Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313880 | XP_013462551.1 | 99.612 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313880 | sp|Q96452|1433C_SOYBN | 83.077 | 260 | 39 | 4 | 1 | 257 | 1 | 258 | 7.86e-154 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0175940 | Msa0313880 | 0.809915 | 1.494155e-50 | -8.615850e-47 |
| Msa0313880 | Msa1225660 | 0.843831 | 1.099958e-58 | -8.615850e-47 |
| Msa0313880 | Msa1321680 | 0.801280 | 9.698720e-49 | -8.615850e-47 |
| Msa0313880 | Msa1413180 | 0.857399 | 1.675866e-62 | -8.615850e-47 |
| Msa0313880 | Msa1429500 | 0.859223 | 4.798848e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313880 | MtrunA17_Chr2g0283791 | 99.612 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 0.0 | 527 |
| Msa0313880 | MtrunA17_Chr2g0325591 | 80.709 | 254 | 48 | 1 | 6 | 258 | 8 | 261 | 6.25e-156 | 434 |
| Msa0313880 | MtrunA17_Chr8g0379011 | 84.711 | 242 | 34 | 2 | 1 | 239 | 1 | 242 | 3.65e-153 | 426 |
| Msa0313880 | MtrunA17_Chr2g0316011 | 78.279 | 244 | 51 | 2 | 6 | 248 | 9 | 251 | 1.82e-144 | 405 |
| Msa0313880 | MtrunA17_Chr5g0418971 | 76.170 | 235 | 55 | 1 | 9 | 242 | 11 | 245 | 2.95e-135 | 381 |
| Msa0313880 | MtrunA17_Chr5g0426551 | 69.020 | 255 | 72 | 3 | 3 | 254 | 6 | 256 | 3.18e-126 | 358 |
| Msa0313880 | MtrunA17_Chr3g0132301 | 69.444 | 252 | 73 | 3 | 3 | 251 | 6 | 256 | 3.37e-124 | 353 |
| Msa0313880 | MtrunA17_Chr4g0043141 | 70.339 | 236 | 50 | 2 | 24 | 239 | 1 | 236 | 1.96e-120 | 343 |
| Msa0313880 | MtrunA17_Chr3g0133161 | 64.557 | 237 | 80 | 2 | 6 | 238 | 12 | 248 | 3.13e-109 | 315 |
| Msa0313880 | MtrunA17_Chr1g0164601 | 52.790 | 233 | 103 | 4 | 6 | 234 | 12 | 241 | 1.05e-73 | 225 |
| Msa0313880 | MtrunA17_Chr3g0082111 | 51.931 | 233 | 105 | 4 | 6 | 234 | 42 | 271 | 3.60e-71 | 219 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0313880 | AT2G42590.2 | 77.866 | 253 | 54 | 2 | 8 | 258 | 10 | 262 | 8.85e-146 | 409 |
| Msa0313880 | AT2G42590.3 | 77.165 | 254 | 55 | 2 | 8 | 258 | 10 | 263 | 2.55e-145 | 408 |
| Msa0313880 | AT2G42590.1 | 77.165 | 254 | 55 | 2 | 8 | 258 | 10 | 263 | 2.57e-145 | 407 |
| Msa0313880 | AT1G26480.1 | 72.868 | 258 | 63 | 2 | 6 | 256 | 11 | 268 | 2.81e-140 | 395 |
| Msa0313880 | AT1G34760.2 | 76.471 | 238 | 54 | 2 | 9 | 245 | 9 | 245 | 6.75e-133 | 375 |
| Msa0313880 | AT1G34760.1 | 76.471 | 238 | 54 | 2 | 9 | 245 | 9 | 245 | 9.76e-133 | 375 |
| Msa0313880 | AT1G22300.2 | 77.236 | 246 | 55 | 1 | 1 | 245 | 1 | 246 | 3.04e-132 | 374 |
| Msa0313880 | AT1G22300.1 | 77.236 | 246 | 55 | 1 | 1 | 245 | 1 | 246 | 3.58e-132 | 374 |
| Msa0313880 | AT1G22300.3 | 80.603 | 232 | 44 | 1 | 9 | 239 | 9 | 240 | 3.55e-131 | 371 |
| Msa0313880 | AT1G78300.1 | 68.110 | 254 | 78 | 2 | 1 | 251 | 1 | 254 | 4.55e-124 | 353 |
| Msa0313880 | AT1G35160.1 | 67.692 | 260 | 80 | 3 | 2 | 258 | 8 | 266 | 4.17e-123 | 351 |
| Msa0313880 | AT3G02520.1 | 67.557 | 262 | 81 | 3 | 1 | 258 | 1 | 262 | 1.82e-122 | 350 |
| Msa0313880 | AT3G02520.2 | 67.557 | 262 | 81 | 3 | 1 | 258 | 1 | 262 | 1.82e-122 | 350 |
| Msa0313880 | AT4G09000.1 | 67.857 | 252 | 73 | 3 | 1 | 244 | 1 | 252 | 5.52e-122 | 348 |
| Msa0313880 | AT5G38480.1 | 70.800 | 250 | 69 | 4 | 1 | 247 | 1 | 249 | 6.49e-122 | 348 |
| Msa0313880 | AT5G38480.3 | 70.968 | 248 | 68 | 4 | 1 | 245 | 1 | 247 | 3.07e-121 | 346 |
| Msa0313880 | AT5G38480.2 | 70.968 | 248 | 68 | 4 | 1 | 245 | 1 | 247 | 3.07e-121 | 346 |
| Msa0313880 | AT4G09000.2 | 69.959 | 243 | 65 | 3 | 1 | 235 | 1 | 243 | 2.21e-120 | 346 |
| Msa0313880 | AT1G35160.2 | 70.464 | 237 | 67 | 2 | 2 | 235 | 8 | 244 | 5.73e-120 | 344 |
| Msa0313880 | AT5G65430.1 | 66.949 | 236 | 74 | 2 | 7 | 238 | 9 | 244 | 9.07e-114 | 327 |
| Msa0313880 | AT5G10450.1 | 66.949 | 236 | 74 | 2 | 7 | 238 | 9 | 244 | 1.02e-113 | 327 |
| Msa0313880 | AT5G65430.2 | 67.382 | 233 | 72 | 2 | 7 | 235 | 9 | 241 | 4.98e-113 | 325 |
| Msa0313880 | AT5G10450.2 | 67.382 | 233 | 72 | 2 | 7 | 235 | 9 | 241 | 6.00e-113 | 325 |
| Msa0313880 | AT5G10450.3 | 67.382 | 233 | 72 | 2 | 7 | 235 | 9 | 241 | 1.47e-112 | 324 |
| Msa0313880 | AT5G65430.3 | 67.382 | 233 | 72 | 2 | 7 | 235 | 9 | 241 | 1.92e-112 | 324 |
| Msa0313880 | AT5G10450.4 | 67.382 | 233 | 72 | 2 | 7 | 235 | 9 | 241 | 2.38e-112 | 324 |
| Msa0313880 | AT5G16050.1 | 63.424 | 257 | 82 | 3 | 9 | 253 | 11 | 267 | 1.77e-111 | 322 |
| Msa0313880 | AT5G16050.2 | 63.424 | 257 | 82 | 3 | 9 | 253 | 11 | 267 | 1.77e-111 | 322 |
| Msa0313880 | AT1G78220.1 | 49.787 | 235 | 116 | 1 | 1 | 233 | 1 | 235 | 7.94e-77 | 233 |
| Msa0313880 | AT1G22290.1 | 48.598 | 214 | 85 | 6 | 1 | 208 | 1 | 195 | 1.93e-52 | 169 |
| Msa0313880 | AT1G22290.2 | 48.387 | 217 | 87 | 6 | 1 | 211 | 1 | 198 | 2.85e-52 | 169 |
| Msa0313880 | AT2G10450.1 | 60.465 | 43 | 17 | 0 | 202 | 244 | 17 | 59 | 7.62e-11 | 57.8 |
Find 91 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTATTTCTTTCCTATTTA+TGG | 0.092582 | 2_4:+9319039 | Msa0313880:five_prime_UTR |
