AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0219590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219590 MtrunA17_Chr2g0322801 86.260 262 9 1 7 241 46 307 1.69e-147 414
Msa0219590 MtrunA17_Chr6g0461261 57.529 259 83 1 7 238 41 299 7.55e-92 272
Msa0219590 MtrunA17_Chr2g0281201 43.089 246 113 1 17 235 4 249 1.56e-66 206
Msa0219590 MtrunA17_Chr4g0048121 46.341 246 102 3 1 219 38 280 6.81e-66 206
Msa0219590 MtrunA17_Chr1g0177131 42.105 266 124 3 1 239 49 311 4.10e-58 187
Msa0219590 MtrunA17_Chr5g0398891 40.574 244 114 3 5 217 53 296 3.05e-52 172
Msa0219590 MtrunA17_Chr1g0177121 38.235 238 120 2 7 217 48 285 1.01e-50 167
Msa0219590 MtrunA17_Chr7g0267551 35.000 240 129 2 7 219 35 274 3.55e-44 150
Msa0219590 MtrunA17_Chr5g0404401 32.189 233 119 5 13 216 54 276 3.02e-29 111
Msa0219590 MtrunA17_Chr2g0322811 61.538 52 20 0 188 239 124 175 2.34e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0219590 AT5G08080.1 62.977 262 68 2 7 240 41 301 1.42e-92 275
Msa0219590 AT5G08080.4 62.977 262 68 2 7 240 41 301 1.42e-92 275
Msa0219590 AT3G03800.2 57.143 259 84 1 7 238 42 300 2.03e-92 274
Msa0219590 AT3G03800.1 57.143 259 84 1 7 238 42 300 2.03e-92 274
Msa0219590 AT5G08080.3 64.463 242 57 2 27 240 72 312 8.61e-92 273
Msa0219590 AT1G61290.1 41.057 246 118 2 17 235 50 295 1.48e-62 198
Msa0219590 AT1G61290.2 41.057 246 118 2 17 235 50 295 1.48e-62 198
Msa0219590 AT1G11250.1 45.652 230 98 2 17 219 45 274 3.95e-61 194
Msa0219590 AT3G11820.2 42.910 268 116 2 11 241 14 281 1.06e-58 188
Msa0219590 AT3G11820.1 42.910 268 116 2 11 241 45 312 3.00e-58 188
Msa0219590 AT4G03330.1 40.000 240 117 1 7 219 43 282 2.06e-56 182
Msa0219590 AT3G52400.1 40.377 265 131 1 4 241 47 311 2.11e-53 176
Msa0219590 AT5G08080.5 51.553 161 49 2 7 139 41 200 6.58e-41 140
Msa0219590 AT5G08080.2 51.553 161 49 2 7 139 41 200 6.58e-41 140
Msa0219590 AT1G08560.1 36.245 229 114 4 17 217 62 286 4.46e-40 140
Msa0219590 AT2G18260.2 30.328 244 146 5 14 235 61 302 1.25e-29 113
Msa0219590 AT2G18260.1 30.328 244 146 5 14 235 61 302 1.25e-29 113

Find 63 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGAAGAATTCTCGAAAA+TGG 0.249054 2_1:+67298246 Msa0219590:CDS
CATTGTAACAATACCTTTCA+TGG 0.265022 2_1:-67296334 None:intergenic
CACTGTTTCCAGTTTCTATC+AGG 0.281644 2_1:-67297374 None:intergenic
CAACACGACTCTTATATATA+TGG 0.322567 2_1:-67298359 None:intergenic
CAATTTGTTTATCAGCATCT+TGG 0.358355 2_1:-67296138 None:intergenic
ATTGATCACCTGATAGAAAC+TGG 0.373241 2_1:+67297366 Msa0219590:CDS
CTCATCATCTGGCCTAGTTC+CGG 0.383204 2_1:-67297251 None:intergenic
AATGAATGAATGATTGTGTT+TGG 0.393946 2_1:-67294972 None:intergenic
GAAGTGCAGTTGTCCCTCTC+TGG 0.397740 2_1:-67298208 None:intergenic
GAGCACTGTAGAAGAAATTC+AGG 0.406577 2_1:+67297847 Msa0219590:CDS
ATAGTAGCTATCATAGTTGT+TGG 0.420632 2_1:+67298299 Msa0219590:CDS
GAAAAGGATATTGATGAAGT+TGG 0.433278 2_1:+67296596 Msa0219590:CDS
TCCTTGTACCATTCTAAAGC+TGG 0.436006 2_1:+67298571 Msa0219590:three_prime_UTR
ATCAAACTCACCTCATCATC+TGG 0.438481 2_1:-67297262 None:intergenic
