Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287120 | GAU49845.1 | 90.625 | 160 | 15 | 0 | 1 | 160 | 1 | 160 | 5.65e-100 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287120 | sp|Q6L4D2|PM19L_ORYSJ | 46.154 | 143 | 63 | 3 | 13 | 154 | 12 | 141 | 1.85e-26 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0191020 | Msa0287120 | 0.819627 | 1.051875e-52 | -8.615850e-47 |
| Msa0211030 | Msa0287120 | 0.851659 | 7.683375e-61 | -8.615850e-47 |
| Msa0219590 | Msa0287120 | 0.812951 | 3.274019e-51 | -8.615850e-47 |
| Msa0233320 | Msa0287120 | 0.818001 | 2.461297e-52 | -8.615850e-47 |
| Msa0263920 | Msa0287120 | 0.807839 | 4.155008e-50 | -8.615850e-47 |
| Msa0287120 | Msa0829300 | 0.803497 | 3.389280e-49 | -8.615850e-47 |
| Msa0287120 | Msa0964310 | 0.810468 | 1.135665e-50 | -8.615850e-47 |
| Msa0287120 | Msa0996330 | 0.808625 | 2.824708e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287120 | MtrunA17_Chr2g0303931 | 95.625 | 160 | 7 | 0 | 1 | 160 | 1 | 160 | 2.87e-93 | 267 |
| Msa0287120 | MtrunA17_Chr6g0478031 | 74.342 | 152 | 39 | 0 | 6 | 157 | 1 | 152 | 7.33e-80 | 233 |
| Msa0287120 | MtrunA17_Chr4g0065951 | 48.252 | 143 | 71 | 2 | 21 | 160 | 21 | 163 | 2.50e-39 | 130 |
| Msa0287120 | MtrunA17_Chr1g0199041 | 45.070 | 142 | 64 | 3 | 13 | 153 | 12 | 140 | 1.25e-28 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0287120 | AT5G46530.1 | 69.481 | 154 | 47 | 0 | 1 | 154 | 1 | 154 | 4.21e-79 | 231 |
| Msa0287120 | AT1G29520.1 | 73.750 | 160 | 39 | 1 | 1 | 160 | 1 | 157 | 1.68e-74 | 220 |
| Msa0287120 | AT5G18970.1 | 45.098 | 153 | 84 | 0 | 1 | 153 | 1 | 153 | 2.13e-40 | 134 |
| Msa0287120 | AT1G04560.1 | 43.506 | 154 | 73 | 3 | 1 | 153 | 1 | 141 | 3.56e-32 | 113 |
Find 44 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCCTAGTCCTGTGTTTA+AGG | 0.115347 | 2_3:-29098340 | Msa0287120:five_prime_UTR |
| GTGTTATTTGCTTTGATTGC+TGG | 0.240660 | 2_3:-29097829 | Msa0287120:CDS |
| GCCAATTGCTACTCTTCTTT+TGG | 0.240696 | 2_3:-29098213 | Msa0287120:CDS |
| GGGATTGGATCATTGATTTC+AGG | 0.284608 | 2_3:-29097799 | Msa0287120:CDS |
| GGTGTGGTATATTACATAAT+TGG | 0.287282 | 2_3:-29097214 | Msa0287120:three_prime_UTR |
| TTCTACATAGCTGCTATTCA+TGG | 0.313701 | 2_3:-29097337 | Msa0287120:CDS |
| GGCTCTTACTGTTCTTGCTA+TGG | 0.345710 | 2_3:-29097707 | Msa0287120:CDS |
| ATTTCCCATAGGGAAGTATA+TGG | 0.353145 | 2_3:+29097870 | None:intergenic |
| TTCATGGTGCTGCTGCTATA+AGG | 0.353684 | 2_3:-29097321 | Msa0287120:CDS |
| CTTCAGTTGCTGCTATTGCA+TGG | 0.353823 | 2_3:-29097729 | Msa0287120:CDS |
| ATGATCAATTGCTCTATTCA+TGG | 0.373348 | 2_3:+29098142 | None:intergenic |
| TTACATAATTGGATTTGTAT+TGG | 0.379423 | 2_3:-29097203 | Msa0287120:three_prime_UTR |
