Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217130 | XP_003596535.2 | 94.872 | 273 | 14 | 0 | 1 | 273 | 1 | 273 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217130 | sp|P21747|EA92_VICFA | 43.382 | 272 | 139 | 7 | 1 | 265 | 1 | 264 | 8.15e-69 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217130 | G7ITL0 | 94.872 | 273 | 14 | 0 | 1 | 273 | 1 | 273 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0217110 | Msa0217130 | 0.863685 | 2.086543e-64 | -8.615850e-47 |
| Msa0217130 | Msa0217160 | 0.998647 | 1.238490e-271 | -8.615850e-47 |
| Msa0217130 | Msa0256730 | 0.971947 | 5.681184e-134 | -8.615850e-47 |
| Msa0217130 | Msa0296220 | 0.954689 | 1.679334e-112 | -8.615850e-47 |
| Msa0217130 | Msa0296290 | 0.802256 | 6.115265e-49 | -8.615850e-47 |
| Msa0217130 | Msa1385290 | 0.984815 | 1.137470e-161 | -8.615850e-47 |
| Msa0217130 | Msa1385330 | 0.986320 | 2.143775e-166 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217130 | MtrunA17_Chr2g0318901 | 94.872 | 273 | 14 | 0 | 1 | 273 | 1 | 273 | 0.0 | 548 |
| Msa0217130 | MtrunA17_Chr2g0318871 | 83.516 | 273 | 45 | 0 | 1 | 273 | 1 | 273 | 2.40e-176 | 486 |
| Msa0217130 | MtrunA17_Chr2g0318931 | 63.941 | 269 | 88 | 5 | 1 | 261 | 5 | 272 | 1.11e-123 | 353 |
| Msa0217130 | MtrunA17_Chr8g0355861 | 45.149 | 268 | 132 | 7 | 1 | 260 | 1 | 261 | 4.08e-78 | 238 |
| Msa0217130 | MtrunA17_Chr8g0355321 | 37.540 | 309 | 129 | 6 | 10 | 260 | 1 | 303 | 1.49e-73 | 227 |
| Msa0217130 | MtrunA17_Chr1g0168781 | 42.435 | 271 | 142 | 6 | 1 | 264 | 1 | 264 | 3.16e-72 | 222 |
| Msa0217130 | MtrunA17_Chr8g0355871 | 45.918 | 196 | 97 | 3 | 71 | 259 | 29 | 222 | 1.20e-60 | 192 |
| Msa0217130 | MtrunA17_Chr8g0355311 | 49.412 | 170 | 79 | 2 | 96 | 265 | 34 | 196 | 7.79e-58 | 183 |
| Msa0217130 | MtrunA17_Chr8g0355841 | 53.165 | 158 | 73 | 1 | 111 | 268 | 362 | 518 | 1.33e-57 | 192 |
| Msa0217130 | MtrunA17_Chr8g0355331 | 45.882 | 170 | 85 | 2 | 97 | 266 | 266 | 428 | 1.56e-53 | 179 |
| Msa0217130 | MtrunA17_Chr8g0355831 | 55.333 | 150 | 66 | 1 | 111 | 260 | 204 | 352 | 1.16e-51 | 172 |
| Msa0217130 | MtrunA17_Chr3g0139431 | 31.889 | 323 | 145 | 12 | 6 | 259 | 5 | 321 | 1.60e-44 | 153 |
| Msa0217130 | MtrunA17_Chr1g0147261 | 33.663 | 303 | 149 | 12 | 1 | 257 | 1 | 297 | 2.10e-44 | 152 |
| Msa0217130 | MtrunA17_Chr1g0147311 | 28.746 | 327 | 158 | 9 | 5 | 258 | 30 | 354 | 1.89e-39 | 140 |
| Msa0217130 | MtrunA17_Chr1g0147331 | 29.538 | 325 | 153 | 11 | 5 | 258 | 4 | 323 | 3.10e-38 | 136 |
| Msa0217130 | MtrunA17_Chr1g0147241 | 30.671 | 313 | 158 | 12 | 1 | 257 | 1 | 310 | 1.02e-37 | 135 |
| Msa0217130 | MtrunA17_Chr1g0146631 | 28.923 | 325 | 155 | 11 | 5 | 258 | 4 | 323 | 7.25e-37 | 133 |
| Msa0217130 | MtrunA17_Chr1g0147291 | 32.456 | 228 | 126 | 9 | 57 | 258 | 40 | 265 | 5.96e-31 | 116 |
| Msa0217130 | MtrunA17_Chr1g0147301 | 32.618 | 233 | 123 | 10 | 57 | 258 | 54 | 283 | 7.58e-31 | 116 |
| Msa0217130 | MtrunA17_Chr1g0147271 | 34.579 | 214 | 111 | 7 | 73 | 258 | 171 | 383 | 3.17e-30 | 116 |
| Msa0217130 | MtrunA17_Chr1g0147321 | 32.456 | 228 | 126 | 9 | 56 | 257 | 10 | 235 | 3.78e-30 | 114 |
| Msa0217130 | MtrunA17_Chr1g0147251 | 31.278 | 227 | 123 | 6 | 58 | 257 | 20 | 240 | 5.99e-30 | 112 |
| Msa0217130 | MtrunA17_Chr3g0144421 | 28.879 | 232 | 130 | 10 | 59 | 259 | 75 | 302 | 3.25e-19 | 85.5 |