AAAACTTCTTGATTTACATC+AGG 0.438716 2_1:+67297901 Msa0219590:CDS
TGATAGCTACTATTATTAAC+AGG 0.438948 2_1:-67298289 None:intergenic
TTGTTGGCGTTCTCAAACCT+TGG 0.450158 2_1:+67298315 Msa0219590:CDS
TTGTTGAGAGAGAGAGTTCG+TGG 0.450917 2_1:+67294910 Msa0219590:five_prime_UTR
TATATAAGAGTCGTGTTGGT+TGG 0.462327 2_1:+67298364 Msa0219590:three_prime_UTR
ATTCTTCAGTTACCGGAACT+AGG 0.465753 2_1:+67297239 Msa0219590:intron
AAGCATTTGCATGCGTCGGC+AGG 0.467967 2_1:+67298389 Msa0219590:three_prime_UTR
ATATAAGAGTCGTGTTGGTT+GGG 0.474567 2_1:+67298365 Msa0219590:three_prime_UTR
CAATATATGTCACAAGCAAA+TGG 0.477331 2_1:-67298602 None:intergenic
TTTAGACAACATCGAAAGCC+AGG 0.482075 2_1:+67298059 Msa0219590:CDS
GACAAGAAACAAAATAGAAA+AGG 0.483517 2_1:+67294873 None:intergenic
CGCGCTACTTCAAAAGCTAA+AGG 0.483869 2_1:+67296171 Msa0219590:CDS
CATTCTTGCTCTGTCAATAC+CGG 0.495403 2_1:-67296809 None:intergenic
CAGCAGGCAATTCTTGAAGC+AGG 0.507428 2_1:+67297408 Msa0219590:CDS
CAAAAGCCTGGCTGTGAGAA+GGG 0.509684 2_1:+67296784 Msa0219590:CDS
CAACAAAACCAGCTTTAGAA+TGG 0.512775 2_1:-67298579 None:intergenic
TATTATTAACAGGATGATGA+TGG 0.524137 2_1:-67298279 None:intergenic
CTAAACAATAGACAAAAGCC+TGG 0.535553 2_1:+67296772 Msa0219590:CDS
CATATATATAAGAGTCGTGT+TGG 0.536884 2_1:+67298360 Msa0219590:three_prime_UTR
CTGCTTCAAGAATTGCCTGC+TGG 0.537374 2_1:-67297407 None:intergenic
TCTTGAAGCAGGCCGAGGAC+AGG 0.542090 2_1:+67297419 Msa0219590:CDS
CGGCAGGAACATCTTAGAGC+AGG 0.545447 2_1:+67298405 Msa0219590:three_prime_UTR
ACAAAAGCCTGGCTGTGAGA+AGG 0.549254 2_1:+67296783 Msa0219590:CDS
GGGAAAGCATTTGCATGCGT+CGG 0.549488 2_1:+67298385 Msa0219590:three_prime_UTR
CAGTGAGCAAATCTTCCAGC+AGG 0.550714 2_1:+67297392 Msa0219590:CDS
ACAAAAGCATCTGCCATGAA+AGG 0.562432 2_1:+67296321 Msa0219590:CDS
CCGGTGCCCTTCTCACAGCC+AGG 0.564232 2_1:-67296790 None:intergenic
ATAAATCAAATACCTGTCCT+CGG 0.565543 2_1:-67297431 None:intergenic
CGGAACTAGGCCAGATGATG+AGG 0.583696 2_1:+67297252 Msa0219590:CDS
CCTGGCTGTGAGAAGGGCAC+CGG 0.587319 2_1:+67296790 Msa0219590:CDS
CTCTTATATATATGGACAAG+GGG 0.595255 2_1:-67298351 None:intergenic
TGCTGATAAACAAATTGAGA+AGG 0.597365 2_1:+67296144 Msa0219590:CDS
AATATGAACTTACAGTGAGA+AGG 0.599086 2_1:-67295070 None:intergenic
CAGTCGATCATGTCCAGAGA+GGG 0.599590 2_1:+67298195 Msa0219590:CDS
GACTCTTATATATATGGACA+AGG 0.600124 2_1:-67298353 None:intergenic
GCAATTCTTGAAGCAGGCCG+AGG 0.602480 2_1:+67297414 Msa0219590:CDS
CAACTAAGACTGCCATGTCA+AGG 0.609214 2_1:-67298020 None:intergenic
GGGGACTAAGAACTCTTCCA+AGG 0.610257 2_1:-67298332 None:intergenic
TGTTGAGAGAGAGAGTTCGT+GGG 0.611762 2_1:+67294911 Msa0219590:five_prime_UTR
ACCAGCTTTAGAATGGTACA+AGG 0.615283 2_1:-67298572 None:intergenic
TAAAGAGAGACAAAATGAGA+GGG 0.616457 2_1:-67298662 None:intergenic
ACTCTTATATATATGGACAA+GGG 0.621822 2_1:-67298352 None:intergenic
AGTTGGAAAGATTGCACATG+GGG 0.621884 2_1:+67296613 Msa0219590:CDS
GCAGTCTTAGTTGATGCTCA+AGG 0.625652 2_1:+67298030 Msa0219590:CDS
GTGTTGACTTGCTAATACAT+CGG 0.648510 2_1:+67298475 Msa0219590:three_prime_UTR