| GCTCTTACTGTTCTTGCTAT+GGG | 0.388278 | 2_3:-29097706 | Msa0287120:CDS |
| GCTTTGATTGCTGGAGTTGT+TGG | 0.390206 | 2_3:-29097820 | Msa0287120:CDS |
| CTTTGATTGCTGGAGTTGTT+GGG | 0.394153 | 2_3:-29097819 | Msa0287120:CDS |
| ATTGCTGGAGTTGTTGGGAT+TGG | 0.414658 | 2_3:-29097814 | Msa0287120:CDS |
| TTCACCCATATACTTCCCTA+TGG | 0.422542 | 2_3:-29097875 | Msa0287120:CDS |
| GACTCAATCATATCCGTTCA+TGG | 0.439245 | 2_3:-29097777 | Msa0287120:CDS |
| TAACATCAGAAATGCTAGTC+TGG | 0.443721 | 2_3:-29097496 | Msa0287120:intron |
| TTCAGTTGCTGCTATTGCAT+GGG | 0.452736 | 2_3:-29097728 | Msa0287120:CDS |
| AATACCACAAAACTTAGAAA+TGG | 0.454906 | 2_3:-29098252 | Msa0287120:exon |
| TTGTTATAAGCATTGGTGGA+TGG | 0.461891 | 2_3:-29098166 | Msa0287120:CDS |
| TGTTATAAGCATTGGTGGAT+GGG | 0.469274 | 2_3:-29098165 | Msa0287120:CDS |
| GTCATTGTTATAAGCATTGG+TGG | 0.489752 | 2_3:-29098170 | Msa0287120:CDS |
| ATGAATAGAGCAATTGATCA+TGG | 0.493796 | 2_3:-29098140 | Msa0287120:CDS |
| ACAAATGTTGTGTGTAAATG+AGG | 0.498444 | 2_3:+29098361 | None:intergenic |
| TTCATGGACTTCAGAGAGCT+TGG | 0.499427 | 2_3:-29097761 | Msa0287120:CDS |
| ACCAAAAGAAGAGTAGCAAT+TGG | 0.500043 | 2_3:+29098212 | None:intergenic |
| CCTATGGGAAATGCTGCCAC+TGG | 0.504730 | 2_3:-29097859 | Msa0287120:CDS |
| AGAAAAGCTGTGTAGCTGTA+AGG | 0.509231 | 2_3:+29097356 | None:intergenic |
| CAAGTATATACGAGAAGTGA+TGG | 0.519155 | 2_3:+29098408 | None:intergenic |
| TCACCCATATACTTCCCTAT+GGG | 0.537916 | 2_3:-29097874 | Msa0287120:CDS |
| CTCTTACTGTTCTTGCTATG+GGG | 0.540451 | 2_3:-29097705 | Msa0287120:intron |
| CAGTGGCAGCATTTCCCATA+GGG | 0.547995 | 2_3:+29097860 | None:intergenic |
| TATGTCATTGTTATAAGCAT+TGG | 0.550512 | 2_3:-29098173 | Msa0287120:CDS |
| TGAGCAGGAAGATCAAATCC+TGG | 0.560912 | 2_3:+29097901 | None:intergenic |
| CCAGTGGCAGCATTTCCCAT+AGG | 0.588951 | 2_3:+29097859 | None:intergenic |
| AATGCCTTAAACACAGGACT+AGG | 0.590612 | 2_3:+29098336 | None:intergenic |
| TTTCCCATAGGGAAGTATAT+GGG | 0.602197 | 2_3:+29097871 | None:intergenic |
| TAATCAATGATTGAATGTGT+TGG | 0.607134 | 2_3:-29097289 | Msa0287120:three_prime_UTR |
| TAAGGGAAGGGAATTTCAGA+AGG | 0.622917 | 2_3:+29098294 | None:intergenic |
| AGCTCTCTGAAGTCCATGAA+CGG | 0.627243 | 2_3:+29097764 | None:intergenic |
| CAAATGTTGTGTGTAAATGA+GGG | 0.655593 | 2_3:+29098362 | None:intergenic |
| AAATAACACAAAGAAACCAG+TGG | 0.723783 | 2_3:+29097843 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTATTTATTTTT+TGG | - | chr2_3:29098279-29098298 | Msa0287120:five_prime_UTR | 0.0% |
| !!! | TTATTTTTTTATTTATTTTT+TGG | - | chr2_3:29098279-29098298 | Msa0287120:five_prime_UTR | 0.0% |
| !!! | TTTTTATTTATTTTTTGGTG+TGG | - | chr2_3:29098284-29098303 | Msa0287120:five_prime_UTR | 15.0% |
