AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0964310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964310 MtrunA17_Chr6g0484451 91.493 529 27 5 1 517 1 523 0.0 857
Msa0964310 MtrunA17_Chr8g0391071 57.353 612 196 14 1 597 1 562 0.0 587
Msa0964310 MtrunA17_Chr4g0000281 40.125 319 166 11 294 596 115 424 9.38e-59 202
Msa0964310 MtrunA17_Chr6g0484461 96.386 83 3 0 516 598 8 90 1.54e-49 166
Msa0964310 MtrunA17_Chr7g0217181 29.912 341 204 10 285 597 412 745 2.73e-33 135
Msa0964310 MtrunA17_Chr5g0417111 29.538 325 189 11 299 596 597 908 3.55e-28 120
Msa0964310 MtrunA17_Chr8g0361681 29.880 251 161 5 359 596 587 835 5.36e-25 110
Msa0964310 MtrunA17_Chr8g0361691 28.671 143 92 4 359 497 11 147 1.32e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964310 AT1G73850.2 48.855 655 258 18 1 598 1 635 5.14e-163 480
Msa0964310 AT1G73850.1 48.855 655 258 18 1 598 1 635 5.14e-163 480
Msa0964310 AT3G20260.1 38.700 323 175 8 294 596 117 436 1.30e-55 194
Msa0964310 AT5G39785.1 31.274 259 155 6 359 596 349 605 4.70e-27 116
Msa0964310 AT5G39785.3 31.274 259 155 6 359 596 349 605 4.70e-27 116
Msa0964310 AT5G39785.5 31.274 259 155 6 359 596 349 605 4.70e-27 116
Msa0964310 AT5G39785.2 31.179 263 151 7 359 596 349 606 7.56e-26 112
Msa0964310 AT1G69610.3 29.582 311 187 9 295 579 270 574 2.21e-24 108
Msa0964310 AT1G69610.2 29.582 311 187 9 295 579 315 619 3.92e-24 107
Msa0964310 AT1G69610.1 29.582 311 187 9 295 579 314 618 4.01e-24 107
Msa0964310 AT5G39785.4 28.322 286 153 7 359 596 349 630 4.17e-24 107
Msa0964310 AT3G01175.1 26.087 391 226 12 247 597 209 576 7.93e-18 87.4

Find 106 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCGTAAGATTCCCATTT+TGG 0.147178 6_3:-90737153 None:intergenic
TCAATTATTTGTAGAGATTC+TGG 0.189000 6_3:+90737099 Msa0964310:CDS
TAACATGGGAAGCACTTAAT+TGG 0.198782 6_3:+90738066 Msa0964310:CDS
CTTGTACCTTCCTTTGTCTT+TGG 0.209501 6_3:-90740229 None:intergenic
GTAATTGTACCTCGATATTC+AGG 0.210210 6_3:-90738278 None:intergenic
CAAGAAGAAGTTGTCCAAAA+TGG 0.218903 6_3:+90737139 Msa0964310:CDS
GAGTAGCATATGGAATATTT+TGG 0.265470 6_3:+90740133 Msa0964310:three_prime_UTR
TTAGTAGCTGATATAGTTTA+TGG 0.270943 6_3:+90736211 Msa0964310:CDS
GGTCCTTTCCGTATCCATTA+AGG 0.282693 6_3:-90740423 None:intergenic
AGCTTCATTTCTTGTGATAA+TGG 0.291025 6_3:+90739061 Msa0964310:CDS
GATGATCAGAAGGAGAATAT+TGG 0.307291 6_3:+90739017 Msa0964310:CDS
TATGTTTCACTTTGATTTGT+AGG 0.317438 6_3:-90740106 None:intergenic
AATAAAGGAATGGTAGGTTT+AGG 0.317969 6_3:+90740390 Msa0964310:three_prime_UTR
GTAGCTCCAAGGTCAATTTC+AGG 0.324497 6_3:+90737942 Msa0964310:CDS
CACTATTGGCTCAACATCTA+AGG 0.332326 6_3:+90737056 Msa0964310:CDS
GCAGAAGAAGATAAAGATTA+AGG 0.334262 6_3:+90739721 Msa0964310:intron
GCAGCCTCCAATTCACAATA+TGG 0.342594 6_3:-90738023 None:intergenic
ATGATCAGAAGGAGAATATT+GGG 0.345161 6_3:+90739018 Msa0964310:CDS
GAGAATGAACCTTATGAGTT+TGG 0.345523 6_3:+90738197 Msa0964310:CDS
GGATTGTGACTTATATCTTC+TGG 0.349354 6_3:-90738002 None:intergenic
AAATATGGAAGTAAAGAAAA+TGG 0.349870 6_3:+90740075 Msa0964310:three_prime_UTR
ATCAACATTTGATGCTCGTT+TGG 0.350427 6_3:-90738108 None:intergenic
AACTGTTGCGCAATTGTTGC+TGG 0.354425 6_3:-90738140 None:intergenic
CTTGAAGGAGGAAGAAGAAA+TGG 0.370058 6_3:+90739781 Msa0964310:CDS
TGTAAATTAATATTGCTTCA+TGG 0.372040 6_3:+90739988 Msa0964310:three_prime_UTR
ATATGCATTCATGCATATAA+AGG 0.372778 6_3:+90740022 Msa0964310:three_prime_UTR
GCACAAAAGCTTCATGAAAC+TGG 0.382594 6_3:+90737222 Msa0964310:CDS
TAAAGTAGAGCACACAATAA+AGG 0.384818 6_3:+90740375 Msa0964310:three_prime_UTR
