022168:43542-43561 | Msa1397610:intron | 40.0% |
| !! | TAATGGATAGAGGCATTGAG+TGG | - | tig0022168:43832-43851 | Msa1397610:CDS | 40.0% |
| AATGCTGACAGAATTACACC+GGG | + | tig0022168:44313-44332 | None:intergenic | 40.0% | |
| CATCAGCACACAAGACTATA+TGG | + | tig0022168:44349-44368 | None:intergenic | 40.0% | |
| CTTTCCAATCAGCTACTCAT+GGG | - | tig0022168:44459-44478 | Msa1397610:intron | 40.0% | |
| TTTCCAATCAGCTACTCATG+GGG | - | tig0022168:44460-44479 | Msa1397610:intron | 40.0% | |
| TCACATGTTGCAACTGTCAG+AGG | - | tig0022168:43530-43549 | Msa1397610:intron | 45.0% | |
| ! | CATTGAGTGGTGGAATTGGT+TGG | - | tig0022168:43845-43864 | Msa1397610:CDS | 45.0% |
| GCAGCCATCTGCTCATAAAA+TGG | + | tig0022168:43968-43987 | None:intergenic | 45.0% | |
| TACACTGACATAGCCTCCTT+AGG | - | tig0022168:44040-44059 | Msa1397610:intron | 45.0% | |
| ATCAATGTATCCCTGTGTCC+CGG | - | tig0022168:44292-44311 | Msa1397610:intron | 45.0% | |
| TGAGTAGCTGATTGGAAAGC+TGG | + | tig0022168:44458-44477 | None:intergenic | 45.0% | |
| GCTTTCCAATCAGCTACTCA+TGG | - | tig0022168:44458-44477 | Msa1397610:intron | 45.0% | |
| TCACATGTTGCAACTGTCAG+AGG | - | tig0022168:43530-43549 | Msa1397610:intron | 45.0% | |
| ! | CATTGAGTGGTGGAATTGGT+TGG | - | tig0022168:43845-43864 | Msa1397610:CDS | 45.0% |
| GCAGCCATCTGCTCATAAAA+TGG | + | tig0022168:43968-43987 | None:intergenic | 45.0% | |
| TACACTGACATAGCCTCCTT+AGG | - | tig0022168:44040-44059 | Msa1397610:intron | 45.0% | |
| ATCAATGTATCCCTGTGTCC+CGG | - | tig0022168:44292-44311 | Msa1397610:intron | 45.0% | |
| TGAGTAGCTGATTGGAAAGC+TGG | + | tig0022168:44458-44477 | None:intergenic | 45.0% | |
| GCTTTCCAATCAGCTACTCA+TGG | - | tig0022168:44458-44477 | Msa1397610:intron | 45.0% | |
| CAAGGCTTGTGCTCTGTCTT+GGG | + | tig0022168:43746-43765 | None:intergenic | 50.0% | |
| !! | TGGATAGAGGCATTGAGTGG+TGG | - | tig0022168:43835-43854 | Msa1397610:CDS | 50.0% |
| !! | GAGGCATTGAGTGGTGGAAT+TGG | - | tig0022168:43841-43860 | Msa1397610:CDS | 50.0% |
| CAGAATTACACCGGGACACA+GGG | + | tig0022168:44305-44324 | None:intergenic | 50.0% | |
| ACAGAATTACACCGGGACAC+AGG | + | tig0022168:44306-44325 | None:intergenic | 50.0% | |
| TCCTGTCTGTGTAGGAACTC+TGG | - | tig0022168:44400-44419 | Msa1397610:intron | 50.0% | |
| ACTCTGGCAAAGTACACTGC+TGG | - | tig0022168:44416-44435 | Msa1397610:intron | 50.0% | |
| TCTCCCCATGAGTAGCTGAT+TGG | + | tig0022168:44466-44485 | None:intergenic | 50.0% | |
| ACCTCACAAGAGAGACTGCA+TGG | - | tig0022168:44510-44529 | Msa1397610:intron | 50.0% | |
| CCTCACAAGAGAGACTGCAT+GGG | - | tig0022168:44511-44530 | Msa1397610:intron | 50.0% | |
| CAAGGCTTGTGCTCTGTCTT+GGG | + | tig0022168:43746-43765 | None:intergenic | 50.0% | |
