Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385330 | XP_003596535.2 | 94.872 | 273 | 14 | 0 | 1 | 273 | 1 | 273 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385330 | sp|P21747|EA92_VICFA | 43.382 | 272 | 139 | 7 | 1 | 265 | 1 | 264 | 8.15e-69 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385330 | G7ITL0 | 94.872 | 273 | 14 | 0 | 1 | 273 | 1 | 273 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1385290 | Msa1385330 | 0.998801 | 3.853068e-277 | -8.615850e-47 |
| Msa0217110 | Msa1385330 | 0.848677 | 5.261714e-60 | -8.615850e-47 |
| Msa0217130 | Msa1385330 | 0.986320 | 2.143775e-166 | -8.615850e-47 |
| Msa0217160 | Msa1385330 | 0.984243 | 5.364327e-160 | -8.615850e-47 |
| Msa0256730 | Msa1385330 | 0.958385 | 2.684434e-116 | -8.615850e-47 |
| Msa0296220 | Msa1385330 | 0.942465 | 6.849393e-102 | -8.615850e-47 |
| Msa0296290 | Msa1385330 | 0.806904 | 6.558837e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385330 | MtrunA17_Chr2g0318901 | 94.872 | 273 | 14 | 0 | 1 | 273 | 1 | 273 | 0.0 | 548 |
| Msa1385330 | MtrunA17_Chr2g0318871 | 83.516 | 273 | 45 | 0 | 1 | 273 | 1 | 273 | 2.40e-176 | 486 |
| Msa1385330 | MtrunA17_Chr2g0318931 | 63.941 | 269 | 88 | 5 | 1 | 261 | 5 | 272 | 1.11e-123 | 353 |
| Msa1385330 | MtrunA17_Chr8g0355861 | 45.149 | 268 | 132 | 7 | 1 | 260 | 1 | 261 | 4.08e-78 | 238 |
| Msa1385330 | MtrunA17_Chr8g0355321 | 37.540 | 309 | 129 | 6 | 10 | 260 | 1 | 303 | 1.49e-73 | 227 |
| Msa1385330 | MtrunA17_Chr1g0168781 | 42.435 | 271 | 142 | 6 | 1 | 264 | 1 | 264 | 3.16e-72 | 222 |
| Msa1385330 | MtrunA17_Chr8g0355871 | 45.918 | 196 | 97 | 3 | 71 | 259 | 29 | 222 | 1.20e-60 | 192 |
| Msa1385330 | MtrunA17_Chr8g0355311 | 49.412 | 170 | 79 | 2 | 96 | 265 | 34 | 196 | 7.79e-58 | 183 |
| Msa1385330 | MtrunA17_Chr8g0355841 | 53.165 | 158 | 73 | 1 | 111 | 268 | 362 | 518 | 1.33e-57 | 192 |
| Msa1385330 | MtrunA17_Chr8g0355331 | 45.882 | 170 | 85 | 2 | 97 | 266 | 266 | 428 | 1.56e-53 | 179 |
| Msa1385330 | MtrunA17_Chr8g0355831 | 55.333 | 150 | 66 | 1 | 111 | 260 | 204 | 352 | 1.16e-51 | 172 |
| Msa1385330 | MtrunA17_Chr3g0139431 | 31.889 | 323 | 145 | 12 | 6 | 259 | 5 | 321 | 1.60e-44 | 153 |
| Msa1385330 | MtrunA17_Chr1g0147261 | 33.663 | 303 | 149 | 12 | 1 | 257 | 1 | 297 | 2.10e-44 | 152 |
| Msa1385330 | MtrunA17_Chr1g0147311 | 28.746 | 327 | 158 | 9 | 5 | 258 | 30 | 354 | 1.89e-39 | 140 |
| Msa1385330 | MtrunA17_Chr1g0147331 | 29.538 | 325 | 153 | 11 | 5 | 258 | 4 | 323 | 3.10e-38 | 136 |
| Msa1385330 | MtrunA17_Chr1g0147241 | 30.671 | 313 | 158 | 12 | 1 | 257 | 1 | 310 | 1.02e-37 | 135 |
| Msa1385330 | MtrunA17_Chr1g0146631 | 28.923 | 325 | 155 | 11 | 5 | 258 | 4 | 323 | 7.25e-37 | 133 |
| Msa1385330 | MtrunA17_Chr1g0147291 | 32.456 | 228 | 126 | 9 | 57 | 258 | 40 | 265 | 5.96e-31 | 116 |
| Msa1385330 | MtrunA17_Chr1g0147301 | 32.618 | 233 | 123 | 10 | 57 | 258 | 54 | 283 | 7.58e-31 | 116 |
| Msa1385330 | MtrunA17_Chr1g0147271 | 34.579 | 214 | 111 | 7 | 73 | 258 | 171 | 383 | 3.17e-30 | 116 |
| Msa1385330 | MtrunA17_Chr1g0147321 | 32.456 | 228 | 126 | 9 | 56 | 257 | 10 | 235 | 3.78e-30 | 114 |
| Msa1385330 | MtrunA17_Chr1g0147251 | 31.278 | 227 | 123 | 6 | 58 | 257 | 20 | 240 | 5.99e-30 | 112 |