| Msa0217130 | MtrunA17_Chr4g0034821 | 29.778 | 225 | 116 | 11 | 73 | 261 | 75 | 293 | 5.11e-18 | 82.0 |
| Msa0217130 | MtrunA17_Chr3g0138231 | 31.250 | 144 | 89 | 4 | 128 | 261 | 125 | 268 | 2.18e-15 | 74.3 |
| Msa0217130 | MtrunA17_Chr4g0034731 | 32.867 | 143 | 84 | 5 | 129 | 259 | 290 | 432 | 1.50e-14 | 73.2 |
| Msa0217130 | MtrunA17_Chr3g0144451 | 32.639 | 144 | 87 | 5 | 128 | 261 | 134 | 277 | 1.84e-14 | 71.6 |
| Msa0217130 | MtrunA17_Chr4g0034721 | 34.266 | 143 | 82 | 6 | 129 | 259 | 434 | 576 | 2.76e-14 | 72.4 |
| Msa0217130 | MtrunA17_Chr4g0076231 | 26.897 | 145 | 95 | 5 | 123 | 257 | 13 | 156 | 7.69e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0217130 | AT5G25610.1 | 33.036 | 224 | 121 | 8 | 63 | 257 | 166 | 389 | 4.08e-29 | 114 |
| Msa0217130 | AT1G49320.1 | 35.135 | 148 | 81 | 5 | 126 | 258 | 131 | 278 | 1.23e-16 | 78.2 |
Find 69 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCATTTCCTTGGAAATA+AGG | 0.195752 | 2_1:+63709143 | Msa0217130:CDS |
| GCAAAGATTGTGCCTCTTTA+GGG | 0.226798 | 2_1:-63709352 | None:intergenic |
| AGCAAAGATTGTGCCTCTTT+AGG | 0.246185 | 2_1:-63709353 | None:intergenic |
| GACAATAAAATACAACCTTT+TGG | 0.266567 | 2_1:-63708966 | None:intergenic |
| ATTGAAATCAGAAAATTTAG+AGG | 0.297761 | 2_1:+63709583 | Msa0217130:three_prime_UTR |
| CGTCCCTTTGCACAACCTTA+TGG | 0.298036 | 2_1:+63708679 | Msa0217130:CDS |
| CACTGCCTGAAGAAGAATAT+TGG | 0.300262 | 2_1:+63707484 | Msa0217130:CDS |
| TGGTGCCAATGTTGCTGTTT+AGG | 0.323097 | 2_1:+63709206 | Msa0217130:CDS |
| GCTTCCCAATATTCTTCTTC+AGG | 0.355894 | 2_1:-63707489 | None:intergenic |
| AAGAATATTGGGAAGCTGTT+TGG | 0.356329 | 2_1:+63707496 | Msa0217130:CDS |
| TCCCTTGTTGATTTCAAGAA+TGG | 0.360833 | 2_1:+63707005 | Msa0217130:exon |
| GCATTGTCCAAACCTAAATT+AGG | 0.363667 | 2_1:-63709180 | None:intergenic |
| AAATCCTTAGGAACATTAAT+CGG | 0.372556 | 2_1:+63708811 | Msa0217130:CDS |
| GTTTGTCATGCTGATACTTC+AGG | 0.375794 | 2_1:+63709063 | Msa0217130:CDS |
| GGATTTGCAATTTCTAAGCT+TGG | 0.386794 | 2_1:+63708832 | Msa0217130:CDS |
| TATGAACATGAACTTTATCC+TGG | 0.401999 | 2_1:+63708628 | Msa0217130:CDS |
| CCCTTGTTGATTTCAAGAAT+GGG | 0.405370 | 2_1:+63707006 | Msa0217130:exon |
| AAACCTGTTTGTCATTTCCT+TGG | 0.406653 | 2_1:+63709135 | Msa0217130:CDS |
| GATGTGCAGCTTGCACTTGC+AGG | 0.411503 | 2_1:+63707447 | Msa0217130:intron |
| ACTGCCTGAAGAAGAATATT+GGG | 0.412787 | 2_1:+63707485 | Msa0217130:CDS |
| TCTAGCTTAATTAGCTAGAA+AGG | 0.415491 | 2_1:-63709304 | None:intergenic |
| ATAGAGTCAGTGCAAAATCT+TGG | 0.422753 | 2_1:+63708910 | Msa0217130:CDS |
| ATGGGTACCTAATTTAGGTT+TGG | 0.424424 | 2_1:+63709173 | Msa0217130:CDS |
| TTGTGTGTCATCAATTTCCA+TGG | 0.427694 | 2_1:-63708587 | None:intergenic |
| AGAAAGCAGTTATGTGTCAT+AGG | 0.437124 | 2_1:+63708935 | Msa0217130:CDS |
| TTGTTCATGCTTATCTATGA+AGG | 0.440092 | 2_1:-63708881 | None:intergenic |
| AAATAACAACCTTGAGGTCC+AGG | 0.452077 | 2_1:-63707561 | None:intergenic |
| TAGAAGTTCTCGAAGAGAAG+TGG | 0.456535 | 2_1:-63707535 | None:intergenic |
| TTTCCAAGGAAATGACAAAC+AGG | 0.462441 | 2_1:-63709138 | None:intergenic |
| CTAGCTAATTAAGCTAGAGT+TGG | 0.466469 | 2_1:+63709309 | Msa0217130:three_prime_UTR |
| CATGTTATAATATGATGAAA+TGG | 0.470529 | 2_1:+63709392 | Msa0217130:three_prime_UTR |
| AACCTTATGGTGTTTATACA+TGG | 0.471062 | 2_1:+63708692 | Msa0217130:CDS |