| AAATAAGCTATTAAATAAAA+AGG | 0.201590 | 2_4:-9319080 | None:intergenic |
| AGACTCTGTTGGTCAATTTC+AGG | 0.210851 | 2_4:-9318970 | None:intergenic |
| GATTGAATTGAATTTGAAAA+AGG | 0.215402 | 2_4:-9319196 | None:intergenic |
| TTGAAAATGCGTAACGGTTT+TGG | 0.252253 | 2_4:-9319311 | None:intergenic |
| CATCTTATTCCGAATTCTTC+TGG | 0.256329 | 2_4:+9319751 | Msa0313880:CDS |
| GATGACTGTAATAATTTAAT+TGG | 0.256916 | 2_4:+9322910 | Msa0313880:three_prime_UTR |
| TTGGAGCACGTAGGGCTTCT+TGG | 0.262919 | 2_4:+9319590 | Msa0313880:CDS |
| AGTCACTTTAGTCCATAAAT+AGG | 0.266250 | 2_4:-9319051 | None:intergenic |
| TAATATTAGATATACCTTTC+AGG | 0.295110 | 2_4:-9320787 | None:intergenic |
| TTCGGCTTGTTCAGCGAGTT+TGG | 0.337013 | 2_4:-9319384 | None:intergenic |
| TTTGCAATTTCTCTGCATTA+GGG | 0.340450 | 2_4:+9319008 | Msa0313880:five_prime_UTR |
| AGGCGATTATTATCGTTATC+TGG | 0.341220 | 2_4:+9319914 | Msa0313880:CDS |
| TAACGCAACATTGGAATTGC+TGG | 0.345151 | 2_4:-9322850 | None:intergenic |
| GAAACTCAATGTTGAATTAA+CGG | 0.348481 | 2_4:+9319525 | Msa0313880:CDS |
| TCAATCCTTGAAAGCGTATC+AGG | 0.360445 | 2_4:+9319977 | Msa0313880:CDS |
| GTTGCTTACAAGAATGTTGT+TGG | 0.372901 | 2_4:+9319571 | Msa0313880:CDS |
| TGGCGGTGTAGACGAAGTTT+TGG | 0.385645 | 2_4:-9319364 | None:intergenic |
| ACTAGTCTCTATGCAAGTTC+TGG | 0.395577 | 2_4:+9322700 | Msa0313880:three_prime_UTR |
| ACATCCCGTCAGACTGGGTT+TGG | 0.415057 | 2_4:+9320723 | Msa0313880:CDS |
| GGCTTGTCACCTTGCCAAGC+AGG | 0.427559 | 2_4:+9320888 | Msa0313880:CDS |
| TTAGATTCACCAGAAGAATT+CGG | 0.439019 | 2_4:-9319760 | None:intergenic |
| GACCAACAGAGTCTACATTC+AGG | 0.440512 | 2_4:+9318979 | Msa0313880:five_prime_UTR |
| TCCCACACATCCCGTCAGAC+TGG | 0.445008 | 2_4:+9320717 | Msa0313880:CDS |
| GAATACCTGATACGCTTTCA+AGG | 0.450333 | 2_4:-9319982 | None:intergenic |
| GACTCTGTTGGTCAATTTCA+GGG | 0.457499 | 2_4:-9318969 | None:intergenic |
| TGTCAGAAGTCCACAATGTC+AGG | 0.458840 | 2_4:-9320999 | None:intergenic |
| CTAGGAAAATTATAAACCCT+GGG | 0.458990 | 2_4:+9322806 | Msa0313880:three_prime_UTR |
| TGCTACATCAAATGCCTGCT+TGG | 0.461423 | 2_4:-9320902 | None:intergenic |
| ATGAAGAAGAAGGGAGAATG+AGG | 0.462657 | 2_4:-9319277 | None:intergenic |
| GATGTTACCTTCGTAGCGTT+CGG | 0.465455 | 2_4:-9319402 | None:intergenic |
| CAAATCTCAACGATCTTCCA+TGG | 0.468609 | 2_4:+9319331 | Msa0313880:exon |
| ATCTCCTGCAGGAGGAGCTC+GGG | 0.473781 | 2_4:-9322548 | None:intergenic |
| CATTGTCAAATGAAAGCCCC+AGG | 0.479493 | 2_4:-9322823 | None:intergenic |
| TTTGCATGCAGTAAAGTGAC+AGG | 0.485969 | 2_4:+9322644 | Msa0313880:intron |
| CACTGATCATGCAGCTTCTG+AGG | 0.487882 | 2_4:+9320971 | Msa0313880:CDS |
| ACCTCTGCATTATCTCCTGC+AGG | 0.493629 | 2_4:-9322559 | None:intergenic |
| ATCAATATCGACTCAAACAA+AGG | 0.497937 | 2_4:+9319216 | Msa0313880:five_prime_UTR |
| TTTAACAGTCGAGGAACAAA+AGG | 0.499669 | 2_4:+9322516 | Msa0313880:intron |
| CTCAGCCTCTGCAGCAGTGG+AGG | 0.505948 | 2_4:-9320689 | None:intergenic |
| TATCTCCTGCAGGAGGAGCT+CGG | 0.507940 | 2_4:-9322549 | None:intergenic |
| TGATGTAGCAATCGCTGAGT+TGG | 0.508758 | 2_4:+9320915 | Msa0313880:CDS |
| GAATGTTGTTGGAGCACGTA+GGG | 0.515655 | 2_4:+9319582 | Msa0313880:CDS |
| TCTAGGAAAATTATAAACCC+TGG | 0.515873 | 2_4:+9322805 | Msa0313880:three_prime_UTR |
| GGAAGCCTCCACTGCTGCAG+AGG | 0.516556 | 2_4:+9320684 | Msa0313880:intron |
| TAGCACATCAATCACGCAAA+AGG | 0.518844 | 2_4:+9319155 | Msa0313880:five_prime_UTR |
| ACCAACAGAGTCTACATTCA+GGG | 0.519786 | 2_4:+9318980 | Msa0313880:five_prime_UTR |
| TTGAATTAACGGTTGAAGAG+AGG | 0.519994 | 2_4:+9319536 | Msa0313880:CDS |
| TCTGCCCGAGCTCCTCCTGC+AGG | 0.522343 | 2_4:+9322544 | Msa0313880:CDS |
| AGCAGCGAGAAGAAGCGAAA+GGG | 0.529966 | 2_4:+9319632 | Msa0313880:CDS |
| AAAAGCATCTAACGCAACAT+TGG | 0.535046 | 2_4:-9322859 | None:intergenic |
| AAAGCCAAACCCAGTCTGAC+GGG | 0.541921 | 2_4:-9320727 | None:intergenic |
| AGTCTCTATGCAAGTTCTGG+TGG | 0.543018 | 2_4:+9322703 | Msa0313880:three_prime_UTR |
| CCCACACATCCCGTCAGACT+GGG | 0.546107 | 2_4:+9320718 | Msa0313880:CDS |
| ACCCAGTCTGACGGGATGTG+TGG | 0.546504 | 2_4:-9320719 | None:intergenic |
| GAGCACGTAGGGCTTCTTGG+AGG | 0.551251 | 2_4:+9319593 | Msa0313880:CDS |
| GGAGTGATGTGAATGTCAAT+CGG | 0.556097 | 2_4:+9319653 | Msa0313880:CDS |
| TAACTCAGCCTCTGCAGCAG+TGG | 0.556950 | 2_4:-9320692 | None:intergenic |
| CCCAGTCTGACGGGATGTGT+GGG | 0.556979 | 2_4:-9320718 | None:intergenic |
| CATCAAATGCCTGCTTGGCA+AGG | 0.559534 | 2_4:-9320897 | None:intergenic |
| TGTGAATGTCAATCGGATCA+AGG | 0.560657 | 2_4:+9319660 | Msa0313880:CDS |
| TGAAGAAGAAGGGAGAATGA+GGG | 0.564163 | 2_4:-9319276 | None:intergenic |
| TGAACAGTAAGTCTGTCTCT+AGG | 0.566393 | 2_4:+9322788 | Msa0313880:three_prime_UTR |
| CAAAGCCAAACCCAGTCTGA+CGG | 0.571522 | 2_4:-9320728 | None:intergenic |
| GTTTGGGTGATGAAGAAGAA+GGG | 0.573430 | 2_4:-9319286 | None:intergenic |