| Msa1385330 | MtrunA17_Chr3g0144421 | 28.879 | 232 | 130 | 10 | 59 | 259 | 75 | 302 | 3.25e-19 | 85.5 |
| Msa1385330 | MtrunA17_Chr4g0034821 | 29.778 | 225 | 116 | 11 | 73 | 261 | 75 | 293 | 5.11e-18 | 82.0 |
| Msa1385330 | MtrunA17_Chr3g0138231 | 31.250 | 144 | 89 | 4 | 128 | 261 | 125 | 268 | 2.18e-15 | 74.3 |
| Msa1385330 | MtrunA17_Chr4g0034731 | 32.867 | 143 | 84 | 5 | 129 | 259 | 290 | 432 | 1.50e-14 | 73.2 |
| Msa1385330 | MtrunA17_Chr3g0144451 | 32.639 | 144 | 87 | 5 | 128 | 261 | 134 | 277 | 1.84e-14 | 71.6 |
| Msa1385330 | MtrunA17_Chr4g0034721 | 34.266 | 143 | 82 | 6 | 129 | 259 | 434 | 576 | 2.76e-14 | 72.4 |
| Msa1385330 | MtrunA17_Chr4g0076231 | 26.897 | 145 | 95 | 5 | 123 | 257 | 13 | 156 | 7.69e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1385330 | AT5G25610.1 | 33.036 | 224 | 121 | 8 | 63 | 257 | 166 | 389 | 4.08e-29 | 114 |
| Msa1385330 | AT1G49320.1 | 35.135 | 148 | 81 | 5 | 126 | 258 | 131 | 278 | 1.23e-16 | 78.2 |
Find 69 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCATTTCCTTGGAAATA+AGG | 0.195752 | tig0020728:+93037 | Msa1385330:CDS |
| GCAAAGATTGTGCCTCTTTA+GGG | 0.226798 | tig0020728:-93246 | None:intergenic |
| AGCAAAGATTGTGCCTCTTT+AGG | 0.246185 | tig0020728:-93247 | None:intergenic |
| GACAATAAAATACAACCTTT+TGG | 0.266567 | tig0020728:-92860 | None:intergenic |
| ATTGAAATCAGAAAATTTAG+AGG | 0.297761 | tig0020728:+93478 | Msa1385330:three_prime_UTR |
| CGTCCCTTTGCACAACCTTA+TGG | 0.298036 | tig0020728:+92573 | Msa1385330:CDS |
| CACTGCCTGAAGAAGAATAT+TGG | 0.300262 | tig0020728:+91378 | Msa1385330:CDS |
| TGGTGCCAATGTTGCTGTTT+AGG | 0.323097 | tig0020728:+93100 | Msa1385330:CDS |
| GCTTCCCAATATTCTTCTTC+AGG | 0.355894 | tig0020728:-91383 | None:intergenic |
| AAGAATATTGGGAAGCTGTT+TGG | 0.356329 | tig0020728:+91390 | Msa1385330:CDS |
| TCCCTTGTTGATTTCAAGAA+TGG | 0.360833 | tig0020728:+90900 | Msa1385330:exon |
| GCATTGTCCAAACCTAAATT+AGG | 0.363667 | tig0020728:-93074 | None:intergenic |
| AAATCCTTAGGAACATTAAT+CGG | 0.372556 | tig0020728:+92705 | Msa1385330:CDS |
| GTTTGTCATGCTGATACTTC+AGG | 0.375794 | tig0020728:+92957 | Msa1385330:CDS |
| GGATTTGCAATTTCTAAGCT+TGG | 0.386794 | tig0020728:+92726 | Msa1385330:CDS |
| TATGAACATGAACTTTATCC+TGG | 0.401999 | tig0020728:+92522 | Msa1385330:CDS |
| CCCTTGTTGATTTCAAGAAT+GGG | 0.405370 | tig0020728:+90901 | Msa1385330:exon |
| AAACCTGTTTGTCATTTCCT+TGG | 0.406653 | tig0020728:+93029 | Msa1385330:CDS |
| GATGTGCAGCTTGCACTTGC+AGG | 0.411503 | tig0020728:+91341 | Msa1385330:intron |
| ACTGCCTGAAGAAGAATATT+GGG | 0.412787 | tig0020728:+91379 | Msa1385330:CDS |
| TCTAGCTTAATTAGCTAGAA+AGG | 0.415491 | tig0020728:-93198 | None:intergenic |
| ATAGAGTCAGTGCAAAATCT+TGG | 0.422753 | tig0020728:+92804 | Msa1385330:CDS |
| ATGGGTACCTAATTTAGGTT+TGG | 0.424424 | tig0020728:+93067 | Msa1385330:CDS |
| TTGTGTGTCATCAATTTCCA+TGG | 0.427694 | tig0020728:-92481 | None:intergenic |
| AGAAAGCAGTTATGTGTCAT+AGG | 0.437124 | tig0020728:+92829 | Msa1385330:CDS |
| TTGTTCATGCTTATCTATGA+AGG | 0.440092 | tig0020728:-92775 | None:intergenic |
| AAATAACAACCTTGAGGTCC+AGG | 0.452077 | tig0020728:-91455 | None:intergenic |
| TAGAAGTTCTCGAAGAGAAG+TGG | 0.456535 | tig0020728:-91429 | None:intergenic |
