AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0313900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313900 MtrunA17_Chr2g0283851 96.049 405 16 0 1 405 1 405 0.0 816
Msa0313900 MtrunA17_Chr6g0456681 49.495 396 185 10 13 400 20 408 2.41e-129 379
Msa0313900 MtrunA17_Chr6g0456691 47.816 412 177 14 14 400 21 419 4.16e-123 363
Msa0313900 MtrunA17_Chr8g0387921 42.373 354 184 9 58 401 77 420 1.97e-92 284
Msa0313900 MtrunA17_Chr8g0347321 38.889 360 191 12 56 401 96 440 3.39e-84 264
Msa0313900 MtrunA17_Chr5g0414061 40.000 355 188 11 60 402 99 440 2.93e-82 259
Msa0313900 MtrunA17_Chr6g0451321 38.649 370 203 11 45 404 106 461 8.76e-80 253
Msa0313900 MtrunA17_Chr8g0391481 37.057 367 196 14 51 400 24 372 1.31e-77 245
Msa0313900 MtrunA17_Chr7g0226991 37.398 369 198 14 50 402 53 404 4.38e-77 244
Msa0313900 MtrunA17_Chr3g0140371 36.813 364 190 13 59 404 22 363 1.19e-76 242
Msa0313900 MtrunA17_Chr5g0414091 37.640 356 197 12 60 402 90 433 1.26e-75 241
Msa0313900 MtrunA17_Chr5g0414041 39.410 373 200 14 43 402 76 435 4.95e-74 238
Msa0313900 MtrunA17_Chr7g0221281 50.000 242 112 7 168 404 3 240 4.91e-73 229
Msa0313900 MtrunA17_Chr5g0414051 34.644 407 226 18 15 402 37 422 1.95e-72 233
Msa0313900 MtrunA17_Chr1g0188191 35.165 364 204 10 56 402 235 583 1.16e-65 219
Msa0313900 MtrunA17_Chr6g0476041 34.840 376 189 16 56 402 168 516 5.98e-64 213
Msa0313900 MtrunA17_Chr7g0259711 31.608 367 207 14 56 402 92 434 2.36e-45 162
Msa0313900 MtrunA17_Chr1g0175671 30.214 374 202 13 56 403 171 511 2.00e-44 161
Msa0313900 MtrunA17_Chr4g0071391 30.663 362 211 14 56 401 110 447 5.26e-44 159
Msa0313900 MtrunA17_Chr7g0269991 32.500 360 207 12 56 404 138 472 7.55e-44 159
Msa0313900 MtrunA17_Chr7g0221271 50.327 153 66 4 35 186 62 205 3.81e-43 149
Msa0313900 MtrunA17_Chr2g0287901 30.854 363 214 12 56 402 98 439 4.19e-42 154
Msa0313900 MtrunA17_Chr7g0258851 29.947 374 203 15 56 402 249 590 8.70e-42 155
Msa0313900 MtrunA17_Chr8g0368461 31.565 377 207 16 56 404 179 532 1.75e-41 153
Msa0313900 MtrunA17_Chr3g0105301 32.308 390 187 19 32 396 35 372 6.12e-41 149
Msa0313900 MtrunA17_Chr5g0413271 29.810 369 205 12 56 404 146 480 1.99e-40 149
Msa0313900 MtrunA17_Chr4g0068111 27.701 361 230 11 53 401 113 454 6.51e-40 148
Msa0313900 MtrunA17_Chr3g0113671 30.667 375 206 15 56 404 107 453 5.48e-39 145
Msa0313900 MtrunA17_Chr2g0283581 30.789 393 225 17 20 403 6 360 7.52e-39 142
Msa0313900 MtrunA17_Chr4g0070341 28.852 357 224 12 56 400 133 471 9.63e-39 145
Msa0313900 MtrunA17_Chr3g0114101 29.584 409 241 16 9 396 44 426 1.87e-38 143
Msa0313900 MtrunA17_Chr8g0360521 28.883 367 213 16 50 396 67 405 3.24e-38 142
Msa0313900 MtrunA17_Chr4g0006991 30.053 376 207 17 51 400 82 427 3.70e-38 142
Msa0313900 MtrunA17_Chr5g0430371 30.971 381 197 19 51 401 55 399 6.45e-37 138
Msa0313900 MtrunA17_Chr7g0221291 63.736 91 32 1 56 145 80 170 8.64e-37 132
Msa0313900 MtrunA17_Chr3g0091031 30.362 359 191 15 53 396 30 344 9.36e-36 134
Msa0313900 MtrunA17_Chr8g0384151 29.178 353 215 12 56 400 91 416 1.31e-35 135
Msa0313900 MtrunA17_Chr3g0085081 30.084 359 192 13 53 396 30 344 3.92e-35 132
Msa0313900 MtrunA17_Chr1g0213281 28.649 370 217 15 56 402 176 521 7.58e-35 135
Msa0313900 MtrunA17_Chr7g0242701 29.333 375 201 16 56 400 87 427 1.85e-34 132
Msa0313900 MtrunA17_Chr7g0243301 27.404 416 249 19 9 396 15 405 2.00e-34 132
Msa0313900 MtrunA17_Chr4g0005481 28.307 378 211 16 49 400 103 446 2.06e-34 132
Msa0313900 MtrunA17_Chr5g0437601 28.455 369 217 16 50 397 79 421 5.26e-34 131
Msa0313900 MtrunA17_Chr8g0384421 27.095 358 221 11 60 400 138 472 6.75e-34 131
Msa0313900 MtrunA17_Chr5g0414081 34.314 204 115 9 214 402 2 201 1.16e-33 124
Msa0313900 MtrunA17_Chr1g0171171 29.558 362 192 15 59 400 57 375 4.09e-33 127
Msa0313900 MtrunA17_Chr4g0005491 26.781 407 264 13 14 402 20 410 1.13e-32 127
Msa0313900 MtrunA17_Chr1g0210771 30.471 361 183 16 59 396 63 378 1.15e-32 126
Msa0313900 MtrunA17_Chr3g0097891 28.351 388 222 17 21 396 3 346 2.12e-32 125
Msa0313900 MtrunA17_Chr3g0085071 27.606 355 209 11 56 400 47 363 3.52e-32 125
Msa0313900 MtrunA17_Chr2g0314801 28.652 356 207 15 56 400 34 353 4.17e-32 124
Msa0313900 MtrunA17_Chr2g0325481 28.940 349 203 13 56 396 51 362 6.10e-31 121
Msa0313900 MtrunA17_Chr5g0437291 28.571 371 217 14 52 398 162 508 3.57e-30 121
Msa0313900 MtrunA17_Chr4g0045941 29.086 361 207 16 43 393 22 343 5.16e-29 115
Msa0313900 MtrunA17_Chr6g0455901 26.630 368 210 13 60 397 76 413 6.16e-29 117
Msa0313900 MtrunA17_Chr4g0045951 27.157 394 236 15 10 393 3 355 8.47e-29 115
Msa0313900 MtrunA17_Chr4g0041011 26.823 384 244 10 20 396 6 359 1.97e-28 114
Msa0313900 MtrunA17_Chr2g0314791 28.696 345 190 16 69 402 48 347 1.74e-26 108