AAAGATGATGAAGAGATATA+TGG 0.394408 6_3:+90737024 Msa0964310:CDS
AGTAGCTACTAATGAAGTTA+AGG 0.396569 6_3:-90735970 None:intergenic
TCACAATCCATATTGTGAAT+TGG 0.401197 6_3:+90738016 Msa0964310:CDS
TGTGATTGGTCCTACACAAT+TGG 0.408052 6_3:+90736972 Msa0964310:CDS
TACAAACTTTCAGTTGAAGT+TGG 0.409551 6_3:-90736364 None:intergenic
GTAAATTAATATTGCTTCAT+GGG 0.415109 6_3:+90739989 Msa0964310:three_prime_UTR
AAGAAATGTCATTTCTAGAA+AGG 0.415445 6_3:+90737193 Msa0964310:CDS
GTCTCAAAATCTGAAACAAT+TGG 0.415879 6_3:-90736403 None:intergenic
TTGTATAGGTTAACTGTGAT+AGG 0.416462 6_3:-90736514 None:intergenic
TATGGTGATACAACCACTAT+TGG 0.420091 6_3:+90737042 Msa0964310:CDS
TTGAAGTAGAAAAGAGAAAG+AGG 0.433188 6_3:-90735931 None:intergenic
TTTAAAAGACGGATTAATGT+TGG 0.441489 6_3:-90739188 None:intergenic
TTTAAAGAAAGTTAATCAAA+AGG 0.445739 6_3:+90739205 Msa0964310:CDS
AAGAAGAAGTTGTCCAAAAT+GGG 0.445917 6_3:+90737140 Msa0964310:CDS
TTTCTTGTGATAATGGAAGA+TGG 0.449843 6_3:+90739068 Msa0964310:CDS
TATGAAATTCATGGAAAGAT+GGG 0.458331 6_3:+90740158 Msa0964310:three_prime_UTR
ATTCTATTCCAATTGAAAAG+AGG 0.460919 6_3:+90736479 Msa0964310:CDS
ATGTTTCACTTTGATTTGTA+GGG 0.464629 6_3:-90740105 None:intergenic
CTTAGATGTTGAGCCAATAG+TGG 0.464943 6_3:-90737055 None:intergenic
AGCAAAGTGAGAGTCATAGA+TGG 0.467717 6_3:+90739902 Msa0964310:CDS
TCAGGGACTAGGAGCAACTT+TGG 0.470020 6_3:-90738260 None:intergenic
CTCATTCTAGCATAAATCTC+TGG 0.472752 6_3:-90738227 None:intergenic
TTATTTCTCTCCAATTGTGT+AGG 0.473744 6_3:-90736982 None:intergenic
CATCTAAGGACTCTTCTGAT+TGG 0.477906 6_3:+90737070 Msa0964310:CDS
CTTGAGGAAGAGAAACTTGA+AGG 0.482470 6_3:+90739766 Msa0964310:CDS
TTAATGATACAAGTCCTAGC+TGG 0.485392 6_3:-90740483 None:intergenic
AACATATGTGGAGTAGCATA+TGG 0.488821 6_3:+90740123 Msa0964310:three_prime_UTR
GTATGAAATTCATGGAAAGA+TGG 0.492733 6_3:+90740157 Msa0964310:three_prime_UTR
TTGCACAAATTTGCTTAACA+TGG 0.498853 6_3:+90738051 Msa0964310:CDS
TAGATTTAAAAGTGGTGTCA+AGG 0.506032 6_3:+90739822 Msa0964310:CDS
GCTTAGTGGATGAAGTACTT+TGG 0.507883 6_3:+90735799 None:intergenic
TTATGCTAGAATGAGGCATA+TGG 0.512293 6_3:+90738235 Msa0964310:CDS
GGTCTCCTACCAAACTCATA+AGG 0.512862 6_3:-90738206 None:intergenic
GATTAACTTTCTTTAAAAGA+CGG 0.520863 6_3:-90739199 None:intergenic
CAATCCATATTGTGAATTGG+AGG 0.524173 6_3:+90738019 Msa0964310:CDS
ATTCTCCCTGAAATTGACCT+TGG 0.525426 6_3:-90737948 None:intergenic
ATTCATGGAAAGATGGGTAA+AGG 0.525802 6_3:+90740164 Msa0964310:three_prime_UTR
GTAGCTACTCTTTATTCCAA+AGG 0.527051 6_3:+90735984 Msa0964310:CDS
TCGTAGAAATCAAAGAGGCT+TGG 0.527566 6_3:+90739160 Msa0964310:CDS
ATGAACCTTATGAGTTTGGT+AGG 0.530017 6_3:+90738201 Msa0964310:CDS
TAGCTCCAAGGTCAATTTCA+GGG 0.532390 6_3:+90737943 Msa0964310:CDS
GTAGCTGATATAGTTTATGG+TGG 0.535251 6_3:+90736214 Msa0964310:CDS
AGATTTAAAAGTGGTGTCAA+GGG 0.538293 6_3:+90739823 Msa0964310:CDS
AATATATCAACTACCCAGCT+AGG 0.561327 6_3:+90740469 Msa0964310:three_prime_UTR
AGAATCAGATGATGATCAGA+AGG 0.565291 6_3:+90739007 Msa0964310:intron
ATAGTAACAATAAGTCTCAA+AGG 0.565342 6_3:+90736257 Msa0964310:CDS
AAATCAAAGTGAAACATATG+TGG 0.565389 6_3:+90740111 Msa0964310:three_prime_UTR
CAGAGATTTATGCTAGAATG+AGG 0.571884 6_3:+90738228 Msa0964310:CDS
GCACACAATAAAGGAATGGT+AGG 0.573149 6_3:+90740384 Msa0964310:three_prime_UTR
TTTCCTTAATGGATACGGAA+AGG 0.574701 6_3:+90740420 Msa0964310:three_prime_UTR
AGAGCTTCTTCTTTAGAACA+TGG 0.576720 6_3:-90735863 None:intergenic
TAATGATACAAGTCCTAGCT+GGG 0.577000 6_3:-90740482 None:intergenic
AACATTCATGAATTTCCTCA+AGG 0.579977 6_3:+90739097 Msa0964310:CDS
TAATTGTACCTCGATATTCA+GGG 0.581514 6_3:-90738277 None:intergenic