| CTTCTTCAGGCAGTGATGCA+TGG | 0.473820 | 2_1:-63707476 | None:intergenic |
| GAAGTGGGAATGGGAGTGTT+GGG | 0.474967 | 2_1:-63707519 | None:intergenic |
| ACACCATAAGGTTGTGCAAA+GGG | 0.481077 | 2_1:-63708682 | None:intergenic |
| TTAGGTTTGGACAATGCCTA+TGG | 0.494021 | 2_1:+63709186 | Msa0217130:CDS |
| TTCTCGAAGAGAAGTGGGAA+TGG | 0.495855 | 2_1:-63707529 | None:intergenic |
| CTTCGAGAACTTCTAAAGCC+TGG | 0.497324 | 2_1:+63707543 | Msa0217130:CDS |
| ATAAAATAGCCTTATTTCCA+AGG | 0.498608 | 2_1:-63709152 | None:intergenic |
| ATCCCATGGGTTGTCCATGA+TGG | 0.500990 | 2_1:-63709237 | None:intergenic |
| ATCCATGTATAAACACCATA+AGG | 0.501910 | 2_1:-63708694 | None:intergenic |
| AGAAGTGGGAATGGGAGTGT+TGG | 0.505103 | 2_1:-63707520 | None:intergenic |
| GTTCCATCATTAGCCACCAA+TGG | 0.510862 | 2_1:-63709021 | None:intergenic |
| TCATAGGTTGAATTTCCAAA+AGG | 0.512621 | 2_1:+63708951 | Msa0217130:CDS |
| CAGATTATGAAAGCTGATCC+TGG | 0.522799 | 2_1:+63709108 | Msa0217130:CDS |
| ATTTATGTTACACAATCCCA+TGG | 0.523591 | 2_1:-63709251 | None:intergenic |
| AAATCCGATTAATGTTCCTA+AGG | 0.524830 | 2_1:-63708815 | None:intergenic |
| GTTCCATTGGTGGCTAATGA+TGG | 0.535070 | 2_1:+63709018 | Msa0217130:CDS |
| TGTGTGTCATCAATTTCCAT+GGG | 0.537514 | 2_1:-63708586 | None:intergenic |
| TCTCGAAGAGAAGTGGGAAT+GGG | 0.548515 | 2_1:-63707528 | None:intergenic |
| CTTCTAAAGCCTGGACCTCA+AGG | 0.560362 | 2_1:+63707552 | Msa0217130:CDS |
| AACAGCAACATTGGCACCAT+AGG | 0.567015 | 2_1:-63709202 | None:intergenic |
| AGAAGTTCTCGAAGAGAAGT+GGG | 0.572137 | 2_1:-63707534 | None:intergenic |
| TCTCCATCATGGACAACCCA+TGG | 0.575120 | 2_1:+63709234 | Msa0217130:three_prime_UTR |
| GTAAAGAAAGCAGCTGCAGA+AGG | 0.576977 | 2_1:+63708769 | Msa0217130:CDS |
| GTACTCCTAAACAGCAACAT+TGG | 0.581094 | 2_1:-63709211 | None:intergenic |
| AGAAGGATACACATTTAATG+AGG | 0.587845 | 2_1:+63708741 | Msa0217130:CDS |
| TTTAGGAGTACTCTCCATCA+TGG | 0.588077 | 2_1:+63709223 | Msa0217130:exon |
| CTCCATCATGGACAACCCAT+GGG | 0.596865 | 2_1:+63709235 | Msa0217130:three_prime_UTR |
| TGTCATCAATTTCCATGGGG+TGG | 0.605445 | 2_1:-63708582 | None:intergenic |
| GAACTGAAATGAAAACGAGA+AGG | 0.613747 | 2_1:-63707038 | None:intergenic |
| TTTATGTTACACAATCCCAT+GGG | 0.616443 | 2_1:-63709250 | None:intergenic |
| TGACAAACAGGTTTACTACC+AGG | 0.616609 | 2_1:-63709126 | None:intergenic |
| CCCATTCTTGAAATCAACAA+GGG | 0.626455 | 2_1:-63707006 | None:intergenic |
| TCCCATTCTTGAAATCAACA+AGG | 0.627989 | 2_1:-63707007 | None:intergenic |
| AAAATATCATCGATAAGACT+CGG | 0.638308 | 2_1:-63709479 | None:intergenic |
| AACACCATAAGGTTGTGCAA+AGG | 0.645055 | 2_1:-63708683 | None:intergenic |
| TGAAATTGATGACCACCCCA+TGG | 0.663021 | 2_1:+63708570 | Msa0217130:CDS |
| GTGTGTCATCAATTTCCATG+GGG | 0.716189 | 2_1:-63708585 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCACAATATTAATTAATAT+AGG | - | chr2_1:63707663-63707682 | None:intergenic | 10.0% |
| !!! | TAATCCTTTATTAATTTTAT+TGG | + | chr2_1:63707768-63707787 | Msa0217130:intron | 10.0% |
| !!! | CATTTAAAATATAAAAAAGT+TGG | + | chr2_1:63708021-63708040 | Msa0217130:intron | 10.0% |
| !! | ACATTATTAATTTATTTGTT+AGG | - | chr2_1:63708262-63708281 | None:intergenic | 10.0% |
| !! | TGATCCAATAAAATTAATAA+AGG | - | chr2_1:63707775-63707794 | None:intergenic | 15.0% |