| TTTCCAAGGAAATGACAAAC+AGG | 0.462441 | tig0020728:-93032 | None:intergenic |
| CTAGCTAATTAAGCTAGAGT+TGG | 0.466469 | tig0020728:+93203 | Msa1385330:three_prime_UTR |
| CATGTTATAATATGATGAAA+TGG | 0.470529 | tig0020728:+93286 | Msa1385330:three_prime_UTR |
| AACCTTATGGTGTTTATACA+TGG | 0.471062 | tig0020728:+92586 | Msa1385330:CDS |
| CTTCTTCAGGCAGTGATGCA+TGG | 0.473820 | tig0020728:-91370 | None:intergenic |
| GAAGTGGGAATGGGAGTGTT+GGG | 0.474967 | tig0020728:-91413 | None:intergenic |
| ACACCATAAGGTTGTGCAAA+GGG | 0.481077 | tig0020728:-92576 | None:intergenic |
| TTAGGTTTGGACAATGCCTA+TGG | 0.494021 | tig0020728:+93080 | Msa1385330:CDS |
| TTCTCGAAGAGAAGTGGGAA+TGG | 0.495855 | tig0020728:-91423 | None:intergenic |
| CTTCGAGAACTTCTAAAGCC+TGG | 0.497324 | tig0020728:+91437 | Msa1385330:CDS |
| ATAAAATAGCCTTATTTCCA+AGG | 0.498608 | tig0020728:-93046 | None:intergenic |
| ATCCCATGGGTTGTCCATGA+TGG | 0.500990 | tig0020728:-93131 | None:intergenic |
| ATCCATGTATAAACACCATA+AGG | 0.501910 | tig0020728:-92588 | None:intergenic |
| AGAAGTGGGAATGGGAGTGT+TGG | 0.505103 | tig0020728:-91414 | None:intergenic |
| GTTCCATCATTAGCCACCAA+TGG | 0.510862 | tig0020728:-92915 | None:intergenic |
| TCATAGGTTGAATTTCCAAA+AGG | 0.512621 | tig0020728:+92845 | Msa1385330:CDS |
| CAGATTATGAAAGCTGATCC+TGG | 0.522799 | tig0020728:+93002 | Msa1385330:CDS |
| ATTTATGTTACACAATCCCA+TGG | 0.523591 | tig0020728:-93145 | None:intergenic |
| AAATCCGATTAATGTTCCTA+AGG | 0.524830 | tig0020728:-92709 | None:intergenic |
| GTTCCATTGGTGGCTAATGA+TGG | 0.535070 | tig0020728:+92912 | Msa1385330:CDS |
| TGTGTGTCATCAATTTCCAT+GGG | 0.537514 | tig0020728:-92480 | None:intergenic |
| TCTCGAAGAGAAGTGGGAAT+GGG | 0.548515 | tig0020728:-91422 | None:intergenic |
| CTTCTAAAGCCTGGACCTCA+AGG | 0.560362 | tig0020728:+91446 | Msa1385330:CDS |
| AACAGCAACATTGGCACCAT+AGG | 0.567015 | tig0020728:-93096 | None:intergenic |
| AGAAGTTCTCGAAGAGAAGT+GGG | 0.572137 | tig0020728:-91428 | None:intergenic |
| TCTCCATCATGGACAACCCA+TGG | 0.575120 | tig0020728:+93128 | Msa1385330:three_prime_UTR |
| GTAAAGAAAGCAGCTGCAGA+AGG | 0.576977 | tig0020728:+92663 | Msa1385330:CDS |
| GTACTCCTAAACAGCAACAT+TGG | 0.581094 | tig0020728:-93105 | None:intergenic |
| AGAAGGATACACATTTAATG+AGG | 0.587845 | tig0020728:+92635 | Msa1385330:CDS |
| TTTAGGAGTACTCTCCATCA+TGG | 0.588077 | tig0020728:+93117 | Msa1385330:exon |
| CTCCATCATGGACAACCCAT+GGG | 0.596865 | tig0020728:+93129 | Msa1385330:three_prime_UTR |
| TGTCATCAATTTCCATGGGG+TGG | 0.605445 | tig0020728:-92476 | None:intergenic |
| GAACTGAAATGAAAACGAGA+AGG | 0.613747 | tig0020728:-90933 | None:intergenic |
| TTTATGTTACACAATCCCAT+GGG | 0.616443 | tig0020728:-93144 | None:intergenic |
| TGACAAACAGGTTTACTACC+AGG | 0.616609 | tig0020728:-93020 | None:intergenic |
| CCCATTCTTGAAATCAACAA+GGG | 0.626455 | tig0020728:-90901 | None:intergenic |
| TCCCATTCTTGAAATCAACA+AGG | 0.627989 | tig0020728:-90902 | None:intergenic |
| AAAATATCATCGATAAGACT+CGG | 0.638308 | tig0020728:-93373 | None:intergenic |
| AACACCATAAGGTTGTGCAA+AGG | 0.645055 | tig0020728:-92577 | None:intergenic |
| TGAAATTGATGACCACCCCA+TGG | 0.663021 | tig0020728:+92464 | Msa1385330:CDS |