Msa0313900 MtrunA17_Chr4g0049421 26.611 357 239 10 56 401 49 393 2.86e-26 109
Msa0313900 MtrunA17_Chr3g0126021 26.431 367 228 13 50 402 124 462 5.99e-26 108
Msa0313900 MtrunA17_Chr5g0413851 28.093 388 225 19 26 402 17 361 9.71e-26 107
Msa0313900 MtrunA17_Chr1g0209921 38.667 150 78 4 27 164 13 160 7.07e-23 97.1
Msa0313900 MtrunA17_Chr1g0178081 26.877 253 165 7 16 255 11 256 8.98e-21 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313900 AT5G15890.1 49.608 383 162 12 32 400 157 522 3.22e-120 359
Msa0313900 AT5G15900.1 45.455 418 194 12 7 402 6 411 6.29e-117 347
Msa0313900 AT5G15900.2 45.455 418 194 12 7 402 25 430 1.01e-116 347
Msa0313900 AT3G02440.2 45.682 359 173 10 56 405 136 481 3.02e-104 317
Msa0313900 AT3G02440.1 45.682 359 173 10 56 405 128 473 3.76e-104 317
Msa0313900 AT1G01430.1 39.031 392 203 13 32 401 71 448 2.83e-89 278
Msa0313900 AT4G23790.1 38.753 369 195 12 50 401 74 428 2.14e-87 272
Msa0313900 AT4G11090.1 35.859 396 218 12 30 401 43 426 7.42e-86 268
Msa0313900 AT4G01080.1 40.395 354 181 10 56 397 92 427 1.96e-84 265
Msa0313900 AT1G70230.1 37.017 362 194 14 51 402 76 413 7.45e-78 247
Msa0313900 AT3G28150.1 36.667 360 210 12 50 403 66 413 9.08e-75 239
Msa0313900 AT4G25360.1 35.000 380 202 11 47 402 168 526 1.82e-65 218
Msa0313900 AT4G25360.2 35.000 380 202 11 47 402 168 526 1.82e-65 218
Msa0313900 AT5G51640.1 34.555 382 204 10 46 402 130 490 3.37e-65 216
Msa0313900 AT5G49340.1 31.781 365 212 11 53 401 99 442 4.23e-49 173
Msa0313900 AT5G20590.1 30.055 366 209 14 56 401 142 480 5.44e-44 159
Msa0313900 AT1G60790.1 31.452 372 208 15 56 405 191 537 3.31e-43 159
Msa0313900 AT3G12060.1 30.108 372 207 14 53 401 195 536 6.06e-43 158
Msa0313900 AT3G06080.2 32.075 371 203 16 56 403 104 448 3.32e-42 154
Msa0313900 AT3G11570.1 30.857 350 201 11 70 403 98 422 1.91e-40 149
Msa0313900 AT3G11030.1 29.781 366 214 14 52 397 103 445 7.71e-40 148
Msa0313900 AT5G19160.1 29.508 366 220 10 56 402 100 446 1.10e-39 147
Msa0313900 AT5G64020.1 29.301 372 215 12 56 400 58 408 1.92e-39 145
Msa0313900 AT3G62390.1 30.114 352 209 13 60 399 143 469 2.60e-39 147
Msa0313900 AT1G48880.1 30.163 368 212 14 47 402 107 441 7.73e-39 145
Msa0313900 AT2G40160.1 29.428 367 223 13 56 403 78 427 9.59e-39 144
Msa0313900 AT5G06700.1 28.841 371 211 14 57 403 257 598 9.84e-39 147
Msa0313900 AT2G40160.2 28.831 385 238 13 37 402 59 426 3.04e-38 143
Msa0313900 AT1G73140.1 29.067 375 214 17 50 402 63 407 6.59e-38 142
Msa0313900 AT5G06230.2 28.863 343 217 9 70 403 43 367 8.79e-38 140
Msa0313900 AT5G06230.1 28.863 343 217 9 70 403 84 408 1.76e-37 140
Msa0313900 AT5G58600.1 29.570 372 205 16 53 401 64 401 3.40e-37 139
Msa0313900 AT5G64470.3 28.184 369 233 11 46 401 46 395 4.23e-37 139
Msa0313900 AT2G14530.1 28.065 367 211 13 60 400 67 406 2.20e-36 137
Msa0313900 AT2G34070.1 30.641 359 209 14 51 403 61 385 2.34e-36 137
Msa0313900 AT2G40150.1 30.809 383 224 15 38 398 54 417 1.39e-35 135
Msa0313900 AT1G29050.1 28.371 356 210 12 56 403 62 380 1.56e-35 134
Msa0313900 AT2G30900.1 28.756 386 233 14 21 396 8 361 1.74e-35 134
Msa0313900 AT5G64470.2 27.807 374 234 11 46 401 46 401 4.24e-35 134
Msa0313900 AT2G30010.1 29.412 391 209 19 40 401 45 397 6.49e-35 133
Msa0313900 AT2G30010.2 29.412 391 209 19 40 401 88 440 1.16e-34 133
Msa0313900 AT5G20680.6 27.807 374 225 14 46 400 110 457 2.11e-34 133
Msa0313900 AT5G20680.2 27.807 374 225 14 46 400 186 533 3.04e-34 134
Msa0313900 AT5G20680.4 27.807 374 225 14 46 400 204 551 3.66e-34 134
Msa0313900 AT5G20680.1 27.807 374 225 14 46 400 204 551 3.66e-34 134
Msa0313900 AT5G20680.3 27.807 374 225 14 46 400 204 551 3.66e-34 134
Msa0313900 AT5G20680.5 27.807 374 225 14 46 400 204 551 3.66e-34 134
Msa0313900 AT3G55990.1 29.539 369 213 15 52 398 137 480 5.81e-34 132
Msa0313900 AT5G01620.2 28.010 382 219 16 44 400 99 449 1.37e-33 130
Msa0313900 AT5G01620.1 28.010 382 219 16 44 400 99 449 1.37e-33 130
Msa0313900 AT2G40320.1 27.273 385 228 17 36 397 64 419 1.64e-33 130
Msa0313900 AT5G01620.3 28.010 382 219 16 44 400 107 457 2.04e-33 130
Msa0313900 AT5G01360.2 28.302 371 215 15 51 397 32 375 2.52e-33 129
Msa0313900 AT5G01360.1 28.032 371 216 15 51 397 88 431 3.55e-33 129
Msa0313900 AT3G14850.2 29.888 358 201 14 56 400 35 355 1.15e-32 126
Msa0313900 AT2G42570.1 28.841 371 219 13 34 396 27 360 2.47e-31 123
Msa0313900 AT2G31110.2 27.945 365 208 14 47 398 37 359 1.45e-30 120
Msa0313900 AT2G38320.1 26.446 363 233 11 56 401 60 405 3.50e-30 120
Msa0313900 AT5G64470.4 28.214 280 182 7 46 315 46 316 4.42e-28 113
Msa0313900 AT5G64470.1 28.470 281 181 8 46 315 46 317 1.06e-27 112
Msa0313900 AT2G37720.1 25.654 382 226 13 45 400 133 482 1.16e-27 114
Msa0313900 AT3G54260.1 26.796 362 205 14 59 401 55 375 1.42e-27 112