| !!! | TTTTTATTTATTTTTTGGTG+TGG | - | chr2_3:29098284-29098303 | Msa0287120:five_prime_UTR | 15.0% |
| !!! | AATTGATTTTGATATTTGAG+TGG | - | chr2_3:29097478-29097497 | Msa0287120:intron | 20.0% |
| !! | AATTCAAAACTCTTTGTTAA+GGG | + | chr2_3:29098098-29098117 | None:intergenic | 20.0% |
| !! | TTACATAATTGGATTTGTAT+TGG | - | chr2_3:29098311-29098330 | Msa0287120:five_prime_UTR | 20.0% |
| !!! | AATTGATTTTGATATTTGAG+TGG | - | chr2_3:29097478-29097497 | Msa0287120:intron | 20.0% |
| !! | AATTCAAAACTCTTTGTTAA+GGG | + | chr2_3:29098098-29098117 | None:intergenic | 20.0% |
| !! | TTACATAATTGGATTTGTAT+TGG | - | chr2_3:29098311-29098330 | Msa0287120:five_prime_UTR | 20.0% |
| ! | AACAAACAAAAAAGAGCTAA+GGG | + | chr2_3:29097240-29097259 | None:intergenic | 25.0% |
| !!! | ATTTCTAAGTTTTGTGGTAT+TGG | + | chr2_3:29097263-29097282 | None:intergenic | 25.0% |
| ! | AATACCACAAAACTTAGAAA+TGG | - | chr2_3:29097262-29097281 | Msa0287120:three_prime_UTR | 25.0% |
| ! | TATGTCATTGTTATAAGCAT+TGG | - | chr2_3:29097341-29097360 | Msa0287120:CDS | 25.0% |
| !!! | ATTGATCATGGTTTTGTAAT+AGG | - | chr2_3:29097386-29097405 | Msa0287120:intron | 25.0% |
| !!! | AATCTTTTCGTTTTGTTTCA+CGG | - | chr2_3:29097422-29097441 | Msa0287120:intron | 25.0% |
| !! | AAATTTACAAGATGTTGCTT+CGG | + | chr2_3:29097564-29097583 | None:intergenic | 25.0% |
| ! | GTAAATTTACTTATTCAGCT+TGG | - | chr2_3:29097576-29097595 | Msa0287120:intron | 25.0% |
| ! | ATCATCAAAGTTATAAATCG+AGG | - | chr2_3:29097867-29097886 | Msa0287120:CDS | 25.0% |
| ! | CAATTCAAAACTCTTTGTTA+AGG | + | chr2_3:29098099-29098118 | None:intergenic | 25.0% |
| ! | TAATCAATGATTGAATGTGT+TGG | - | chr2_3:29098225-29098244 | Msa0287120:CDS | 25.0% |
| ! | AACAAACAAAAAAGAGCTAA+GGG | + | chr2_3:29097240-29097259 | None:intergenic | 25.0% |
| !!! | ATTTCTAAGTTTTGTGGTAT+TGG | + | chr2_3:29097263-29097282 | None:intergenic | 25.0% |
| ! | AATACCACAAAACTTAGAAA+TGG | - | chr2_3:29097262-29097281 | Msa0287120:three_prime_UTR | 25.0% |
| ! | TATGTCATTGTTATAAGCAT+TGG | - | chr2_3:29097341-29097360 | Msa0287120:CDS | 25.0% |
| !!! | ATTGATCATGGTTTTGTAAT+AGG | - | chr2_3:29097386-29097405 | Msa0287120:intron | 25.0% |
| !!! | AATCTTTTCGTTTTGTTTCA+CGG | - | chr2_3:29097422-29097441 | Msa0287120:intron | 25.0% |
| !! | AAATTTACAAGATGTTGCTT+CGG | + | chr2_3:29097564-29097583 | None:intergenic | 25.0% |
| ! | GTAAATTTACTTATTCAGCT+TGG | - | chr2_3:29097576-29097595 | Msa0287120:intron | 25.0% |
| ! | ATCATCAAAGTTATAAATCG+AGG | - | chr2_3:29097867-29097886 | Msa0287120:CDS | 25.0% |
| ! | CAATTCAAAACTCTTTGTTA+AGG | + | chr2_3:29098099-29098118 | None:intergenic | 25.0% |