| !! | ATCGATATTTACTTTATATT+TGG | + | chr2_1:63707986-63708005 | Msa0217130:intron | 15.0% |
| !!! | TATTTTAAATGTATTAGGTT+GGG | - | chr2_1:63708012-63708031 | None:intergenic | 15.0% |
| !!! | ATATTTTAAATGTATTAGGT+TGG | - | chr2_1:63708013-63708032 | None:intergenic | 15.0% |
| !! | TATTTGTCATATAAATTGAA+TGG | - | chr2_1:63708153-63708172 | None:intergenic | 15.0% |
| !! | TTTATTAGTTAAAATTCAGA+TGG | + | chr2_1:63708390-63708409 | Msa0217130:intron | 15.0% |
| !! | TTATTAGTTAAAATTCAGAT+GGG | + | chr2_1:63708391-63708410 | Msa0217130:intron | 15.0% |
| !!! | TAACACATATTCTTTTTTAT+TGG | - | chr2_1:63708470-63708489 | None:intergenic | 15.0% |
| !! | AAAGAATATGTGTTAAATTA+TGG | + | chr2_1:63708475-63708494 | Msa0217130:intron | 15.0% |
| !!! | TTTCGTAAGTAAATATTTTT+AGG | + | chr2_1:63709441-63709460 | Msa0217130:three_prime_UTR | 15.0% |
| !!! | TTCGTAAGTAAATATTTTTA+GGG | + | chr2_1:63709442-63709461 | Msa0217130:three_prime_UTR | 15.0% |
| !! | TTAAACAACAACCTAAAATA+TGG | + | chr2_1:63707160-63707179 | Msa0217130:intron | 20.0% |
| !!! | TACTTTAATTGCCATATTTT+AGG | - | chr2_1:63707174-63707193 | None:intergenic | 20.0% |
| !! | ATTATTACTTACATATGTTG+AGG | + | chr2_1:63707210-63707229 | Msa0217130:intron | 20.0% |
| !! | TTATTACTTACATATGTTGA+GGG | + | chr2_1:63707211-63707230 | Msa0217130:intron | 20.0% |
| !! | AAAATTAAATAACAACCTTG+AGG | - | chr2_1:63707570-63707589 | None:intergenic | 20.0% |
| !!! | TCAGAAAAGGTAAATTTTAT+GGG | + | chr2_1:63707710-63707729 | Msa0217130:intron | 20.0% |
| !! | TTATATGACAAATAATTCCA+AGG | + | chr2_1:63708159-63708178 | Msa0217130:intron | 20.0% |
| !! | TATATGACAAATAATTCCAA+GGG | + | chr2_1:63708160-63708179 | Msa0217130:intron | 20.0% |
| !!! | AATTTATTTGTTAGGATGAA+AGG | - | chr2_1:63708254-63708273 | None:intergenic | 20.0% |
| !! | TCTCTCAAGTTATATATTAT+TGG | - | chr2_1:63708288-63708307 | None:intergenic | 20.0% |
| !!! | TATTTTAAACCCATGTATTA+TGG | + | chr2_1:63708538-63708557 | Msa0217130:intron | 20.0% |
| !!! | GTTCATAGAAAAATGTTTTT+GGG | - | chr2_1:63708615-63708634 | None:intergenic | 20.0% |
| !!! | TGTTCATAGAAAAATGTTTT+TGG | - | chr2_1:63708616-63708635 | None:intergenic | 20.0% |
| !! | ATTAAAGACATTGAAAAAGA+AGG | + | chr2_1:63708724-63708743 | Msa0217130:CDS | 20.0% |
| !!! | TTTTATTGTCATGAAATTCA+TGG | + | chr2_1:63708979-63708998 | Msa0217130:CDS | 20.0% |
| !! | CATGTTATAATATGATGAAA+TGG | + | chr2_1:63709392-63709411 | Msa0217130:three_prime_UTR | 20.0% |
| !!! | TTTTTAGGGTTAAATATGTT+TGG | + | chr2_1:63709456-63709475 | Msa0217130:three_prime_UTR | 20.0% |
| !! | CAATAACATGTCATAAAAAA+AGG | + | chr2_1:63709512-63709531 | Msa0217130:three_prime_UTR | 20.0% |
| !! | ATTGAAATCAGAAAATTTAG+AGG | + | chr2_1:63709583-63709602 | Msa0217130:three_prime_UTR | 20.0% |
| ! | TAAGTTTATAGTACATCAGT+TGG | - | chr2_1:63707143-63707162 | None:intergenic | 25.0% |
| ! | GTAAGAAATAAACTCAGAAA+AGG | + | chr2_1:63707697-63707716 | Msa0217130:intron | 25.0% |
| !! | CTCAGAAAAGGTAAATTTTA+TGG | + | chr2_1:63707709-63707728 | Msa0217130:intron | 25.0% |
| ! | AGAGATGAAAAACTAATAAG+GGG | - | chr2_1:63707826-63707845 | None:intergenic | 25.0% |
| ! | CAGAGATGAAAAACTAATAA+GGG | - | chr2_1:63707827-63707846 | None:intergenic | 25.0% |
| ! | TCAGAGATGAAAAACTAATA+AGG | - | chr2_1:63707828-63707847 | None:intergenic | 25.0% |
