Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217160 | XP_003596535.2 | 94.872 | 273 | 14 | 0 | 1 | 273 | 1 | 273 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217160 | sp|P21747|EA92_VICFA | 43.382 | 272 | 139 | 7 | 1 | 265 | 1 | 264 | 8.15e-69 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217160 | G7ITL0 | 94.872 | 273 | 14 | 0 | 1 | 273 | 1 | 273 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0217110 | Msa0217160 | 0.858920 | 5.915068e-63 | -8.615850e-47 |
| Msa0217130 | Msa0217160 | 0.998647 | 1.238490e-271 | -8.615850e-47 |
| Msa0217160 | Msa0256730 | 0.967794 | 9.034290e-128 | -8.615850e-47 |
| Msa0217160 | Msa0296220 | 0.951070 | 4.422048e-109 | -8.615850e-47 |
| Msa0217160 | Msa0296290 | 0.802468 | 5.529560e-49 | -8.615850e-47 |
| Msa0217160 | Msa1385290 | 0.982512 | 2.773121e-155 | -8.615850e-47 |
| Msa0217160 | Msa1385330 | 0.984243 | 5.364327e-160 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217160 | MtrunA17_Chr2g0318901 | 94.872 | 273 | 14 | 0 | 1 | 273 | 1 | 273 | 0.0 | 548 |
| Msa0217160 | MtrunA17_Chr2g0318871 | 83.516 | 273 | 45 | 0 | 1 | 273 | 1 | 273 | 2.40e-176 | 486 |
| Msa0217160 | MtrunA17_Chr2g0318931 | 63.941 | 269 | 88 | 5 | 1 | 261 | 5 | 272 | 1.11e-123 | 353 |
| Msa0217160 | MtrunA17_Chr8g0355861 | 45.149 | 268 | 132 | 7 | 1 | 260 | 1 | 261 | 4.08e-78 | 238 |
| Msa0217160 | MtrunA17_Chr8g0355321 | 37.540 | 309 | 129 | 6 | 10 | 260 | 1 | 303 | 1.49e-73 | 227 |
| Msa0217160 | MtrunA17_Chr1g0168781 | 42.435 | 271 | 142 | 6 | 1 | 264 | 1 | 264 | 3.16e-72 | 222 |
| Msa0217160 | MtrunA17_Chr8g0355871 | 45.918 | 196 | 97 | 3 | 71 | 259 | 29 | 222 | 1.20e-60 | 192 |
| Msa0217160 | MtrunA17_Chr8g0355311 | 49.412 | 170 | 79 | 2 | 96 | 265 | 34 | 196 | 7.79e-58 | 183 |
| Msa0217160 | MtrunA17_Chr8g0355841 | 53.165 | 158 | 73 | 1 | 111 | 268 | 362 | 518 | 1.33e-57 | 192 |
| Msa0217160 | MtrunA17_Chr8g0355331 | 45.882 | 170 | 85 | 2 | 97 | 266 | 266 | 428 | 1.56e-53 | 179 |
| Msa0217160 | MtrunA17_Chr8g0355831 | 55.333 | 150 | 66 | 1 | 111 | 260 | 204 | 352 | 1.16e-51 | 172 |
| Msa0217160 | MtrunA17_Chr3g0139431 | 31.889 | 323 | 145 | 12 | 6 | 259 | 5 | 321 | 1.60e-44 | 153 |
| Msa0217160 | MtrunA17_Chr1g0147261 | 33.663 | 303 | 149 | 12 | 1 | 257 | 1 | 297 | 2.10e-44 | 152 |
| Msa0217160 | MtrunA17_Chr1g0147311 | 28.746 | 327 | 158 | 9 | 5 | 258 | 30 | 354 | 1.89e-39 | 140 |
| Msa0217160 | MtrunA17_Chr1g0147331 | 29.538 | 325 | 153 | 11 | 5 | 258 | 4 | 323 | 3.10e-38 | 136 |
| Msa0217160 | MtrunA17_Chr1g0147241 | 30.671 | 313 | 158 | 12 | 1 | 257 | 1 | 310 | 1.02e-37 | 135 |
| Msa0217160 | MtrunA17_Chr1g0146631 | 28.923 | 325 | 155 | 11 | 5 | 258 | 4 | 323 | 7.25e-37 | 133 |
| Msa0217160 | MtrunA17_Chr1g0147291 | 32.456 | 228 | 126 | 9 | 57 | 258 | 40 | 265 | 5.96e-31 | 116 |
| Msa0217160 | MtrunA17_Chr1g0147301 | 32.618 | 233 | 123 | 10 | 57 | 258 | 54 | 283 | 7.58e-31 | 116 |
| Msa0217160 | MtrunA17_Chr1g0147271 | 34.579 | 214 | 111 | 7 | 73 | 258 | 171 | 383 | 3.17e-30 | 116 |
| Msa0217160 | MtrunA17_Chr1g0147321 | 32.456 | 228 | 126 | 9 | 56 | 257 | 10 | 235 | 3.78e-30 | 114 |
| Msa0217160 | MtrunA17_Chr1g0147251 | 31.278 | 227 | 123 | 6 | 58 | 257 | 20 | 240 | 5.99e-30 | 112 |