| TCAATCGGATCAAGGAGTAT+CGG | 0.575135 | 2_4:+9319668 | Msa0313880:CDS |
| AAATCTTGAACTCTCCTGAA+AGG | 0.575438 | 2_4:+9320773 | Msa0313880:CDS |
| GGCTTGTTCAGCGAGTTTGG+CGG | 0.577446 | 2_4:-9319381 | None:intergenic |
| GAGCGGTGATGAGAGGAAAG+AGG | 0.579801 | 2_4:+9319947 | Msa0313880:CDS |
| AGTTTAAGAGCGGTGATGAG+AGG | 0.596754 | 2_4:+9319940 | Msa0313880:CDS |
| ACTGATCATGCAGCTTCTGA+GGG | 0.597947 | 2_4:+9320972 | Msa0313880:CDS |
| AATGATGAAATCATCTAAGG+TGG | 0.601059 | 2_4:-9322969 | None:intergenic |
| ATTCCTACAACTAGAAAACA+TGG | 0.606234 | 2_4:-9322736 | None:intergenic |
| ACTTCTGACATTCCTGAGGA+AGG | 0.613131 | 2_4:+9321012 | Msa0313880:CDS |
| TCCCTGAATGTAGACTCTGT+TGG | 0.618734 | 2_4:-9318981 | None:intergenic |
| GAGCAGCGAGAAGAAGCGAA+AGG | 0.628936 | 2_4:+9319631 | Msa0313880:CDS |
| GGTTTGGGTGATGAAGAAGA+AGG | 0.633297 | 2_4:-9319287 | None:intergenic |
| TGAGGGACAACCTGACATTG+TGG | 0.634685 | 2_4:+9320989 | Msa0313880:CDS |
| GTGGACTTCTGACATTCCTG+AGG | 0.637259 | 2_4:+9321008 | Msa0313880:CDS |
| TCTGACATTCCTGAGGAAGG+AGG | 0.638467 | 2_4:+9321015 | Msa0313880:CDS |
| ATTGTCAAATGAAAGCCCCA+GGG | 0.641003 | 2_4:-9322822 | None:intergenic |
| GAACAAGCCGAACGCTACGA+AGG | 0.646756 | 2_4:+9319395 | Msa0313880:CDS |
| TGAGATTTGAAAATGCGTAA+CGG | 0.658721 | 2_4:-9319317 | None:intergenic |
| AGTCTGACGGGATGTGTGGG+AGG | 0.660311 | 2_4:-9320715 | None:intergenic |
| TGAGTTGGATTCTCTCAATG+AGG | 0.669995 | 2_4:+9320930 | Msa0313880:CDS |
| TATCTGGCTGAGTTTAAGAG+CGG | 0.685496 | 2_4:+9319930 | Msa0313880:CDS |
| TCTGCATTATCTCCTGCAGG+AGG | 0.689694 | 2_4:-9322556 | None:intergenic |
| TCCTGCAGGAGATAATGCAG+AGG | 0.691697 | 2_4:+9322558 | Msa0313880:CDS |
| GTTCAATTAAAACATCCTAG+TGG | 0.694491 | 2_4:-9322770 | None:intergenic |
| TAGGAAAATTATAAACCCTG+GGG | 0.717526 | 2_4:+9322807 | Msa0313880:three_prime_UTR |
| AGAATGTTGTTGGAGCACGT+AGG | 0.773880 | 2_4:+9319581 | Msa0313880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGCTATTAAATAAAAA+GGG | - | chr2_4:9319082-9319101 | None:intergenic | 10.0% |
| !! | AAATAAGCTATTAAATAAAA+AGG | - | chr2_4:9319083-9319102 | None:intergenic | 10.0% |
| !! | ATAAGCTATTAAATAAAAAG+GGG | - | chr2_4:9319081-9319100 | None:intergenic | 15.0% |
| !!! | TATCGAAATTGAATTTTATA+AGG | - | chr2_4:9319132-9319151 | None:intergenic | 15.0% |
| !!! | TTATAAAAGGTGTTTTTATT+GGG | + | chr2_4:9320274-9320293 | Msa0313880:intron | 15.0% |
| !!! | TTTTATAGTAAACAATCATT+AGG | - | chr2_4:9320374-9320393 | None:intergenic | 15.0% |
| !!! | ATATAATGACTCAATTTTAA+TGG | - | chr2_4:9321666-9321685 | None:intergenic | 15.0% |
| !! | TAAAATTGAGTCATTATATA+TGG | + | chr2_4:9321667-9321686 | Msa0313880:intron | 15.0% |
| !! | AAAATTGAGTCATTATATAT+GGG | + | chr2_4:9321668-9321687 | Msa0313880:intron | 15.0% |
| !!! | ATATATGGGAAATAAAATTT+TGG | + | chr2_4:9321682-9321701 | Msa0313880:intron | 15.0% |
| !!! | TATATGGGAAATAAAATTTT+GGG | + | chr2_4:9321683-9321702 | Msa0313880:intron | 15.0% |
| !!! | AATATATTTTGGACATATAT+TGG | - | chr2_4:9322185-9322204 | None:intergenic | 15.0% |
| !! | GTCCAAAATATATTAAATAT+CGG | + | chr2_4:9322191-9322210 | Msa0313880:intron | 15.0% |
| !! | GATTGAATTGAATTTGAAAA+AGG | - | chr2_4:9319199-9319218 | None:intergenic | 20.0% |
| !!! | CAAAATGTAGGTTTATTTTT+TGG | + | chr2_4:9319795-9319814 | Msa0313880:intron | 20.0% |
| !! | TATTGCCTAAAACTTATAAA+AGG | + | chr2_4:9320261-9320280 | Msa0313880:intron | 20.0% |
| !!! | AAACACCTTTTATAAGTTTT+AGG | - | chr2_4:9320269-9320288 | None:intergenic | 20.0% |
| !!! | CTTATAAAAGGTGTTTTTAT+TGG | + | chr2_4:9320273-9320292 | Msa0313880:intron | 20.0% |
| !! | AAAAAAATTCTTGAGTGAAT+TGG | - | chr2_4:9320610-9320629 | None:intergenic | 20.0% |
| !! | TAATATTAGATATACCTTTC+AGG | - | chr2_4:9320790-9320809 | None:intergenic | 20.0% |
| !!! | AATAAAAAACAAAGCATTTC+AGG | - | chr2_4:9321097-9321116 | None:intergenic | 20.0% |
| !! | TGAAGTTATGTAAATTCATA+AGG | - | chr2_4:9321357-9321376 | None:intergenic | 20.0% |
| !! | GTTAAAATTGAGTCATTATA+GGG | + | chr2_4:9321928-9321947 | Msa0313880:intron | 20.0% |
| !! | TTAAAATTGAGTCATTATAG+GGG | + | chr2_4:9321929-9321948 | Msa0313880:intron | 20.0% |
| !! | AAATAATATGCATACGAATT+AGG | - | chr2_4:9322427-9322446 | None:intergenic | 20.0% |
| !! | TGCAAAATATAACTTTGTTA+AGG | - | chr2_4:9322630-9322649 | None:intergenic | 20.0% |
| !! | GATGACTGTAATAATTTAAT+TGG | + | chr2_4:9322910-9322929 | Msa0313880:three_prime_UTR | 20.0% |
| ! | GAGTATTTCTTTCCTATTTA+TGG | + | chr2_4:9319039-9319058 | Msa0313880:five_prime_UTR | 25.0% |
| !!! | TGCTTTGTTTCTTTTAGAAA+TGG | + | chr2_4:9319480-9319499 | Msa0313880:intron | 25.0% |
| ! | GAAACTCAATGTTGAATTAA+CGG | + | chr2_4:9319525-9319544 | Msa0313880:CDS | 25.0% |
| ! | TGTGTTCTATTACAAAATGT+AGG | + | chr2_4:9319783-9319802 | Msa0313880:intron | 25.0% |
| !! | ATTCCATCTAATCTTGTTAT+AGG | + | chr2_4:9320225-9320244 | Msa0313880:intron | 25.0% |