| ! | ACAAAATTAATACTCTCCTT+CGG | - | chr2_1:63707878-63707897 | None:intergenic | 25.0% |
| !!! | AAGGAGAGTATTAATTTTGT+AGG | + | chr2_1:63707878-63707897 | Msa0217130:intron | 25.0% |
| ! | TCATGTGAGTTTCATAAATT+TGG | - | chr2_1:63708421-63708440 | None:intergenic | 25.0% |
| ! | TTTATGAAACTCACATGATT+TGG | + | chr2_1:63708423-63708442 | Msa0217130:intron | 25.0% |
| !! | AAATTTTGTGCAAAATCCTT+AGG | + | chr2_1:63708799-63708818 | Msa0217130:CDS | 25.0% |
| ! | AAATCCTTAGGAACATTAAT+CGG | + | chr2_1:63708811-63708830 | Msa0217130:CDS | 25.0% |
| !! | GACAATAAAATACAACCTTT+TGG | - | chr2_1:63708969-63708988 | None:intergenic | 25.0% |
| !!! | ATAAAATAGCCTTATTTCCA+AGG | - | chr2_1:63709155-63709174 | None:intergenic | 25.0% |
| !!! | TTGGAAATAAGGCTATTTTA+TGG | + | chr2_1:63709154-63709173 | Msa0217130:CDS | 25.0% |
| !!! | TGGAAATAAGGCTATTTTAT+GGG | + | chr2_1:63709155-63709174 | Msa0217130:CDS | 25.0% |
| !! | ATTTTATGGGTACCTAATTT+AGG | + | chr2_1:63709168-63709187 | Msa0217130:CDS | 25.0% |
| ! | AAAATATCATCGATAAGACT+CGG | - | chr2_1:63709482-63709501 | None:intergenic | 25.0% |
| !! | GTCTTATCGATGATATTTTT+AGG | + | chr2_1:63709483-63709502 | Msa0217130:three_prime_UTR | 25.0% |
| AAGAGTTCTTAAGTGTTTAG+AGG | - | chr2_1:63707108-63707127 | None:intergenic | 30.0% | |
| TCTAAACACTTAAGAACTCT+TGG | + | chr2_1:63707107-63707126 | Msa0217130:intron | 30.0% | |
| AGGTTGACAAATTTGAATGT+TGG | - | chr2_1:63707908-63707927 | None:intergenic | 30.0% | |
| ! | TGACTCTATAATTTTTGCCT+AGG | + | chr2_1:63708084-63708103 | Msa0217130:intron | 30.0% |
| TAAATTTAGAAAGAGACCCT+TGG | - | chr2_1:63708179-63708198 | None:intergenic | 30.0% | |
| ! | GAGAGATGTTATGATTTTTC+TGG | + | chr2_1:63708304-63708323 | Msa0217130:intron | 30.0% |
| TGTGAGTTTCATAAATTTGG+AGG | - | chr2_1:63708418-63708437 | None:intergenic | 30.0% | |
| TATGAACATGAACTTTATCC+TGG | + | chr2_1:63708628-63708647 | Msa0217130:CDS | 30.0% | |
| AACCTTATGGTGTTTATACA+TGG | + | chr2_1:63708692-63708711 | Msa0217130:CDS | 30.0% | |
| ATCCATGTATAAACACCATA+AGG | - | chr2_1:63708697-63708716 | None:intergenic | 30.0% | |
| AGAAGGATACACATTTAATG+AGG | + | chr2_1:63708741-63708760 | Msa0217130:CDS | 30.0% | |
| AAATCCGATTAATGTTCCTA+AGG | - | chr2_1:63708818-63708837 | None:intergenic | 30.0% | |
| TTGTTCATGCTTATCTATGA+AGG | - | chr2_1:63708884-63708903 | None:intergenic | 30.0% | |
| ! | TCATAGGTTGAATTTCCAAA+AGG | + | chr2_1:63708951-63708970 | Msa0217130:CDS | 30.0% |
| ! | TTGTCATTTCCTTGGAAATA+AGG | + | chr2_1:63709143-63709162 | Msa0217130:CDS | 30.0% |
| TTTATGTTACACAATCCCAT+GGG | - | chr2_1:63709253-63709272 | None:intergenic | 30.0% | |
| ATTTATGTTACACAATCCCA+TGG | - | chr2_1:63709254-63709273 | None:intergenic | 30.0% | |
| ! | TCTAGCTTAATTAGCTAGAA+AGG | - | chr2_1:63709307-63709326 | None:intergenic | 30.0% |
| ! | TACTTTTATGTACCCTAAAG+AGG | + | chr2_1:63709340-63709359 | Msa0217130:three_prime_UTR | 30.0% |
| !! | TCCCTTGTTGATTTCAAGAA+TGG | + | chr2_1:63707005-63707024 | Msa0217130:exon | 35.0% |
| CCCATTCTTGAAATCAACAA+GGG | - | chr2_1:63707009-63707028 | None:intergenic | 35.0% | |
| !! | CCCTTGTTGATTTCAAGAAT+GGG | + | chr2_1:63707006-63707025 | Msa0217130:exon | 35.0% |
| TCCCATTCTTGAAATCAACA+AGG | - | chr2_1:63707010-63707029 | None:intergenic | 35.0% | |