| Msa0217160 | MtrunA17_Chr3g0144421 | 28.879 | 232 | 130 | 10 | 59 | 259 | 75 | 302 | 3.25e-19 | 85.5 |
| Msa0217160 | MtrunA17_Chr4g0034821 | 29.778 | 225 | 116 | 11 | 73 | 261 | 75 | 293 | 5.11e-18 | 82.0 |
| Msa0217160 | MtrunA17_Chr3g0138231 | 31.250 | 144 | 89 | 4 | 128 | 261 | 125 | 268 | 2.18e-15 | 74.3 |
| Msa0217160 | MtrunA17_Chr4g0034731 | 32.867 | 143 | 84 | 5 | 129 | 259 | 290 | 432 | 1.50e-14 | 73.2 |
| Msa0217160 | MtrunA17_Chr3g0144451 | 32.639 | 144 | 87 | 5 | 128 | 261 | 134 | 277 | 1.84e-14 | 71.6 |
| Msa0217160 | MtrunA17_Chr4g0034721 | 34.266 | 143 | 82 | 6 | 129 | 259 | 434 | 576 | 2.76e-14 | 72.4 |
| Msa0217160 | MtrunA17_Chr4g0076231 | 26.897 | 145 | 95 | 5 | 123 | 257 | 13 | 156 | 7.69e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217160 | AT5G25610.1 | 33.036 | 224 | 121 | 8 | 63 | 257 | 166 | 389 | 4.08e-29 | 114 |
| Msa0217160 | AT1G49320.1 | 35.135 | 148 | 81 | 5 | 126 | 258 | 131 | 278 | 1.23e-16 | 78.2 |
Find 69 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCATTTCCTTGGAAATA+AGG | 0.195752 | 2_1:+63741186 | Msa0217160:CDS |
| GCAAAGATTGTGCCTCTTTA+GGG | 0.226798 | 2_1:-63741395 | None:intergenic |
| AGCAAAGATTGTGCCTCTTT+AGG | 0.246185 | 2_1:-63741396 | None:intergenic |
| GACAATAAAATACAACCTTT+TGG | 0.266567 | 2_1:-63741009 | None:intergenic |
| ATTGAAATCAGAAAATTTAG+AGG | 0.297761 | 2_1:+63741627 | Msa0217160:three_prime_UTR |
| CGTCCCTTTGCACAACCTTA+TGG | 0.298036 | 2_1:+63740722 | Msa0217160:CDS |
| CACTGCCTGAAGAAGAATAT+TGG | 0.300262 | 2_1:+63739527 | Msa0217160:CDS |
| TGGTGCCAATGTTGCTGTTT+AGG | 0.323097 | 2_1:+63741249 | Msa0217160:CDS |
| GCTTCCCAATATTCTTCTTC+AGG | 0.355894 | 2_1:-63739532 | None:intergenic |
| AAGAATATTGGGAAGCTGTT+TGG | 0.356329 | 2_1:+63739539 | Msa0217160:CDS |
| TCCCTTGTTGATTTCAAGAA+TGG | 0.360833 | 2_1:+63739049 | Msa0217160:exon |
| GCATTGTCCAAACCTAAATT+AGG | 0.363667 | 2_1:-63741223 | None:intergenic |
| AAATCCTTAGGAACATTAAT+CGG | 0.372556 | 2_1:+63740854 | Msa0217160:CDS |
| GTTTGTCATGCTGATACTTC+AGG | 0.375794 | 2_1:+63741106 | Msa0217160:CDS |
| GGATTTGCAATTTCTAAGCT+TGG | 0.386794 | 2_1:+63740875 | Msa0217160:CDS |
| TATGAACATGAACTTTATCC+TGG | 0.401999 | 2_1:+63740671 | Msa0217160:CDS |
| CCCTTGTTGATTTCAAGAAT+GGG | 0.405370 | 2_1:+63739050 | Msa0217160:exon |
| AAACCTGTTTGTCATTTCCT+TGG | 0.406653 | 2_1:+63741178 | Msa0217160:CDS |
| GATGTGCAGCTTGCACTTGC+AGG | 0.411503 | 2_1:+63739490 | Msa0217160:intron |
| ACTGCCTGAAGAAGAATATT+GGG | 0.412787 | 2_1:+63739528 | Msa0217160:CDS |
| TCTAGCTTAATTAGCTAGAA+AGG | 0.415491 | 2_1:-63741347 | None:intergenic |
| ATAGAGTCAGTGCAAAATCT+TGG | 0.422753 | 2_1:+63740953 | Msa0217160:CDS |
| ATGGGTACCTAATTTAGGTT+TGG | 0.424424 | 2_1:+63741216 | Msa0217160:CDS |
| TTGTGTGTCATCAATTTCCA+TGG | 0.427694 | 2_1:-63740630 | None:intergenic |
| AGAAAGCAGTTATGTGTCAT+AGG | 0.437124 | 2_1:+63740978 | Msa0217160:CDS |
| TTGTTCATGCTTATCTATGA+AGG | 0.440092 | 2_1:-63740924 | None:intergenic |
| AAATAACAACCTTGAGGTCC+AGG | 0.452077 | 2_1:-63739604 | None:intergenic |
| TAGAAGTTCTCGAAGAGAAG+TGG | 0.456535 | 2_1:-63739578 | None:intergenic |
| TTTCCAAGGAAATGACAAAC+AGG | 0.462441 | 2_1:-63741181 | None:intergenic |
| CTAGCTAATTAAGCTAGAGT+TGG | 0.466469 | 2_1:+63741352 | Msa0217160:three_prime_UTR |