GAAGTTGGAAAGATTGCACA+TGG 0.661524 2_1:+67296611 Msa0219590:CDS
AACGACAGCGATGTTAAGCG+AGG 0.687746 2_1:-67294937 None:intergenic
GCAGTCGATCATGTCCAGAG+AGG 0.713009 2_1:+67298194 Msa0219590:CDS
AAGTTGGAAAGATTGCACAT+GGG 0.717743 2_1:+67296612 Msa0219590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAAATAAAAAATAATCT+TGG - chr2_1:67297716-67297735 None:intergenic 10.0%
!!! CATTTTTTTTAAACTATAAG+CGG + chr2_1:67295697-67295716 Msa0219590:intron 15.0%
!!! AATTTTACAAATTCAAATGT+TGG - chr2_1:67295761-67295780 None:intergenic 15.0%
!! CTTGTCAAAATTAAAAAATA+CGG - chr2_1:67297471-67297490 None:intergenic 15.0%
!! AAAAATCACTTAACTATATA+CGG - chr2_1:67297544-67297563 None:intergenic 15.0%
!! AAAGTTTAATTCAGAAAATT+TGG + chr2_1:67297809-67297828 Msa0219590:intron 15.0%
!! AAGTTTAATTCAGAAAATTT+GGG + chr2_1:67297810-67297829 Msa0219590:intron 15.0%
!! AATATTTATTTAGTTGACAA+TGG + chr2_1:67297951-67297970 Msa0219590:intron 15.0%
!! ATATATATACAGAAAAATCA+AGG - chr2_1:67298102-67298121 None:intergenic 15.0%
!!! AAAATCGAATTTTTTTTCTG+GGG - chr2_1:67295107-67295126 None:intergenic 20.0%
!!! CAAAATCGAATTTTTTTTCT+GGG - chr2_1:67295108-67295127 None:intergenic 20.0%
!!! TCAAAATCGAATTTTTTTTC+TGG - chr2_1:67295109-67295128 None:intergenic 20.0%
!!! AAAAATTCGATTTTGATTAC+TGG + chr2_1:67295113-67295132 Msa0219590:intron 20.0%
!!! AAAATTCGATTTTGATTACT+GGG + chr2_1:67295114-67295133 Msa0219590:intron 20.0%
!! TTGAAAATTGAATTTAGGAA+AGG - chr2_1:67295150-67295169 None:intergenic 20.0%
!!! GAAATCAATTTTAACTTTGA+AGG - chr2_1:67295246-67295265 None:intergenic 20.0%
!! ATCAAAATTAATCCCTATTT+AGG + chr2_1:67295277-67295296 Msa0219590:intron 20.0%
!!! TTCATTATGATATATTGACT+TGG + chr2_1:67295315-67295334 Msa0219590:intron 20.0%
!!! TCATTATGATATATTGACTT+GGG + chr2_1:67295316-67295335 Msa0219590:intron 20.0%
!!! TTTTTGTAGATCAAATTCTA+AGG + chr2_1:67295392-67295411 Msa0219590:intron 20.0%
!! AAAAAAATACCAGTAAACTT+AGG - chr2_1:67296103-67296122 None:intergenic 20.0%
!! TGTTATATAGATTTCGAATA+CGG + chr2_1:67296711-67296730 Msa0219590:intron 20.0%
!!! TATTCATTTCTTTTCTTAGT+AGG + chr2_1:67297654-67297673 Msa0219590:intron 20.0%
! AATGAATGAATGATTGTGTT+TGG - chr2_1:67294975-67294994 None:intergenic 25.0%
!!! AAATCGAATTTTTTTTCTGG+GGG - chr2_1:67295106-67295125 None:intergenic 25.0%
! CTCAGTTGAAAATTGAATTT+AGG - chr2_1:67295155-67295174 None:intergenic 25.0%
!! CTAAATTCAATTTTCAACTG+AGG + chr2_1:67295153-67295172 Msa0219590:intron 25.0%
!! CAATTTTATCACTATGATTC+TGG + chr2_1:67295195-67295214 Msa0219590:intron 25.0%
!!! ATTAATCCCTATTTAGGTTT+TGG + chr2_1:67295283-67295302 Msa0219590:intron 25.0%
!!! TTAATCCCTATTTAGGTTTT+GGG + chr2_1:67295284-67295303 Msa0219590:intron 25.0%
!!! TCTTTCTTTTTGATTTGACT+TGG + chr2_1:67295350-67295369 Msa0219590:intron 25.0%
!!! TTTTTTGTTTTGTTTGTTGC+AGG + chr2_1:67295420-67295439 Msa0219590:intron 25.0%
!! AATGGAAGCTTTTAATAAAC+AGG + chr2_1:67295537-67295556 Msa0219590:intron 25.0%
! ATTGAATATCCTAAGTTTAC+TGG + chr2_1:67296091-67296110 Msa0219590:intron 25.0%