| GAACTGAAATGAAAACGAGA+AGG | - | chr2_1:63707041-63707060 | None:intergenic | 35.0% | |
| !!! | GAAATGAAAGGTTTTAGAGC+AGG | - | chr2_1:63707079-63707098 | None:intergenic | 35.0% |
| !! | TAGAGGATGATGGAAATGAA+AGG | - | chr2_1:63707091-63707110 | None:intergenic | 35.0% |
| CTTAAGTGTTTAGAGGATGA+TGG | - | chr2_1:63707101-63707120 | None:intergenic | 35.0% | |
| ACTGCCTGAAGAAGAATATT+GGG | + | chr2_1:63707485-63707504 | Msa0217130:CDS | 35.0% | |
| AAGAATATTGGGAAGCTGTT+TGG | + | chr2_1:63707496-63707515 | Msa0217130:CDS | 35.0% | |
| !! | TCTCTGAAGCTGTAATATAG+TGG | + | chr2_1:63707841-63707860 | Msa0217130:intron | 35.0% |
| !! | TTGTTAGGATGAAAGGTGTT+TGG | - | chr2_1:63708247-63708266 | None:intergenic | 35.0% |
| !! | TATGGTGTCACAGTCAAAAT+TGG | + | chr2_1:63708493-63708512 | Msa0217130:intron | 35.0% |
| TGTGTGTCATCAATTTCCAT+GGG | - | chr2_1:63708589-63708608 | None:intergenic | 35.0% | |
| TTGTGTGTCATCAATTTCCA+TGG | - | chr2_1:63708590-63708609 | None:intergenic | 35.0% | |
| GGATTTGCAATTTCTAAGCT+TGG | + | chr2_1:63708832-63708851 | Msa0217130:CDS | 35.0% | |
| ATAGAGTCAGTGCAAAATCT+TGG | + | chr2_1:63708910-63708929 | Msa0217130:CDS | 35.0% | |
| AGAAAGCAGTTATGTGTCAT+AGG | + | chr2_1:63708935-63708954 | Msa0217130:CDS | 35.0% | |
| ! | TCATGGAACAACAGCTTTTA+TGG | + | chr2_1:63708996-63709015 | Msa0217130:CDS | 35.0% |
| ! | AACAGCTTTTATGGTTCCAT+TGG | + | chr2_1:63709005-63709024 | Msa0217130:CDS | 35.0% |
| ! | AAACCTGTTTGTCATTTCCT+TGG | + | chr2_1:63709135-63709154 | Msa0217130:CDS | 35.0% |
| TTTCCAAGGAAATGACAAAC+AGG | - | chr2_1:63709141-63709160 | None:intergenic | 35.0% | |
| ! | ATGGGTACCTAATTTAGGTT+TGG | + | chr2_1:63709173-63709192 | Msa0217130:CDS | 35.0% |
| GCATTGTCCAAACCTAAATT+AGG | - | chr2_1:63709183-63709202 | None:intergenic | 35.0% | |
| CTAGCTAATTAAGCTAGAGT+TGG | + | chr2_1:63709309-63709328 | Msa0217130:three_prime_UTR | 35.0% | |
| ACTTACATATGTTGAGGGTG+TGG | + | chr2_1:63707216-63707235 | Msa0217130:intron | 40.0% | |
| ! | CTTACATATGTTGAGGGTGT+GGG | + | chr2_1:63707217-63707236 | Msa0217130:intron | 40.0% |
| ! | TTACATATGTTGAGGGTGTG+GGG | + | chr2_1:63707218-63707237 | Msa0217130:intron | 40.0% |
| CACTGCCTGAAGAAGAATAT+TGG | + | chr2_1:63707484-63707503 | Msa0217130:CDS | 40.0% | |
| GCTTCCCAATATTCTTCTTC+AGG | - | chr2_1:63707492-63707511 | None:intergenic | 40.0% | |
| AGAAGTTCTCGAAGAGAAGT+GGG | - | chr2_1:63707537-63707556 | None:intergenic | 40.0% | |
| TAGAAGTTCTCGAAGAGAAG+TGG | - | chr2_1:63707538-63707557 | None:intergenic | 40.0% | |
| AAATAACAACCTTGAGGTCC+AGG | - | chr2_1:63707564-63707583 | None:intergenic | 40.0% | |
| AGTGGTATTGTTGAATCCGA+AGG | + | chr2_1:63707859-63707878 | Msa0217130:intron | 40.0% | |
| ! | CCAGGAATTTTGTAAAGCCT+AGG | - | chr2_1:63708104-63708123 | None:intergenic | 40.0% |
| CCTAGGCTTTACAAAATTCC+TGG | + | chr2_1:63708101-63708120 | Msa0217130:intron | 40.0% | |
| TACAGCACCATACTGTACAT+CGG | + | chr2_1:63708213-63708232 | Msa0217130:intron | 40.0% | |
| AAACCCATGTATTATGGCAC+AGG | + | chr2_1:63708544-63708563 | Msa0217130:intron | 40.0% | |
| ACACCTGTGCCATAATACAT+GGG | - | chr2_1:63708550-63708569 | None:intergenic | 40.0% | |
| AACACCTGTGCCATAATACA+TGG | - | chr2_1:63708551-63708570 | None:intergenic | 40.0% | |
| GTGTGTCATCAATTTCCATG+GGG | - | chr2_1:63708588-63708607 | None:intergenic | 40.0% | |