| CATGTTATAATATGATGAAA+TGG | 0.470529 | 2_1:+63741435 | Msa0217160:three_prime_UTR |
| AACCTTATGGTGTTTATACA+TGG | 0.471062 | 2_1:+63740735 | Msa0217160:CDS |
| CTTCTTCAGGCAGTGATGCA+TGG | 0.473820 | 2_1:-63739519 | None:intergenic |
| GAAGTGGGAATGGGAGTGTT+GGG | 0.474967 | 2_1:-63739562 | None:intergenic |
| ACACCATAAGGTTGTGCAAA+GGG | 0.481077 | 2_1:-63740725 | None:intergenic |
| TTAGGTTTGGACAATGCCTA+TGG | 0.494021 | 2_1:+63741229 | Msa0217160:CDS |
| TTCTCGAAGAGAAGTGGGAA+TGG | 0.495855 | 2_1:-63739572 | None:intergenic |
| CTTCGAGAACTTCTAAAGCC+TGG | 0.497324 | 2_1:+63739586 | Msa0217160:CDS |
| ATAAAATAGCCTTATTTCCA+AGG | 0.498608 | 2_1:-63741195 | None:intergenic |
| ATCCCATGGGTTGTCCATGA+TGG | 0.500990 | 2_1:-63741280 | None:intergenic |
| ATCCATGTATAAACACCATA+AGG | 0.501910 | 2_1:-63740737 | None:intergenic |
| AGAAGTGGGAATGGGAGTGT+TGG | 0.505103 | 2_1:-63739563 | None:intergenic |
| GTTCCATCATTAGCCACCAA+TGG | 0.510862 | 2_1:-63741064 | None:intergenic |
| TCATAGGTTGAATTTCCAAA+AGG | 0.512621 | 2_1:+63740994 | Msa0217160:CDS |
| CAGATTATGAAAGCTGATCC+TGG | 0.522799 | 2_1:+63741151 | Msa0217160:CDS |
| ATTTATGTTACACAATCCCA+TGG | 0.523591 | 2_1:-63741294 | None:intergenic |
| AAATCCGATTAATGTTCCTA+AGG | 0.524830 | 2_1:-63740858 | None:intergenic |
| GTTCCATTGGTGGCTAATGA+TGG | 0.535070 | 2_1:+63741061 | Msa0217160:CDS |
| TGTGTGTCATCAATTTCCAT+GGG | 0.537514 | 2_1:-63740629 | None:intergenic |
| TCTCGAAGAGAAGTGGGAAT+GGG | 0.548515 | 2_1:-63739571 | None:intergenic |
| CTTCTAAAGCCTGGACCTCA+AGG | 0.560362 | 2_1:+63739595 | Msa0217160:CDS |
| AACAGCAACATTGGCACCAT+AGG | 0.567015 | 2_1:-63741245 | None:intergenic |
| AGAAGTTCTCGAAGAGAAGT+GGG | 0.572137 | 2_1:-63739577 | None:intergenic |
| TCTCCATCATGGACAACCCA+TGG | 0.575120 | 2_1:+63741277 | Msa0217160:three_prime_UTR |
| GTAAAGAAAGCAGCTGCAGA+AGG | 0.576977 | 2_1:+63740812 | Msa0217160:CDS |
| GTACTCCTAAACAGCAACAT+TGG | 0.581094 | 2_1:-63741254 | None:intergenic |
| AGAAGGATACACATTTAATG+AGG | 0.587845 | 2_1:+63740784 | Msa0217160:CDS |
| TTTAGGAGTACTCTCCATCA+TGG | 0.588077 | 2_1:+63741266 | Msa0217160:exon |
| CTCCATCATGGACAACCCAT+GGG | 0.596865 | 2_1:+63741278 | Msa0217160:three_prime_UTR |
| TGTCATCAATTTCCATGGGG+TGG | 0.605445 | 2_1:-63740625 | None:intergenic |
| GAACTGAAATGAAAACGAGA+AGG | 0.613747 | 2_1:-63739082 | None:intergenic |
| TTTATGTTACACAATCCCAT+GGG | 0.616443 | 2_1:-63741293 | None:intergenic |
| TGACAAACAGGTTTACTACC+AGG | 0.616609 | 2_1:-63741169 | None:intergenic |
| CCCATTCTTGAAATCAACAA+GGG | 0.626455 | 2_1:-63739050 | None:intergenic |
| TCCCATTCTTGAAATCAACA+AGG | 0.627989 | 2_1:-63739051 | None:intergenic |
| AAAATATCATCGATAAGACT+CGG | 0.638308 | 2_1:-63741522 | None:intergenic |
| AACACCATAAGGTTGTGCAA+AGG | 0.645055 | 2_1:-63740726 | None:intergenic |
| TGAAATTGATGACCACCCCA+TGG | 0.663021 | 2_1:+63740613 | Msa0217160:CDS |
| GTGTGTCATCAATTTCCATG+GGG | 0.716189 | 2_1:-63740628 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCACAATATTAATTAATAT+AGG | - | chr2_1:63739706-63739725 | None:intergenic | 10.0% |
| !!! | TAATCCTTTATTAATTTTAT+TGG | + | chr2_1:63739811-63739830 | Msa0217160:intron | 10.0% |
| !!! | CATTTAAAATATAAAAAAGT+TGG | + | chr2_1:63740064-63740083 | Msa0217160:intron | 10.0% |