Msa0313900 AT5G20590.2 31.621 253 142 10 56 293 142 378 1.89e-27 112
Msa0313900 AT5G19160.2 33.074 257 147 9 50 293 92 336 1.26e-26 109
Msa0313900 AT5G58600.2 37.297 185 93 8 53 232 64 230 1.43e-26 108
Msa0313900 AT2G38320.2 25.369 339 221 9 78 401 1 322 2.03e-26 108
Msa0313900 AT1G78710.1 27.247 356 212 13 56 401 39 357 1.46e-25 107
Msa0313900 AT3G62390.2 29.749 279 170 10 60 325 143 408 4.24e-25 106
Msa0313900 AT2G40160.3 29.658 263 170 7 37 293 59 312 6.65e-25 104
Msa0313900 AT3G06080.1 33.202 253 138 11 56 293 104 340 7.84e-25 104
Msa0313900 AT2G30900.2 35.673 171 98 6 21 186 8 171 5.13e-24 100
Msa0313900 AT5G06230.3 28.085 235 151 6 70 296 84 308 1.39e-20 92.0
Msa0313900 AT2G31110.3 34.752 141 85 2 47 186 37 171 1.09e-19 88.6
Msa0313900 AT1G78710.2 32.331 133 80 4 56 186 32 156 3.97e-14 73.2
Msa0313900 AT2G34070.2 26.761 284 169 13 125 403 2 251 5.38e-14 72.0
Msa0313900 AT3G14850.1 26.736 288 162 13 125 400 2 252 1.57e-13 70.5

Find 76 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAGTAATGAACATAAA+TGG 0.236226 2_4:-9358398 Msa0313900:CDS
GATGGACATCCTAACAAATA+TGG 0.236825 2_4:-9358240 Msa0313900:CDS
GGACATGTTTGATTGTAATA+AGG 0.269234 2_4:+9361642 None:intergenic
CCATTCACATTCTACGAAAA+TGG 0.269331 2_4:-9358618 Msa0313900:CDS
CGACTTGTCCAAGCTGTATC+TGG 0.279200 2_4:+9358693 None:intergenic
AAATACAATCAAACCTTAAA+AGG 0.290080 2_4:+9357939 None:intergenic
TCGCCATTCTCGAAATGATT+TGG 0.295458 2_4:+9358456 None:intergenic
GGGAAGAATGGTTCACGTTT+TGG 0.297933 2_4:-9358300 Msa0313900:CDS
CTGAATTAGCAATTCTTCAT+AGG 0.322750 2_4:+9358008 None:intergenic
GTTGTAGATGTAAGATTTAG+AGG 0.331571 2_4:+9358758 None:intergenic
TACGAAAATGGTACAATTGT+TGG 0.334836 2_4:-9358606 Msa0313900:CDS
AGCTGTAACAACTTGTTCTT+AGG 0.334924 2_4:-9361690 Msa0313900:CDS
AGAATTGCTAATTCAGTATT+AGG 0.338300 2_4:-9358001 Msa0313900:three_prime_UTR
TTCATTTGTATTATGTGATC+TGG 0.362050 2_4:+9357978 None:intergenic
TCTCTATATGATCATGAGAA+TGG 0.372141 2_4:-9358133 Msa0313900:CDS
ACCACCATTTGAAATATGTT+AGG 0.397436 2_4:+9358838 None:intergenic
GGGAACAAGAAAATCCGTTT+AGG 0.398457 2_4:+9361813 None:intergenic
AACAAATATGGGCATGTGTC+TGG 0.408166 2_4:-9358228 Msa0313900:CDS
TGTATAATCTCTAGACCATA+TGG 0.419538 2_4:+9358366 None:intergenic
GGTTCTACAATAGTTGTTGT+TGG 0.420927 2_4:+9361714 None:intergenic
CTCTATATGATCATGAGAAT+GGG 0.421802 2_4:-9358132 Msa0313900:CDS
TCAATAGAACTCAACTATTA+CGG 0.422237 2_4:-9358564 Msa0313900:CDS
CATTTATGTTCATTACTGAA+TGG 0.429070 2_4:+9358399 None:intergenic
GACACATGCCCATATTTGTT+AGG 0.433571 2_4:+9358231 None:intergenic
GCCAACCCTTTGAACAGATT+AGG 0.439293 2_4:+9358498 None:intergenic
AGTGCTGCAAAGAACAATAC+AGG 0.440892 2_4:-9358321 Msa0313900:CDS
TCTCCAAATCATTTCGAGAA+TGG 0.442620 2_4:-9358459 Msa0313900:CDS
GCATTAATGATTGTGTTCAT+TGG 0.443179 2_4:-9358194 Msa0313900:CDS
ATTCAGTAATGAACATAAAT+GGG 0.446790 2_4:-9358397 Msa0313900:CDS
ACAGCTTGGACAAGTCGAAT+TGG 0.448449 2_4:-9358687 Msa0313900:CDS
AAAGACAACTAATAATGTAT+TGG 0.451029 2_4:+9361960 None:intergenic
ATCTCATTAATAGTGTCAAC+AGG 0.452614 2_4:+9358159 None:intergenic
GATTATACATCAAATACAAT+TGG 0.453202 2_4:-9358352 Msa0313900:CDS
AAAGGAAGTTCACAATCATC+AGG 0.459292 2_4:+9361546 None:intergenic
TGTGTTCATTGGTGTATGCC+AGG 0.462264 2_4:-9358183 Msa0313900:CDS
AAGACCTAACATATTTCAAA+TGG 0.463983 2_4:-9358842 Msa0313900:CDS
ATGAATCCTAATCTGTTCAA+AGG 0.468604 2_4:-9358504 Msa0313900:CDS
GATTGTTAAGGGAAAGTCAA+TGG 0.479240 2_4:-9361499 Msa0313900:CDS
TCCTAATCTGTTCAAAGGGT+TGG 0.479269 2_4:-9358499 Msa0313900:CDS
CACTTAAGAAAATCACTGTC+TGG 0.480060 2_4:+9361579 None:intergenic
ATGGACATCCTAACAAATAT+GGG 0.489535 2_4:-9358239 Msa0313900:CDS
TTAATAGTGTCAACAGGCCC+TGG 0.494028 2_4:+9358165 None:intergenic
AAATGGGAGGTGCATCCATA+TGG 0.498779 2_4:-9358381 Msa0313900:CDS
TCATCTAGATAAAGACTCTC+GGG 0.508720 2_4:+9358717 None:intergenic
ACCTAACATATTTCAAATGG+TGG 0.511538 2_4:-9358839 Msa0313900:CDS
TGAATCCTAATCTGTTCAAA+GGG 0.511700 2_4:-9358503 Msa0313900:CDS
AAACAGAACTGTCTTATTCA+CGG 0.520840 2_4:-9361606 Msa0313900:CDS
AAGAACAATACAGGGAAGAA+TGG 0.522710 2_4:-9358312 Msa0313900:CDS
TTCATCTAGATAAAGACTCT+CGG 0.524467 2_4:+9358716 None:intergenic
ACAACTTGTTCTTAGGAACA+TGG 0.533263 2_4:-9361683 Msa0313900:CDS
TATTTGTTAGGATGTCCATC+AGG 0.533554 2_4:+9358243 None:intergenic
CTCTATTGGGAGAAATCAGA+TGG 0.539667 2_4:-9361463 Msa0313900:CDS
GGCGAATGGAACAATGGTGG+AGG 0.551143 2_4:-9358438 Msa0313900:CDS
CAACTTGTTCTTAGGAACAT+GGG 0.555004 2_4:-9361682 Msa0313900:CDS
TTAAACAATGTATTGAACAA+AGG 0.560079 2_4:-9358044 Msa0313900:three_prime_UTR
TTTCGTAGAATGTGAATGGT+CGG 0.563386 2_4:+9358622 None:intergenic
CTTTCAGGTTGCTCGTGCTG+AGG 0.566325 2_4:-9358895 Msa0313900:intron