AACTGTGATAGGAGGAGAAG+TGG 0.582918 6_3:-90736503 None:intergenic
GAAAGACCAAAGACAAAGGA+AGG 0.584518 6_3:+90740223 Msa0964310:three_prime_UTR
GGCATTGATAGATTTAAAAG+TGG 0.584753 6_3:+90739814 Msa0964310:CDS
GGAAGTAAAGAAAATGGAGA+AGG 0.585584 6_3:+90740081 Msa0964310:three_prime_UTR
CGAGCATCAAATGTTGATGT+TGG 0.585634 6_3:+90738113 Msa0964310:CDS
TGCACAAATTTGCTTAACAT+GGG 0.586140 6_3:+90738052 Msa0964310:CDS
GTTTCTCTTTATCAGCCTTG+AGG 0.587313 6_3:-90739112 None:intergenic
TACCTCGATATTCAGGGACT+AGG 0.588940 6_3:-90738271 None:intergenic
TATAGGTTAACTGTGATAGG+AGG 0.592053 6_3:-90736511 None:intergenic
TGAATGAAAATCAATTACAT+TGG 0.596670 6_3:+90739864 Msa0964310:CDS
TAGAGCACACAATAAAGGAA+TGG 0.601855 6_3:+90740380 Msa0964310:three_prime_UTR
TTCTACGAAAGTAAGATGCA+AGG 0.609967 6_3:-90739145 None:intergenic
TACTTTCGTAGAAATCAAAG+AGG 0.610424 6_3:+90739155 Msa0964310:CDS
AATTAATATTGCTTCATGGG+TGG 0.612724 6_3:+90739992 Msa0964310:three_prime_UTR
GACGCTCACACAAATGCTTG+AGG 0.613037 6_3:+90739750 Msa0964310:CDS
TTGAGCAAGAGTGAAGCACA+TGG 0.616219 6_3:+90740319 Msa0964310:three_prime_UTR
AAAGATGGGTAAAGGTGAAG+AGG 0.625984 6_3:+90740172 Msa0964310:three_prime_UTR
GATCTATCAAAGTAGCTCCA+AGG 0.637964 6_3:+90737931 Msa0964310:CDS
TTAATGGATACGGAAAGGAC+CGG 0.646657 6_3:+90740425 Msa0964310:three_prime_UTR
AAGTGAAAGACCAAAGACAA+AGG 0.666104 6_3:+90740219 Msa0964310:three_prime_UTR
CTCCTAGTCCCTGAATATCG+AGG 0.670680 6_3:+90738269 Msa0964310:CDS
TAAGATGCAAGGATCTGACA+TGG 0.678566 6_3:-90739134 None:intergenic
TCTTCAATGAAGCTATCTCG+AGG 0.682772 6_3:-90736319 None:intergenic
GAGGAAGAGAAACTTGAAGG+AGG 0.683685 6_3:+90739769 Msa0964310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTCAAATATATTTTTATT+TGG + chr6_3:90737621-90737640 Msa0964310:intron 10.0%
!!! TTATTTGAAATTTTAATAAG+TGG - chr6_3:90738560-90738579 None:intergenic 10.0%
!!! TTTTATAATTTAAAATATCG+AGG + chr6_3:90739468-90739487 Msa0964310:intron 10.0%
!! TTATTTATTTGTATACATAT+TGG + chr6_3:90739629-90739648 Msa0964310:intron 10.0%
!! AAATATCAGAAAATTAAGAA+AGG - chr6_3:90737259-90737278 None:intergenic 15.0%
!! GAAGAAATAATATTATAATG+TGG - chr6_3:90737606-90737625 None:intergenic 15.0%
!!! CATAATATTTTAATAGAACT+TGG - chr6_3:90738334-90738353 None:intergenic 15.0%
!! CAAGTTCTATTAAAATATTA+TGG + chr6_3:90738332-90738351 Msa0964310:intron 15.0%
!! TTTAAAGAAAGTTAATCAAA+AGG + chr6_3:90739205-90739224 Msa0964310:CDS 15.0%
!! TATACAAGTACTATATAATT+AGG - chr6_3:90739237-90739256 None:intergenic 15.0%
!! ATAAAATGAAATTTATGATG+TGG - chr6_3:90739288-90739307 None:intergenic 15.0%
!!! TAACATACTTTTTGTAAATA+TGG + chr6_3:90740060-90740079 Msa0964310:three_prime_UTR 15.0%
!! ACATAAATTAAATTGACACA+TGG - chr6_3:90736746-90736765 None:intergenic 20.0%
!! AAAAATTGTAACTAAGTAGT+TGG + chr6_3:90737718-90737737 Msa0964310:intron 20.0%
!!! ATATTTTAATAGAACTTGGA+AGG - chr6_3:90738330-90738349 None:intergenic 20.0%
!!! TTTCTAGATATGTGATTTTT+TGG + chr6_3:90738623-90738642 Msa0964310:intron 20.0%
!! ATTGAAAAACTATTTAACTG+TGG - chr6_3:90738684-90738703 None:intergenic 20.0%
!!! GTTAAATAGTTTTTCAATTG+TGG + chr6_3:90738686-90738705 Msa0964310:intron 20.0%
!! AGCATTATTAAACAATTTGT+AGG + chr6_3:90738771-90738790 Msa0964310:intron 20.0%
!! GCATTATTAAACAATTTGTA+GGG + chr6_3:90738772-90738791 Msa0964310:intron 20.0%
!! CATTATTAAACAATTTGTAG+GGG + chr6_3:90738773-90738792 Msa0964310:intron 20.0%
!!! GATTAACTTTCTTTAAAAGA+CGG - chr6_3:90739202-90739221 None:intergenic 20.0%
!!! AATCATATTAGTTTTCTCTT+TGG + chr6_3:90739256-90739275 Msa0964310:intron 20.0%
