AlfalfaGEDB | Msa1385290

M. sativa cultivar zhongmu-4 / Msa1385290

KEGG: -
GO: -
PFAM: PF03181.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385290	XP_003596535.2	94.872	273	14	0	1	273	1	273	0.0	548

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385290	sp\|P21747\|EA92_VICFA	43.382	272	139	7	1	265	1	264	8.15e-69	216

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385290	G7ITL0	94.872	273	14	0	1	273	1	273	0.0	548

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0217110	Msa1385290	0.849400	3.313454e-60	-8.615850e-47
Msa0217130	Msa1385290	0.984815	1.137470e-161	-8.615850e-47
Msa0217160	Msa1385290	0.982512	2.773121e-155	-8.615850e-47
Msa0256730	Msa1385290	0.955296	4.208204e-113	-8.615850e-47
Msa0296220	Msa1385290	0.938532	5.763810e-99	-8.615850e-47
Msa0296290	Msa1385290	0.809265	2.061284e-50	-8.615850e-47
Msa1385290	Msa1385330	0.998801	3.853068e-277	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385290	MtrunA17_Chr2g0318901	94.872	273	14	0	1	273	1	273	0.0	548
Msa1385290	MtrunA17_Chr2g0318871	83.516	273	45	0	1	273	1	273	2.40e-176	486
Msa1385290	MtrunA17_Chr2g0318931	63.941	269	88	5	1	261	5	272	1.11e-123	353
Msa1385290	MtrunA17_Chr8g0355861	45.149	268	132	7	1	260	1	261	4.08e-78	238
Msa1385290	MtrunA17_Chr8g0355321	37.540	309	129	6	10	260	1	303	1.49e-73	227
Msa1385290	MtrunA17_Chr1g0168781	42.435	271	142	6	1	264	1	264	3.16e-72	222
Msa1385290	MtrunA17_Chr8g0355871	45.918	196	97	3	71	259	29	222	1.20e-60	192
Msa1385290	MtrunA17_Chr8g0355311	49.412	170	79	2	96	265	34	196	7.79e-58	183
Msa1385290	MtrunA17_Chr8g0355841	53.165	158	73	1	111	268	362	518	1.33e-57	192
Msa1385290	MtrunA17_Chr8g0355331	45.882	170	85	2	97	266	266	428	1.56e-53	179

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385290	AT5G25610.1	33.036	224	121	8	63	257	166	389	4.08e-29	114
Msa1385290	AT1G49320.1	35.135	148	81	5	126	258	131	278	1.23e-16	78.2