| ! | AAACCTATAACAAGATTAGA+TGG | - | chr2_4:9320231-9320250 | None:intergenic | 25.0% |
| ! | AACTGTTATATACACTTCAT+AGG | + | chr2_4:9320342-9320361 | Msa0313880:intron | 25.0% |
| ! | ACTGTTATATACACTTCATA+GGG | + | chr2_4:9320343-9320362 | Msa0313880:intron | 25.0% |
| ! | TCATACATGAAAATAATTGC+AGG | + | chr2_4:9320663-9320682 | Msa0313880:intron | 25.0% |
| !! | TAGAGATTCCAACTAATTTT+TGG | + | chr2_4:9321246-9321265 | Msa0313880:intron | 25.0% |
| ! | TGAATTATGTTCATGTTTCA+TGG | - | chr2_4:9321311-9321330 | None:intergenic | 25.0% |
| !!! | ATTTTTCAACAAAAACTGTC+AGG | - | chr2_4:9321399-9321418 | None:intergenic | 25.0% |
| ! | CGTTAAAATTGAGTCATTAT+AGG | + | chr2_4:9321927-9321946 | Msa0313880:intron | 25.0% |
| !! | GGCCGATATTTAATATATTT+TGG | - | chr2_4:9322196-9322215 | None:intergenic | 25.0% |
| !!! | AGAATCATAAACTTTTGAGT+TGG | - | chr2_4:9322224-9322243 | None:intergenic | 25.0% |
| ! | ATTCAGGAAAATTGATTGAA+GGG | - | chr2_4:9322486-9322505 | None:intergenic | 25.0% |
| ! | AATTCAGGAAAATTGATTGA+AGG | - | chr2_4:9322487-9322506 | None:intergenic | 25.0% |
| !! | TCCATGAATCTTATGTTTTT+CGG | - | chr2_4:9322892-9322911 | None:intergenic | 25.0% |
| ! | TTTTGCAATTTCTCTGCATT+AGG | + | chr2_4:9319007-9319026 | Msa0313880:five_prime_UTR | 30.0% |
| TTTGCAATTTCTCTGCATTA+GGG | + | chr2_4:9319008-9319027 | Msa0313880:five_prime_UTR | 30.0% | |
| ! | AGTCACTTTAGTCCATAAAT+AGG | - | chr2_4:9319054-9319073 | None:intergenic | 30.0% |
| !! | ATCAATATCGACTCAAACAA+AGG | + | chr2_4:9319216-9319235 | Msa0313880:five_prime_UTR | 30.0% |
| TGAGATTTGAAAATGCGTAA+CGG | - | chr2_4:9319320-9319339 | None:intergenic | 30.0% | |
| GAAAAAAGTTGAATCAGAGT+TGG | + | chr2_4:9319690-9319709 | Msa0313880:CDS | 30.0% | |
| TTAGATTCACCAGAAGAATT+CGG | - | chr2_4:9319763-9319782 | None:intergenic | 30.0% | |
| ! | TTTTGCATTCGAATTCATTG+TGG | + | chr2_4:9320317-9320336 | Msa0313880:intron | 30.0% |
| CTGTTATATACACTTCATAG+GGG | + | chr2_4:9320344-9320363 | Msa0313880:intron | 30.0% | |
| TTCATCTTCAAATCAATCAC+AGG | - | chr2_4:9320402-9320421 | None:intergenic | 30.0% | |
| !! | ATTGATTTGAAGATGAAGTG+AGG | + | chr2_4:9320405-9320424 | Msa0313880:intron | 30.0% |
| !!! | TGATCTATGATTGGTTTTCA+TGG | + | chr2_4:9320498-9320517 | Msa0313880:intron | 30.0% |
| !!! | GATGGTTTTTCAAGTAAAAG+AGG | - | chr2_4:9320529-9320548 | None:intergenic | 30.0% |
| !!! | ACTCAAGAATTTTTTTGCAC+TGG | + | chr2_4:9320614-9320633 | Msa0313880:intron | 30.0% |
| ! | ACTGTTTTCTTTCGTATTTC+AGG | + | chr2_4:9320866-9320885 | Msa0313880:intron | 30.0% |
| ! | CTGTTTTCTTTCGTATTTCA+GGG | + | chr2_4:9320867-9320886 | Msa0313880:intron | 30.0% |
| TATGCTAATTTGATATGCAG+AGG | + | chr2_4:9321059-9321078 | Msa0313880:intron | 30.0% | |
| ACTAACAACTAACAATCACA+TGG | - | chr2_4:9321198-9321217 | None:intergenic | 30.0% | |
| CTTCTGATCCAAAAATTAGT+TGG | - | chr2_4:9321257-9321276 | None:intergenic | 30.0% | |
| ! | AAAACAAGATCTAGTTCCAT+TGG | - | chr2_4:9321285-9321304 | None:intergenic | 30.0% |
| !! | TCAATTTTAACGACACTTCT+GGG | - | chr2_4:9321919-9321938 | None:intergenic | 30.0% |
| ! | AGTCATTATAGGGGAAATTT+TGG | + | chr2_4:9321938-9321957 | Msa0313880:intron | 30.0% |
| ! | GTCATTATAGGGGAAATTTT+GGG | + | chr2_4:9321939-9321958 | Msa0313880:intron | 30.0% |
| AATAAACCTACTTTCCCTAT+TGG | + | chr2_4:9321974-9321993 | Msa0313880:intron | 30.0% | |
| TATGAATCACAGTTCCAATA+GGG | - | chr2_4:9321991-9322010 | None:intergenic | 30.0% | |
| TTATGAATCACAGTTCCAAT+AGG | - | chr2_4:9321992-9322011 | None:intergenic | 30.0% | |
| AAGTAACAATGGCAAAATTG+AGG | - | chr2_4:9322379-9322398 | None:intergenic | 30.0% | |
| GTTTGAAAGCAAAGTAACAA+TGG | - | chr2_4:9322390-9322409 | None:intergenic | 30.0% | |
| GTTAAAAAGGAAGGAAATTC+AGG | - | chr2_4:9322502-9322521 | None:intergenic | 30.0% | |
| ! | TAAAGTGACAGGTTTTACTA+GGG | + | chr2_4:9322655-9322674 | Msa0313880:exon | 30.0% |
| !!! | TTTCCATGTTTTCTAGTTGT+AGG | + | chr2_4:9322733-9322752 | Msa0313880:three_prime_UTR | 30.0% |
| ATTCCTACAACTAGAAAACA+TGG | - | chr2_4:9322739-9322758 | None:intergenic | 30.0% | |
| GTTCAATTAAAACATCCTAG+TGG | - | chr2_4:9322773-9322792 | None:intergenic | 30.0% | |
| TCTAGGAAAATTATAAACCC+TGG | + | chr2_4:9322805-9322824 | Msa0313880:three_prime_UTR | 30.0% | |
| CTAGGAAAATTATAAACCCT+GGG | + | chr2_4:9322806-9322825 | Msa0313880:three_prime_UTR | 30.0% | |
| TAGGAAAATTATAAACCCTG+GGG | + | chr2_4:9322807-9322826 | Msa0313880:three_prime_UTR | 30.0% | |
| ! | CCATGAATCTTATGTTTTTC+GGG | - | chr2_4:9322891-9322910 | None:intergenic | 30.0% |
| ! | TTGAAAATGCGTAACGGTTT+TGG | - | chr2_4:9319314-9319333 | None:intergenic | 35.0% |
| !!! | TGTAGACGAAGTTTTGGTTA+GGG | - | chr2_4:9319361-9319380 | None:intergenic | 35.0% |
| TTGAATTAACGGTTGAAGAG+AGG | + | chr2_4:9319536-9319555 | Msa0313880:CDS | 35.0% | |
| GTTGCTTACAAGAATGTTGT+TGG | + | chr2_4:9319571-9319590 | Msa0313880:CDS | 35.0% | |