| ! | TAATCAATGATTGAATGTGT+TGG | - | chr2_3:29098225-29098244 | Msa0287120:CDS | 25.0% |
| CAAATGTTGTGTGTAAATGA+GGG | + | chr2_3:29097155-29097174 | None:intergenic | 30.0% | |
| ACAAATGTTGTGTGTAAATG+AGG | + | chr2_3:29097156-29097175 | None:intergenic | 30.0% | |
| AAGAAAAATGCCTTAAACAC+AGG | + | chr2_3:29097187-29097206 | None:intergenic | 30.0% | |
| GAACAAACAAAAAAGAGCTA+AGG | + | chr2_3:29097241-29097260 | None:intergenic | 30.0% | |
| !! | TTTGCCATTTCTAAGTTTTG+TGG | + | chr2_3:29097269-29097288 | None:intergenic | 30.0% |
| ATGATCAATTGCTCTATTCA+TGG | + | chr2_3:29097375-29097394 | None:intergenic | 30.0% | |
| ATGAATAGAGCAATTGATCA+TGG | - | chr2_3:29097374-29097393 | Msa0287120:CDS | 30.0% | |
| GCAAGAACTAAAAGTGATTT+CGG | - | chr2_3:29097447-29097466 | Msa0287120:intron | 30.0% | |
| AAATAACACAAAGAAACCAG+TGG | + | chr2_3:29097674-29097693 | None:intergenic | 30.0% | |
| AAAGTTATAAATCGAGGTTG+CGG | - | chr2_3:29097873-29097892 | Msa0287120:CDS | 30.0% | |
| ! | TTACAGAATGCCATTTAGTA+AGG | + | chr2_3:29097931-29097950 | None:intergenic | 30.0% |
| !! | ATATGCCACTTTACTAGTTA+GGG | + | chr2_3:29097962-29097981 | None:intergenic | 30.0% |
| !!! | CATATGATTTTTTGCAGCTT+TGG | - | chr2_3:29097977-29097996 | Msa0287120:intron | 30.0% |
| ! | GACGGTAAATATATTTTTCC+CGG | + | chr2_3:29098049-29098068 | None:intergenic | 30.0% |
| ! | TTCAATTTTGCAGAAAGCTA+TGG | - | chr2_3:29098119-29098138 | Msa0287120:intron | 30.0% |
| GGTGTGGTATATTACATAAT+TGG | - | chr2_3:29098300-29098319 | Msa0287120:five_prime_UTR | 30.0% | |
| CAAATGTTGTGTGTAAATGA+GGG | + | chr2_3:29097155-29097174 | None:intergenic | 30.0% | |
| ACAAATGTTGTGTGTAAATG+AGG | + | chr2_3:29097156-29097175 | None:intergenic | 30.0% | |
| AAGAAAAATGCCTTAAACAC+AGG | + | chr2_3:29097187-29097206 | None:intergenic | 30.0% | |
| GAACAAACAAAAAAGAGCTA+AGG | + | chr2_3:29097241-29097260 | None:intergenic | 30.0% | |
| !! | TTTGCCATTTCTAAGTTTTG+TGG | + | chr2_3:29097269-29097288 | None:intergenic | 30.0% |
| ATGATCAATTGCTCTATTCA+TGG | + | chr2_3:29097375-29097394 | None:intergenic | 30.0% | |
| ATGAATAGAGCAATTGATCA+TGG | - | chr2_3:29097374-29097393 | Msa0287120:CDS | 30.0% | |
| GCAAGAACTAAAAGTGATTT+CGG | - | chr2_3:29097447-29097466 | Msa0287120:intron | 30.0% | |
| AAATAACACAAAGAAACCAG+TGG | + | chr2_3:29097674-29097693 | None:intergenic | 30.0% | |
| AAAGTTATAAATCGAGGTTG+CGG | - | chr2_3:29097873-29097892 | Msa0287120:CDS | 30.0% | |
| ! | TTACAGAATGCCATTTAGTA+AGG | + | chr2_3:29097931-29097950 | None:intergenic | 30.0% |
| !! | ATATGCCACTTTACTAGTTA+GGG | + | chr2_3:29097962-29097981 | None:intergenic | 30.0% |
| !!! | CATATGATTTTTTGCAGCTT+TGG | - | chr2_3:29097977-29097996 | Msa0287120:intron | 30.0% |