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Find 65 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATCATCGATAAGACT+CGG	0.638308	tig0020728:-30715	None:intergenic
AAACCTGTTTGTCATTTCCT+TGG	0.406653	tig0020728:+30371	Msa1385290:CDS
AAATAACAACCTTGAGGTCC+AGG	0.452077	tig0020728:-28797	None:intergenic
AAATCCGATTAATGTTCCTA+AGG	0.524830	tig0020728:-30051	None:intergenic
AAATCCTTAGGAACATTAAT+CGG	0.372556	tig0020728:+30047	Msa1385290:CDS
AACACCATAAGGTTGTGCAA+AGG	0.645055	tig0020728:-29919	None:intergenic
AACAGCAACATTGGCACCAT+AGG	0.567015	tig0020728:-30438	None:intergenic
AACCTTATGGTGTTTATACA+TGG	0.471062	tig0020728:+29928	Msa1385290:CDS
AAGAATATTGGGAAGCTGTT+TGG	0.356329	tig0020728:+28732	Msa1385290:CDS
ACACCATAAGGTTGTGCAAA+GGG	0.481077	tig0020728:-29918	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGTTCTTAAGTGTTTAG+AGG	-	tig0020728:28351-28370	None:intergenic	30.0%
TCTAAACACTTAAGAACTCT+TGG	+	tig0020728:28350-28369	Msa1385290:intron	30.0%
AGGTTGACAAATTTGAATGT+TGG	-	tig0020728:29144-29163	None:intergenic	30.0%
TAAATTTAGAAAGAGACCCT+TGG	-	tig0020728:29415-29434	None:intergenic	30.0%
TGTGAGTTTCATAAATTTGG+AGG	-	tig0020728:29654-29673	None:intergenic	30.0%
TATGAACATGAACTTTATCC+TGG	+	tig0020728:29864-29883	Msa1385290:CDS	30.0%
AACCTTATGGTGTTTATACA+TGG	+	tig0020728:29928-29947	Msa1385290:CDS	30.0%
ATCCATGTATAAACACCATA+AGG	-	tig0020728:29933-29952	None:intergenic	30.0%
AGAAGGATACACATTTAATG+AGG	+	tig0020728:29977-29996	Msa1385290:CDS	30.0%
AAATCCGATTAATGTTCCTA+AGG	-	tig0020728:30054-30073	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020728	gene	28267	30860	28267	ID=Msa1385290;Name=Msa1385290
tig0020728	mRNA	28267	30860	28267	ID=Msa1385290-mRNA-1;Parent=Msa1385290;Name=Msa1385290-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|1\|0.66\|1\|1\|1\|3\|397\|273
tig0020728	exon	28267	28308	28267	ID=Msa1385290-mRNA-1:exon:9522;Parent=Msa1385290-mRNA-1
tig0020728	exon	28692	28809	28692	ID=Msa1385290-mRNA-1:exon:9523;Parent=Msa1385290-mRNA-1
tig0020728	exon	29802	30860	29802	ID=Msa1385290-mRNA-1:exon:9524;Parent=Msa1385290-mRNA-1
tig0020728	CDS	28267	28308	28267	ID=Msa1385290-mRNA-1:cds;Parent=Msa1385290-mRNA-1
tig0020728	CDS	28692	28809	28692	ID=Msa1385290-mRNA-1:cds;Parent=Msa1385290-mRNA-1
tig0020728	CDS	29802	30463	29802	ID=Msa1385290-mRNA-1:cds;Parent=Msa1385290-mRNA-1
tig0020728	three_prime_UTR	30464	30860	30464	ID=Msa1385290-mRNA-1:three_prime_utr;Parent=Msa1385290-mRNA-1

Gene Sequence

>Msa1385290

ATGGGATTTCATCACCTTCTCGTTTTCATTTCAGTTCTCTCTCTTGCACTTGCAGGAGAAAGCCATGCATCACTGCCTGAAGAAGAATATTGGGAAGCTGTTTGGCCCAACACTCCCATTCCCACTTCTCTTCGAGAACTTCTAAAGCCTGGACCTCAAGGTGTTGAAATTGATGACCACCCCATGGAAATTGATGACACACAATACCCAAAAACATTTTTCTATGAACATGAACTTTATCCTGGCAAAACAATGAAAGTGCAATTCAGCAAGCGTCCCTTTGCACAACCTTATGGTGTTTATACATGGATGCGTGAAATTAAAGACATTGAAAAAGAAGGATACACATTTAATGAGGTATGTGTAAAGAAAGCAGCTGCAGAAGGAGAACAAAAATTTTGTGCAAAATCCTTAGGAACATTAATCGGATTTGCAATTTCTAAGCTTGGAAAAAATATTCAAGCACTTTCAAGTTCCTTCATAGATAAGCATGAACAATACAAAATAGAGTCAGTGCAAAATCTTGGAGAGAAAGCAGTTATGTGTCATAGGTTGAATTTCCAAAAGGTTGTATTTTATTGTCATGAAATTCATGGAACAACAGCTTTTATGGTTCCATTGGTGGCTAATGATGGAACAAAAACTCAAGCTCTAGCTGTTTGTCATGCTGATACTTCAGGCATGAATCATGAAATGTTGCAACAGATTATGAAAGCTGATCCTGGTAGTAAACCTGTTTGTCATTTCCTTGGAAATAAGGCTATTTTATGGGTACCTAATTTAGGTTTGGACAATGCCTATGGTGCCAATGTTGCTGTTTAG

Protein sequence

>Msa1385290

MGFHHLLVFISVLSLALAGESHASLPEEEYWEAVWPNTPIPTSLRELLKPGPQGVEIDDHPMEIDDTQYPKTFFYEHELYPGKTMKVQFSKRPFAQPYGVYTWMREIKDIEKEGYTFNEVCVKKAAAEGEQKFCAKSLGTLIGFAISKLGKNIQALSSSFIDKHEQYKIESVQNLGEKAVMCHRLNFQKVVFYCHEIHGTTAFMVPLVANDGTKTQALAVCHADTSGMNHEMLQQIMKADPGSKPVCHFLGNKAILWVPNLGLDNAYGANVAV*