! GCAAAAACAAAATGGTTATA+AGG - chr2_1:67296238-67296257 None:intergenic 25.0%
! TAAGTTTGGCAAAAACAAAA+TGG - chr2_1:67296246-67296265 None:intergenic 25.0%
! TTTAGTAACGGTTATAAGTT+TGG - chr2_1:67296260-67296279 None:intergenic 25.0%
!!! TTTTATGATTTTGCTGTTAC+TGG + chr2_1:67296395-67296414 Msa0219590:intron 25.0%
! ACGGAAAAAAAATAGTTAAC+CGG + chr2_1:67296730-67296749 Msa0219590:intron 25.0%
! AACACAGTTAACTTTATCAA+GGG - chr2_1:67297133-67297152 None:intergenic 25.0%
! TCACAAAGTTAAAAACACAA+GGG - chr2_1:67297207-67297226 None:intergenic 25.0%
! ATCACAAAGTTAAAAACACA+AGG - chr2_1:67297208-67297227 None:intergenic 25.0%
!!! TGCATAAGTTTTGGTTTAAT+TGG + chr2_1:67297320-67297339 Msa0219590:intron 25.0%
!! TTTTTCGTATTTTCATCTCA+TGG + chr2_1:67297559-67297578 Msa0219590:intron 25.0%
!! GAAACTTCTAATTTGCATTA+CGG - chr2_1:67297692-67297711 None:intergenic 25.0%
! AAAACTTCTTGATTTACATC+AGG + chr2_1:67297901-67297920 Msa0219590:CDS 25.0%
! TATTATTAACAGGATGATGA+TGG - chr2_1:67298282-67298301 None:intergenic 25.0%
! TGATAGCTACTATTATTAAC+AGG - chr2_1:67298292-67298311 None:intergenic 25.0%
! ACTCTTATATATATGGACAA+GGG - chr2_1:67298355-67298374 None:intergenic 25.0%
!! TAGCCTTAAAAAGTTTATCA+GGG + chr2_1:67298539-67298558 Msa0219590:three_prime_UTR 25.0%
AATATGAACTTACAGTGAGA+AGG - chr2_1:67295073-67295092 None:intergenic 30.0%
!!! AATCGAATTTTTTTTCTGGG+GGG - chr2_1:67295105-67295124 None:intergenic 30.0%
AAACACCCAAAACCTAAATA+GGG - chr2_1:67295292-67295311 None:intergenic 30.0%
TAGACAAGGTGATATTGAAA+TGG + chr2_1:67295480-67295499 Msa0219590:intron 30.0%
AGACAAGGTGATATTGAAAT+GGG + chr2_1:67295481-67295500 Msa0219590:intron 30.0%
! TTAAAAGTGAGTTGAATGTG+AGG + chr2_1:67295789-67295808 Msa0219590:intron 30.0%
TTGAATGTAACAATCACGTT+TGG + chr2_1:67295860-67295879 Msa0219590:intron 30.0%
AGAGACAAAATCAATTCCAA+TGG + chr2_1:67295931-67295950 Msa0219590:intron 30.0%
CATATTTGAGTGATTTCCAT+TGG - chr2_1:67295950-67295969 None:intergenic 30.0%
TTCATTATACCCTGTATGTT+TGG - chr2_1:67296026-67296045 None:intergenic 30.0%
! CAATTTGTTTATCAGCATCT+TGG - chr2_1:67296141-67296160 None:intergenic 30.0%
TGCTGATAAACAAATTGAGA+AGG + chr2_1:67296144-67296163 Msa0219590:CDS 30.0%
! GCAAAAAGTGCATTTAGTAA+CGG - chr2_1:67296272-67296291 None:intergenic 30.0%
!! TTACTAAATGCACTTTTTGC+AGG + chr2_1:67296272-67296291 Msa0219590:intron 30.0%
CATTGTAACAATACCTTTCA+TGG - chr2_1:67296337-67296356 None:intergenic 30.0%
AAATAGATGTGATGTCAGAA+TGG - chr2_1:67296509-67296528 None:intergenic 30.0%
TATCAAAAAGAGGATGGAAA+AGG + chr2_1:67296580-67296599 Msa0219590:CDS 30.0%
GAAAAGGATATTGATGAAGT+TGG + chr2_1:67296596-67296615 Msa0219590:CDS 30.0%
CGGAAAAAAAATAGTTAACC+GGG + chr2_1:67296731-67296750 Msa0219590:intron 30.0%
ATTCTGCATAAAACATATCC+CGG - chr2_1:67296752-67296771 None:intergenic 30.0%
!! ATCTCTGAACTTTTTAGTCA+AGG - chr2_1:67296929-67296948 None:intergenic 30.0%
TGAGATGATAGACATAAACT+TGG - chr2_1:67297010-67297029 None:intergenic 30.0%
AATACAAGATGAATATCGTG+AGG + chr2_1:67297067-67297086 Msa0219590:intron 30.0%