| CATCTTATTCCGAATTCTTC+TGG | + | chr2_4:9319751-9319770 | Msa0313880:CDS | 35.0% | |
| ! | TTTTTGCTCGCGATGAAATT+TGG | + | chr2_4:9319844-9319863 | Msa0313880:intron | 35.0% |
| TTCGTGTTTGATTGTGTTGT+AGG | + | chr2_4:9319889-9319908 | Msa0313880:intron | 35.0% | |
| GTTTGATTGTGTTGTAGGAA+AGG | + | chr2_4:9319894-9319913 | Msa0313880:intron | 35.0% | |
| AGGCGATTATTATCGTTATC+TGG | + | chr2_4:9319914-9319933 | Msa0313880:CDS | 35.0% | |
| CAGGTATTCTACACAATTGT+CGG | + | chr2_4:9319996-9320015 | Msa0313880:intron | 35.0% | |
| AGGTATTCTACACAATTGTC+GGG | + | chr2_4:9319997-9320016 | Msa0313880:intron | 35.0% | |
| CTTGAAAGCTTAATCATGCT+TGG | + | chr2_4:9320070-9320089 | Msa0313880:intron | 35.0% | |
| ACCAATCATAGATCAGTCTT+GGG | - | chr2_4:9320493-9320512 | None:intergenic | 35.0% | |
| AACCAATCATAGATCAGTCT+TGG | - | chr2_4:9320494-9320513 | None:intergenic | 35.0% | |
| AAAAACCATCATCGTGTCTA+GGG | + | chr2_4:9320539-9320558 | Msa0313880:intron | 35.0% | |
| AAATCTTGAACTCTCCTGAA+AGG | + | chr2_4:9320773-9320792 | Msa0313880:CDS | 35.0% | |
| ! | GATATTTTCCTTAGTCAGAC+AGG | + | chr2_4:9321127-9321146 | Msa0313880:intron | 35.0% |
| AGTTGGAATCTCTATCAAGT+GGG | - | chr2_4:9321240-9321259 | None:intergenic | 35.0% | |
| TAGTTGGAATCTCTATCAAG+TGG | - | chr2_4:9321241-9321260 | None:intergenic | 35.0% | |
| !!! | GAGTTTTTAGAACTACTTGC+AGG | - | chr2_4:9321434-9321453 | None:intergenic | 35.0% |
| TGTGTCTATGTTTCCAATTG+CGG | + | chr2_4:9321467-9321486 | Msa0313880:intron | 35.0% | |
| !! | TCAATTTTAATGGTGCTCCT+GGG | - | chr2_4:9321656-9321675 | None:intergenic | 35.0% |
| GATTCCAATTCAAGACAAGA+AGG | - | chr2_4:9321842-9321861 | None:intergenic | 35.0% | |
| TCTTGTCTTGAATTGGAATC+TGG | + | chr2_4:9321842-9321861 | Msa0313880:intron | 35.0% | |
| !! | CTCAATTTTAACGACACTTC+TGG | - | chr2_4:9321920-9321939 | None:intergenic | 35.0% |
| TTAGAATGAGGGAAAGTTGA+GGG | - | chr2_4:9322079-9322098 | None:intergenic | 35.0% | |
| ATTAGAATGAGGGAAAGTTG+AGG | - | chr2_4:9322080-9322099 | None:intergenic | 35.0% | |
| TGTCACAGCTATTAGAATGA+GGG | - | chr2_4:9322090-9322109 | None:intergenic | 35.0% | |
| TTGTCACAGCTATTAGAATG+AGG | - | chr2_4:9322091-9322110 | None:intergenic | 35.0% | |
| !!! | TAAACTTTTGAGTTGGTGCT+TGG | - | chr2_4:9322217-9322236 | None:intergenic | 35.0% |
| TCATCATTAACTTCCAGCAT+TGG | + | chr2_4:9322258-9322277 | Msa0313880:intron | 35.0% | |
| CATCATTAACTTCCAGCATT+GGG | + | chr2_4:9322259-9322278 | Msa0313880:intron | 35.0% | |
| TGTCTTTAGTGTTTCCTTTC+TGG | + | chr2_4:9322301-9322320 | Msa0313880:intron | 35.0% | |
| ! | CGAGTTTAAAACAACCAGAA+AGG | - | chr2_4:9322318-9322337 | None:intergenic | 35.0% |
| GAAAATTGATTGAAGGGCAA+AGG | - | chr2_4:9322480-9322499 | None:intergenic | 35.0% | |
| TTGTTCCTCGACTGTTAAAA+AGG | - | chr2_4:9322515-9322534 | None:intergenic | 35.0% | |
| TTTAACAGTCGAGGAACAAA+AGG | + | chr2_4:9322516-9322535 | Msa0313880:intron | 35.0% | |
| ! | GTAAAGTGACAGGTTTTACT+AGG | + | chr2_4:9322654-9322673 | Msa0313880:intron | 35.0% |
| ! | AAAGTGACAGGTTTTACTAG+GGG | + | chr2_4:9322656-9322675 | Msa0313880:exon | 35.0% |
| !!! | GAATTTTAAAGCTCACCACT+AGG | + | chr2_4:9322755-9322774 | Msa0313880:three_prime_UTR | 35.0% |
| !! | AAAAGCATCTAACGCAACAT+TGG | - | chr2_4:9322862-9322881 | None:intergenic | 35.0% |
| CCCGAAAAACATAAGATTCA+TGG | + | chr2_4:9322888-9322907 | Msa0313880:three_prime_UTR | 35.0% | |
| GACTCTGTTGGTCAATTTCA+GGG | - | chr2_4:9318972-9318991 | None:intergenic | 40.0% | |
| AGACTCTGTTGGTCAATTTC+AGG | - | chr2_4:9318973-9318992 | None:intergenic | 40.0% | |
| ACCAACAGAGTCTACATTCA+GGG | + | chr2_4:9318980-9318999 | Msa0313880:five_prime_UTR | 40.0% | |
| TAGCACATCAATCACGCAAA+AGG | + | chr2_4:9319155-9319174 | Msa0313880:five_prime_UTR | 40.0% | |
| TGAAGAAGAAGGGAGAATGA+GGG | - | chr2_4:9319279-9319298 | None:intergenic | 40.0% | |
| ATGAAGAAGAAGGGAGAATG+AGG | - | chr2_4:9319280-9319299 | None:intergenic | 40.0% | |
| GTTTGGGTGATGAAGAAGAA+GGG | - | chr2_4:9319289-9319308 | None:intergenic | 40.0% | |
| !! | AAAATGCGTAACGGTTTTGG+TGG | - | chr2_4:9319311-9319330 | None:intergenic | 40.0% |
| CAAATCTCAACGATCTTCCA+TGG | + | chr2_4:9319331-9319350 | Msa0313880:exon | 40.0% | |
| !!! | GTAGACGAAGTTTTGGTTAG+GGG | - | chr2_4:9319360-9319379 | None:intergenic | 40.0% |
| !!! | GTGTAGACGAAGTTTTGGTT+AGG | - | chr2_4:9319362-9319381 | None:intergenic | 40.0% |
| GGAGTGATGTGAATGTCAAT+CGG | + | chr2_4:9319653-9319672 | Msa0313880:CDS | 40.0% | |
| TGTGAATGTCAATCGGATCA+AGG | + | chr2_4:9319660-9319679 | Msa0313880:CDS | 40.0% | |
| ! | TCAATCGGATCAAGGAGTAT+CGG | + | chr2_4:9319668-9319687 | Msa0313880:CDS | 40.0% |
| TATCTGGCTGAGTTTAAGAG+CGG | + | chr2_4:9319930-9319949 | Msa0313880:CDS | 40.0% | |
| ! | TCAATCCTTGAAAGCGTATC+AGG | + | chr2_4:9319977-9319996 | Msa0313880:CDS | 40.0% |
| GAATACCTGATACGCTTTCA+AGG | - | chr2_4:9319985-9320004 | None:intergenic | 40.0% | |