| ! | GACGGTAAATATATTTTTCC+CGG | + | chr2_3:29098049-29098068 | None:intergenic | 30.0% |
| ! | TTCAATTTTGCAGAAAGCTA+TGG | - | chr2_3:29098119-29098138 | Msa0287120:intron | 30.0% |
| GGTGTGGTATATTACATAAT+TGG | - | chr2_3:29098300-29098319 | Msa0287120:five_prime_UTR | 30.0% | |
| CAAGTATATACGAGAAGTGA+TGG | + | chr2_3:29097109-29097128 | None:intergenic | 35.0% | |
| ACAAAAAAGAGCTAAGGGAA+GGG | + | chr2_3:29097235-29097254 | None:intergenic | 35.0% | |
| AACAAAAAAGAGCTAAGGGA+AGG | + | chr2_3:29097236-29097255 | None:intergenic | 35.0% | |
| ACCAAAAGAAGAGTAGCAAT+TGG | + | chr2_3:29097305-29097324 | None:intergenic | 35.0% | |
| !! | GTCATTGTTATAAGCATTGG+TGG | - | chr2_3:29097344-29097363 | Msa0287120:CDS | 35.0% |
| !! | TTGTTATAAGCATTGGTGGA+TGG | - | chr2_3:29097348-29097367 | Msa0287120:CDS | 35.0% |
| !! | TGTTATAAGCATTGGTGGAT+GGG | - | chr2_3:29097349-29097368 | Msa0287120:CDS | 35.0% |
| TATATGGGTGAAAAATGAGC+AGG | + | chr2_3:29097631-29097650 | None:intergenic | 35.0% | |
| ! | TTTCCCATAGGGAAGTATAT+GGG | + | chr2_3:29097646-29097665 | None:intergenic | 35.0% |
| ! | ATTTCCCATAGGGAAGTATA+TGG | + | chr2_3:29097647-29097666 | None:intergenic | 35.0% |
| !! | GTGTTATTTGCTTTGATTGC+TGG | - | chr2_3:29097685-29097704 | Msa0287120:intron | 35.0% |
| ATATCGCAGACCTTACTAAA+TGG | - | chr2_3:29097918-29097937 | Msa0287120:intron | 35.0% | |
| !! | CATATGCCACTTTACTAGTT+AGG | + | chr2_3:29097963-29097982 | None:intergenic | 35.0% |
| TAACATCAGAAATGCTAGTC+TGG | - | chr2_3:29098018-29098037 | Msa0287120:intron | 35.0% | |
| TACGAACATCAGAAAAACGA+CGG | + | chr2_3:29098067-29098086 | None:intergenic | 35.0% | |
| ! | AATTTTGCAGAAAGCTATGG+AGG | - | chr2_3:29098122-29098141 | Msa0287120:intron | 35.0% |
| TTCTACATAGCTGCTATTCA+TGG | - | chr2_3:29098177-29098196 | Msa0287120:CDS | 35.0% | |
| CAAGTATATACGAGAAGTGA+TGG | + | chr2_3:29097109-29097128 | None:intergenic | 35.0% | |
| ACAAAAAAGAGCTAAGGGAA+GGG | + | chr2_3:29097235-29097254 | None:intergenic | 35.0% | |
| AACAAAAAAGAGCTAAGGGA+AGG | + | chr2_3:29097236-29097255 | None:intergenic | 35.0% | |
| ACCAAAAGAAGAGTAGCAAT+TGG | + | chr2_3:29097305-29097324 | None:intergenic | 35.0% | |
| !! | GTCATTGTTATAAGCATTGG+TGG | - | chr2_3:29097344-29097363 | Msa0287120:CDS | 35.0% |
| !! | TTGTTATAAGCATTGGTGGA+TGG | - | chr2_3:29097348-29097367 | Msa0287120:CDS | 35.0% |
| !! | TGTTATAAGCATTGGTGGAT+GGG | - | chr2_3:29097349-29097368 | Msa0287120:CDS | 35.0% |
| TATATGGGTGAAAAATGAGC+AGG | + | chr2_3:29097631-29097650 | None:intergenic | 35.0% | |
| ! | TTTCCCATAGGGAAGTATAT+GGG | + | chr2_3:29097646-29097665 | None:intergenic | 35.0% |
| ! | ATTTCCCATAGGGAAGTATA+TGG | + | chr2_3:29097647-29097666 | None:intergenic | 35.0% |