| GTGTGTCATCAATTTCCATG+GGG | 0.716189 | tig0020728:-92479 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCACAATATTAATTAATAT+AGG | - | tig0020728:91557-91576 | None:intergenic | 10.0% |
| !!! | TAATCCTTTATTAATTTTAT+TGG | + | tig0020728:91662-91681 | Msa1385330:intron | 10.0% |
| !!! | CATTTAAAATATAAAAAAGT+TGG | + | tig0020728:91915-91934 | Msa1385330:intron | 10.0% |
| !! | ACATTATTAATTTATTTGTT+AGG | - | tig0020728:92156-92175 | None:intergenic | 10.0% |
| !! | TGATCCAATAAAATTAATAA+AGG | - | tig0020728:91669-91688 | None:intergenic | 15.0% |
| !! | ATCGATATTTACTTTATATT+TGG | + | tig0020728:91880-91899 | Msa1385330:intron | 15.0% |
| !!! | TATTTTAAATGTATTAGGTT+GGG | - | tig0020728:91906-91925 | None:intergenic | 15.0% |
| !!! | ATATTTTAAATGTATTAGGT+TGG | - | tig0020728:91907-91926 | None:intergenic | 15.0% |
| !! | TATTTGTCATATAAATTGAA+TGG | - | tig0020728:92047-92066 | None:intergenic | 15.0% |
| !! | TTTATTAGTTAAAATTCAGA+TGG | + | tig0020728:92284-92303 | Msa1385330:intron | 15.0% |
| !! | TTATTAGTTAAAATTCAGAT+GGG | + | tig0020728:92285-92304 | Msa1385330:intron | 15.0% |
| !!! | TAACACATATTCTTTTTTAT+TGG | - | tig0020728:92364-92383 | None:intergenic | 15.0% |
| !! | AAAGAATATGTGTTAAATTA+TGG | + | tig0020728:92369-92388 | Msa1385330:intron | 15.0% |
| !!! | TTTCGTAAGTAAATATTTTT+AGG | + | tig0020728:93335-93354 | Msa1385330:three_prime_UTR | 15.0% |
| !!! | TTCGTAAGTAAATATTTTTA+GGG | + | tig0020728:93336-93355 | Msa1385330:three_prime_UTR | 15.0% |
| !! | AATAACATGTCATAAAAAAA+AGG | + | tig0020728:93407-93426 | Msa1385330:three_prime_UTR | 15.0% |
| !! | TTAAACAACAACCTAAAATA+TGG | + | tig0020728:91055-91074 | Msa1385330:intron | 20.0% |
| !!! | TACTTTAATTGCCATATTTT+AGG | - | tig0020728:91069-91088 | None:intergenic | 20.0% |
| !! | ATTATTACTTACATATGTTG+AGG | + | tig0020728:91105-91124 | Msa1385330:intron | 20.0% |
| !! | TTATTACTTACATATGTTGA+GGG | + | tig0020728:91106-91125 | Msa1385330:intron | 20.0% |
| !! | AAAATTAAATAACAACCTTG+AGG | - | tig0020728:91464-91483 | None:intergenic | 20.0% |
| !!! | TCAGAAAAGGTAAATTTTAT+GGG | + | tig0020728:91604-91623 | Msa1385330:intron | 20.0% |
| !! | TTATATGACAAATAATTCCA+AGG | + | tig0020728:92053-92072 | Msa1385330:intron | 20.0% |
| !! | TATATGACAAATAATTCCAA+GGG | + | tig0020728:92054-92073 | Msa1385330:intron | 20.0% |
| !!! | AATTTATTTGTTAGGATGAA+AGG | - | tig0020728:92148-92167 | None:intergenic | 20.0% |
| !! | TCTCTCAAGTTATATATTAT+TGG | - | tig0020728:92182-92201 | None:intergenic | 20.0% |
| !!! | TATTTTAAACCCATGTATTA+TGG | + | tig0020728:92432-92451 | Msa1385330:intron | 20.0% |
| !!! | GTTCATAGAAAAATGTTTTT+GGG | - | tig0020728:92509-92528 | None:intergenic | 20.0% |
| !!! | TGTTCATAGAAAAATGTTTT+TGG | - | tig0020728:92510-92529 | None:intergenic | 20.0% |
| !! | ATTAAAGACATTGAAAAAGA+AGG | + | tig0020728:92618-92637 | Msa1385330:CDS | 20.0% |
| !!! | TTTTATTGTCATGAAATTCA+TGG | + | tig0020728:92873-92892 | Msa1385330:CDS | 20.0% |
| !! | CATGTTATAATATGATGAAA+TGG | + | tig0020728:93286-93305 | Msa1385330:three_prime_UTR | 20.0% |
| !!! | TTTTTAGGGTTAAATATGTT+TGG | + | tig0020728:93350-93369 | Msa1385330:three_prime_UTR | 20.0% |
| !! | ATTGAAATCAGAAAATTTAG+AGG | + | tig0020728:93478-93497 | Msa1385330:three_prime_UTR | 20.0% |
| ! | TAAGTTTATAGTACATCAGT+TGG | - | tig0020728:91038-91057 | None:intergenic | 25.0% |