!! TGAATGAAAATCAATTACAT+TGG + chr6_3:90739864-90739883 Msa0964310:CDS 20.0%
!!! TTTACATAAACCTTTTTTGT+GGG - chr6_3:90739974-90739993 None:intergenic 20.0%
!!! ATTTACATAAACCTTTTTTG+TGG - chr6_3:90739975-90739994 None:intergenic 20.0%
!! TGTAAATTAATATTGCTTCA+TGG + chr6_3:90739988-90740007 Msa0964310:three_prime_UTR 20.0%
!! GTAAATTAATATTGCTTCAT+GGG + chr6_3:90739989-90740008 Msa0964310:three_prime_UTR 20.0%
!! AAATATGGAAGTAAAGAAAA+TGG + chr6_3:90740075-90740094 Msa0964310:three_prime_UTR 20.0%
!!! CTTTAGCTTTTTTGATTTTA+GGG + chr6_3:90740280-90740299 Msa0964310:three_prime_UTR 20.0%
!!! TAGGTTTTTTTTTTCCTTAA+TGG + chr6_3:90740409-90740428 Msa0964310:three_prime_UTR 20.0%
!!! TTTTTTTTCCTTAATGGATA+CGG + chr6_3:90740415-90740434 Msa0964310:three_prime_UTR 20.0%
! GTAGCAATAATAATAACCTT+TGG - chr6_3:90736003-90736022 None:intergenic 25.0%
! TTAGTAGCTGATATAGTTTA+TGG + chr6_3:90736211-90736230 Msa0964310:CDS 25.0%
! ATAGTAACAATAAGTCTCAA+AGG + chr6_3:90736257-90736276 Msa0964310:CDS 25.0%
! ATTCTATTCCAATTGAAAAG+AGG + chr6_3:90736479-90736498 Msa0964310:CDS 25.0%
! ATTATGTTTGGTATTTGTGT+CGG + chr6_3:90736785-90736804 Msa0964310:intron 25.0%
! AAAGATGATGAAGAGATATA+TGG + chr6_3:90737024-90737043 Msa0964310:CDS 25.0%
! TCAATTATTTGTAGAGATTC+TGG + chr6_3:90737099-90737118 Msa0964310:CDS 25.0%
!! AAGAAATGTCATTTCTAGAA+AGG + chr6_3:90737193-90737212 Msa0964310:CDS 25.0%
! CTAACGTTCAAGATATATTA+TGG + chr6_3:90737351-90737370 Msa0964310:intron 25.0%
!! TCTTTTATAAATCATGACCA+AGG + chr6_3:90738594-90738613 Msa0964310:intron 25.0%
! ATATCTAGAAATTATGTCCT+TGG - chr6_3:90738614-90738633 None:intergenic 25.0%
!!! GATTTTTTGGAGGAAAAAAT+AGG + chr6_3:90738636-90738655 Msa0964310:intron 25.0%
! TAATAATGCTTCACACTAAT+GGG - chr6_3:90738761-90738780 None:intergenic 25.0%
! TTAATAATGCTTCACACTAA+TGG - chr6_3:90738762-90738781 None:intergenic 25.0%
!!! TTTAAAAGACGGATTAATGT+TGG - chr6_3:90739191-90739210 None:intergenic 25.0%
!! TTCTAATGTGGACTTTTTAA+AGG + chr6_3:90739354-90739373 Msa0964310:intron 25.0%
!!! TGGACTTTTTAAAGGAAATT+CGG + chr6_3:90739362-90739381 Msa0964310:intron 25.0%
! TACCATCATACTATGTTTAA+TGG + chr6_3:90739654-90739673 Msa0964310:intron 25.0%
! ATCCATTAAACATAGTATGA+TGG - chr6_3:90739659-90739678 None:intergenic 25.0%
! ATATGCATTCATGCATATAA+AGG + chr6_3:90740022-90740041 Msa0964310:three_prime_UTR 25.0%
!!! ATGTTTCACTTTGATTTGTA+GGG - chr6_3:90740108-90740127 None:intergenic 25.0%
!!! TATGTTTCACTTTGATTTGT+AGG - chr6_3:90740109-90740128 None:intergenic 25.0%
! AAATCAAAGTGAAACATATG+TGG + chr6_3:90740111-90740130 Msa0964310:three_prime_UTR 25.0%
!!! ATTTTGGAGTATGAAATTCA+TGG + chr6_3:90740149-90740168 Msa0964310:three_prime_UTR 25.0%
! TATGAAATTCATGGAAAGAT+GGG + chr6_3:90740158-90740177 Msa0964310:three_prime_UTR 25.0%
!!! GCTTTAGCTTTTTTGATTTT+AGG + chr6_3:90740279-90740298 Msa0964310:three_prime_UTR 25.0%
! TTTCTCTTTCAAAAACTAAC+CGG - chr6_3:90740447-90740466 None:intergenic 25.0%
TTGAAGTAGAAAAGAGAAAG+AGG - chr6_3:90735934-90735953 None:intergenic 30.0%
AGTAGCTACTAATGAAGTTA+AGG - chr6_3:90735973-90735992 None:intergenic 30.0%
AATGAGAAAAGAAACTAGAG+AGG - chr6_3:90736030-90736049 None:intergenic 30.0%
TACAAACTTTCAGTTGAAGT+TGG - chr6_3:90736367-90736386 None:intergenic 30.0%
! GTCTCAAAATCTGAAACAAT+TGG - chr6_3:90736406-90736425 None:intergenic 30.0%
TTGTATAGGTTAACTGTGAT+AGG - chr6_3:90736517-90736536 None:intergenic 30.0%
!! CTAAGTCATCACTTTTGTAT+AGG - chr6_3:90736531-90736550 None:intergenic 30.0%
GGTGTTTCATTGATGTTAAA+TGG + chr6_3:90736855-90736874 Msa0964310:intron 30.0%