| !! | GTGTTATTTGCTTTGATTGC+TGG | - | chr2_3:29097685-29097704 | Msa0287120:intron | 35.0% |
| ATATCGCAGACCTTACTAAA+TGG | - | chr2_3:29097918-29097937 | Msa0287120:intron | 35.0% | |
| !! | CATATGCCACTTTACTAGTT+AGG | + | chr2_3:29097963-29097982 | None:intergenic | 35.0% |
| TAACATCAGAAATGCTAGTC+TGG | - | chr2_3:29098018-29098037 | Msa0287120:intron | 35.0% | |
| TACGAACATCAGAAAAACGA+CGG | + | chr2_3:29098067-29098086 | None:intergenic | 35.0% | |
| ! | AATTTTGCAGAAAGCTATGG+AGG | - | chr2_3:29098122-29098141 | Msa0287120:intron | 35.0% |
| TTCTACATAGCTGCTATTCA+TGG | - | chr2_3:29098177-29098196 | Msa0287120:CDS | 35.0% | |
| GTATCCTAGTCCTGTGTTTA+AGG | - | chr2_3:29097174-29097193 | Msa0287120:three_prime_UTR | 40.0% | |
| AATGCCTTAAACACAGGACT+AGG | + | chr2_3:29097181-29097200 | None:intergenic | 40.0% | |
| TAAGGGAAGGGAATTTCAGA+AGG | + | chr2_3:29097223-29097242 | None:intergenic | 40.0% | |
| ! | GCCAATTGCTACTCTTCTTT+TGG | - | chr2_3:29097301-29097320 | Msa0287120:exon | 40.0% |
| TTCAGCTTGGTTATGTTTGC+AGG | - | chr2_3:29097589-29097608 | Msa0287120:intron | 40.0% | |
| TTCACCCATATACTTCCCTA+TGG | - | chr2_3:29097639-29097658 | Msa0287120:intron | 40.0% | |
| TCACCCATATACTTCCCTAT+GGG | - | chr2_3:29097640-29097659 | Msa0287120:intron | 40.0% | |
| CTTTGATTGCTGGAGTTGTT+GGG | - | chr2_3:29097695-29097714 | Msa0287120:intron | 40.0% | |
| !! | GGGATTGGATCATTGATTTC+AGG | - | chr2_3:29097715-29097734 | Msa0287120:CDS | 40.0% |
| GACTCAATCATATCCGTTCA+TGG | - | chr2_3:29097737-29097756 | Msa0287120:CDS | 40.0% | |
| TTCAGTTGCTGCTATTGCAT+GGG | - | chr2_3:29097786-29097805 | Msa0287120:CDS | 40.0% | |
| ! | GCTCTTACTGTTCTTGCTAT+GGG | - | chr2_3:29097808-29097827 | Msa0287120:CDS | 40.0% |
| ! | CTCTTACTGTTCTTGCTATG+GGG | - | chr2_3:29097809-29097828 | Msa0287120:CDS | 40.0% |
| AAGGTCTGCGATATAAGACT+TGG | + | chr2_3:29097912-29097931 | None:intergenic | 40.0% | |
| CACATCCCTAACTAGTAAAG+TGG | - | chr2_3:29097954-29097973 | Msa0287120:intron | 40.0% | |
| ! | AAATGCTAGTCTGGTAAGAC+CGG | - | chr2_3:29098027-29098046 | Msa0287120:intron | 40.0% |
| AGAAAAGCTGTGTAGCTGTA+AGG | + | chr2_3:29098161-29098180 | None:intergenic | 40.0% | |
| GTATCCTAGTCCTGTGTTTA+AGG | - | chr2_3:29097174-29097193 | Msa0287120:three_prime_UTR | 40.0% | |
| AATGCCTTAAACACAGGACT+AGG | + | chr2_3:29097181-29097200 | None:intergenic | 40.0% | |
| TAAGGGAAGGGAATTTCAGA+AGG | + | chr2_3:29097223-29097242 | None:intergenic | 40.0% | |
| ! | GCCAATTGCTACTCTTCTTT+TGG | - | chr2_3:29097301-29097320 | Msa0287120:exon | 40.0% |
| TTCAGCTTGGTTATGTTTGC+AGG | - | chr2_3:29097589-29097608 | Msa0287120:intron | 40.0% | |