| GGTATTCTACACAATTGTCG+GGG | + | chr2_4:9319998-9320017 | Msa0313880:intron | 40.0% | |
| TCTTCAATAAAGTAGTCCGC+AGG | + | chr2_4:9320156-9320175 | Msa0313880:intron | 40.0% | |
| ! | TGAAGTGAGGTGTTATGTGT+TGG | + | chr2_4:9320418-9320437 | Msa0313880:intron | 40.0% |
| TCCCAAGACTGATCTATGAT+TGG | + | chr2_4:9320489-9320508 | Msa0313880:intron | 40.0% | |
| GAAAAACCATCATCGTGTCT+AGG | + | chr2_4:9320538-9320557 | Msa0313880:intron | 40.0% | |
| AAAACCATCATCGTGTCTAG+GGG | + | chr2_4:9320540-9320559 | Msa0313880:intron | 40.0% | |
| ! | TGAGTTGGATTCTCTCAATG+AGG | + | chr2_4:9320930-9320949 | Msa0313880:CDS | 40.0% |
| ! | ATTTTCCTTAGTCAGACAGG+AGG | + | chr2_4:9321130-9321149 | Msa0313880:intron | 40.0% |
| TGGATCAGAAGAAGATCCAA+TGG | + | chr2_4:9321266-9321285 | Msa0313880:intron | 40.0% | |
| ! | TTCACAATCCTCTAGAAAGC+AGG | + | chr2_4:9321373-9321392 | Msa0313880:intron | 40.0% |
| TGTTGTGGTCTAAAAAACCC+AGG | + | chr2_4:9321636-9321655 | Msa0313880:intron | 40.0% | |
| !! | CTCAATTTTAATGGTGCTCC+TGG | - | chr2_4:9321657-9321676 | None:intergenic | 40.0% |
| TCCAATTCAAGACAAGAAGG+CGG | - | chr2_4:9321839-9321858 | None:intergenic | 40.0% | |
| GGTTATCTCAGCCAAAACAT+TGG | - | chr2_4:9321898-9321917 | None:intergenic | 40.0% | |
| ACAGTTCCAATAGGGAAAGT+AGG | - | chr2_4:9321983-9322002 | None:intergenic | 40.0% | |
| TCTCAACCATCATCAATCAG+TGG | + | chr2_4:9322122-9322141 | Msa0313880:intron | 40.0% | |
| ! | TCATCTCTCAATCCCAGTTT+TGG | + | chr2_4:9322146-9322165 | Msa0313880:intron | 40.0% |
| ! | CATCTCTCAATCCCAGTTTT+GGG | + | chr2_4:9322147-9322166 | Msa0313880:intron | 40.0% |
| ! | ATCTCTCAATCCCAGTTTTG+GGG | + | chr2_4:9322148-9322167 | Msa0313880:intron | 40.0% |
| ! | ATACGAATTAGGAAGTGCGA+AGG | - | chr2_4:9322416-9322435 | None:intergenic | 40.0% |
| AATTGATTGAAGGGCAAAGG+CGG | - | chr2_4:9322477-9322496 | None:intergenic | 40.0% | |
| ! | TCCTTCCTTTTTAACAGTCG+AGG | + | chr2_4:9322507-9322526 | Msa0313880:intron | 40.0% |
| TCCTCGACTGTTAAAAAGGA+AGG | - | chr2_4:9322511-9322530 | None:intergenic | 40.0% | |
| TTACCTGAGAGATTGTCTTC+TGG | + | chr2_4:9322593-9322612 | Msa0313880:intron | 40.0% | |
| AAACCAGAAGACAATCTCTC+AGG | - | chr2_4:9322599-9322618 | None:intergenic | 40.0% | |
| TTTGCATGCAGTAAAGTGAC+AGG | + | chr2_4:9322644-9322663 | Msa0313880:intron | 40.0% | |
| ! | ACTAGTCTCTATGCAAGTTC+TGG | + | chr2_4:9322700-9322719 | Msa0313880:three_prime_UTR | 40.0% |
| TGAACAGTAAGTCTGTCTCT+AGG | + | chr2_4:9322788-9322807 | Msa0313880:three_prime_UTR | 40.0% | |
| ATTGTCAAATGAAAGCCCCA+GGG | - | chr2_4:9322825-9322844 | None:intergenic | 40.0% | |
| TAACGCAACATTGGAATTGC+TGG | - | chr2_4:9322853-9322872 | None:intergenic | 40.0% | |
| GACCAACAGAGTCTACATTC+AGG | + | chr2_4:9318979-9318998 | Msa0313880:five_prime_UTR | 45.0% | |
| TCCCTGAATGTAGACTCTGT+TGG | - | chr2_4:9318984-9319003 | None:intergenic | 45.0% | |
| GGTTTGGGTGATGAAGAAGA+AGG | - | chr2_4:9319290-9319309 | None:intergenic | 45.0% | |
| !! | CGTAACGGTTTTGGTGGTTT+GGG | - | chr2_4:9319305-9319324 | None:intergenic | 45.0% |
| GATGTTACCTTCGTAGCGTT+CGG | - | chr2_4:9319405-9319424 | None:intergenic | 45.0% | |
| AGAATGTTGTTGGAGCACGT+AGG | + | chr2_4:9319581-9319600 | Msa0313880:CDS | 45.0% | |
| GAATGTTGTTGGAGCACGTA+GGG | + | chr2_4:9319582-9319601 | Msa0313880:CDS | 45.0% | |
| AGTTTAAGAGCGGTGATGAG+AGG | + | chr2_4:9319940-9319959 | Msa0313880:CDS | 45.0% | |
| ATAAAGTAGTCCGCAGGACT+TGG | + | chr2_4:9320162-9320181 | Msa0313880:intron | 45.0% | |
| ! | TGTGTTGGTGCTTAGTCTTC+AGG | + | chr2_4:9320433-9320452 | Msa0313880:intron | 45.0% |
| TGCTACATCAAATGCCTGCT+TGG | - | chr2_4:9320905-9320924 | None:intergenic | 45.0% | |
| TGATGTAGCAATCGCTGAGT+TGG | + | chr2_4:9320915-9320934 | Msa0313880:CDS | 45.0% | |
| ACTGATCATGCAGCTTCTGA+GGG | + | chr2_4:9320972-9320991 | Msa0313880:CDS | 45.0% | |
| TGTCAGAAGTCCACAATGTC+AGG | - | chr2_4:9321002-9321021 | None:intergenic | 45.0% | |
| ACTTCTGACATTCCTGAGGA+AGG | + | chr2_4:9321012-9321031 | Msa0313880:CDS | 45.0% | |
| ! | TAGTTTTCACCTCCTTCCTC+AGG | - | chr2_4:9321027-9321046 | None:intergenic | 45.0% |
| GGAATCTCTATCAAGTGGGT+GGG | - | chr2_4:9321236-9321255 | None:intergenic | 45.0% | |
| TGGAATCTCTATCAAGTGGG+TGG | - | chr2_4:9321237-9321256 | None:intergenic | 45.0% | |
| !!! | TGGCATCTGGTTTTGCATCT+TGG | + | chr2_4:9321590-9321609 | Msa0313880:intron | 45.0% |
| !!! | GGCATCTGGTTTTGCATCTT+GGG | + | chr2_4:9321591-9321610 | Msa0313880:intron | 45.0% |
| AGAAGTTGCACAGACAAGAG+GGG | - | chr2_4:9321734-9321753 | None:intergenic | 45.0% | |
| GAGAAGTTGCACAGACAAGA+GGG | - | chr2_4:9321735-9321754 | None:intergenic | 45.0% | |
| AGAGAAGTTGCACAGACAAG+AGG | - | chr2_4:9321736-9321755 | None:intergenic | 45.0% | |
| TTGTCAATAGTGCCGCATTG+CGG | + | chr2_4:9321755-9321774 | Msa0313880:intron | 45.0% | |