! TTATTTCTCTCCAATTGTGT+AGG - chr6_3:90736985-90737004 None:intergenic 30.0%
AAGAAGAAGTTGTCCAAAAT+GGG + chr6_3:90737140-90737159 Msa0964310:CDS 30.0%
TCACAATCCATATTGTGAAT+TGG + chr6_3:90738016-90738035 Msa0964310:CDS 30.0%
! TTGCACAAATTTGCTTAACA+TGG + chr6_3:90738051-90738070 Msa0964310:CDS 30.0%
! TGCACAAATTTGCTTAACAT+GGG + chr6_3:90738052-90738071 Msa0964310:CDS 30.0%
TAATTGTACCTCGATATTCA+GGG - chr6_3:90738280-90738299 None:intergenic 30.0%
!!! CTAGATATGTGATTTTTTGG+AGG + chr6_3:90738626-90738645 Msa0964310:intron 30.0%
ATTATATATTGCCAACCCAT+TGG + chr6_3:90738717-90738736 Msa0964310:intron 30.0%
AATAATGCTTCACACTAATG+GGG - chr6_3:90738760-90738779 None:intergenic 30.0%
ATGATCAGAAGGAGAATATT+GGG + chr6_3:90739018-90739037 Msa0964310:CDS 30.0%
AGCTTCATTTCTTGTGATAA+TGG + chr6_3:90739061-90739080 Msa0964310:CDS 30.0%
!! TTTCTTGTGATAATGGAAGA+TGG + chr6_3:90739068-90739087 Msa0964310:CDS 30.0%
AACATTCATGAATTTCCTCA+AGG + chr6_3:90739097-90739116 Msa0964310:CDS 30.0%
TACTTTCGTAGAAATCAAAG+AGG + chr6_3:90739155-90739174 Msa0964310:CDS 30.0%
GTGCAGACAAAATATATGTT+AGG - chr6_3:90739320-90739339 None:intergenic 30.0%
AACATATTAGGCTTCTAATG+TGG + chr6_3:90739342-90739361 Msa0964310:intron 30.0%
ATAGACAGAGATGCTTTAAT+AGG - chr6_3:90739584-90739603 None:intergenic 30.0%
GCAGAAGAAGATAAAGATTA+AGG + chr6_3:90739721-90739740 Msa0964310:intron 30.0%
! AGAAGAAATGGAGATTTTGA+TGG + chr6_3:90739793-90739812 Msa0964310:CDS 30.0%
!! GGCATTGATAGATTTAAAAG+TGG + chr6_3:90739814-90739833 Msa0964310:CDS 30.0%
! TAGATTTAAAAGTGGTGTCA+AGG + chr6_3:90739822-90739841 Msa0964310:CDS 30.0%
! AGATTTAAAAGTGGTGTCAA+GGG + chr6_3:90739823-90739842 Msa0964310:CDS 30.0%
AATTAATATTGCTTCATGGG+TGG + chr6_3:90739992-90740011 Msa0964310:three_prime_UTR 30.0%
! GAGTAGCATATGGAATATTT+TGG + chr6_3:90740133-90740152 Msa0964310:three_prime_UTR 30.0%
GTATGAAATTCATGGAAAGA+TGG + chr6_3:90740157-90740176 Msa0964310:three_prime_UTR 30.0%
TAAAGTAGAGCACACAATAA+AGG + chr6_3:90740375-90740394 Msa0964310:three_prime_UTR 30.0%
AATAAAGGAATGGTAGGTTT+AGG + chr6_3:90740390-90740409 Msa0964310:three_prime_UTR 30.0%
!! AGAGCTTCTTCTTTAGAACA+TGG - chr6_3:90735866-90735885 None:intergenic 35.0%
GTAGCTACTCTTTATTCCAA+AGG + chr6_3:90735984-90736003 Msa0964310:CDS 35.0%
GTAGCTGATATAGTTTATGG+TGG + chr6_3:90736214-90736233 Msa0964310:CDS 35.0%
TATAGGTTAACTGTGATAGG+AGG - chr6_3:90736514-90736533 None:intergenic 35.0%
GAGAGTGACAAAAACTATGA+TGG + chr6_3:90736553-90736572 Msa0964310:CDS 35.0%
GTCTGTGTCAGTATTATGTT+TGG + chr6_3:90736773-90736792 Msa0964310:intron 35.0%
TCTTATGTTCGTGTCTGTAT+CGG + chr6_3:90736834-90736853 Msa0964310:intron 35.0%
ACAAAAACACTCTCATCTCT+TGG - chr6_3:90736955-90736974 None:intergenic 35.0%
!!! GATGAGAGTGTTTTTGTGAT+TGG + chr6_3:90736958-90736977 Msa0964310:CDS 35.0%
TATGGTGATACAACCACTAT+TGG + chr6_3:90737042-90737061 Msa0964310:CDS 35.0%
CAAGAAGAAGTTGTCCAAAA+TGG + chr6_3:90737139-90737158 Msa0964310:CDS 35.0%
TTAATAAGCTGAATCTCTCG+CGG + chr6_3:90737290-90737309 Msa0964310:intron 35.0%
GAGAATTTGACCAAAGATTG+AGG - chr6_3:90737316-90737335 None:intergenic 35.0%
! TTAATCCAACGACTGAGTTT+TGG + chr6_3:90737381-90737400 Msa0964310:intron 35.0%
! TGTCGACAAGTTGAACATTA+TGG - chr6_3:90737459-90737478 None:intergenic 35.0%
TTGTCTCTCCAATGAAACTT+CGG + chr6_3:90737493-90737512 Msa0964310:intron 35.0%
TTCAACAACCGAAGTTTCAT+TGG - chr6_3:90737504-90737523 None:intergenic 35.0%
!!! TTGAGAGTGTTTTATCTCGA+CGG + chr6_3:90737536-90737555 Msa0964310:intron 35.0%
TCACTTAAGAACGAAACTTC+AGG + chr6_3:90737761-90737780 Msa0964310:intron 35.0%