| !! | TGGATAGAGGCATTGAGTGG+TGG | - | tig0022168:43835-43854 | Msa1397610:CDS | 50.0% |
| !! | GAGGCATTGAGTGGTGGAAT+TGG | - | tig0022168:43841-43860 | Msa1397610:CDS | 50.0% |
| CAGAATTACACCGGGACACA+GGG | + | tig0022168:44305-44324 | None:intergenic | 50.0% | |
| ACAGAATTACACCGGGACAC+AGG | + | tig0022168:44306-44325 | None:intergenic | 50.0% | |
| TCCTGTCTGTGTAGGAACTC+TGG | - | tig0022168:44400-44419 | Msa1397610:intron | 50.0% | |
| ACTCTGGCAAAGTACACTGC+TGG | - | tig0022168:44416-44435 | Msa1397610:intron | 50.0% | |
| TCTCCCCATGAGTAGCTGAT+TGG | + | tig0022168:44466-44485 | None:intergenic | 50.0% | |
| ACCTCACAAGAGAGACTGCA+TGG | - | tig0022168:44510-44529 | Msa1397610:intron | 50.0% | |
| CCTCACAAGAGAGACTGCAT+GGG | - | tig0022168:44511-44530 | Msa1397610:intron | 50.0% | |
| GCAAGGCTTGTGCTCTGTCT+TGG | + | tig0022168:43747-43766 | None:intergenic | 55.0% | |
| GCCAGAGTTCCTACACAGAC+AGG | + | tig0022168:44404-44423 | None:intergenic | 55.0% | |
| CCCATGCAGTCTCTCTTGTG+AGG | + | tig0022168:44514-44533 | None:intergenic | 55.0% | |
| GAGAGACTGCATGGGAAGCA+TGG | - | tig0022168:44519-44538 | Msa1397610:intron | 55.0% | |
| GCAAGGCTTGTGCTCTGTCT+TGG | + | tig0022168:43747-43766 | None:intergenic | 55.0% | |
| GCCAGAGTTCCTACACAGAC+AGG | + | tig0022168:44404-44423 | None:intergenic | 55.0% | |
| CCCATGCAGTCTCTCTTGTG+AGG | + | tig0022168:44514-44533 | None:intergenic | 55.0% | |
| GAGAGACTGCATGGGAAGCA+TGG | - | tig0022168:44519-44538 | Msa1397610:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022168 | gene | 43318 | 44574 | 43318 | ID=Msa1397610;Name=Msa1397610 |
| tig0022168 | mRNA | 43318 | 44574 | 43318 | ID=Msa1397610-mRNA-1;Parent=Msa1397610;Name=Msa1397610-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.5|1|1|4|0|101 |
| tig0022168 | exon | 44566 | 44574 | 44566 | ID=Msa1397610-mRNA-1:exon:16192;Parent=Msa1397610-mRNA-1 |
| tig0022168 | exon | 43979 | 43985 | 43979 | ID=Msa1397610-mRNA-1:exon:16191;Parent=Msa1397610-mRNA-1 |
| tig0022168 | exon | 43831 | 43959 | 43831 | ID=Msa1397610-mRNA-1:exon:16190;Parent=Msa1397610-mRNA-1 |
| tig0022168 | exon | 43318 | 43478 | 43318 | ID=Msa1397610-mRNA-1:exon:16189;Parent=Msa1397610-mRNA-1 |
| tig0022168 | CDS | 44566 | 44574 | 44566 | ID=Msa1397610-mRNA-1:cds;Parent=Msa1397610-mRNA-1 |
| tig0022168 | CDS | 43979 | 43985 | 43979 | ID=Msa1397610-mRNA-1:cds;Parent=Msa1397610-mRNA-1 |
| tig0022168 | CDS | 43831 | 43959 | 43831 | ID=Msa1397610-mRNA-1:cds;Parent=Msa1397610-mRNA-1 |
| tig0022168 | CDS | 43318 | 43478 | 43318 | ID=Msa1397610-mRNA-1:cds;Parent=Msa1397610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