| !!! | TGGAATCTGGTTTTGCGTCT+TGG | + | chr2_4:9321855-9321874 | Msa0313880:intron | 45.0% |
| !!! | GGAATCTGGTTTTGCGTCTT+GGG | + | chr2_4:9321856-9321875 | Msa0313880:intron | 45.0% |
| ! | GGAAAAGATGGTGGCAGTTT+GGG | - | chr2_4:9322032-9322051 | None:intergenic | 45.0% |
| ! | TGGAAAAGATGGTGGCAGTT+TGG | - | chr2_4:9322033-9322052 | None:intergenic | 45.0% |
| GTACAATAAACCACTGCTGC+TGG | - | chr2_4:9322053-9322072 | None:intergenic | 45.0% | |
| AATGAGGGAAAGTTGAGGGT+TGG | - | chr2_4:9322075-9322094 | None:intergenic | 45.0% | |
| ! | GATGAGCCACTGATTGATGA+TGG | - | chr2_4:9322131-9322150 | None:intergenic | 45.0% |
| CGATGTTAGACCCCAAAACT+GGG | - | chr2_4:9322161-9322180 | None:intergenic | 45.0% | |
| !!! | CCAGTTTTGGGGTCTAACAT+CGG | + | chr2_4:9322159-9322178 | Msa0313880:intron | 45.0% |
| ATACCACTAAGACCCAATGC+TGG | - | chr2_4:9322274-9322293 | None:intergenic | 45.0% | |
| ! | CAGGTTTTACTAGGGGTTTG+TGG | + | chr2_4:9322663-9322682 | Msa0313880:three_prime_UTR | 45.0% |
| ! | AGTCTCTATGCAAGTTCTGG+TGG | + | chr2_4:9322703-9322722 | Msa0313880:three_prime_UTR | 45.0% |
| CATTGTCAAATGAAAGCCCC+AGG | - | chr2_4:9322826-9322845 | None:intergenic | 45.0% | |
| !! | GCGTAACGGTTTTGGTGGTT+TGG | - | chr2_4:9319306-9319325 | None:intergenic | 50.0% |
| !!! | GTTTTGGTTAGGGGAAGCCA+TGG | - | chr2_4:9319351-9319370 | None:intergenic | 50.0% |
| ! | TGGCGGTGTAGACGAAGTTT+TGG | - | chr2_4:9319367-9319386 | None:intergenic | 50.0% |
| ! | TTCGGCTTGTTCAGCGAGTT+TGG | - | chr2_4:9319387-9319406 | None:intergenic | 50.0% |
| AGCAGCGAGAAGAAGCGAAA+GGG | + | chr2_4:9319632-9319651 | Msa0313880:CDS | 50.0% | |
| ! | TGGTGCTTAGTCTTCAGGCA+TGG | + | chr2_4:9320438-9320457 | Msa0313880:intron | 50.0% |
| ACTTCCCCTAGACACGATGA+TGG | - | chr2_4:9320547-9320566 | None:intergenic | 50.0% | |
| AAAGCCAAACCCAGTCTGAC+GGG | - | chr2_4:9320730-9320749 | None:intergenic | 50.0% | |
| CAAAGCCAAACCCAGTCTGA+CGG | - | chr2_4:9320731-9320750 | None:intergenic | 50.0% | |
| CATCAAATGCCTGCTTGGCA+AGG | - | chr2_4:9320900-9320919 | None:intergenic | 50.0% | |
| CACTGATCATGCAGCTTCTG+AGG | + | chr2_4:9320971-9320990 | Msa0313880:CDS | 50.0% | |
| TGAGGGACAACCTGACATTG+TGG | + | chr2_4:9320989-9321008 | Msa0313880:CDS | 50.0% | |
| GTGGACTTCTGACATTCCTG+AGG | + | chr2_4:9321008-9321027 | Msa0313880:CDS | 50.0% | |
| TCTGACATTCCTGAGGAAGG+AGG | + | chr2_4:9321015-9321034 | Msa0313880:CDS | 50.0% | |
| CACATCCTCCTGTCTGACTA+AGG | - | chr2_4:9321138-9321157 | None:intergenic | 50.0% | |
| TCTCTATCAAGTGGGTGGGA+GGG | - | chr2_4:9321232-9321251 | None:intergenic | 50.0% | |
| ATCTCTATCAAGTGGGTGGG+AGG | - | chr2_4:9321233-9321252 | None:intergenic | 50.0% | |
| ATGTGTCGTGTGGTCCAGAA+TGG | + | chr2_4:9321531-9321550 | Msa0313880:intron | 50.0% | |
| CAACAGACGCAACTCCATTC+TGG | - | chr2_4:9321548-9321567 | None:intergenic | 50.0% | |
| GATGCCAAGACAAGACACGA+AGG | - | chr2_4:9321577-9321596 | None:intergenic | 50.0% | |
| TCGTGTCTTGTCTTGGCATC+TGG | + | chr2_4:9321577-9321596 | Msa0313880:intron | 50.0% | |
| !! | ATAGGAGCGTCACAGTGTTG+TGG | + | chr2_4:9321621-9321640 | Msa0313880:intron | 50.0% |
| GCACAGACAAGAGGGGAAAT+AGG | - | chr2_4:9321727-9321746 | None:intergenic | 50.0% | |
| TGTCAATAGTGCCGCATTGC+GGG | + | chr2_4:9321756-9321775 | Msa0313880:intron | 50.0% | |
| GCCGCCTTCTTGTCTTGAAT+TGG | + | chr2_4:9321835-9321854 | Msa0313880:intron | 50.0% | |
| !!! | GGATAGGAGCGCCAATGTTT+TGG | + | chr2_4:9321884-9321903 | Msa0313880:intron | 50.0% |
| ! | GTGGCAGTTTGGGACAACAA+TGG | - | chr2_4:9322022-9322041 | None:intergenic | 50.0% |
| ACTGCTGCTGGAAAAGATGG+TGG | - | chr2_4:9322041-9322060 | None:intergenic | 50.0% | |
| ! | ACCATCTTTTCCAGCAGCAG+TGG | + | chr2_4:9322040-9322059 | Msa0313880:intron | 50.0% |
| ACCACTGCTGCTGGAAAAGA+TGG | - | chr2_4:9322044-9322063 | None:intergenic | 50.0% | |
| CCGATGTTAGACCCCAAAAC+TGG | - | chr2_4:9322162-9322181 | None:intergenic | 50.0% | |
| ! | CTTCCAGCATTGGGTCTTAG+TGG | + | chr2_4:9322268-9322287 | Msa0313880:intron | 50.0% |
| TCTGCATTATCTCCTGCAGG+AGG | - | chr2_4:9322559-9322578 | None:intergenic | 50.0% | |
| TCCTGCAGGAGATAATGCAG+AGG | + | chr2_4:9322558-9322577 | Msa0313880:CDS | 50.0% | |
| ACCTCTGCATTATCTCCTGC+AGG | - | chr2_4:9322562-9322581 | None:intergenic | 50.0% | |
| ! | GGCTTGTTCAGCGAGTTTGG+CGG | - | chr2_4:9319384-9319403 | None:intergenic | 55.0% |
| GAACAAGCCGAACGCTACGA+AGG | + | chr2_4:9319395-9319414 | Msa0313880:CDS | 55.0% | |
| TTGGAGCACGTAGGGCTTCT+TGG | + | chr2_4:9319590-9319609 | Msa0313880:CDS | 55.0% | |
| GAGCAGCGAGAAGAAGCGAA+AGG | + | chr2_4:9319631-9319650 | Msa0313880:CDS | 55.0% | |
| GAGCGGTGATGAGAGGAAAG+AGG | + | chr2_4:9319947-9319966 | Msa0313880:CDS | 55.0% | |
| !! | GTCCGCAGGACTTGGCTTTT+CGG | + | chr2_4:9320170-9320189 | Msa0313880:intron | 55.0% |
| !! | TCCGCAGGACTTGGCTTTTC+GGG | + | chr2_4:9320171-9320190 | Msa0313880:intron | 55.0% |