| TTCACCCATATACTTCCCTA+TGG | - | chr2_3:29097639-29097658 | Msa0287120:intron | 40.0% | |
| TCACCCATATACTTCCCTAT+GGG | - | chr2_3:29097640-29097659 | Msa0287120:intron | 40.0% | |
| CTTTGATTGCTGGAGTTGTT+GGG | - | chr2_3:29097695-29097714 | Msa0287120:intron | 40.0% | |
| !! | GGGATTGGATCATTGATTTC+AGG | - | chr2_3:29097715-29097734 | Msa0287120:CDS | 40.0% |
| GACTCAATCATATCCGTTCA+TGG | - | chr2_3:29097737-29097756 | Msa0287120:CDS | 40.0% | |
| TTCAGTTGCTGCTATTGCAT+GGG | - | chr2_3:29097786-29097805 | Msa0287120:CDS | 40.0% | |
| ! | GCTCTTACTGTTCTTGCTAT+GGG | - | chr2_3:29097808-29097827 | Msa0287120:CDS | 40.0% |
| ! | CTCTTACTGTTCTTGCTATG+GGG | - | chr2_3:29097809-29097828 | Msa0287120:CDS | 40.0% |
| AAGGTCTGCGATATAAGACT+TGG | + | chr2_3:29097912-29097931 | None:intergenic | 40.0% | |
| CACATCCCTAACTAGTAAAG+TGG | - | chr2_3:29097954-29097973 | Msa0287120:intron | 40.0% | |
| ! | AAATGCTAGTCTGGTAAGAC+CGG | - | chr2_3:29098027-29098046 | Msa0287120:intron | 40.0% |
| AGAAAAGCTGTGTAGCTGTA+AGG | + | chr2_3:29098161-29098180 | None:intergenic | 40.0% | |
| ATCGCAGAACCATACAGACT+TGG | - | chr2_3:29097537-29097556 | Msa0287120:intron | 45.0% | |
| TTGGTTATGTTTGCAGGTCC+AGG | - | chr2_3:29097595-29097614 | Msa0287120:intron | 45.0% | |
| TGAGCAGGAAGATCAAATCC+TGG | + | chr2_3:29097616-29097635 | None:intergenic | 45.0% | |
| GCTTTGATTGCTGGAGTTGT+TGG | - | chr2_3:29097694-29097713 | Msa0287120:intron | 45.0% | |
| ATTGCTGGAGTTGTTGGGAT+TGG | - | chr2_3:29097700-29097719 | Msa0287120:intron | 45.0% | |
| !! | AGCTCTCTGAAGTCCATGAA+CGG | + | chr2_3:29097753-29097772 | None:intergenic | 45.0% |
| TTCATGGACTTCAGAGAGCT+TGG | - | chr2_3:29097753-29097772 | Msa0287120:CDS | 45.0% | |
| CTTCAGTTGCTGCTATTGCA+TGG | - | chr2_3:29097785-29097804 | Msa0287120:CDS | 45.0% | |
| GGCTCTTACTGTTCTTGCTA+TGG | - | chr2_3:29097807-29097826 | Msa0287120:CDS | 45.0% | |
| ! | AATGCTAGTCTGGTAAGACC+GGG | - | chr2_3:29098028-29098047 | Msa0287120:intron | 45.0% |
| !! | TTCATGGTGCTGCTGCTATA+AGG | - | chr2_3:29098193-29098212 | Msa0287120:CDS | 45.0% |
| ATCGCAGAACCATACAGACT+TGG | - | chr2_3:29097537-29097556 | Msa0287120:intron | 45.0% | |
| TTGGTTATGTTTGCAGGTCC+AGG | - | chr2_3:29097595-29097614 | Msa0287120:intron | 45.0% | |
| TGAGCAGGAAGATCAAATCC+TGG | + | chr2_3:29097616-29097635 | None:intergenic | 45.0% | |
| GCTTTGATTGCTGGAGTTGT+TGG | - | chr2_3:29097694-29097713 | Msa0287120:intron | 45.0% | |
| ATTGCTGGAGTTGTTGGGAT+TGG | - | chr2_3:29097700-29097719 | Msa0287120:intron | 45.0% | |
| !! | AGCTCTCTGAAGTCCATGAA+CGG | + | chr2_3:29097753-29097772 | None:intergenic | 45.0% |
| TTCATGGACTTCAGAGAGCT+TGG | - | chr2_3:29097753-29097772 | Msa0287120:CDS | 45.0% | |