| ! | GTAAGAAATAAACTCAGAAA+AGG | + | tig0020728:91591-91610 | Msa1385330:intron | 25.0% |
| !! | CTCAGAAAAGGTAAATTTTA+TGG | + | tig0020728:91603-91622 | Msa1385330:intron | 25.0% |
| ! | AGAGATGAAAAACTAATAAG+GGG | - | tig0020728:91720-91739 | None:intergenic | 25.0% |
| ! | CAGAGATGAAAAACTAATAA+GGG | - | tig0020728:91721-91740 | None:intergenic | 25.0% |
| ! | TCAGAGATGAAAAACTAATA+AGG | - | tig0020728:91722-91741 | None:intergenic | 25.0% |
| ! | ACAAAATTAATACTCTCCTT+CGG | - | tig0020728:91772-91791 | None:intergenic | 25.0% |
| !!! | AAGGAGAGTATTAATTTTGT+AGG | + | tig0020728:91772-91791 | Msa1385330:intron | 25.0% |
| ! | TCATGTGAGTTTCATAAATT+TGG | - | tig0020728:92315-92334 | None:intergenic | 25.0% |
| ! | TTTATGAAACTCACATGATT+TGG | + | tig0020728:92317-92336 | Msa1385330:intron | 25.0% |
| !! | AAATTTTGTGCAAAATCCTT+AGG | + | tig0020728:92693-92712 | Msa1385330:CDS | 25.0% |
| ! | AAATCCTTAGGAACATTAAT+CGG | + | tig0020728:92705-92724 | Msa1385330:CDS | 25.0% |
| !! | GACAATAAAATACAACCTTT+TGG | - | tig0020728:92863-92882 | None:intergenic | 25.0% |
| !!! | ATAAAATAGCCTTATTTCCA+AGG | - | tig0020728:93049-93068 | None:intergenic | 25.0% |
| !!! | TTGGAAATAAGGCTATTTTA+TGG | + | tig0020728:93048-93067 | Msa1385330:CDS | 25.0% |
| !!! | TGGAAATAAGGCTATTTTAT+GGG | + | tig0020728:93049-93068 | Msa1385330:CDS | 25.0% |
| !! | ATTTTATGGGTACCTAATTT+AGG | + | tig0020728:93062-93081 | Msa1385330:CDS | 25.0% |
| ! | AAAATATCATCGATAAGACT+CGG | - | tig0020728:93376-93395 | None:intergenic | 25.0% |
| !! | GTCTTATCGATGATATTTTT+AGG | + | tig0020728:93377-93396 | Msa1385330:three_prime_UTR | 25.0% |
| AAGAGTTCTTAAGTGTTTAG+AGG | - | tig0020728:91003-91022 | None:intergenic | 30.0% | |
| TCTAAACACTTAAGAACTCT+TGG | + | tig0020728:91002-91021 | Msa1385330:intron | 30.0% | |
| AGGTTGACAAATTTGAATGT+TGG | - | tig0020728:91802-91821 | None:intergenic | 30.0% | |
| ! | TGACTCTATAATTTTTGCCT+AGG | + | tig0020728:91978-91997 | Msa1385330:intron | 30.0% |
| TAAATTTAGAAAGAGACCCT+TGG | - | tig0020728:92073-92092 | None:intergenic | 30.0% | |
| ! | GAGAGATGTTATGATTTTTC+TGG | + | tig0020728:92198-92217 | Msa1385330:intron | 30.0% |
| TGTGAGTTTCATAAATTTGG+AGG | - | tig0020728:92312-92331 | None:intergenic | 30.0% | |
| TATGAACATGAACTTTATCC+TGG | + | tig0020728:92522-92541 | Msa1385330:CDS | 30.0% | |
| AACCTTATGGTGTTTATACA+TGG | + | tig0020728:92586-92605 | Msa1385330:CDS | 30.0% | |
| ATCCATGTATAAACACCATA+AGG | - | tig0020728:92591-92610 | None:intergenic | 30.0% | |
| AGAAGGATACACATTTAATG+AGG | + | tig0020728:92635-92654 | Msa1385330:CDS | 30.0% | |
| AAATCCGATTAATGTTCCTA+AGG | - | tig0020728:92712-92731 | None:intergenic | 30.0% | |
| TTGTTCATGCTTATCTATGA+AGG | - | tig0020728:92778-92797 | None:intergenic | 30.0% | |
| ! | TCATAGGTTGAATTTCCAAA+AGG | + | tig0020728:92845-92864 | Msa1385330:CDS | 30.0% |
| ! | TTGTCATTTCCTTGGAAATA+AGG | + | tig0020728:93037-93056 | Msa1385330:CDS | 30.0% |
| TTTATGTTACACAATCCCAT+GGG | - | tig0020728:93147-93166 | None:intergenic | 30.0% | |
| ATTTATGTTACACAATCCCA+TGG | - | tig0020728:93148-93167 | None:intergenic | 30.0% | |
| ! | TCTAGCTTAATTAGCTAGAA+AGG | - | tig0020728:93201-93220 | None:intergenic | 30.0% |