| !! | ACATTATTAATTTATTTGTT+AGG | - | chr2_1:63740305-63740324 | None:intergenic | 10.0% |
| !! | TGATCCAATAAAATTAATAA+AGG | - | chr2_1:63739818-63739837 | None:intergenic | 15.0% |
| !! | ATCGATATTTACTTTATATT+TGG | + | chr2_1:63740029-63740048 | Msa0217160:intron | 15.0% |
| !!! | TATTTTAAATGTATTAGGTT+GGG | - | chr2_1:63740055-63740074 | None:intergenic | 15.0% |
| !!! | ATATTTTAAATGTATTAGGT+TGG | - | chr2_1:63740056-63740075 | None:intergenic | 15.0% |
| !! | TATTTGTCATATAAATTGAA+TGG | - | chr2_1:63740196-63740215 | None:intergenic | 15.0% |
| !! | TTTATTAGTTAAAATTCAGA+TGG | + | chr2_1:63740433-63740452 | Msa0217160:intron | 15.0% |
| !! | TTATTAGTTAAAATTCAGAT+GGG | + | chr2_1:63740434-63740453 | Msa0217160:intron | 15.0% |
| !!! | TAACACATATTCTTTTTTAT+TGG | - | chr2_1:63740513-63740532 | None:intergenic | 15.0% |
| !! | AAAGAATATGTGTTAAATTA+TGG | + | chr2_1:63740518-63740537 | Msa0217160:intron | 15.0% |
| !!! | TTTCGTAAGTAAATATTTTT+AGG | + | chr2_1:63741484-63741503 | Msa0217160:three_prime_UTR | 15.0% |
| !!! | TTCGTAAGTAAATATTTTTA+GGG | + | chr2_1:63741485-63741504 | Msa0217160:three_prime_UTR | 15.0% |
| !! | AATAACATGTCATAAAAAAA+AGG | + | chr2_1:63741556-63741575 | Msa0217160:three_prime_UTR | 15.0% |
| !! | TTAAACAACAACCTAAAATA+TGG | + | chr2_1:63739204-63739223 | Msa0217160:intron | 20.0% |
| !!! | TACTTTAATTGCCATATTTT+AGG | - | chr2_1:63739218-63739237 | None:intergenic | 20.0% |
| !! | ATTATTACTTACATATGTTG+AGG | + | chr2_1:63739254-63739273 | Msa0217160:intron | 20.0% |
| !! | TTATTACTTACATATGTTGA+GGG | + | chr2_1:63739255-63739274 | Msa0217160:intron | 20.0% |
| !! | AAAATTAAATAACAACCTTG+AGG | - | chr2_1:63739613-63739632 | None:intergenic | 20.0% |
| !!! | TCAGAAAAGGTAAATTTTAT+GGG | + | chr2_1:63739753-63739772 | Msa0217160:intron | 20.0% |
| !! | TTATATGACAAATAATTCCA+AGG | + | chr2_1:63740202-63740221 | Msa0217160:intron | 20.0% |
| !! | TATATGACAAATAATTCCAA+GGG | + | chr2_1:63740203-63740222 | Msa0217160:intron | 20.0% |
| !!! | AATTTATTTGTTAGGATGAA+AGG | - | chr2_1:63740297-63740316 | None:intergenic | 20.0% |
| !! | TCTCTCAAGTTATATATTAT+TGG | - | chr2_1:63740331-63740350 | None:intergenic | 20.0% |
| !!! | TATTTTAAACCCATGTATTA+TGG | + | chr2_1:63740581-63740600 | Msa0217160:intron | 20.0% |
| !!! | GTTCATAGAAAAATGTTTTT+GGG | - | chr2_1:63740658-63740677 | None:intergenic | 20.0% |
| !!! | TGTTCATAGAAAAATGTTTT+TGG | - | chr2_1:63740659-63740678 | None:intergenic | 20.0% |
| !! | ATTAAAGACATTGAAAAAGA+AGG | + | chr2_1:63740767-63740786 | Msa0217160:CDS | 20.0% |
| !!! | TTTTATTGTCATGAAATTCA+TGG | + | chr2_1:63741022-63741041 | Msa0217160:CDS | 20.0% |
| !! | CATGTTATAATATGATGAAA+TGG | + | chr2_1:63741435-63741454 | Msa0217160:three_prime_UTR | 20.0% |
| !!! | TTTTTAGGGTTAAATATGTT+TGG | + | chr2_1:63741499-63741518 | Msa0217160:three_prime_UTR | 20.0% |
| !! | ATTGAAATCAGAAAATTTAG+AGG | + | chr2_1:63741627-63741646 | Msa0217160:three_prime_UTR | 20.0% |
| ! | TAAGTTTATAGTACATCAGT+TGG | - | chr2_1:63739187-63739206 | None:intergenic | 25.0% |
| ! | GTAAGAAATAAACTCAGAAA+AGG | + | chr2_1:63739740-63739759 | Msa0217160:intron | 25.0% |
| !! | CTCAGAAAAGGTAAATTTTA+TGG | + | chr2_1:63739752-63739771 | Msa0217160:intron | 25.0% |
| ! | AGAGATGAAAAACTAATAAG+GGG | - | chr2_1:63739869-63739888 | None:intergenic | 25.0% |