ACACAGTTAACTTTATCAAG+GGG - chr2_1:67297132-67297151 None:intergenic 30.0%
CAACACAGTTAACTTTATCA+AGG - chr2_1:67297134-67297153 None:intergenic 30.0%
AAACCAAAACTTATGCATAG+CGG - chr2_1:67297317-67297336 None:intergenic 30.0%
ATAAATCAAATACCTGTCCT+CGG - chr2_1:67297434-67297453 None:intergenic 30.0%
! CATTTCTTTTCTTAGTAGGA+AGG + chr2_1:67297658-67297677 Msa0219590:intron 30.0%
!!! CAATTTGTTTTTTGCTTGTG+TGG + chr2_1:67297763-67297782 Msa0219590:intron 30.0%
! TTTTCAGATTTACCTTGACA+TGG + chr2_1:67298008-67298027 Msa0219590:intron 30.0%
GTTCAATTTGCGTTAATAAG+AGG + chr2_1:67298153-67298172 Msa0219590:intron 30.0%
ATAGTAGCTATCATAGTTGT+TGG + chr2_1:67298299-67298318 Msa0219590:CDS 30.0%
CTCTTATATATATGGACAAG+GGG - chr2_1:67298354-67298373 None:intergenic 30.0%
GACTCTTATATATATGGACA+AGG - chr2_1:67298356-67298375 None:intergenic 30.0%
CAACACGACTCTTATATATA+TGG - chr2_1:67298362-67298381 None:intergenic 30.0%
CATATATATAAGAGTCGTGT+TGG + chr2_1:67298360-67298379 Msa0219590:three_prime_UTR 30.0%
! GTAGCCTTAAAAAGTTTATC+AGG + chr2_1:67298538-67298557 Msa0219590:three_prime_UTR 30.0%
! AAGCCCTGATAAACTTTTTA+AGG - chr2_1:67298545-67298564 None:intergenic 30.0%
CAATATATGTCACAAGCAAA+TGG - chr2_1:67298605-67298624 None:intergenic 30.0%
GAAACACCCAAAACCTAAAT+AGG - chr2_1:67295293-67295312 None:intergenic 35.0%
TTTGTTAGTGAGGCTAATCA+TGG + chr2_1:67295448-67295467 Msa0219590:intron 35.0%
TCAATATCACCTTGTCTAGA+AGG - chr2_1:67295478-67295497 None:intergenic 35.0%
! TCAAAGAAGCAGTTCTGATA+TGG + chr2_1:67295513-67295532 Msa0219590:intron 35.0%
! CAAAGAAGCAGTTCTGATAT+GGG + chr2_1:67295514-67295533 Msa0219590:intron 35.0%
GTATAGATACACCTCAGATT+AGG + chr2_1:67295604-67295623 Msa0219590:intron 35.0%
TAAAGTTAACTGTGTGTGTC+TGG + chr2_1:67295971-67295990 Msa0219590:intron 35.0%
! TGTATGTTTGGTTTCACAGT+AGG - chr2_1:67296014-67296033 None:intergenic 35.0%
TACTGTGAAACCAAACATAC+AGG + chr2_1:67296013-67296032 Msa0219590:intron 35.0%
ACTGTGAAACCAAACATACA+GGG + chr2_1:67296014-67296033 Msa0219590:intron 35.0%
ATGTGATGTCAGAATGGAAA+AGG - chr2_1:67296503-67296522 None:intergenic 35.0%
ATAGCTGAGAATGATGTAAG+AGG - chr2_1:67296563-67296582 None:intergenic 35.0%
CATTCTCAGCTATCAAAAAG+AGG + chr2_1:67296570-67296589 Msa0219590:intron 35.0%
AAGTTGGAAAGATTGCACAT+GGG + chr2_1:67296612-67296631 Msa0219590:CDS 35.0%
CTAAACAATAGACAAAAGCC+TGG + chr2_1:67296772-67296791 Msa0219590:CDS 35.0%
GAAAAACAGCTTCTAGTGTT+AGG - chr2_1:67296988-67297007 None:intergenic 35.0%
GTGGAAAGAAGAGTTATTAC+AGG + chr2_1:67297092-67297111 Msa0219590:intron 35.0%
AAGTTAACTGTGTTGCACTA+TGG + chr2_1:67297139-67297158 Msa0219590:intron 35.0%
TGACTTGATTCTTCAGTTAC+CGG + chr2_1:67297232-67297251 Msa0219590:intron 35.0%
! TATCCGCTATGCATAAGTTT+TGG + chr2_1:67297311-67297330 Msa0219590:intron 35.0%
ATTGATCACCTGATAGAAAC+TGG + chr2_1:67297366-67297385 Msa0219590:CDS 35.0%
TCATCTCATGGAAGAGATAT+TGG + chr2_1:67297571-67297590 Msa0219590:intron 35.0%
!! GTGTTGTTTCTTGAGCTTAA+AGG + chr2_1:67297614-67297633 Msa0219590:intron 35.0%