| ! | TACTTTTATGTACCCTAAAG+AGG | + | tig0020728:93234-93253 | Msa1385330:three_prime_UTR | 30.0% |
| !! | TCCCTTGTTGATTTCAAGAA+TGG | + | tig0020728:90900-90919 | Msa1385330:exon | 35.0% |
| CCCATTCTTGAAATCAACAA+GGG | - | tig0020728:90904-90923 | None:intergenic | 35.0% | |
| !! | CCCTTGTTGATTTCAAGAAT+GGG | + | tig0020728:90901-90920 | Msa1385330:exon | 35.0% |
| TCCCATTCTTGAAATCAACA+AGG | - | tig0020728:90905-90924 | None:intergenic | 35.0% | |
| GAACTGAAATGAAAACGAGA+AGG | - | tig0020728:90936-90955 | None:intergenic | 35.0% | |
| !!! | GAAATGAAAGGTTTTAGAGC+AGG | - | tig0020728:90974-90993 | None:intergenic | 35.0% |
| !! | TAGAGGATGATGGAAATGAA+AGG | - | tig0020728:90986-91005 | None:intergenic | 35.0% |
| CTTAAGTGTTTAGAGGATGA+TGG | - | tig0020728:90996-91015 | None:intergenic | 35.0% | |
| ACTGCCTGAAGAAGAATATT+GGG | + | tig0020728:91379-91398 | Msa1385330:CDS | 35.0% | |
| AAGAATATTGGGAAGCTGTT+TGG | + | tig0020728:91390-91409 | Msa1385330:CDS | 35.0% | |
| !! | TCTCTGAAGCTGTAATATAG+TGG | + | tig0020728:91735-91754 | Msa1385330:intron | 35.0% |
| !! | TTGTTAGGATGAAAGGTGTT+TGG | - | tig0020728:92141-92160 | None:intergenic | 35.0% |
| !! | TATGGTGTCACAGTCAAAAT+TGG | + | tig0020728:92387-92406 | Msa1385330:intron | 35.0% |
| TGTGTGTCATCAATTTCCAT+GGG | - | tig0020728:92483-92502 | None:intergenic | 35.0% | |
| TTGTGTGTCATCAATTTCCA+TGG | - | tig0020728:92484-92503 | None:intergenic | 35.0% | |
| GGATTTGCAATTTCTAAGCT+TGG | + | tig0020728:92726-92745 | Msa1385330:CDS | 35.0% | |
| ATAGAGTCAGTGCAAAATCT+TGG | + | tig0020728:92804-92823 | Msa1385330:CDS | 35.0% | |
| AGAAAGCAGTTATGTGTCAT+AGG | + | tig0020728:92829-92848 | Msa1385330:CDS | 35.0% | |
| ! | TCATGGAACAACAGCTTTTA+TGG | + | tig0020728:92890-92909 | Msa1385330:CDS | 35.0% |
| ! | AACAGCTTTTATGGTTCCAT+TGG | + | tig0020728:92899-92918 | Msa1385330:CDS | 35.0% |
| ! | AAACCTGTTTGTCATTTCCT+TGG | + | tig0020728:93029-93048 | Msa1385330:CDS | 35.0% |
| TTTCCAAGGAAATGACAAAC+AGG | - | tig0020728:93035-93054 | None:intergenic | 35.0% | |
| ! | ATGGGTACCTAATTTAGGTT+TGG | + | tig0020728:93067-93086 | Msa1385330:CDS | 35.0% |
| GCATTGTCCAAACCTAAATT+AGG | - | tig0020728:93077-93096 | None:intergenic | 35.0% | |
| CTAGCTAATTAAGCTAGAGT+TGG | + | tig0020728:93203-93222 | Msa1385330:three_prime_UTR | 35.0% | |
| ACTTACATATGTTGAGGGTG+TGG | + | tig0020728:91111-91130 | Msa1385330:intron | 40.0% | |
| CACTGCCTGAAGAAGAATAT+TGG | + | tig0020728:91378-91397 | Msa1385330:CDS | 40.0% | |
| GCTTCCCAATATTCTTCTTC+AGG | - | tig0020728:91386-91405 | None:intergenic | 40.0% | |
| AGAAGTTCTCGAAGAGAAGT+GGG | - | tig0020728:91431-91450 | None:intergenic | 40.0% | |
| TAGAAGTTCTCGAAGAGAAG+TGG | - | tig0020728:91432-91451 | None:intergenic | 40.0% | |
| AAATAACAACCTTGAGGTCC+AGG | - | tig0020728:91458-91477 | None:intergenic | 40.0% | |
| AGTGGTATTGTTGAATCCGA+AGG | + | tig0020728:91753-91772 | Msa1385330:intron | 40.0% | |
| ! | CCAGGAATTTTGTAAAGCCT+AGG | - | tig0020728:91998-92017 | None:intergenic | 40.0% |
| CCTAGGCTTTACAAAATTCC+TGG | + | tig0020728:91995-92014 | Msa1385330:intron | 40.0% | |
| TACAGCACCATACTGTACAT+CGG | + | tig0020728:92107-92126 | Msa1385330:intron | 40.0% | |
| AAACCCATGTATTATGGCAC+AGG | + | tig0020728:92438-92457 | Msa1385330:intron | 40.0% | |