| ! | CAGAGATGAAAAACTAATAA+GGG | - | chr2_1:63739870-63739889 | None:intergenic | 25.0% |
| ! | TCAGAGATGAAAAACTAATA+AGG | - | chr2_1:63739871-63739890 | None:intergenic | 25.0% |
| ! | ACAAAATTAATACTCTCCTT+CGG | - | chr2_1:63739921-63739940 | None:intergenic | 25.0% |
| !!! | AAGGAGAGTATTAATTTTGT+AGG | + | chr2_1:63739921-63739940 | Msa0217160:intron | 25.0% |
| ! | TCATGTGAGTTTCATAAATT+TGG | - | chr2_1:63740464-63740483 | None:intergenic | 25.0% |
| ! | TTTATGAAACTCACATGATT+TGG | + | chr2_1:63740466-63740485 | Msa0217160:intron | 25.0% |
| !! | AAATTTTGTGCAAAATCCTT+AGG | + | chr2_1:63740842-63740861 | Msa0217160:CDS | 25.0% |
| ! | AAATCCTTAGGAACATTAAT+CGG | + | chr2_1:63740854-63740873 | Msa0217160:CDS | 25.0% |
| !! | GACAATAAAATACAACCTTT+TGG | - | chr2_1:63741012-63741031 | None:intergenic | 25.0% |
| !!! | ATAAAATAGCCTTATTTCCA+AGG | - | chr2_1:63741198-63741217 | None:intergenic | 25.0% |
| !!! | TTGGAAATAAGGCTATTTTA+TGG | + | chr2_1:63741197-63741216 | Msa0217160:CDS | 25.0% |
| !!! | TGGAAATAAGGCTATTTTAT+GGG | + | chr2_1:63741198-63741217 | Msa0217160:CDS | 25.0% |
| !! | ATTTTATGGGTACCTAATTT+AGG | + | chr2_1:63741211-63741230 | Msa0217160:CDS | 25.0% |
| ! | AAAATATCATCGATAAGACT+CGG | - | chr2_1:63741525-63741544 | None:intergenic | 25.0% |
| !! | GTCTTATCGATGATATTTTT+AGG | + | chr2_1:63741526-63741545 | Msa0217160:three_prime_UTR | 25.0% |
| AAGAGTTCTTAAGTGTTTAG+AGG | - | chr2_1:63739152-63739171 | None:intergenic | 30.0% | |
| TCTAAACACTTAAGAACTCT+TGG | + | chr2_1:63739151-63739170 | Msa0217160:intron | 30.0% | |
| AGGTTGACAAATTTGAATGT+TGG | - | chr2_1:63739951-63739970 | None:intergenic | 30.0% | |
| ! | TGACTCTATAATTTTTGCCT+AGG | + | chr2_1:63740127-63740146 | Msa0217160:intron | 30.0% |
| TAAATTTAGAAAGAGACCCT+TGG | - | chr2_1:63740222-63740241 | None:intergenic | 30.0% | |
| ! | GAGAGATGTTATGATTTTTC+TGG | + | chr2_1:63740347-63740366 | Msa0217160:intron | 30.0% |
| TGTGAGTTTCATAAATTTGG+AGG | - | chr2_1:63740461-63740480 | None:intergenic | 30.0% | |
| TATGAACATGAACTTTATCC+TGG | + | chr2_1:63740671-63740690 | Msa0217160:CDS | 30.0% | |
| AACCTTATGGTGTTTATACA+TGG | + | chr2_1:63740735-63740754 | Msa0217160:CDS | 30.0% | |
| ATCCATGTATAAACACCATA+AGG | - | chr2_1:63740740-63740759 | None:intergenic | 30.0% | |
| AGAAGGATACACATTTAATG+AGG | + | chr2_1:63740784-63740803 | Msa0217160:CDS | 30.0% | |
| AAATCCGATTAATGTTCCTA+AGG | - | chr2_1:63740861-63740880 | None:intergenic | 30.0% | |
| TTGTTCATGCTTATCTATGA+AGG | - | chr2_1:63740927-63740946 | None:intergenic | 30.0% | |
| ! | TCATAGGTTGAATTTCCAAA+AGG | + | chr2_1:63740994-63741013 | Msa0217160:CDS | 30.0% |
| ! | TTGTCATTTCCTTGGAAATA+AGG | + | chr2_1:63741186-63741205 | Msa0217160:CDS | 30.0% |
| TTTATGTTACACAATCCCAT+GGG | - | chr2_1:63741296-63741315 | None:intergenic | 30.0% | |
| ATTTATGTTACACAATCCCA+TGG | - | chr2_1:63741297-63741316 | None:intergenic | 30.0% | |
| ! | TCTAGCTTAATTAGCTAGAA+AGG | - | chr2_1:63741350-63741369 | None:intergenic | 30.0% |
| ! | TACTTTTATGTACCCTAAAG+AGG | + | chr2_1:63741383-63741402 | Msa0217160:three_prime_UTR | 30.0% |
| !! | TCCCTTGTTGATTTCAAGAA+TGG | + | chr2_1:63739049-63739068 | Msa0217160:exon | 35.0% |