| !! | TGCACTTTCATTGTTTTGCC+AGG | - | chr2_1:63708649-63708668 | None:intergenic | 40.0% |
| ACACCATAAGGTTGTGCAAA+GGG | - | chr2_1:63708685-63708704 | None:intergenic | 40.0% | |
| AACACCATAAGGTTGTGCAA+AGG | - | chr2_1:63708686-63708705 | None:intergenic | 40.0% | |
| ! | AGCTTTTATGGTTCCATTGG+TGG | + | chr2_1:63709008-63709027 | Msa0217130:CDS | 40.0% |
| GTTTGTCATGCTGATACTTC+AGG | + | chr2_1:63709063-63709082 | Msa0217130:CDS | 40.0% | |
| CAGATTATGAAAGCTGATCC+TGG | + | chr2_1:63709108-63709127 | Msa0217130:CDS | 40.0% | |
| TGACAAACAGGTTTACTACC+AGG | - | chr2_1:63709129-63709148 | None:intergenic | 40.0% | |
| TTAGGTTTGGACAATGCCTA+TGG | + | chr2_1:63709186-63709205 | Msa0217130:CDS | 40.0% | |
| GTACTCCTAAACAGCAACAT+TGG | - | chr2_1:63709214-63709233 | None:intergenic | 40.0% | |
| !! | TTTAGGAGTACTCTCCATCA+TGG | + | chr2_1:63709223-63709242 | Msa0217130:exon | 40.0% |
| GCAAAGATTGTGCCTCTTTA+GGG | - | chr2_1:63709355-63709374 | None:intergenic | 40.0% | |
| AGCAAAGATTGTGCCTCTTT+AGG | - | chr2_1:63709356-63709375 | None:intergenic | 40.0% | |
| ! | TACATATGTTGAGGGTGTGG+GGG | + | chr2_1:63707219-63707238 | Msa0217130:intron | 45.0% |
| TCTCGAAGAGAAGTGGGAAT+GGG | - | chr2_1:63707531-63707550 | None:intergenic | 45.0% | |
| TTCTCGAAGAGAAGTGGGAA+TGG | - | chr2_1:63707532-63707551 | None:intergenic | 45.0% | |
| !! | CTTCGAGAACTTCTAAAGCC+TGG | + | chr2_1:63707543-63707562 | Msa0217130:CDS | 45.0% |
| ACCATACTGTACATCGGTAG+AGG | + | chr2_1:63708219-63708238 | Msa0217130:intron | 45.0% | |
| TCCTCTACCGATGTACAGTA+TGG | - | chr2_1:63708223-63708242 | None:intergenic | 45.0% | |
| ! | TGAAATTGATGACCACCCCA+TGG | + | chr2_1:63708570-63708589 | Msa0217130:CDS | 45.0% |
| TGTCATCAATTTCCATGGGG+TGG | - | chr2_1:63708585-63708604 | None:intergenic | 45.0% | |
| GTAAAGAAAGCAGCTGCAGA+AGG | + | chr2_1:63708769-63708788 | Msa0217130:CDS | 45.0% | |
| ! | GTTCCATTGGTGGCTAATGA+TGG | + | chr2_1:63709018-63709037 | Msa0217130:CDS | 45.0% |
| GTTCCATCATTAGCCACCAA+TGG | - | chr2_1:63709024-63709043 | None:intergenic | 45.0% | |
| AACAGCAACATTGGCACCAT+AGG | - | chr2_1:63709205-63709224 | None:intergenic | 45.0% | |
| !! | TGGTGCCAATGTTGCTGTTT+AGG | + | chr2_1:63709206-63709225 | Msa0217130:CDS | 45.0% |
| !!! | TTTTATATTTTAAATGTATT+AGG | - | chr2_1:63708017-63708036 | None:intergenic | 5.0% |
| !!! | ATTTAAAATATAAAAAAGTT+GGG | + | chr2_1:63708022-63708041 | Msa0217130:intron | 5.0% |
| !! | AAAATAAAAATTATACAATA+AGG | - | chr2_1:63709424-63709443 | None:intergenic | 5.0% |
| ! | ACATATGTTGAGGGTGTGGG+GGG | + | chr2_1:63707220-63707239 | Msa0217130:intron | 50.0% |
| CTTCTTCAGGCAGTGATGCA+TGG | - | chr2_1:63707479-63707498 | None:intergenic | 50.0% | |
| !! | GAAGTGGGAATGGGAGTGTT+GGG | - | chr2_1:63707522-63707541 | None:intergenic | 50.0% |
| ! | AGAAGTGGGAATGGGAGTGT+TGG | - | chr2_1:63707523-63707542 | None:intergenic | 50.0% |
| !! | CTTCTAAAGCCTGGACCTCA+AGG | + | chr2_1:63707552-63707571 | Msa0217130:CDS | 50.0% |
| AAAATTCCTGGCTCCACCAC+TGG | + | chr2_1:63708113-63708132 | Msa0217130:intron | 50.0% | |
| CGTCCCTTTGCACAACCTTA+TGG | + | chr2_1:63708679-63708698 | Msa0217130:CDS | 50.0% | |
| TCTCCATCATGGACAACCCA+TGG | + | chr2_1:63709234-63709253 | Msa0217130:three_prime_UTR | 50.0% | |
| CTCCATCATGGACAACCCAT+GGG | + | chr2_1:63709235-63709254 | Msa0217130:three_prime_UTR | 50.0% | |