CACTTAAGAACGAAACTTCA+GGG + chr6_3:90737762-90737781 Msa0964310:intron 35.0%
ACTTAAGAACGAAACTTCAG+GGG + chr6_3:90737763-90737782 Msa0964310:intron 35.0%
GGATTGTGACTTATATCTTC+TGG - chr6_3:90738005-90738024 None:intergenic 35.0%
CAATCCATATTGTGAATTGG+AGG + chr6_3:90738019-90738038 Msa0964310:CDS 35.0%
!! TAACATGGGAAGCACTTAAT+TGG + chr6_3:90738066-90738085 Msa0964310:CDS 35.0%
ATCAACATTTGATGCTCGTT+TGG - chr6_3:90738111-90738130 None:intergenic 35.0%
GAGAATGAACCTTATGAGTT+TGG + chr6_3:90738197-90738216 Msa0964310:CDS 35.0%
ATGAACCTTATGAGTTTGGT+AGG + chr6_3:90738201-90738220 Msa0964310:CDS 35.0%
CTCATTCTAGCATAAATCTC+TGG - chr6_3:90738230-90738249 None:intergenic 35.0%
CAGAGATTTATGCTAGAATG+AGG + chr6_3:90738228-90738247 Msa0964310:CDS 35.0%
TTATGCTAGAATGAGGCATA+TGG + chr6_3:90738235-90738254 Msa0964310:CDS 35.0%
GTAATTGTACCTCGATATTC+AGG - chr6_3:90738281-90738300 None:intergenic 35.0%
AGAATCAGATGATGATCAGA+AGG + chr6_3:90739007-90739026 Msa0964310:intron 35.0%
GATGATCAGAAGGAGAATAT+TGG + chr6_3:90739017-90739036 Msa0964310:CDS 35.0%
TTCTACGAAAGTAAGATGCA+AGG - chr6_3:90739148-90739167 None:intergenic 35.0%
TTGTCTGCACTCAACATATT+AGG + chr6_3:90739330-90739349 Msa0964310:intron 35.0%
AGATTCCACATTCATGTAGT+CGG + chr6_3:90739393-90739412 Msa0964310:intron 35.0%
AATAGGATCAGACTTCTTTG+CGG - chr6_3:90739567-90739586 None:intergenic 35.0%
! CAATGTGATGGGAAAAAAAG+TGG - chr6_3:90739950-90739969 None:intergenic 35.0%
! TTTTTGTGGGTCAATGTGAT+GGG - chr6_3:90739961-90739980 None:intergenic 35.0%
!!! TTTTTTGTGGGTCAATGTGA+TGG - chr6_3:90739962-90739981 None:intergenic 35.0%
ATCACATTGACCCACAAAAA+AGG + chr6_3:90739961-90739980 Msa0964310:exon 35.0%
GGAAGTAAAGAAAATGGAGA+AGG + chr6_3:90740081-90740100 Msa0964310:three_prime_UTR 35.0%
AACATATGTGGAGTAGCATA+TGG + chr6_3:90740123-90740142 Msa0964310:three_prime_UTR 35.0%
ATTCATGGAAAGATGGGTAA+AGG + chr6_3:90740164-90740183 Msa0964310:three_prime_UTR 35.0%
AAGTGAAAGACCAAAGACAA+AGG + chr6_3:90740219-90740238 Msa0964310:three_prime_UTR 35.0%
TAGAGCACACAATAAAGGAA+TGG + chr6_3:90740380-90740399 Msa0964310:three_prime_UTR 35.0%
! TTTCCTTAATGGATACGGAA+AGG + chr6_3:90740420-90740439 Msa0964310:three_prime_UTR 35.0%
AATATATCAACTACCCAGCT+AGG + chr6_3:90740469-90740488 Msa0964310:three_prime_UTR 35.0%
TAATGATACAAGTCCTAGCT+GGG - chr6_3:90740485-90740504 None:intergenic 35.0%
TTAATGATACAAGTCCTAGC+TGG - chr6_3:90740486-90740505 None:intergenic 35.0%
TCTTCAATGAAGCTATCTCG+AGG - chr6_3:90736322-90736341 None:intergenic 40.0%
! GAAGTGGTCCTCTTTTCAAT+TGG - chr6_3:90736490-90736509 None:intergenic 40.0%
AAAATTGTGTCTGGTGTCTC+AGG + chr6_3:90736811-90736830 Msa0964310:intron 40.0%
! TGTGATTGGTCCTACACAAT+TGG + chr6_3:90736972-90736991 Msa0964310:CDS 40.0%
CTTAGATGTTGAGCCAATAG+TGG - chr6_3:90737058-90737077 None:intergenic 40.0%
!! CACTATTGGCTCAACATCTA+AGG + chr6_3:90737056-90737075 Msa0964310:CDS 40.0%
CATCTAAGGACTCTTCTGAT+TGG + chr6_3:90737070-90737089 Msa0964310:CDS 40.0%
! ACTGCGTAAGATTCCCATTT+TGG - chr6_3:90737156-90737175 None:intergenic 40.0%
GCACAAAAGCTTCATGAAAC+TGG + chr6_3:90737222-90737241 Msa0964310:CDS 40.0%
GATCTATCAAAGTAGCTCCA+AGG + chr6_3:90737931-90737950 Msa0964310:CDS 40.0%
TAGCTCCAAGGTCAATTTCA+GGG + chr6_3:90737943-90737962 Msa0964310:CDS 40.0%
ATTCTCCCTGAAATTGACCT+TGG - chr6_3:90737951-90737970 None:intergenic 40.0%
CGAGCATCAAATGTTGATGT+TGG + chr6_3:90738113-90738132 Msa0964310:CDS 40.0%
! ATATTGCCAACCCATTGGTT+AGG + chr6_3:90738722-90738741 Msa0964310:intron 40.0%
! TATTGCCAACCCATTGGTTA+GGG + chr6_3:90738723-90738742 Msa0964310:intron 40.0%