| CCCATTCTTGAAATCAACAA+GGG | - | chr2_1:63739053-63739072 | None:intergenic | 35.0% | |
| !! | CCCTTGTTGATTTCAAGAAT+GGG | + | chr2_1:63739050-63739069 | Msa0217160:exon | 35.0% |
| TCCCATTCTTGAAATCAACA+AGG | - | chr2_1:63739054-63739073 | None:intergenic | 35.0% | |
| GAACTGAAATGAAAACGAGA+AGG | - | chr2_1:63739085-63739104 | None:intergenic | 35.0% | |
| !!! | GAAATGAAAGGTTTTAGAGC+AGG | - | chr2_1:63739123-63739142 | None:intergenic | 35.0% |
| !! | TAGAGGATGATGGAAATGAA+AGG | - | chr2_1:63739135-63739154 | None:intergenic | 35.0% |
| CTTAAGTGTTTAGAGGATGA+TGG | - | chr2_1:63739145-63739164 | None:intergenic | 35.0% | |
| ACTGCCTGAAGAAGAATATT+GGG | + | chr2_1:63739528-63739547 | Msa0217160:CDS | 35.0% | |
| AAGAATATTGGGAAGCTGTT+TGG | + | chr2_1:63739539-63739558 | Msa0217160:CDS | 35.0% | |
| !! | TCTCTGAAGCTGTAATATAG+TGG | + | chr2_1:63739884-63739903 | Msa0217160:intron | 35.0% |
| !! | TTGTTAGGATGAAAGGTGTT+TGG | - | chr2_1:63740290-63740309 | None:intergenic | 35.0% |
| !! | TATGGTGTCACAGTCAAAAT+TGG | + | chr2_1:63740536-63740555 | Msa0217160:intron | 35.0% |
| TGTGTGTCATCAATTTCCAT+GGG | - | chr2_1:63740632-63740651 | None:intergenic | 35.0% | |
| TTGTGTGTCATCAATTTCCA+TGG | - | chr2_1:63740633-63740652 | None:intergenic | 35.0% | |
| GGATTTGCAATTTCTAAGCT+TGG | + | chr2_1:63740875-63740894 | Msa0217160:CDS | 35.0% | |
| ATAGAGTCAGTGCAAAATCT+TGG | + | chr2_1:63740953-63740972 | Msa0217160:CDS | 35.0% | |
| AGAAAGCAGTTATGTGTCAT+AGG | + | chr2_1:63740978-63740997 | Msa0217160:CDS | 35.0% | |
| ! | TCATGGAACAACAGCTTTTA+TGG | + | chr2_1:63741039-63741058 | Msa0217160:CDS | 35.0% |
| ! | AACAGCTTTTATGGTTCCAT+TGG | + | chr2_1:63741048-63741067 | Msa0217160:CDS | 35.0% |
| ! | AAACCTGTTTGTCATTTCCT+TGG | + | chr2_1:63741178-63741197 | Msa0217160:CDS | 35.0% |
| TTTCCAAGGAAATGACAAAC+AGG | - | chr2_1:63741184-63741203 | None:intergenic | 35.0% | |
| ! | ATGGGTACCTAATTTAGGTT+TGG | + | chr2_1:63741216-63741235 | Msa0217160:CDS | 35.0% |
| GCATTGTCCAAACCTAAATT+AGG | - | chr2_1:63741226-63741245 | None:intergenic | 35.0% | |
| CTAGCTAATTAAGCTAGAGT+TGG | + | chr2_1:63741352-63741371 | Msa0217160:three_prime_UTR | 35.0% | |
| ACTTACATATGTTGAGGGTG+TGG | + | chr2_1:63739260-63739279 | Msa0217160:intron | 40.0% | |
| CACTGCCTGAAGAAGAATAT+TGG | + | chr2_1:63739527-63739546 | Msa0217160:CDS | 40.0% | |
| GCTTCCCAATATTCTTCTTC+AGG | - | chr2_1:63739535-63739554 | None:intergenic | 40.0% | |
| AGAAGTTCTCGAAGAGAAGT+GGG | - | chr2_1:63739580-63739599 | None:intergenic | 40.0% | |
| TAGAAGTTCTCGAAGAGAAG+TGG | - | chr2_1:63739581-63739600 | None:intergenic | 40.0% | |
| AAATAACAACCTTGAGGTCC+AGG | - | chr2_1:63739607-63739626 | None:intergenic | 40.0% | |
| AGTGGTATTGTTGAATCCGA+AGG | + | chr2_1:63739902-63739921 | Msa0217160:intron | 40.0% | |
| ! | CCAGGAATTTTGTAAAGCCT+AGG | - | chr2_1:63740147-63740166 | None:intergenic | 40.0% |
| CCTAGGCTTTACAAAATTCC+TGG | + | chr2_1:63740144-63740163 | Msa0217160:intron | 40.0% | |
| TACAGCACCATACTGTACAT+CGG | + | chr2_1:63740256-63740275 | Msa0217160:intron | 40.0% | |
| AAACCCATGTATTATGGCAC+AGG | + | chr2_1:63740587-63740606 | Msa0217160:intron | 40.0% | |
| ACACCTGTGCCATAATACAT+GGG | - | chr2_1:63740593-63740612 | None:intergenic | 40.0% | |