TAGATGAACCAGATACAGCT+TGG 0.571908 2_4:-9358701 Msa0313900:CDS
GTGTTCATTGGTGTATGCCA+GGG 0.577510 2_4:-9358182 Msa0313900:CDS
ATCATTTCGAGAATGGCGAA+TGG 0.594806 2_4:-9358452 Msa0313900:CDS
TGATTGAAGTGAATGAGAAG+AGG 0.595501 2_4:+9361759 None:intergenic
AATGTATTGAACAAAGGTGT+TGG 0.601069 2_4:-9358038 Msa0313900:three_prime_UTR
TTATTATTATCATAGAGTCA+TGG 0.608810 2_4:-9361865 Msa0313900:exon
AAGAACAAGTTGTTACAGCT+AGG 0.609399 2_4:+9361693 None:intergenic
AACTGAGTTGCATCAAACAA+AGG 0.611259 2_4:+9361528 None:intergenic
GCAATGTTGATGAGACCTGA+TGG 0.619929 2_4:-9358258 Msa0313900:CDS
AGGGGACCATAGCATTGCAA+TGG 0.626452 2_4:+9358794 None:intergenic
CAAGAATGAGTACTGTGAGT+GGG 0.638314 2_4:+9361793 None:intergenic
GAGAATGGCGAATGGAACAA+TGG 0.644400 2_4:-9358444 Msa0313900:CDS
ACAAGAATGAGTACTGTGAG+TGG 0.651564 2_4:+9361792 None:intergenic
GCGAATGGAACAATGGTGGA+GGG 0.654886 2_4:-9358437 Msa0313900:CDS
TAGAGTCATGGAGTCATGTG+AGG 0.667840 2_4:-9361853 Msa0313900:exon
AATGGCGAATGGAACAATGG+TGG 0.671698 2_4:-9358441 Msa0313900:CDS
CAGTAATGAACATAAATGGG+AGG 0.675573 2_4:-9358394 Msa0313900:CDS
GTGCTGCAAAGAACAATACA+GGG 0.679216 2_4:-9358320 Msa0313900:CDS
GTATTGGAAACTGCTCAACG+TGG 0.779757 2_4:+9361976 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAGCAAAAAATAT+AGG + chr2_4:9358563-9358582 None:intergenic 10.0%
!!! TTTTTGTTCATATAAATTTT+TGG - chr2_4:9358646-9358665 Msa0313900:CDS 10.0%
!!! AAAATTTGCTTATTTATTTT+TGG + chr2_4:9358868-9358887 None:intergenic 10.0%
!! GTTTATTATGTTTAATTAAA+AGG - chr2_4:9358982-9359001 Msa0313900:intron 10.0%
!!! TTTTTTTTTTTTTTTGTAGA+TGG - chr2_4:9359414-9359433 Msa0313900:intron 10.0%
!! AAAATTTAGAAGTAATAAAT+AGG - chr2_4:9359769-9359788 Msa0313900:intron 10.0%
!! TTAGTCAAAAACAAATAAAA+GGG + chr2_4:9358011-9358030 None:intergenic 15.0%
!! ATTAGTCAAAAACAAATAAA+AGG + chr2_4:9358012-9358031 None:intergenic 15.0%
!!! TTGCTTTAATTTTTGTTTAA+AGG - chr2_4:9358570-9358589 Msa0313900:CDS 15.0%
!!! AAAAAAAAATTCTGAAATAG+AGG + chr2_4:9358720-9358739 None:intergenic 15.0%
!! AAATTATCAAAATTATGAAC+TGG - chr2_4:9358741-9358760 Msa0313900:CDS 15.0%
!!! ATTTAAGTCAAACTTTTTTT+GGG - chr2_4:9358810-9358829 Msa0313900:CDS 15.0%
!! AAAAAAACATTATCTCAATA+AGG + chr2_4:9359400-9359419 None:intergenic 15.0%
!!! AAAATTTGTAAGTTTTTGTT+TGG + chr2_4:9359588-9359607 None:intergenic 15.0%
!!! AAGTATATATACAACATTTT+GGG + chr2_4:9360166-9360185 None:intergenic 15.0%
!!! AAAGTATATATACAACATTT+TGG + chr2_4:9360167-9360186 None:intergenic 15.0%
!!! ATATATACTTTTCTAATTAG+AGG - chr2_4:9360176-9360195 Msa0313900:intron 15.0%
!!! TTTTGTACTCAATATATTTA+AGG - chr2_4:9360210-9360229 Msa0313900:intron 15.0%
!! GTATAAGTAAAAATAATTAG+AGG - chr2_4:9360262-9360281 Msa0313900:intron 15.0%
!!! TTTTGTACTCAATATATTTA+AGG - chr2_4:9360210-9360229 Msa0313900:intron 15.0%
!! TTACTTATATAAAACATTAG+AGG + chr2_4:9360338-9360357 None:intergenic 15.0%
!!! GCTTAAATTAAGTTTTATTT+AGG + chr2_4:9361023-9361042 None:intergenic 15.0%
!!! AAATTTGTATACTTTTGTTT+TGG - chr2_4:9361863-9361882 Msa0313900:exon 15.0%
!! AAAGACAACTAATAATGTAT+TGG + chr2_4:9357986-9358005 None:intergenic 20.0%
!! TTATTATTATCATAGAGTCA+TGG - chr2_4:9358078-9358097 Msa0313900:three_prime_UTR 20.0%
!!! TAATAAGGTTGTTTTAGATA+AGG + chr2_4:9358289-9358308 None:intergenic 20.0%
!!! TTCTGTTTTTCAGTTATAAA+AGG + chr2_4:9358325-9358344 None:intergenic 20.0%
!!! GTTTTCCATTTCAAAAAAAA+TGG + chr2_4:9358767-9358786 None:intergenic 20.0%
!!! CATTTAAGTCAAACTTTTTT+TGG - chr2_4:9358809-9358828 Msa0313900:CDS 20.0%
!!! AAGAAAAAACACTTTTCAAA+TGG - chr2_4:9358933-9358952 Msa0313900:intron 20.0%
!!! AATTTTTCATCTAACACATT+TGG + chr2_4:9359029-9359048 None:intergenic 20.0%
!! ACACATTGACAAAAAAATAT+TGG - chr2_4:9359055-9359074 Msa0313900:intron 20.0%
!!! ACAAAAAAATATTGGCTTTT+AGG - chr2_4:9359063-9359082 Msa0313900:intron 20.0%
!!! TTTTTGTTTGGAAATTTGAA+AGG - chr2_4:9359169-9359188 Msa0313900:intron 20.0%
!!! AACGGTTGATATTATTTAAT+TGG - chr2_4:9359278-9359297 Msa0313900:intron 20.0%
!!! TTTTAACTTTGTTGTAATGA+AGG - chr2_4:9359604-9359623 Msa0313900:intron 20.0%
!!! TTTAACTTTGTTGTAATGAA+GGG - chr2_4:9359605-9359624 Msa0313900:intron 20.0%
!! AAATAAACATGCGTTTATTT+AGG + chr2_4:9359914-9359933 None:intergenic 20.0%
!! CAACAAAGAAAATCTATATT+GGG + chr2_4:9360059-9360078 None:intergenic 20.0%
!! ACAACAAAGAAAATCTATAT+TGG + chr2_4:9360060-9360079 None:intergenic 20.0%
!! TTACTTATACAAGAAATTAG+AGG + chr2_4:9360252-9360271 None:intergenic 20.0%
!! TTCAAATTAAGATGTGTTTA+AGG - chr2_4:9360525-9360544 Msa0313900:intron 20.0%
!! TTTCTTTCACTATCATAATA+TGG - chr2_4:9360959-9360978 Msa0313900:intron 20.0%
!! ATTCAGTAATGAACATAAAT+GGG - chr2_4:9361546-9361565 Msa0313900:CDS 20.0%
!! GATTATACATCAAATACAAT+TGG - chr2_4:9361591-9361610 Msa0313900:CDS 20.0%