GTTTCTCTTTATCAGCCTTG+AGG - chr6_3:90739115-90739134 None:intergenic 40.0%
TAAGATGCAAGGATCTGACA+TGG - chr6_3:90739137-90739156 None:intergenic 40.0%
TCGTAGAAATCAAAGAGGCT+TGG + chr6_3:90739160-90739179 Msa0964310:CDS 40.0%
ATACTCCGACTACATGAATG+TGG - chr6_3:90739401-90739420 None:intergenic 40.0%
CTTGAGGAAGAGAAACTTGA+AGG + chr6_3:90739766-90739785 Msa0964310:CDS 40.0%
CTTGAAGGAGGAAGAAGAAA+TGG + chr6_3:90739781-90739800 Msa0964310:CDS 40.0%
AGCAAAGTGAGAGTCATAGA+TGG + chr6_3:90739902-90739921 Msa0964310:CDS 40.0%
TGATGGGAAAAAAAGTGGAG+TGG - chr6_3:90739945-90739964 None:intergenic 40.0%
AAAGATGGGTAAAGGTGAAG+AGG + chr6_3:90740172-90740191 Msa0964310:three_prime_UTR 40.0%
GAAAGACCAAAGACAAAGGA+AGG + chr6_3:90740223-90740242 Msa0964310:three_prime_UTR 40.0%
CTTGTACCTTCCTTTGTCTT+TGG - chr6_3:90740232-90740251 None:intergenic 40.0%
GCACACAATAAAGGAATGGT+AGG + chr6_3:90740384-90740403 Msa0964310:three_prime_UTR 40.0%
! TTAATGGATACGGAAAGGAC+CGG + chr6_3:90740425-90740444 Msa0964310:three_prime_UTR 40.0%
AACTGTGATAGGAGGAGAAG+TGG - chr6_3:90736506-90736525 None:intergenic 45.0%
TGTCGGTGCAAAATTGTGTC+TGG + chr6_3:90736802-90736821 Msa0964310:intron 45.0%
TATTGCCTCTCCAGTTTCTC+CGG - chr6_3:90737407-90737426 None:intergenic 45.0%
!! ACTAAGTAGTTGGCTTGAGC+TGG + chr6_3:90737728-90737747 Msa0964310:intron 45.0%
GTAGCTCCAAGGTCAATTTC+AGG + chr6_3:90737942-90737961 Msa0964310:CDS 45.0%
GCAGCCTCCAATTCACAATA+TGG - chr6_3:90738026-90738045 None:intergenic 45.0%
AACTGTTGCGCAATTGTTGC+TGG - chr6_3:90738143-90738162 None:intergenic 45.0%
GGTCTCCTACCAAACTCATA+AGG - chr6_3:90738209-90738228 None:intergenic 45.0%
TACCTCGATATTCAGGGACT+AGG - chr6_3:90738274-90738293 None:intergenic 45.0%
ATGCATGGACCCTAACCAAT+GGG - chr6_3:90738735-90738754 None:intergenic 45.0%
TATGCATGGACCCTAACCAA+TGG - chr6_3:90738736-90738755 None:intergenic 45.0%
GAGGAAGAGAAACTTGAAGG+AGG + chr6_3:90739769-90739788 Msa0964310:CDS 45.0%
TTGAGCAAGAGTGAAGCACA+TGG + chr6_3:90740319-90740338 Msa0964310:three_prime_UTR 45.0%
GGTCCTTTCCGTATCCATTA+AGG - chr6_3:90740426-90740445 None:intergenic 45.0%
!! AAAAATATTAGTTATTATTA+AGG + chr6_3:90737809-90737828 Msa0964310:intron 5.0%
!! TCCAACGACTGAGTTTTGGC+CGG + chr6_3:90737385-90737404 Msa0964310:intron 50.0%
!! TGAGTTTTGGCCGGAGAAAC+TGG + chr6_3:90737394-90737413 Msa0964310:intron 50.0%
TCAGGGACTAGGAGCAACTT+TGG - chr6_3:90738263-90738282 None:intergenic 50.0%
CTCCTAGTCCCTGAATATCG+AGG + chr6_3:90738269-90738288 Msa0964310:CDS 50.0%
ATGGACCCTAACCAATGGGT+TGG - chr6_3:90738731-90738750 None:intergenic 50.0%
CACACTAATGGGGCTATGCA+TGG - chr6_3:90738750-90738769 None:intergenic 50.0%
TCAGACTTCTTTGCGGTCAG+AGG - chr6_3:90739560-90739579 None:intergenic 50.0%
GACGCTCACACAAATGCTTG+AGG + chr6_3:90739750-90739769 Msa0964310:CDS 50.0%
TCTCTCGCGGCCTCAATCTT+TGG + chr6_3:90737303-90737322 Msa0964310:intron 55.0%
TCCGGCCAAAACTCAGTCGT+TGG - chr6_3:90737389-90737408 None:intergenic 55.0%
TTTGGCCGGAGAAACTGGAG+AGG + chr6_3:90737399-90737418 Msa0964310:intron 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 90735806 90740591 90735806 ID=Msa0964310;Name=Msa0964310
chr6_3 mRNA 90735806 90740591 90735806 ID=Msa0964310-mRNA-1;Parent=Msa0964310;Name=Msa0964310-mRNA-1;_AED=0.09;_eAED=0.09;_QI=54|1|1|1|1|1|6|621|598
chr6_3 exon 90735806 90736005 90735806 ID=Msa0964310-mRNA-1:exon:16337;Parent=Msa0964310-mRNA-1
chr6_3 exon 90736105 90736574 90736105 ID=Msa0964310-mRNA-1:exon:16338;Parent=Msa0964310-mRNA-1
chr6_3 exon 90736896 90737243 90736896 ID=Msa0964310-mRNA-1:exon:16339;Parent=Msa0964310-mRNA-1