! TTGTTTCTTGAGCTTAAAGG+AGG + chr2_1:67297617-67297636 Msa0219590:intron 35.0%
TCCAGAAGAATTCTCGAAAA+TGG + chr2_1:67298246-67298265 Msa0219590:CDS 35.0%
!! TCCATTTTCGAGAATTCTTC+TGG - chr2_1:67298250-67298269 None:intergenic 35.0%
! TATATAAGAGTCGTGTTGGT+TGG + chr2_1:67298364-67298383 Msa0219590:three_prime_UTR 35.0%
!! ATATAAGAGTCGTGTTGGTT+GGG + chr2_1:67298365-67298384 Msa0219590:three_prime_UTR 35.0%
!! GTGTTGACTTGCTAATACAT+CGG + chr2_1:67298475-67298494 Msa0219590:three_prime_UTR 35.0%
!! CAACAAAACCAGCTTTAGAA+TGG - chr2_1:67298582-67298601 None:intergenic 35.0%
GAGAGAGAGAGAGAGTAAAA+CGG - chr2_1:67295002-67295021 None:intergenic 40.0%
! GCAGGATTCATTTGTTAGTG+AGG + chr2_1:67295438-67295457 Msa0219590:intron 40.0%
! AAGCAGTTCTGATATGGGAA+TGG + chr2_1:67295519-67295538 Msa0219590:intron 40.0%
! AAAGTGAGTTGAATGTGAGG+TGG + chr2_1:67295792-67295811 Msa0219590:intron 40.0%
! ATGTTTGGTTTCACAGTAGG+AGG - chr2_1:67296011-67296030 None:intergenic 40.0%
!!! CTTTAGCTTTTGAAGTAGCG+CGG - chr2_1:67296173-67296192 None:intergenic 40.0%
! CTTTTTGCAGGAAGCTAATG+AGG + chr2_1:67296284-67296303 Msa0219590:intron 40.0%
!! ACAAAAGCATCTGCCATGAA+AGG + chr2_1:67296321-67296340 Msa0219590:CDS 40.0%
! CTGTTACTGGTTACTGAATC+AGG + chr2_1:67296408-67296427 Msa0219590:intron 40.0%
CTCAGCTATCAAAAAGAGGA+TGG + chr2_1:67296574-67296593 Msa0219590:intron 40.0%
GAAGTTGGAAAGATTGCACA+TGG + chr2_1:67296611-67296630 Msa0219590:CDS 40.0%
AGTTGGAAAGATTGCACATG+GGG + chr2_1:67296613-67296632 Msa0219590:CDS 40.0%
CATTCTTGCTCTGTCAATAC+CGG - chr2_1:67296812-67296831 None:intergenic 40.0%
GTCAAGGAACTGCAATTTCA+AGG - chr2_1:67296913-67296932 None:intergenic 40.0%
GTGTTTCAGACTAACATACC+TGG - chr2_1:67296966-67296985 None:intergenic 40.0%
AGATGAATATCGTGAGGTTG+TGG + chr2_1:67297073-67297092 Msa0219590:intron 40.0%
ATTCTTCAGTTACCGGAACT+AGG + chr2_1:67297239-67297258 Msa0219590:intron 40.0%
ATCAAACTCACCTCATCATC+TGG - chr2_1:67297265-67297284 None:intergenic 40.0%
CACTGTTTCCAGTTTCTATC+AGG - chr2_1:67297377-67297396 None:intergenic 40.0%
TCATGGAAGAGATATTGGTG+TGG + chr2_1:67297576-67297595 Msa0219590:intron 40.0%
!! CAGAAAATTTGGGTTGTTGC+AGG + chr2_1:67297820-67297839 Msa0219590:intron 40.0%
! GAGCACTGTAGAAGAAATTC+AGG + chr2_1:67297847-67297866 Msa0219590:CDS 40.0%
TTTAGACAACATCGAAAGCC+AGG + chr2_1:67298059-67298078 Msa0219590:CDS 40.0%
! CGTTAATAAGAGGCTTGTTC+AGG + chr2_1:67298163-67298182 Msa0219590:intron 40.0%
!! TCCTTGTACCATTCTAAAGC+TGG + chr2_1:67298571-67298590 Msa0219590:three_prime_UTR 40.0%
!! ACCAGCTTTAGAATGGTACA+AGG - chr2_1:67298575-67298594 None:intergenic 40.0%
TTGTTGAGAGAGAGAGTTCG+TGG + chr2_1:67294910-67294929 Msa0219590:five_prime_UTR 45.0%
TGTTGAGAGAGAGAGTTCGT+GGG + chr2_1:67294911-67294930 Msa0219590:five_prime_UTR 45.0%
CATGGACAACCTTCTAGACA+AGG + chr2_1:67295466-67295485 Msa0219590:intron 45.0%
CGCGCTACTTCAAAAGCTAA+AGG + chr2_1:67296171-67296190 Msa0219590:CDS 45.0%
AGATCTCATGACAGAGTTCC+AGG + chr2_1:67296945-67296964 Msa0219590:intron 45.0%