!! TTAAACAATGTATTGAACAA+AGG - chr2_4:9361899-9361918 Msa0313900:five_prime_UTR 20.0%
!!! AATGATTAATTCTCCTTTTA+AGG - chr2_4:9361991-9362010 Msa0313900:five_prime_UTR 20.0%
!! AAATACAATCAAACCTTAAA+AGG + chr2_4:9362007-9362026 None:intergenic 20.0%
!!! TCAGTTTTTCAAGATTGTTA+AGG - chr2_4:9358432-9358451 Msa0313900:CDS 25.0%
!!! CAGTTTTTCAAGATTGTTAA+GGG - chr2_4:9358433-9358452 Msa0313900:CDS 25.0%
! AAACAACCAAACTAATATTG+GGG + chr2_4:9358622-9358641 None:intergenic 25.0%
! CAAACAACCAAACTAATATT+GGG + chr2_4:9358623-9358642 None:intergenic 25.0%
! TCAAACAACCAAACTAATAT+TGG + chr2_4:9358624-9358643 None:intergenic 25.0%
! GAAGAAAACAAATATAAGGT+GGG + chr2_4:9359139-9359158 None:intergenic 25.0%
! ATGCGAAGAAAACAAATATA+AGG + chr2_4:9359143-9359162 None:intergenic 25.0%
! AACCGTTAATTTAAACTAGA+TGG + chr2_4:9359265-9359284 None:intergenic 25.0%
! GACTAATTGTGTAATATTCA+TGG - chr2_4:9359304-9359323 Msa0313900:intron 25.0%
! TTGAAAAAAGTAAGGAGAAA+AGG + chr2_4:9359545-9359564 None:intergenic 25.0%
!!! TTTTGTTTGGAAGTTTAGTA+GGG + chr2_4:9359575-9359594 None:intergenic 25.0%
!!! TTTTTGTTTGGAAGTTTAGT+AGG + chr2_4:9359576-9359595 None:intergenic 25.0%
!! TTAACTTTGTTGTAATGAAG+GGG - chr2_4:9359606-9359625 Msa0313900:intron 25.0%
! CCTATTATAGGAAGATAATT+TGG + chr2_4:9359693-9359712 None:intergenic 25.0%
! CCAAATTATCTTCCTATAAT+AGG - chr2_4:9359690-9359709 Msa0313900:intron 25.0%
! AAATAGGAACCATTAAATCA+AGG - chr2_4:9359785-9359804 Msa0313900:intron 25.0%
!!! TGTTAATGGACTAAACAATT+GGG + chr2_4:9359842-9359861 None:intergenic 25.0%
!!! TTTTAGCTTAGCAAAGAAAA+CGG + chr2_4:9359865-9359884 None:intergenic 25.0%
!! AACCTCATTTGTTAAATGTT+CGG - chr2_4:9360383-9360402 Msa0313900:intron 25.0%
! AAATTAAGATGTGTTTAAGG+TGG - chr2_4:9360528-9360547 Msa0313900:intron 25.0%
!! TTAGGTTTAAAATGAAGCAT+TGG - chr2_4:9360554-9360573 Msa0313900:intron 25.0%
!!! CATATATTACTGTTTTGAAC+AGG + chr2_4:9360855-9360874 None:intergenic 25.0%
! AAAGAGATACTTGAAAGAAT+TGG + chr2_4:9360914-9360933 None:intergenic 25.0%
! AAGACCTAACATATTTCAAA+TGG - chr2_4:9361101-9361120 Msa0313900:intron 25.0%
!! TAGAGGATTTTACTAGAAAA+GGG + chr2_4:9361171-9361190 None:intergenic 25.0%
!! TTAGAGGATTTTACTAGAAA+AGG + chr2_4:9361172-9361191 None:intergenic 25.0%
! TCAATAGAACTCAACTATTA+CGG - chr2_4:9361379-9361398 Msa0313900:intron 25.0%
! CATTTATGTTCATTACTGAA+TGG + chr2_4:9361547-9361566 None:intergenic 25.0%
! CATTCAGTAATGAACATAAA+TGG - chr2_4:9361545-9361564 Msa0313900:CDS 25.0%
! AGAATTGCTAATTCAGTATT+AGG - chr2_4:9361942-9361961 Msa0313900:five_prime_UTR 25.0%
! TTCATTTGTATTATGTGATC+TGG + chr2_4:9361968-9361987 None:intergenic 25.0%
! CTACTTGACAAAAAAAAACT+CGG + chr2_4:9362030-9362049 None:intergenic 25.0%
! CAGAGATTTTCAAACCTAAA+CGG - chr2_4:9358116-9358135 Msa0313900:exon 30.0%
GGACATGTTTGATTGTAATA+AGG + chr2_4:9358304-9358323 None:intergenic 30.0%
! AAACAGAACTGTCTTATTCA+CGG - chr2_4:9358337-9358356 Msa0313900:CDS 30.0%
!!! TTTTTGGCTAAATGCAGTAT+TGG - chr2_4:9358662-9358681 Msa0313900:CDS 30.0%
!!! ACTGGCCATTTTTTTTGAAA+TGG - chr2_4:9358759-9358778 Msa0313900:CDS 30.0%
TTTGGGCAAATTTGTCATAT+TGG - chr2_4:9358827-9358846 Msa0313900:CDS 30.0%
AATAGTACTAGAAGAAATCG+AGG - chr2_4:9359112-9359131 Msa0313900:intron 30.0%
CGAAGAAAACAAATATAAGG+TGG + chr2_4:9359140-9359159 None:intergenic 30.0%
!! TCGCATCTGAAATTTTTGTT+TGG - chr2_4:9359157-9359176 Msa0313900:intron 30.0%
TGTTTGGAAATTTGAAAGGA+AGG - chr2_4:9359173-9359192 Msa0313900:intron 30.0%
GTTTGGAAATTTGAAAGGAA+GGG - chr2_4:9359174-9359193 Msa0313900:intron 30.0%
TTTGGAAATTTGAAAGGAAG+GGG - chr2_4:9359175-9359194 Msa0313900:intron 30.0%
! GGCCATCTAGTTTAAATTAA+CGG - chr2_4:9359260-9359279 Msa0313900:intron 30.0%
!! CTAGATTTGTTGTTGATTTG+AGG + chr2_4:9359335-9359354 None:intergenic 30.0%
CTCAAATCAACAACAAATCT+AGG - chr2_4:9359333-9359352 Msa0313900:intron 30.0%
!! GAGAGCTTTTGAAAAAAGTA+AGG + chr2_4:9359553-9359572 None:intergenic 30.0%
TGTCAACTTGAAAACTTGAA+AGG - chr2_4:9359649-9359668 Msa0313900:intron 30.0%
GTCAACTTGAAAACTTGAAA+GGG - chr2_4:9359650-9359669 Msa0313900:intron 30.0%
ATGCATACTACTCCTATTAT+AGG + chr2_4:9359705-9359724 None:intergenic 30.0%
TAAACAATTGGGATAGTATG+GGG + chr2_4:9359831-9359850 None:intergenic 30.0%
CTAAACAATTGGGATAGTAT+GGG + chr2_4:9359832-9359851 None:intergenic 30.0%
ACTAAACAATTGGGATAGTA+TGG + chr2_4:9359833-9359852 None:intergenic 30.0%
!! GTGTTAATGGACTAAACAAT+TGG + chr2_4:9359843-9359862 None:intergenic 30.0%
GCGTTTATTTAGGAAAATGT+TGG + chr2_4:9359904-9359923 None:intergenic 30.0%
ATCCGAACATTTAACAAATG+AGG + chr2_4:9360388-9360407 None:intergenic 30.0%
!! TAGCTTTGAAGATGTGTTAT+TGG - chr2_4:9360593-9360612 Msa0313900:intron 30.0%
!! AGCTTTGAAGATGTGTTATT+GGG - chr2_4:9360594-9360613 Msa0313900:intron 30.0%