| AACACCTGTGCCATAATACA+TGG | - | chr2_1:63740594-63740613 | None:intergenic | 40.0% | |
| GTGTGTCATCAATTTCCATG+GGG | - | chr2_1:63740631-63740650 | None:intergenic | 40.0% | |
| !! | TGCACTTTCATTGTTTTGCC+AGG | - | chr2_1:63740692-63740711 | None:intergenic | 40.0% |
| ACACCATAAGGTTGTGCAAA+GGG | - | chr2_1:63740728-63740747 | None:intergenic | 40.0% | |
| AACACCATAAGGTTGTGCAA+AGG | - | chr2_1:63740729-63740748 | None:intergenic | 40.0% | |
| ! | AGCTTTTATGGTTCCATTGG+TGG | + | chr2_1:63741051-63741070 | Msa0217160:CDS | 40.0% |
| GTTTGTCATGCTGATACTTC+AGG | + | chr2_1:63741106-63741125 | Msa0217160:CDS | 40.0% | |
| CAGATTATGAAAGCTGATCC+TGG | + | chr2_1:63741151-63741170 | Msa0217160:CDS | 40.0% | |
| TGACAAACAGGTTTACTACC+AGG | - | chr2_1:63741172-63741191 | None:intergenic | 40.0% | |
| TTAGGTTTGGACAATGCCTA+TGG | + | chr2_1:63741229-63741248 | Msa0217160:CDS | 40.0% | |
| GTACTCCTAAACAGCAACAT+TGG | - | chr2_1:63741257-63741276 | None:intergenic | 40.0% | |
| !! | TTTAGGAGTACTCTCCATCA+TGG | + | chr2_1:63741266-63741285 | Msa0217160:exon | 40.0% |
| GCAAAGATTGTGCCTCTTTA+GGG | - | chr2_1:63741398-63741417 | None:intergenic | 40.0% | |
| AGCAAAGATTGTGCCTCTTT+AGG | - | chr2_1:63741399-63741418 | None:intergenic | 40.0% | |
| TCTCGAAGAGAAGTGGGAAT+GGG | - | chr2_1:63739574-63739593 | None:intergenic | 45.0% | |
| TTCTCGAAGAGAAGTGGGAA+TGG | - | chr2_1:63739575-63739594 | None:intergenic | 45.0% | |
| !! | CTTCGAGAACTTCTAAAGCC+TGG | + | chr2_1:63739586-63739605 | Msa0217160:CDS | 45.0% |
| ACCATACTGTACATCGGTAG+AGG | + | chr2_1:63740262-63740281 | Msa0217160:intron | 45.0% | |
| TCCTCTACCGATGTACAGTA+TGG | - | chr2_1:63740266-63740285 | None:intergenic | 45.0% | |
| ! | TGAAATTGATGACCACCCCA+TGG | + | chr2_1:63740613-63740632 | Msa0217160:CDS | 45.0% |
| TGTCATCAATTTCCATGGGG+TGG | - | chr2_1:63740628-63740647 | None:intergenic | 45.0% | |
| GTAAAGAAAGCAGCTGCAGA+AGG | + | chr2_1:63740812-63740831 | Msa0217160:CDS | 45.0% | |
| ! | GTTCCATTGGTGGCTAATGA+TGG | + | chr2_1:63741061-63741080 | Msa0217160:CDS | 45.0% |
| GTTCCATCATTAGCCACCAA+TGG | - | chr2_1:63741067-63741086 | None:intergenic | 45.0% | |
| AACAGCAACATTGGCACCAT+AGG | - | chr2_1:63741248-63741267 | None:intergenic | 45.0% | |
| !! | TGGTGCCAATGTTGCTGTTT+AGG | + | chr2_1:63741249-63741268 | Msa0217160:CDS | 45.0% |
| !!! | TTTTATATTTTAAATGTATT+AGG | - | chr2_1:63740060-63740079 | None:intergenic | 5.0% |
| !!! | ATTTAAAATATAAAAAAGTT+GGG | + | chr2_1:63740065-63740084 | Msa0217160:intron | 5.0% |
| !! | AAAATAAAAATTATACAATA+AGG | - | chr2_1:63741467-63741486 | None:intergenic | 5.0% |
| CTTCTTCAGGCAGTGATGCA+TGG | - | chr2_1:63739522-63739541 | None:intergenic | 50.0% | |
| !! | GAAGTGGGAATGGGAGTGTT+GGG | - | chr2_1:63739565-63739584 | None:intergenic | 50.0% |
| ! | AGAAGTGGGAATGGGAGTGT+TGG | - | chr2_1:63739566-63739585 | None:intergenic | 50.0% |
| !! | CTTCTAAAGCCTGGACCTCA+AGG | + | chr2_1:63739595-63739614 | Msa0217160:CDS | 50.0% |
| AAAATTCCTGGCTCCACCAC+TGG | + | chr2_1:63740156-63740175 | Msa0217160:intron | 50.0% | |
| CGTCCCTTTGCACAACCTTA+TGG | + | chr2_1:63740722-63740741 | Msa0217160:CDS | 50.0% | |
| TCTCCATCATGGACAACCCA+TGG | + | chr2_1:63741277-63741296 | Msa0217160:three_prime_UTR | 50.0% | |