| ACACCTGTGCCATAATACAT+GGG | - | tig0020728:92444-92463 | None:intergenic | 40.0% | |
| AACACCTGTGCCATAATACA+TGG | - | tig0020728:92445-92464 | None:intergenic | 40.0% | |
| GTGTGTCATCAATTTCCATG+GGG | - | tig0020728:92482-92501 | None:intergenic | 40.0% | |
| !! | TGCACTTTCATTGTTTTGCC+AGG | - | tig0020728:92543-92562 | None:intergenic | 40.0% |
| ACACCATAAGGTTGTGCAAA+GGG | - | tig0020728:92579-92598 | None:intergenic | 40.0% | |
| AACACCATAAGGTTGTGCAA+AGG | - | tig0020728:92580-92599 | None:intergenic | 40.0% | |
| ! | AGCTTTTATGGTTCCATTGG+TGG | + | tig0020728:92902-92921 | Msa1385330:CDS | 40.0% |
| GTTTGTCATGCTGATACTTC+AGG | + | tig0020728:92957-92976 | Msa1385330:CDS | 40.0% | |
| CAGATTATGAAAGCTGATCC+TGG | + | tig0020728:93002-93021 | Msa1385330:CDS | 40.0% | |
| TGACAAACAGGTTTACTACC+AGG | - | tig0020728:93023-93042 | None:intergenic | 40.0% | |
| TTAGGTTTGGACAATGCCTA+TGG | + | tig0020728:93080-93099 | Msa1385330:CDS | 40.0% | |
| GTACTCCTAAACAGCAACAT+TGG | - | tig0020728:93108-93127 | None:intergenic | 40.0% | |
| !! | TTTAGGAGTACTCTCCATCA+TGG | + | tig0020728:93117-93136 | Msa1385330:exon | 40.0% |
| GCAAAGATTGTGCCTCTTTA+GGG | - | tig0020728:93249-93268 | None:intergenic | 40.0% | |
| AGCAAAGATTGTGCCTCTTT+AGG | - | tig0020728:93250-93269 | None:intergenic | 40.0% | |
| TCTCGAAGAGAAGTGGGAAT+GGG | - | tig0020728:91425-91444 | None:intergenic | 45.0% | |
| TTCTCGAAGAGAAGTGGGAA+TGG | - | tig0020728:91426-91445 | None:intergenic | 45.0% | |
| !! | CTTCGAGAACTTCTAAAGCC+TGG | + | tig0020728:91437-91456 | Msa1385330:CDS | 45.0% |
| ACCATACTGTACATCGGTAG+AGG | + | tig0020728:92113-92132 | Msa1385330:intron | 45.0% | |
| TCCTCTACCGATGTACAGTA+TGG | - | tig0020728:92117-92136 | None:intergenic | 45.0% | |
| ! | TGAAATTGATGACCACCCCA+TGG | + | tig0020728:92464-92483 | Msa1385330:CDS | 45.0% |
| TGTCATCAATTTCCATGGGG+TGG | - | tig0020728:92479-92498 | None:intergenic | 45.0% | |
| GTAAAGAAAGCAGCTGCAGA+AGG | + | tig0020728:92663-92682 | Msa1385330:CDS | 45.0% | |
| ! | GTTCCATTGGTGGCTAATGA+TGG | + | tig0020728:92912-92931 | Msa1385330:CDS | 45.0% |
| GTTCCATCATTAGCCACCAA+TGG | - | tig0020728:92918-92937 | None:intergenic | 45.0% | |
| AACAGCAACATTGGCACCAT+AGG | - | tig0020728:93099-93118 | None:intergenic | 45.0% | |
| !! | TGGTGCCAATGTTGCTGTTT+AGG | + | tig0020728:93100-93119 | Msa1385330:CDS | 45.0% |
| !!! | TTTTATATTTTAAATGTATT+AGG | - | tig0020728:91911-91930 | None:intergenic | 5.0% |
| !!! | ATTTAAAATATAAAAAAGTT+GGG | + | tig0020728:91916-91935 | Msa1385330:intron | 5.0% |
| !! | AAAATAAAAATTATACAATA+AGG | - | tig0020728:93318-93337 | None:intergenic | 5.0% |
| CTTCTTCAGGCAGTGATGCA+TGG | - | tig0020728:91373-91392 | None:intergenic | 50.0% | |
| !! | GAAGTGGGAATGGGAGTGTT+GGG | - | tig0020728:91416-91435 | None:intergenic | 50.0% |
| ! | AGAAGTGGGAATGGGAGTGT+TGG | - | tig0020728:91417-91436 | None:intergenic | 50.0% |
| !! | CTTCTAAAGCCTGGACCTCA+AGG | + | tig0020728:91446-91465 | Msa1385330:CDS | 50.0% |
| AAAATTCCTGGCTCCACCAC+TGG | + | tig0020728:92007-92026 | Msa1385330:intron | 50.0% | |
| CGTCCCTTTGCACAACCTTA+TGG | + | tig0020728:92573-92592 | Msa1385330:CDS | 50.0% | |
| TCTCCATCATGGACAACCCA+TGG | + | tig0020728:93128-93147 | Msa1385330:three_prime_UTR | 50.0% | |