| CTTCAGTTGCTGCTATTGCA+TGG | - | chr2_3:29097785-29097804 | Msa0287120:CDS | 45.0% | |
| GGCTCTTACTGTTCTTGCTA+TGG | - | chr2_3:29097807-29097826 | Msa0287120:CDS | 45.0% | |
| ! | AATGCTAGTCTGGTAAGACC+GGG | - | chr2_3:29098028-29098047 | Msa0287120:intron | 45.0% |
| !! | TTCATGGTGCTGCTGCTATA+AGG | - | chr2_3:29098193-29098212 | Msa0287120:CDS | 45.0% |
| !! | ATAAATAAAAAAATAATTCA+AGG | + | chr2_3:29098275-29098294 | None:intergenic | 5.0% |
| !! | ATAAATAAAAAAATAATTCA+AGG | + | chr2_3:29098275-29098294 | None:intergenic | 5.0% |
| TGCTTCGGTCCAAGTCTGTA+TGG | + | chr2_3:29097549-29097568 | None:intergenic | 50.0% | |
| CAGTGGCAGCATTTCCCATA+GGG | + | chr2_3:29097657-29097676 | None:intergenic | 50.0% | |
| TGCTTCGGTCCAAGTCTGTA+TGG | + | chr2_3:29097549-29097568 | None:intergenic | 50.0% | |
| CAGTGGCAGCATTTCCCATA+GGG | + | chr2_3:29097657-29097676 | None:intergenic | 50.0% | |
| CCAGTGGCAGCATTTCCCAT+AGG | + | chr2_3:29097658-29097677 | None:intergenic | 55.0% | |
| CCTATGGGAAATGCTGCCAC+TGG | - | chr2_3:29097655-29097674 | Msa0287120:intron | 55.0% | |
| CCAGTGGCAGCATTTCCCAT+AGG | + | chr2_3:29097658-29097677 | None:intergenic | 55.0% | |
| CCTATGGGAAATGCTGCCAC+TGG | - | chr2_3:29097655-29097674 | Msa0287120:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 29097099 | 29098437 | 29097099 | ID=Msa0287120;Name=Msa0287120 |
| chr2_3 | mRNA | 29097099 | 29098437 | 29097099 | ID=Msa0287120-mRNA-1;Parent=Msa0287120;Name=Msa0287120-mRNA-1;_AED=0.03;_eAED=0.03;_QI=182|1|1|1|1|1|4|216|160 |
| chr2_3 | exon | 29097099 | 29097404 | 29097099 | ID=Msa0287120-mRNA-1:exon:10263;Parent=Msa0287120-mRNA-1 |
| chr2_3 | exon | 29097497 | 29097542 | 29097497 | ID=Msa0287120-mRNA-1:exon:10262;Parent=Msa0287120-mRNA-1 |
| chr2_3 | exon | 29097706 | 29097925 | 29097706 | ID=Msa0287120-mRNA-1:exon:10261;Parent=Msa0287120-mRNA-1 |
| chr2_3 | exon | 29098129 | 29098437 | 29098129 | ID=Msa0287120-mRNA-1:exon:10260;Parent=Msa0287120-mRNA-1 |
| chr2_3 | five_prime_UTR | 29098256 | 29098437 | 29098256 | ID=Msa0287120-mRNA-1:five_prime_utr;Parent=Msa0287120-mRNA-1 |
| chr2_3 | CDS | 29098129 | 29098255 | 29098129 | ID=Msa0287120-mRNA-1:cds;Parent=Msa0287120-mRNA-1 |
| chr2_3 | CDS | 29097706 | 29097925 | 29097706 | ID=Msa0287120-mRNA-1:cds;Parent=Msa0287120-mRNA-1 |
| chr2_3 | CDS | 29097497 | 29097542 | 29097497 | ID=Msa0287120-mRNA-1:cds;Parent=Msa0287120-mRNA-1 |
| chr2_3 | CDS | 29097315 | 29097404 | 29097315 | ID=Msa0287120-mRNA-1:cds;Parent=Msa0287120-mRNA-1 |
| chr2_3 | three_prime_UTR | 29097099 | 29097314 | 29097099 | ID=Msa0287120-mRNA-1:three_prime_utr;Parent=Msa0287120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