| CTCCATCATGGACAACCCAT+GGG | + | chr2_1:63741278-63741297 | Msa0217160:three_prime_UTR | 50.0% | |
| ! | ATCCCATGGGTTGTCCATGA+TGG | - | chr2_1:63741283-63741302 | None:intergenic | 50.0% |
| GATGTGCAGCTTGCACTTGC+AGG | + | chr2_1:63739490-63739509 | Msa0217160:intron | 55.0% | |
| TGTCAACCTCTGCTGCAGCC+AGG | + | chr2_1:63739962-63739981 | Msa0217160:intron | 60.0% | |
| GTCAACCTCTGCTGCAGCCA+GGG | + | chr2_1:63739963-63739982 | Msa0217160:intron | 60.0% | |
| TCAACCTCTGCTGCAGCCAG+GGG | + | chr2_1:63739964-63739983 | Msa0217160:intron | 60.0% | |
| ATTGAGCCCAGACGAGTGCC+CGG | - | chr2_1:63740011-63740030 | None:intergenic | 60.0% | |
| TTGAGCCCAGACGAGTGCCC+GGG | - | chr2_1:63740010-63740029 | None:intergenic | 65.0% | |
| CCTACAGCTGCAGCCAGTGG+TGG | - | chr2_1:63740172-63740191 | None:intergenic | 65.0% | |
| ! | CCACCACTGGCTGCAGCTGT+AGG | + | chr2_1:63740169-63740188 | Msa0217160:intron | 65.0% |
| GGTCCTACAGCTGCAGCCAG+TGG | - | chr2_1:63740175-63740194 | None:intergenic | 65.0% | |
| TTCGCCCCTGGCTGCAGCAG+AGG | - | chr2_1:63739971-63739990 | None:intergenic | 70.0% | |
| TCTGCTGCAGCCAGGGGCGA+AGG | + | chr2_1:63739970-63739989 | Msa0217160:intron | 70.0% | |
| ! | CTGCAGCCAGTGGTGGAGCC+AGG | - | chr2_1:63740165-63740184 | None:intergenic | 70.0% |
| !! | CCAGGGGCGAAGGCACCACC+CGG | + | chr2_1:63739980-63739999 | Msa0217160:intron | 75.0% |
| ! | AAGGCACCACCCGGCGAGCC+CGG | + | chr2_1:63739989-63740008 | Msa0217160:intron | 75.0% |
| AGACGAGTGCCCGGGCTCGC+CGG | - | chr2_1:63740002-63740021 | None:intergenic | 75.0% | |
| GCGAGCCCGGGCACTCGTCT+GGG | + | chr2_1:63740002-63740021 | Msa0217160:intron | 75.0% | |
| ! | CCGGGTGGTGCCTTCGCCCC+TGG | - | chr2_1:63739983-63740002 | None:intergenic | 80.0% |
| ! | AGGCACCACCCGGCGAGCCC+GGG | + | chr2_1:63739990-63740009 | Msa0217160:intron | 80.0% |
| ! | GACGAGTGCCCGGGCTCGCC+GGG | - | chr2_1:63740001-63740020 | None:intergenic | 80.0% |
| ! | GGCGAGCCCGGGCACTCGTC+TGG | + | chr2_1:63740001-63740020 | Msa0217160:intron | 80.0% |
| ! | GAGTGCCCGGGCTCGCCGGG+TGG | - | chr2_1:63739998-63740017 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 63739025 | 63741667 | 63739025 | ID=Msa0217160;Name=Msa0217160 |
| chr2_1 | mRNA | 63739025 | 63741667 | 63739025 | ID=Msa0217160-mRNA-1;Parent=Msa0217160;Name=Msa0217160-mRNA-1;_AED=0.08;_eAED=0.08;_QI=43|1|1|1|1|1|3|397|273 |
| chr2_1 | exon | 63739025 | 63739109 | 63739025 | ID=Msa0217160-mRNA-1:exon:17690;Parent=Msa0217160-mRNA-1 |
| chr2_1 | exon | 63739499 | 63739616 | 63739499 | ID=Msa0217160-mRNA-1:exon:17691;Parent=Msa0217160-mRNA-1 |
| chr2_1 | exon | 63740609 | 63741667 | 63740609 | ID=Msa0217160-mRNA-1:exon:17692;Parent=Msa0217160-mRNA-1 |
| chr2_1 | five_prime_UTR | 63739025 | 63739067 | 63739025 | ID=Msa0217160-mRNA-1:five_prime_utr;Parent=Msa0217160-mRNA-1 |
| chr2_1 | CDS | 63739068 | 63739109 | 63739068 | ID=Msa0217160-mRNA-1:cds;Parent=Msa0217160-mRNA-1 |
| chr2_1 | CDS | 63739499 | 63739616 | 63739499 | ID=Msa0217160-mRNA-1:cds;Parent=Msa0217160-mRNA-1 |
| chr2_1 | CDS | 63740609 | 63741270 | 63740609 | ID=Msa0217160-mRNA-1:cds;Parent=Msa0217160-mRNA-1 |
| chr2_1 | three_prime_UTR | 63741271 | 63741667 | 63741271 | ID=Msa0217160-mRNA-1:three_prime_utr;Parent=Msa0217160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