| CTCCATCATGGACAACCCAT+GGG | + | tig0020728:93129-93148 | Msa1385330:three_prime_UTR | 50.0% | |
| ! | ATCCCATGGGTTGTCCATGA+TGG | - | tig0020728:93134-93153 | None:intergenic | 50.0% |
| GATGTGCAGCTTGCACTTGC+AGG | + | tig0020728:91341-91360 | Msa1385330:intron | 55.0% | |
| TGTCAACCTCTGCTGCAGCC+AGG | + | tig0020728:91813-91832 | Msa1385330:intron | 60.0% | |
| GTCAACCTCTGCTGCAGCCA+GGG | + | tig0020728:91814-91833 | Msa1385330:intron | 60.0% | |
| TCAACCTCTGCTGCAGCCAG+GGG | + | tig0020728:91815-91834 | Msa1385330:intron | 60.0% | |
| ATTGAGCCCAGACGAGTGCC+CGG | - | tig0020728:91862-91881 | None:intergenic | 60.0% | |
| TTGAGCCCAGACGAGTGCCC+GGG | - | tig0020728:91861-91880 | None:intergenic | 65.0% | |
| CCTACAGCTGCAGCCAGTGG+TGG | - | tig0020728:92023-92042 | None:intergenic | 65.0% | |
| ! | CCACCACTGGCTGCAGCTGT+AGG | + | tig0020728:92020-92039 | Msa1385330:intron | 65.0% |
| GGTCCTACAGCTGCAGCCAG+TGG | - | tig0020728:92026-92045 | None:intergenic | 65.0% | |
| TTCGCCCCTGGCTGCAGCAG+AGG | - | tig0020728:91822-91841 | None:intergenic | 70.0% | |
| TCTGCTGCAGCCAGGGGCGA+AGG | + | tig0020728:91821-91840 | Msa1385330:intron | 70.0% | |
| ! | CTGCAGCCAGTGGTGGAGCC+AGG | - | tig0020728:92016-92035 | None:intergenic | 70.0% |
| !! | CCAGGGGCGAAGGCACCACC+CGG | + | tig0020728:91831-91850 | Msa1385330:intron | 75.0% |
| ! | AAGGCACCACCCGGCGAGCC+CGG | + | tig0020728:91840-91859 | Msa1385330:intron | 75.0% |
| AGACGAGTGCCCGGGCTCGC+CGG | - | tig0020728:91853-91872 | None:intergenic | 75.0% | |
| GCGAGCCCGGGCACTCGTCT+GGG | + | tig0020728:91853-91872 | Msa1385330:intron | 75.0% | |
| ! | CCGGGTGGTGCCTTCGCCCC+TGG | - | tig0020728:91834-91853 | None:intergenic | 80.0% |
| ! | AGGCACCACCCGGCGAGCCC+GGG | + | tig0020728:91841-91860 | Msa1385330:intron | 80.0% |
| ! | GACGAGTGCCCGGGCTCGCC+GGG | - | tig0020728:91852-91871 | None:intergenic | 80.0% |
| ! | GGCGAGCCCGGGCACTCGTC+TGG | + | tig0020728:91852-91871 | Msa1385330:intron | 80.0% |
| ! | GAGTGCCCGGGCTCGCCGGG+TGG | - | tig0020728:91849-91868 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020728 | gene | 90876 | 93518 | 90876 | ID=Msa1385330;Name=Msa1385330 |
| tig0020728 | mRNA | 90876 | 93518 | 90876 | ID=Msa1385330-mRNA-1;Parent=Msa1385330;Name=Msa1385330-mRNA-1;_AED=0.08;_eAED=0.08;_QI=43|1|1|1|1|1|3|397|273 |
| tig0020728 | exon | 90876 | 90960 | 90876 | ID=Msa1385330-mRNA-1:exon:9525;Parent=Msa1385330-mRNA-1 |
| tig0020728 | exon | 91350 | 91467 | 91350 | ID=Msa1385330-mRNA-1:exon:9526;Parent=Msa1385330-mRNA-1 |
| tig0020728 | exon | 92460 | 93518 | 92460 | ID=Msa1385330-mRNA-1:exon:9527;Parent=Msa1385330-mRNA-1 |
| tig0020728 | five_prime_UTR | 90876 | 90918 | 90876 | ID=Msa1385330-mRNA-1:five_prime_utr;Parent=Msa1385330-mRNA-1 |
| tig0020728 | CDS | 90919 | 90960 | 90919 | ID=Msa1385330-mRNA-1:cds;Parent=Msa1385330-mRNA-1 |
| tig0020728 | CDS | 91350 | 91467 | 91350 | ID=Msa1385330-mRNA-1:cds;Parent=Msa1385330-mRNA-1 |
| tig0020728 | CDS | 92460 | 93121 | 92460 | ID=Msa1385330-mRNA-1:cds;Parent=Msa1385330-mRNA-1 |
| tig0020728 | three_prime_UTR | 93122 | 93518 | 93122 | ID=Msa1385330-mRNA-1:three_prime_utr;Parent=Msa1385330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