CTGAACAATTAGGAGAATTA+GGG - chr2_4:9360624-9360643 Msa0313900:intron 30.0%
AATTAGGAGAATTAGGGTAT+AGG - chr2_4:9360630-9360649 Msa0313900:intron 30.0%
ATTAGGAGAATTAGGGTATA+GGG - chr2_4:9360631-9360650 Msa0313900:intron 30.0%
ACCTAACATATTTCAAATGG+TGG - chr2_4:9361104-9361123 Msa0313900:intron 30.0%
! ACCACCATTTGAAATATGTT+AGG + chr2_4:9361108-9361127 None:intergenic 30.0%
! ATTTTACCATTGCAATGCTA+TGG - chr2_4:9361143-9361162 Msa0313900:intron 30.0%
! AGAGGATTTTACTAGAAAAG+GGG + chr2_4:9361170-9361189 None:intergenic 30.0%
GTTGTAGATGTAAGATTTAG+AGG + chr2_4:9361188-9361207 None:intergenic 30.0%
TTCATCTAGATAAAGACTCT+CGG + chr2_4:9361230-9361249 None:intergenic 30.0%
TACGAAAATGGTACAATTGT+TGG - chr2_4:9361337-9361356 Msa0313900:intron 30.0%
ATGAATCCTAATCTGTTCAA+AGG - chr2_4:9361439-9361458 Msa0313900:CDS 30.0%
TGAATCCTAATCTGTTCAAA+GGG - chr2_4:9361440-9361459 Msa0313900:CDS 30.0%
TGTATAATCTCTAGACCATA+TGG + chr2_4:9361580-9361599 None:intergenic 30.0%
ATGGACATCCTAACAAATAT+GGG - chr2_4:9361704-9361723 Msa0313900:CDS 30.0%
GCATTAATGATTGTGTTCAT+TGG - chr2_4:9361749-9361768 Msa0313900:CDS 30.0%
ATCTCATTAATAGTGTCAAC+AGG + chr2_4:9361787-9361806 None:intergenic 30.0%
TCTCTATATGATCATGAGAA+TGG - chr2_4:9361810-9361829 Msa0313900:CDS 30.0%
CTCTATATGATCATGAGAAT+GGG - chr2_4:9361811-9361830 Msa0313900:CDS 30.0%
! AATGTATTGAACAAAGGTGT+TGG - chr2_4:9361905-9361924 Msa0313900:five_prime_UTR 30.0%
CTGAATTAGCAATTCTTCAT+AGG + chr2_4:9361938-9361957 None:intergenic 30.0%
!!! CTGCAATCGAAGTTTTAAAC+AGG + chr2_4:9357928-9357947 None:intergenic 35.0%
TGATTGAAGTGAATGAGAAG+AGG + chr2_4:9358187-9358206 None:intergenic 35.0%
GGTTCTACAATAGTTGTTGT+TGG + chr2_4:9358232-9358251 None:intergenic 35.0%
AAGAACAAGTTGTTACAGCT+AGG + chr2_4:9358253-9358272 None:intergenic 35.0%
! AGCTGTAACAACTTGTTCTT+AGG - chr2_4:9358253-9358272 Msa0313900:CDS 35.0%
! ACAACTTGTTCTTAGGAACA+TGG - chr2_4:9358260-9358279 Msa0313900:CDS 35.0%
! CAACTTGTTCTTAGGAACAT+GGG - chr2_4:9358261-9358280 Msa0313900:CDS 35.0%
CACTTAAGAAAATCACTGTC+TGG + chr2_4:9358367-9358386 None:intergenic 35.0%
! CAGACAGTGATTTTCTTAAG+TGG - chr2_4:9358365-9358384 Msa0313900:CDS 35.0%
! GTGATTTTCTTAAGTGGAGA+TGG - chr2_4:9358371-9358390 Msa0313900:CDS 35.0%
AAAGGAAGTTCACAATCATC+AGG + chr2_4:9358400-9358419 None:intergenic 35.0%
AACTGAGTTGCATCAAACAA+AGG + chr2_4:9358418-9358437 None:intergenic 35.0%
GATTGTTAAGGGAAAGTCAA+TGG - chr2_4:9358444-9358463 Msa0313900:CDS 35.0%
GTCTATCCCCAATATTAGTT+TGG - chr2_4:9358613-9358632 Msa0313900:CDS 35.0%
TCAGATTTAGTGCTATAGCT+TGG - chr2_4:9359218-9359237 Msa0313900:intron 35.0%
ACAAATCTAGGTCTAGATTG+TGG - chr2_4:9359345-9359364 Msa0313900:intron 35.0%
CAAATCTAGGTCTAGATTGT+GGG - chr2_4:9359346-9359365 Msa0313900:intron 35.0%
AAATCTAGGTCTAGATTGTG+GGG - chr2_4:9359347-9359366 Msa0313900:intron 35.0%
AATTCCTCCATTGAAGTTGA+AGG - chr2_4:9359500-9359519 Msa0313900:intron 35.0%
AGATAGACCTTCAACTTCAA+TGG + chr2_4:9359510-9359529 None:intergenic 35.0%
!!! GTTTTCAAGTTGACAAGTAC+TGG + chr2_4:9359644-9359663 None:intergenic 35.0%
TTATCTCCATGTGCATTGTA+CGG + chr2_4:9359738-9359757 None:intergenic 35.0%
AGGAACCATTAAATCAAGGT+CGG - chr2_4:9359789-9359808 Msa0313900:intron 35.0%
! AGCAAAGAAAACGGTGTTAA+TGG + chr2_4:9359856-9359875 None:intergenic 35.0%
AGTGCTGTAAGCATATTGTT+TGG - chr2_4:9360017-9360036 Msa0313900:intron 35.0%
! TACGATGGTACTCTCTTTTT+AGG + chr2_4:9360114-9360133 None:intergenic 35.0%
! AATGTTCGGATCTAGAACTT+CGG - chr2_4:9360397-9360416 Msa0313900:intron 35.0%
! ATGTGTTTAAGGTGGTGATT+AGG - chr2_4:9360536-9360555 Msa0313900:intron 35.0%
! TGAAGATGTGTTATTGGGTT+AGG - chr2_4:9360599-9360618 Msa0313900:intron 35.0%
! GAAGATGTGTTATTGGGTTA+GGG - chr2_4:9360600-9360619 Msa0313900:intron 35.0%
CCTAATTCTCCTAATTGTTC+AGG + chr2_4:9360626-9360645 None:intergenic 35.0%
CCTGAACAATTAGGAGAATT+AGG - chr2_4:9360623-9360642 Msa0313900:intron 35.0%
AGTTGTCCAAGAGACAATTT+GGG + chr2_4:9360659-9360678 None:intergenic 35.0%
CTGAATCACTAACTCAATGA+AGG + chr2_4:9360800-9360819 None:intergenic 35.0%
CTTCATTGAGTTAGTGATTC+AGG - chr2_4:9360798-9360817 Msa0313900:intron 35.0%
TAATTTAAGCACACCCTTTC+AGG - chr2_4:9361033-9361052 Msa0313900:intron 35.0%
TCATCTAGATAAAGACTCTC+GGG + chr2_4:9361229-9361248 None:intergenic 35.0%
! TTCGACTATGTGATTTTCTC+CGG - chr2_4:9361283-9361302 Msa0313900:intron 35.0%
TTTCGTAGAATGTGAATGGT+CGG + chr2_4:9361324-9361343 None:intergenic 35.0%
! CCATTTTCGTAGAATGTGAA+TGG + chr2_4:9361328-9361347 None:intergenic 35.0%
CCATTCACATTCTACGAAAA+TGG - chr2_4:9361325-9361344 Msa0313900:intron 35.0%
TCTCCAAATCATTTCGAGAA+TGG - chr2_4:9361484-9361503 Msa0313900:CDS 35.0%
CAGTAATGAACATAAATGGG+AGG - chr2_4:9361549-9361568 Msa0313900:CDS 35.0%