AGAGATATTGGTGTGGTGAG+CGG + chr2_1:67297583-67297602 Msa0219590:intron 45.0%
CAACTAAGACTGCCATGTCA+AGG - chr2_1:67298023-67298042 None:intergenic 45.0%
! GCAGTCTTAGTTGATGCTCA+AGG + chr2_1:67298030-67298049 Msa0219590:CDS 45.0%
TTGTTGGCGTTCTCAAACCT+TGG + chr2_1:67298315-67298334 Msa0219590:CDS 45.0%
!!! TTATTTATTTAAAAAGTATA+TGG + chr2_1:67297173-67297192 Msa0219590:intron 5.0%
AACGACAGCGATGTTAAGCG+AGG - chr2_1:67294940-67294959 None:intergenic 50.0%
CATGATAGGTATCCGACACC+AGG - chr2_1:67295635-67295654 None:intergenic 50.0%
ATATGCGTCAGTGTCTGCGT+CGG - chr2_1:67295659-67295678 None:intergenic 50.0%
TGTTCGTGTCTGTGCTGCAT+AGG + chr2_1:67295728-67295747 Msa0219590:intron 50.0%
ACAAAAGCCTGGCTGTGAGA+AGG + chr2_1:67296783-67296802 Msa0219590:CDS 50.0%
CAAAAGCCTGGCTGTGAGAA+GGG + chr2_1:67296784-67296803 Msa0219590:CDS 50.0%
CTCATCATCTGGCCTAGTTC+CGG - chr2_1:67297254-67297273 None:intergenic 50.0%
CAGTGAGCAAATCTTCCAGC+AGG + chr2_1:67297392-67297411 Msa0219590:CDS 50.0%
CTGCTTCAAGAATTGCCTGC+TGG - chr2_1:67297410-67297429 None:intergenic 50.0%
CAGCAGGCAATTCTTGAAGC+AGG + chr2_1:67297408-67297427 Msa0219590:CDS 50.0%
GATGAGCGAAGACACAAACC+TGG - chr2_1:67298080-67298099 None:intergenic 50.0%
CAGTCGATCATGTCCAGAGA+GGG + chr2_1:67298195-67298214 Msa0219590:CDS 50.0%
GGGGACTAAGAACTCTTCCA+AGG - chr2_1:67298335-67298354 None:intergenic 50.0%
!! GGGAAAGCATTTGCATGCGT+CGG + chr2_1:67298385-67298404 Msa0219590:three_prime_UTR 50.0%
ACCTCAGATTAGGCGTGTCC+TGG + chr2_1:67295614-67295633 Msa0219590:intron 55.0%
ACCAGGACACGCCTAATCTG+AGG - chr2_1:67295618-67295637 None:intergenic 55.0%
GATTAGGCGTGTCCTGGTGT+CGG + chr2_1:67295620-67295639 Msa0219590:intron 55.0%
GTGTCTGCGTCGGACATGAT+AGG - chr2_1:67295649-67295668 None:intergenic 55.0%
CGGAACTAGGCCAGATGATG+AGG + chr2_1:67297252-67297271 Msa0219590:CDS 55.0%
GCAATTCTTGAAGCAGGCCG+AGG + chr2_1:67297414-67297433 Msa0219590:CDS 55.0%
GCAGTCGATCATGTCCAGAG+AGG + chr2_1:67298194-67298213 Msa0219590:CDS 55.0%
GAAGTGCAGTTGTCCCTCTC+TGG - chr2_1:67298211-67298230 None:intergenic 55.0%
! AAGCATTTGCATGCGTCGGC+AGG + chr2_1:67298389-67298408 Msa0219590:three_prime_UTR 55.0%
CGGCAGGAACATCTTAGAGC+AGG + chr2_1:67298405-67298424 Msa0219590:three_prime_UTR 55.0%
TCTTGAAGCAGGCCGAGGAC+AGG + chr2_1:67297419-67297438 Msa0219590:CDS 60.0%
! CCTGGCTGTGAGAAGGGCAC+CGG + chr2_1:67296790-67296809 Msa0219590:CDS 65.0%
CCGGTGCCCTTCTCACAGCC+AGG - chr2_1:67296793-67296812 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 67294875 67298669 67294875 ID=Msa0219590;Name=Msa0219590
chr2_1 mRNA 67294875 67298669 67294875 ID=Msa0219590-mRNA-1;Parent=Msa0219590;Name=Msa0219590-mRNA-1;_AED=0.19;_eAED=0.19;_QI=187|0.7|0.90|1|0.7|0.81|11|320|241
chr2_1 exon 67294875 67295079 67294875 ID=Msa0219590-mRNA-1:exon:19055;Parent=Msa0219590-mRNA-1
chr2_1 exon 67296136 67296192 67296136 ID=Msa0219590-mRNA-1:exon:19056;Parent=Msa0219590-mRNA-1
chr2_1 exon 67296294 67296342 67296294 ID=Msa0219590-mRNA-1:exon:19057;Parent=Msa0219590-mRNA-1