chr6_3 exon 90737922 90738290 90737922 ID=Msa0964310-mRNA-1:exon:16340;Parent=Msa0964310-mRNA-1
chr6_3 exon 90739009 90739226 90739009 ID=Msa0964310-mRNA-1:exon:16341;Parent=Msa0964310-mRNA-1
chr6_3 exon 90739725 90740591 90739725 ID=Msa0964310-mRNA-1:exon:16342;Parent=Msa0964310-mRNA-1
chr6_3 five_prime_UTR 90735806 90735859 90735806 ID=Msa0964310-mRNA-1:five_prime_utr;Parent=Msa0964310-mRNA-1
chr6_3 CDS 90735860 90736005 90735860 ID=Msa0964310-mRNA-1:cds;Parent=Msa0964310-mRNA-1
chr6_3 CDS 90736105 90736574 90736105 ID=Msa0964310-mRNA-1:cds;Parent=Msa0964310-mRNA-1
chr6_3 CDS 90736896 90737243 90736896 ID=Msa0964310-mRNA-1:cds;Parent=Msa0964310-mRNA-1
chr6_3 CDS 90737922 90738290 90737922 ID=Msa0964310-mRNA-1:cds;Parent=Msa0964310-mRNA-1
chr6_3 CDS 90739009 90739226 90739009 ID=Msa0964310-mRNA-1:cds;Parent=Msa0964310-mRNA-1
chr6_3 CDS 90739725 90739970 90739725 ID=Msa0964310-mRNA-1:cds;Parent=Msa0964310-mRNA-1
chr6_3 three_prime_UTR 90739971 90740591 90739971 ID=Msa0964310-mRNA-1:three_prime_utr;Parent=Msa0964310-mRNA-1
Gene Sequence

>Msa0964310

ATGCCATGTTCTAAAGAAGAAGCTCTTATTAGACTCTTCTACAATTCTTCAAGCTCTTTCAAACTTCTCTTCCTCTTTCTCTTTTCTACTTCAACTTTGCTTCTCAAAATCCTTAACTTCATTAGTAGCTACTCTTTATTCCAAAGTGATCAACAATATGAATATGTTTCATCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATTCAAGAAAGTTATTGTTATGAAGATTCTATAGAGAAAGATGATTTAGTAGCTGATATAGTTTATGGTGGAGAAGCTCTTGTATTTCTTCATAGTAACAATAAGTCTCAAAGGAATCATTCTTTTTCTTATGAAGAAGAAGAGTTTATAACACCTCGAGATAGCTTCATTGAAGAGTTTTCTTCAGAAGAAAATTTTCCAACTTCAACTGAAAGTTTGTATGTTCATCACAAGTCACCAATTGTTTCAGATTTTGAGACAGAAACAAATGAAACAGAAATTCAAACAGAAGAAGATGCTGATTCTGTTCAAGATTCTATTCCAATTGAAAAGAGGACCACTTCTCCTCCTATCACAGTTAACCTATACAAAAGTGATGACTTAGTAGAGAGTGACAAAAACTATGATGAAAAATATGTTGATATTGAAGTAATAAAAAATGAGAAAGTGCAAGAAGAAAATATTCCAAGAGATGAGAGTGTTTTTGTGATTGGTCCTACACAATTGGAGAGAAATAAGAAGTTGATTATTGAAGAAAAAGATGATGAAGAGATATATGGTGATACAACCACTATTGGCTCAACATCTAAGGACTCTTCTGATTGGAGAAGTTCAATTATTTGTAGAGATTCTGGAACTGATGATTCATCATCAAGAAGAAGTTGTCCAAAATGGGAATCTTACGCAGTTTTTCAAAAATATGATGAAGAAATGTCATTTCTAGAAAGGATTAGTGCACAAAAGCTTCATGAAACTGAGTCATTGAGATCTATCAAAGTAGCTCCAAGGTCAATTTCAGGGAGAATTGTATACAAACTTTCAAGTATGAACAAAAAACCAGAAGATATAAGTCACAATCCATATTGTGAATTGGAGGCTGCATATGTTGCACAAATTTGCTTAACATGGGAAGCACTTAATTGGAACTACAAGAATTTTCAAACCAAACGAGCATCAAATGTTGATGTTGGTTGTCCAGCAACAATTGCGCAACAGTTTCAACAATTTCAAGTTTTGTTGCAAAGATATGTAGAGAATGAACCTTATGAGTTTGGTAGGAGACCAGAGATTTATGCTAGAATGAGGCATATGGCACCAAAGTTGCTCCTAGTCCCTGAATATCGAGAATCAGATGATGATCAGAAGGAGAATATTGGGTTTAACACTAAAATATCATCAGCTTCATTTCTTGTGATAATGGAAGATGGAATCAGAACATTCATGAATTTCCTCAAGGCTGATAAAGAGAAACCATGTCAGATCCTTGCATCTTACTTTCGTAGAAATCAAAGAGGCTTGGTTGATCCAACATTAATCCGTCTTTTAAAGAAAGTTAATCAAAAGAAGAAGATAAAGATTAAGGATCTTCGACGCTCACACAAATGCTTGAGGAAGAGAAACTTGAAGGAGGAAGAAGAAATGGAGATTTTGATGGCATTGATAGATTTAAAAGTGGTGTCAAGGGTTTTAAGAATGAGTGACATGAATGAAAATCAATTACATTGGTGTGAAGAGAAAAATAGCAAAGTGAGAGTCATAGATGGAAAACTACAAAGAGATTCCACTCCACTTTTTTTCCCATCACATTGA

Protein sequence

>Msa0964310

MPCSKEEALIRLFYNSSSSFKLLFLFLFSTSTLLLKILNFISSYSLFQSDQQYEYVSSEEEEEEEEEEEIQESYCYEDSIEKDDLVADIVYGGEALVFLHSNNKSQRNHSFSYEEEEFITPRDSFIEEFSSEENFPTSTESLYVHHKSPIVSDFETETNETEIQTEEDADSVQDSIPIEKRTTSPPITVNLYKSDDLVESDKNYDEKYVDIEVIKNEKVQEENIPRDESVFVIGPTQLERNKKLIIEEKDDEEIYGDTTTIGSTSKDSSDWRSSIICRDSGTDDSSSRRSCPKWESYAVFQKYDEEMSFLERISAQKLHETESLRSIKVAPRSISGRIVYKLSSMNKKPEDISHNPYCELEAAYVAQICLTWEALNWNYKNFQTKRASNVDVGCPATIAQQFQQFQVLLQRYVENEPYEFGRRPEIYARMRHMAPKLLLVPEYRESDDDQKENIGFNTKISSASFLVIMEDGIRTFMNFLKADKEKPCQILASYFRRNQRGLVDPTLIRLLKKVNQKKKIKIKDLRRSHKCLRKRNLKEEEEMEILMALIDLKVVSRVLRMSDMNENQLHWCEEKNSKVRVIDGKLQRDSTPLFFPSH*