AAGAACAATACAGGGAAGAA+TGG - chr2_4:9361631-9361650 Msa0313900:CDS 35.0%
! TATTTGTTAGGATGTCCATC+AGG + chr2_4:9361703-9361722 None:intergenic 35.0%
GATGGACATCCTAACAAATA+TGG - chr2_4:9361703-9361722 Msa0313900:CDS 35.0%
GGGAACAAGAAAATCCGTTT+AGG + chr2_4:9358133-9358152 None:intergenic 40.0%
! CAAGAATGAGTACTGTGAGT+GGG + chr2_4:9358153-9358172 None:intergenic 40.0%
! ACAAGAATGAGTACTGTGAG+TGG + chr2_4:9358154-9358173 None:intergenic 40.0%
! GGAAAGTCAATGGCTTTTGT+CGG - chr2_4:9358454-9358473 Msa0313900:CDS 40.0%
! CTTTTGTCGGTGACTCTATT+GGG - chr2_4:9358467-9358486 Msa0313900:CDS 40.0%
CTCTATTGGGAGAAATCAGA+TGG - chr2_4:9358480-9358499 Msa0313900:CDS 40.0%
GGGCAAATTTGTCATATTGG+AGG - chr2_4:9358830-9358849 Msa0313900:CDS 40.0%
TAGACCTTCAACTTCAATGG+AGG + chr2_4:9359507-9359526 None:intergenic 40.0%
! CTTTGTTGTAATGAAGGGGT+TGG - chr2_4:9359610-9359629 Msa0313900:intron 40.0%
ATACAACCGTACAATGCACA+TGG - chr2_4:9359729-9359748 Msa0313900:intron 40.0%
TGCACATGGAGATAACAAAG+TGG - chr2_4:9359743-9359762 Msa0313900:intron 40.0%
! TTGCACCGACCTTGATTTAA+TGG + chr2_4:9359797-9359816 None:intergenic 40.0%
TAGTCATGTTAGCTGTGTCA+TGG - chr2_4:9360132-9360151 Msa0313900:intron 40.0%
GTTGTCCAAGAGACAATTTG+GGG + chr2_4:9360658-9360677 None:intergenic 40.0%
CAGTTGTCCAAGAGACAATT+TGG + chr2_4:9360660-9360679 None:intergenic 40.0%
CTGTCTTCAAGCATAACTGT+AGG - chr2_4:9360677-9360696 Msa0313900:intron 40.0%
! TTGATCAGATGGTCTTGACT+CGG - chr2_4:9360736-9360755 Msa0313900:intron 40.0%
ATCACATAGACTTGTCCTAG+TGG + chr2_4:9360774-9360793 None:intergenic 40.0%
ACTAGGACAAGTCTATGTGA+TGG - chr2_4:9360773-9360792 Msa0313900:intron 40.0%
AAGCCCATTTCCTTAACGAA+CGG + chr2_4:9360829-9360848 None:intergenic 40.0%
! TTCGTTAAGGAAATGGGCTT+CGG - chr2_4:9360829-9360848 Msa0313900:intron 40.0%
TAGATGAACCAGATACAGCT+TGG - chr2_4:9361242-9361261 Msa0313900:intron 40.0%
TCCTAATCTGTTCAAAGGGT+TGG - chr2_4:9361444-9361463 Msa0313900:CDS 40.0%
!! GTTCAAAGGGTTGGCATTTT+TGG - chr2_4:9361453-9361472 Msa0313900:CDS 40.0%
TCGCCATTCTCGAAATGATT+TGG + chr2_4:9361490-9361509 None:intergenic 40.0%
ATCATTTCGAGAATGGCGAA+TGG - chr2_4:9361491-9361510 Msa0313900:CDS 40.0%
AGTGCTGCAAAGAACAATAC+AGG - chr2_4:9361622-9361641 Msa0313900:CDS 40.0%
GTGCTGCAAAGAACAATACA+GGG - chr2_4:9361623-9361642 Msa0313900:CDS 40.0%
GACACATGCCCATATTTGTT+AGG + chr2_4:9361715-9361734 None:intergenic 40.0%
AACAAATATGGGCATGTGTC+TGG - chr2_4:9361715-9361734 Msa0313900:CDS 40.0%
GTATTGGAAACTGCTCAACG+TGG + chr2_4:9357970-9357989 None:intergenic 45.0%
TAGAGTCATGGAGTCATGTG+AGG - chr2_4:9358090-9358109 Msa0313900:three_prime_UTR 45.0%
! GCTTTTGTCGGTGACTCTAT+TGG - chr2_4:9358466-9358485 Msa0313900:CDS 45.0%
TTTGAAAGGAAGGGGAAGAG+AGG - chr2_4:9359183-9359202 Msa0313900:intron 45.0%
TTGAAAGGAAGGGGAAGAGA+GGG - chr2_4:9359184-9359203 Msa0313900:intron 45.0%
! TAGTGCTATAGCTTGGTGAC+AGG - chr2_4:9359225-9359244 Msa0313900:intron 45.0%
! AGTGCTATAGCTTGGTGACA+GGG - chr2_4:9359226-9359245 Msa0313900:intron 45.0%
GGTGACAGGGTTATAGCTAA+CGG - chr2_4:9359239-9359258 Msa0313900:intron 45.0%
CACAGCTAACATGACTACGA+TGG + chr2_4:9360129-9360148 None:intergenic 45.0%
AAGCAAGCTCCTCAGTCTTT+CGG - chr2_4:9360435-9360454 Msa0313900:intron 45.0%
ACCATCTGATCAAGTCGAGA+CGG + chr2_4:9360729-9360748 None:intergenic 45.0%
!!! GGTCTTGACTCGGTCTTTTA+TGG - chr2_4:9360746-9360765 Msa0313900:intron 45.0%
! CGGTCTTTTATGGTTCCACT+AGG - chr2_4:9360756-9360775 Msa0313900:intron 45.0%
TGACCCGTTCGTTAAGGAAA+TGG - chr2_4:9360822-9360841 Msa0313900:intron 45.0%
GACCCGTTCGTTAAGGAAAT+GGG - chr2_4:9360823-9360842 Msa0313900:intron 45.0%
AGCCCATTTCCTTAACGAAC+GGG + chr2_4:9360828-9360847 None:intergenic 45.0%
ACAGCTTGGACAAGTCGAAT+TGG - chr2_4:9361256-9361275 Msa0313900:intron 45.0%
! GACTATGTGATTTTCTCCGG+TGG - chr2_4:9361286-9361305 Msa0313900:intron 45.0%
! TGATTTTCTCCGGTGGACAA+TGG - chr2_4:9361293-9361312 Msa0313900:intron 45.0%
TCGGAAAAACCATTGTCCAC+CGG + chr2_4:9361305-9361324 None:intergenic 45.0%
GCCAACCCTTTGAACAGATT+AGG + chr2_4:9361448-9361467 None:intergenic 45.0%
GAGAATGGCGAATGGAACAA+TGG - chr2_4:9361499-9361518 Msa0313900:CDS 45.0%
AATGGCGAATGGAACAATGG+TGG - chr2_4:9361502-9361521 Msa0313900:CDS 45.0%
! AAATGGGAGGTGCATCCATA+TGG - chr2_4:9361562-9361581 Msa0313900:CDS 45.0%
! GGGAAGAATGGTTCACGTTT+TGG - chr2_4:9361643-9361662 Msa0313900:CDS 45.0%
! GCAATGTTGATGAGACCTGA+TGG - chr2_4:9361685-9361704 Msa0313900:CDS 45.0%
TGTGTTCATTGGTGTATGCC+AGG - chr2_4:9361760-9361779 Msa0313900:CDS 45.0%
GTGTTCATTGGTGTATGCCA+GGG - chr2_4:9361761-9361780 Msa0313900:CDS 45.0%
TTAATAGTGTCAACAGGCCC+TGG + chr2_4:9361781-9361800 None:intergenic 45.0%
TCTAGGTCTAGATTGTGGGG+AGG - chr2_4:9359350-9359369 Msa0313900:intron 50.0%