chr2_1 exon 67296579 67296667 67296579 ID=Msa0219590-mRNA-1:exon:19058;Parent=Msa0219590-mRNA-1
chr2_1 exon 67296769 67296842 67296769 ID=Msa0219590-mRNA-1:exon:19059;Parent=Msa0219590-mRNA-1
chr2_1 exon 67297165 67297187 67297165 ID=Msa0219590-mRNA-1:exon:19060;Parent=Msa0219590-mRNA-1
chr2_1 exon 67297248 67297273 67297248 ID=Msa0219590-mRNA-1:exon:19061;Parent=Msa0219590-mRNA-1
chr2_1 exon 67297363 67297440 67297363 ID=Msa0219590-mRNA-1:exon:19062;Parent=Msa0219590-mRNA-1
chr2_1 exon 67297842 67297922 67297842 ID=Msa0219590-mRNA-1:exon:19063;Parent=Msa0219590-mRNA-1
chr2_1 exon 67298015 67298080 67298015 ID=Msa0219590-mRNA-1:exon:19064;Parent=Msa0219590-mRNA-1
chr2_1 exon 67298185 67298669 67298185 ID=Msa0219590-mRNA-1:exon:19065;Parent=Msa0219590-mRNA-1
chr2_1 five_prime_UTR 67294875 67295061 67294875 ID=Msa0219590-mRNA-1:five_prime_utr;Parent=Msa0219590-mRNA-1
chr2_1 CDS 67295062 67295079 67295062 ID=Msa0219590-mRNA-1:cds;Parent=Msa0219590-mRNA-1
chr2_1 CDS 67296136 67296192 67296136 ID=Msa0219590-mRNA-1:cds;Parent=Msa0219590-mRNA-1
chr2_1 CDS 67296294 67296342 67296294 ID=Msa0219590-mRNA-1:cds;Parent=Msa0219590-mRNA-1
chr2_1 CDS 67296579 67296667 67296579 ID=Msa0219590-mRNA-1:cds;Parent=Msa0219590-mRNA-1
chr2_1 CDS 67296769 67296842 67296769 ID=Msa0219590-mRNA-1:cds;Parent=Msa0219590-mRNA-1
chr2_1 CDS 67297165 67297187 67297165 ID=Msa0219590-mRNA-1:cds;Parent=Msa0219590-mRNA-1
chr2_1 CDS 67297248 67297273 67297248 ID=Msa0219590-mRNA-1:cds;Parent=Msa0219590-mRNA-1
chr2_1 CDS 67297363 67297440 67297363 ID=Msa0219590-mRNA-1:cds;Parent=Msa0219590-mRNA-1
chr2_1 CDS 67297842 67297922 67297842 ID=Msa0219590-mRNA-1:cds;Parent=Msa0219590-mRNA-1
chr2_1 CDS 67298015 67298080 67298015 ID=Msa0219590-mRNA-1:cds;Parent=Msa0219590-mRNA-1
chr2_1 CDS 67298185 67298349 67298185 ID=Msa0219590-mRNA-1:cds;Parent=Msa0219590-mRNA-1
chr2_1 three_prime_UTR 67298350 67298669 67298350 ID=Msa0219590-mRNA-1:three_prime_utr;Parent=Msa0219590-mRNA-1
Gene Sequence

>Msa0219590

ATGAACGACCTTCTCACTATCCAAGATGCTGATAAACAAATTGAGAAGGTGTCCGCGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCATCTGCCATGAAAGCTATCAAAAAGAGGATGGAAAAGGATATTGATGAAGTTGGAAAGATTGCACATGGGGTCAAAGCAAAAATTGAAGCTATCAATAGAGAAAATCTAAACAATAGACAAAAGCCTGGCTGTGAGAAGGGCACCGGTATTGACAGAGCAAGAATGAATATGACAAATACTATAGTTATTTATTTAAAAATTACCGGAACTAGGCCAGATGATGAGACGATTGATCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGCAGGCAATTCTTGAAGCAGGCCGAGGACAGGTCGTGAGCACTGTAGAAGAAATTCAGGAGAGACATGATGCTGTCAAAGAAATTGAGAAAAAACTTCTTGATTTACATCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGACAACATCGAAAGCCAGGTCAACAATGCAGTCGATCATGTCCAGAGAGGGACAACTGCACTTCAAAGTGCTAAGAAACTCCAGAAGAATTCTCGAAAATGGATGTGCATTGCCATCATCATCCTGTTAATAATAGTAGCTATCATAGTTGTTGGCGTTCTCAAACCTTGGAAGAGTTCTTAG

Protein sequence

>Msa0219590

MNDLLTIQDADKQIEKVSALLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAHGVKAKIEAINRENLNNRQKPGCEKGTGIDRARMNMTNTIVIYLKITGTRPDDETIDHLIETGNSEQIFQQAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQSAKKLQKNSRKWMCIAIIILLIIVAIIVVGVLKPWKSS*