| ! | ATCCCATGGGTTGTCCATGA+TGG | - | chr2_1:63709240-63709259 | None:intergenic | 50.0% |
| GATGTGCAGCTTGCACTTGC+AGG | + | chr2_1:63707447-63707466 | Msa0217130:intron | 55.0% | |
| TGTCAACCTCTGCTGCAGCC+AGG | + | chr2_1:63707919-63707938 | Msa0217130:intron | 60.0% | |
| GTCAACCTCTGCTGCAGCCA+GGG | + | chr2_1:63707920-63707939 | Msa0217130:intron | 60.0% | |
| TCAACCTCTGCTGCAGCCAG+GGG | + | chr2_1:63707921-63707940 | Msa0217130:intron | 60.0% | |
| ATTGAGCCCAGACGAGTGCC+CGG | - | chr2_1:63707968-63707987 | None:intergenic | 60.0% | |
| ! | TGTTGAGGGTGTGGGGGGTG+TGG | + | chr2_1:63707225-63707244 | Msa0217130:intron | 65.0% |
| TTGAGCCCAGACGAGTGCCC+GGG | - | chr2_1:63707967-63707986 | None:intergenic | 65.0% | |
| CCTACAGCTGCAGCCAGTGG+TGG | - | chr2_1:63708129-63708148 | None:intergenic | 65.0% | |
| ! | CCACCACTGGCTGCAGCTGT+AGG | + | chr2_1:63708126-63708145 | Msa0217130:intron | 65.0% |
| GGTCCTACAGCTGCAGCCAG+TGG | - | chr2_1:63708132-63708151 | None:intergenic | 65.0% | |
| TTCGCCCCTGGCTGCAGCAG+AGG | - | chr2_1:63707928-63707947 | None:intergenic | 70.0% | |
| TCTGCTGCAGCCAGGGGCGA+AGG | + | chr2_1:63707927-63707946 | Msa0217130:intron | 70.0% | |
| ! | CTGCAGCCAGTGGTGGAGCC+AGG | - | chr2_1:63708122-63708141 | None:intergenic | 70.0% |
| !! | CCAGGGGCGAAGGCACCACC+CGG | + | chr2_1:63707937-63707956 | Msa0217130:intron | 75.0% |
| ! | AAGGCACCACCCGGCGAGCC+CGG | + | chr2_1:63707946-63707965 | Msa0217130:intron | 75.0% |
| AGACGAGTGCCCGGGCTCGC+CGG | - | chr2_1:63707959-63707978 | None:intergenic | 75.0% | |
| GCGAGCCCGGGCACTCGTCT+GGG | + | chr2_1:63707959-63707978 | Msa0217130:intron | 75.0% | |
| ! | CCGGGTGGTGCCTTCGCCCC+TGG | - | chr2_1:63707940-63707959 | None:intergenic | 80.0% |
| ! | AGGCACCACCCGGCGAGCCC+GGG | + | chr2_1:63707947-63707966 | Msa0217130:intron | 80.0% |
| ! | GACGAGTGCCCGGGCTCGCC+GGG | - | chr2_1:63707958-63707977 | None:intergenic | 80.0% |
| ! | GGCGAGCCCGGGCACTCGTC+TGG | + | chr2_1:63707958-63707977 | Msa0217130:intron | 80.0% |
| ! | GAGTGCCCGGGCTCGCCGGG+TGG | - | chr2_1:63707955-63707974 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 63706981 | 63709623 | 63706981 | ID=Msa0217130;Name=Msa0217130 |
| chr2_1 | mRNA | 63706981 | 63709623 | 63706981 | ID=Msa0217130-mRNA-1;Parent=Msa0217130;Name=Msa0217130-mRNA-1;_AED=0.03;_eAED=0.03;_QI=43|1|1|1|1|1|3|396|273 |
| chr2_1 | exon | 63706981 | 63707065 | 63706981 | ID=Msa0217130-mRNA-1:exon:17679;Parent=Msa0217130-mRNA-1 |
| chr2_1 | exon | 63707456 | 63707573 | 63707456 | ID=Msa0217130-mRNA-1:exon:17680;Parent=Msa0217130-mRNA-1 |
| chr2_1 | exon | 63708566 | 63709623 | 63708566 | ID=Msa0217130-mRNA-1:exon:17681;Parent=Msa0217130-mRNA-1 |
| chr2_1 | five_prime_UTR | 63706981 | 63707023 | 63706981 | ID=Msa0217130-mRNA-1:five_prime_utr;Parent=Msa0217130-mRNA-1 |
| chr2_1 | CDS | 63707024 | 63707065 | 63707024 | ID=Msa0217130-mRNA-1:cds;Parent=Msa0217130-mRNA-1 |
| chr2_1 | CDS | 63707456 | 63707573 | 63707456 | ID=Msa0217130-mRNA-1:cds;Parent=Msa0217130-mRNA-1 |
| chr2_1 | CDS | 63708566 | 63709227 | 63708566 | ID=Msa0217130-mRNA-1:cds;Parent=Msa0217130-mRNA-1 |
| chr2_1 | three_prime_UTR | 63709228 | 63709623 | 63709228 | ID=Msa0217130-mRNA-1:three_prime_utr;Parent=Msa0217130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