! GGATCTAGAACTTCGGACAG+CGG - chr2_4:9360404-9360423 Msa0313900:intron 50.0%
CTCCTCAGTCTTTCGGACAT+TGG - chr2_4:9360442-9360461 Msa0313900:intron 50.0%
CACCAATGTCCGAAAGACTG+AGG + chr2_4:9360447-9360466 None:intergenic 50.0%
! GTCTTTCGGACATTGGTGTC+TGG - chr2_4:9360449-9360468 Msa0313900:intron 50.0%
! TTCGGACATTGGTGTCTGGT+CGG - chr2_4:9360453-9360472 Msa0313900:intron 50.0%
TACATATACACCCCCTCCTC+CGG + chr2_4:9360501-9360520 None:intergenic 50.0%
GGGTTAGGGCCTGAACAATT+AGG - chr2_4:9360614-9360633 Msa0313900:intron 50.0%
AGGGACCCCAAATTGTCTCT+TGG - chr2_4:9360650-9360669 Msa0313900:intron 50.0%
ATCAAGTCGAGACGGTCTCA+TGG + chr2_4:9360721-9360740 None:intergenic 50.0%
! ACCGTCTCGACTTGATCAGA+TGG - chr2_4:9360725-9360744 Msa0313900:intron 50.0%
TCAGGATGACCCGTTCGTTA+AGG - chr2_4:9360816-9360835 Msa0313900:intron 50.0%
TCAGCACGAGCAACCTGAAA+GGG + chr2_4:9361049-9361068 None:intergenic 50.0%
AGGGGACCATAGCATTGCAA+TGG + chr2_4:9361152-9361171 None:intergenic 50.0%
CGACTTGTCCAAGCTGTATC+TGG + chr2_4:9361253-9361272 None:intergenic 50.0%
! GCGAATGGAACAATGGTGGA+GGG - chr2_4:9361506-9361525 Msa0313900:CDS 50.0%
! ACTGAGGAGCTTGCTTCCAC+TGG + chr2_4:9360431-9360450 None:intergenic 55.0%
! TCGGACATTGGTGTCTGGTC+GGG - chr2_4:9360454-9360473 Msa0313900:intron 55.0%
TCTGGTCGGGTATGCGTCTT+TGG - chr2_4:9360467-9360486 Msa0313900:intron 55.0%
TGCGTCTTTGGTCCGAAGAC+CGG - chr2_4:9360479-9360498 Msa0313900:intron 55.0%
CTCAGCACGAGCAACCTGAA+AGG + chr2_4:9361050-9361069 None:intergenic 55.0%
!! CTTTCAGGTTGCTCGTGCTG+AGG - chr2_4:9361048-9361067 Msa0313900:intron 55.0%
GGCGAATGGAACAATGGTGG+AGG - chr2_4:9361505-9361524 Msa0313900:CDS 55.0%
AACTTCGGACAGCGGACCAG+TGG - chr2_4:9360412-9360431 Msa0313900:intron 60.0%
GTCTTTGGTCCGAAGACCGG+AGG - chr2_4:9360482-9360501 Msa0313900:intron 60.0%
TTTGGTCCGAAGACCGGAGG+AGG - chr2_4:9360485-9360504 Msa0313900:intron 60.0%
TTGGTCCGAAGACCGGAGGA+GGG - chr2_4:9360486-9360505 Msa0313900:intron 60.0%
TGGTCCGAAGACCGGAGGAG+GGG - chr2_4:9360487-9360506 Msa0313900:intron 65.0%
ACACCCCCTCCTCCGGTCTT+CGG + chr2_4:9360494-9360513 None:intergenic 65.0%
GGTCCGAAGACCGGAGGAGG+GGG - chr2_4:9360488-9360507 Msa0313900:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 9357905 9362060 9357905 ID=Msa0313900;Name=Msa0313900
chr2_4 mRNA 9357905 9362060 9357905 ID=Msa0313900-mRNA-1;Parent=Msa0313900;Name=Msa0313900-mRNA-1;_AED=0.01;_eAED=0.01;_QI=192|1|1|1|1|1|2|220|405
chr2_4 exon 9357905 9358910 9357905 ID=Msa0313900-mRNA-1:exon:3620;Parent=Msa0313900-mRNA-1
chr2_4 exon 9361437 9362060 9361437 ID=Msa0313900-mRNA-1:exon:3619;Parent=Msa0313900-mRNA-1
chr2_4 five_prime_UTR 9361869 9362060 9361869 ID=Msa0313900-mRNA-1:five_prime_utr;Parent=Msa0313900-mRNA-1
chr2_4 CDS 9361437 9361868 9361437 ID=Msa0313900-mRNA-1:cds;Parent=Msa0313900-mRNA-1
chr2_4 CDS 9358125 9358910 9358125 ID=Msa0313900-mRNA-1:cds;Parent=Msa0313900-mRNA-1
chr2_4 three_prime_UTR 9357905 9358124 9357905 ID=Msa0313900-mRNA-1:three_prime_utr;Parent=Msa0313900-mRNA-1
Gene Sequence

>Msa0313900

ATGGAGTCATGTGAGGCAACAGAGATTTTCAAACCTAAACGGATTTTCTTGTTCCCACTCACAGTACTCATTCTTGTGATACTTCTTCCTCTTCTCATTCACTTCAATCAAACATCATCAAAAGTACTATATCCAACAACAACTATTGTAGAACCTAGCTGTAACAACTTGTTCTTAGGAACATGGGTTCCTTATCTAAAACAACCTTATTACAATCAAACATGTCCTTTTATAACTGAAAAACAGAACTGTCTTATTCACGGAAGACCAGACAGTGATTTTCTTAAGTGGAGATGGAAACCTGATGATTGTGAACTTCCTTTGTTTGATGCAACTCAGTTTTTCAAGATTGTTAAGGGAAAGTCAATGGCTTTTGTCGGTGACTCTATTGGGAGAAATCAGATGGAATCATTACTATGTCTCTTGAATTCTGTTGCTCGTGCTGAGGATATTACAACTAAATATGTATCATCAATTGAAGACCTAACATATTTCAAATGGTGGTTTTATGCTGATTATAATTTTACCATTGCAATGCTATGGTCCCCTTTTCTAGTAAAATCCTCTAAATCTTACATCTACAACAGTTCTAATTTCTACAAACCCGAGAGTCTTTATCTAGATGAACCAGATACAGCTTGGACAAGTCGAATTGGAAATTTCGACTATGTGATTTTCTCCGGTGGACAATGGTTTTTCCGACCATTCACATTCTACGAAAATGGTACAATTGTTGGATGTCAAAAATGCAACAACTCAATAGAACTCAACTATTACGGATACAAGAAAGCGTATCGAACAGCTTTCAAAACTATTATGAATCCTAATCTGTTCAAAGGGTTGGCATTTTTGGTGACACATTCTCCAAATCATTTCGAGAATGGCGAATGGAACAATGGTGGAGGGTGTAATAGAACACAACCATTCAGTAATGAACATAAATGGGAGGTGCATCCATATGGTCTAGAGATTATACATCAAATACAATTGGATGAATTTAGTGCTGCAAAGAACAATACAGGGAAGAATGGTTCACGTTTTGGTTTGATTGATATAACAGATGCAATGTTGATGAGACCTGATGGACATCCTAACAAATATGGGCATGTGTCTGGTCAAAATGCAAGCATTAATGATTGTGTTCATTGGTGTATGCCAGGGCCTGTTGACACTATTAATGAGATTTTTCTCTATATGATCATGAGAATGGGATTGTGA

Protein sequence

>Msa0313900

MESCEATEIFKPKRIFLFPLTVLILVILLPLLIHFNQTSSKVLYPTTTIVEPSCNNLFLGTWVPYLKQPYYNQTCPFITEKQNCLIHGRPDSDFLKWRWKPDDCELPLFDATQFFKIVKGKSMAFVGDSIGRNQMESLLCLLNSVARAEDITTKYVSSIEDLTYFKWWFYADYNFTIAMLWSPFLVKSSKSYIYNSSNFYKPESLYLDEPDTAWTSRIGNFDYVIFSGGQWFFRPFTFYENGTIVGCQKCNNSIELNYYGYKKAYRTAFKTIMNPNLFKGLAFLVTHSPNHFENGEWNNGGGCNRTQPFSNEHKWEVHPYGLEIIHQIQLDEFSAAKNNTGKNGSRFGLIDITDAMLMRPDGHPNKYGHVSGQNASINDCVHWCMPGPVDTINEIFLYMIMRMGL*