| TCCCGAAAAGCCAAGTCCTG+CGG | - | chr2_4:9320175-9320194 | None:intergenic | 55.0% | |
| TAACTCAGCCTCTGCAGCAG+TGG | - | chr2_4:9320695-9320714 | None:intergenic | 55.0% | |
| ACATCCCGTCAGACTGGGTT+TGG | + | chr2_4:9320723-9320742 | Msa0313880:CDS | 55.0% | |
| ! | AGAGACCAGCCTAGCACTGA+GGG | - | chr2_4:9320840-9320859 | None:intergenic | 55.0% |
| AAGAGACCAGCCTAGCACTG+AGG | - | chr2_4:9320841-9320860 | None:intergenic | 55.0% | |
| CTGTCAGGCCTGCTTTCTAG+AGG | - | chr2_4:9321384-9321403 | None:intergenic | 55.0% | |
| CGCATTACCGTGGCGTGAAA+CGG | + | chr2_4:9321490-9321509 | Msa0313880:intron | 55.0% | |
| ATTACCGTGGCGTGAAACGG+TGG | + | chr2_4:9321493-9321512 | Msa0313880:intron | 55.0% | |
| TCTGGACCACACGACACATC+TGG | - | chr2_4:9321530-9321549 | None:intergenic | 55.0% | |
| GCCAAGACAAGACACGAAGG+CGG | - | chr2_4:9321574-9321593 | None:intergenic | 55.0% | |
| TGCATCTTGGGTCCTGCGAT+AGG | + | chr2_4:9321603-9321622 | Msa0313880:intron | 55.0% | |
| GTCAATAGTGCCGCATTGCG+GGG | + | chr2_4:9321757-9321776 | Msa0313880:intron | 55.0% | |
| TCAATAGTGCCGCATTGCGG+GGG | + | chr2_4:9321758-9321777 | Msa0313880:intron | 55.0% | |
| ACAGCCGCAACTCCATTCTG+GGG | - | chr2_4:9321811-9321830 | None:intergenic | 55.0% | |
| GACAGCCGCAACTCCATTCT+GGG | - | chr2_4:9321812-9321831 | None:intergenic | 55.0% | |
| !! | TGGTTTTGCGTCTTGGGTGC+TGG | + | chr2_4:9321862-9321881 | Msa0313880:intron | 55.0% |
| ! | GGTTTTGCGTCTTGGGTGCT+GGG | + | chr2_4:9321863-9321882 | Msa0313880:intron | 55.0% |
| TATCTCCTGCAGGAGGAGCT+CGG | - | chr2_4:9322552-9322571 | None:intergenic | 55.0% | |
| GAGCACGTAGGGCTTCTTGG+AGG | + | chr2_4:9319593-9319612 | Msa0313880:CDS | 60.0% | |
| AGTCTGACGGGATGTGTGGG+AGG | - | chr2_4:9320718-9320737 | None:intergenic | 60.0% | |
| TCCCACACATCCCGTCAGAC+TGG | + | chr2_4:9320717-9320736 | Msa0313880:CDS | 60.0% | |
| CCCAGTCTGACGGGATGTGT+GGG | - | chr2_4:9320721-9320740 | None:intergenic | 60.0% | |
| CCCACACATCCCGTCAGACT+GGG | + | chr2_4:9320718-9320737 | Msa0313880:CDS | 60.0% | |
| ACCCAGTCTGACGGGATGTG+TGG | - | chr2_4:9320722-9320741 | None:intergenic | 60.0% | |
| ! | AGACCAGCCTAGCACTGAGG+GGG | - | chr2_4:9320838-9320857 | None:intergenic | 60.0% |
| ! | GAGACCAGCCTAGCACTGAG+GGG | - | chr2_4:9320839-9320858 | None:intergenic | 60.0% |
| GGCTTGTCACCTTGCCAAGC+AGG | + | chr2_4:9320888-9320907 | Msa0313880:CDS | 60.0% | |
| CCACGGTAATGCGCCGCAAT+TGG | - | chr2_4:9321483-9321502 | None:intergenic | 60.0% | |
| CCAATTGCGGCGCATTACCG+TGG | + | chr2_4:9321480-9321499 | Msa0313880:intron | 60.0% | |
| CTAGCCACCGTTTCACGCCA+CGG | - | chr2_4:9321500-9321519 | None:intergenic | 60.0% | |
| TGCCTGCCAGATGTGTCGTG+TGG | + | chr2_4:9321521-9321540 | Msa0313880:intron | 60.0% | |
| GACCACACGACACATCTGGC+AGG | - | chr2_4:9321526-9321545 | None:intergenic | 60.0% | |
| GCCGCCTTCGTGTCTTGTCT+TGG | + | chr2_4:9321570-9321589 | Msa0313880:intron | 60.0% | |
| CACTGTGACGCTCCTATCGC+AGG | - | chr2_4:9321618-9321637 | None:intergenic | 60.0% | |
| CAATAGTGCCGCATTGCGGG+GGG | + | chr2_4:9321759-9321778 | Msa0313880:intron | 60.0% | |
| ! | GGCTACTTTGCCCCCCAGAA+TGG | + | chr2_4:9321796-9321815 | Msa0313880:intron | 60.0% |
| TGCCCCCCAGAATGGAGTTG+CGG | + | chr2_4:9321804-9321823 | Msa0313880:intron | 60.0% | |
| AGCCGCAACTCCATTCTGGG+GGG | - | chr2_4:9321809-9321828 | None:intergenic | 60.0% | |
| CAGCCGCAACTCCATTCTGG+GGG | - | chr2_4:9321810-9321829 | None:intergenic | 60.0% | |
| CGACAGCCGCAACTCCATTC+TGG | - | chr2_4:9321813-9321832 | None:intergenic | 60.0% | |
| !! | TGCGTCTTGGGTGCTGGGAT+AGG | + | chr2_4:9321868-9321887 | Msa0313880:intron | 60.0% |
| ATCTCCTGCAGGAGGAGCTC+GGG | - | chr2_4:9322551-9322570 | None:intergenic | 60.0% | |
| GGAAGCCTCCACTGCTGCAG+AGG | + | chr2_4:9320684-9320703 | Msa0313880:intron | 65.0% | |
| CTCAGCCTCTGCAGCAGTGG+AGG | - | chr2_4:9320692-9320711 | None:intergenic | 65.0% | |
| GTTGCACCCCCCTCAGTGCT+AGG | + | chr2_4:9320828-9320847 | Msa0313880:intron | 65.0% | |
| ! | GACCAGCCTAGCACTGAGGG+GGG | - | chr2_4:9320837-9320856 | None:intergenic | 65.0% |
| CACCCCCCTCAGTGCTAGGC+TGG | + | chr2_4:9320832-9320851 | Msa0313880:intron | 70.0% | |
| TAGTGCCGCATTGCGGGGGG+TGG | + | chr2_4:9321762-9321781 | Msa0313880:intron | 70.0% | |
| AGTGCCGCATTGCGGGGGGT+GGG | + | chr2_4:9321763-9321782 | Msa0313880:intron | 70.0% | |
| TCACCCCACCCCCCGCAATG+CGG | - | chr2_4:9321770-9321789 | None:intergenic | 70.0% | |
| CGGGGGGTGGGGTGAAACAG+TGG | + | chr2_4:9321775-9321794 | Msa0313880:intron | 70.0% | |
| TCTGCCCGAGCTCCTCCTGC+AGG | + | chr2_4:9322544-9322563 | Msa0313880:CDS | 70.0% | |
| GTGCCGCATTGCGGGGGGTG+GGG | + | chr2_4:9321764-9321783 | Msa0313880:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 9318963 | 9322977 | 9318963 | ID=Msa0313880;Name=Msa0313880 |
| chr2_4 | mRNA | 9318963 | 9322977 | 9318963 | ID=Msa0313880-mRNA-1;Parent=Msa0313880;Name=Msa0313880-mRNA-1;_AED=0.18;_eAED=0.18;_QI=387|1|1|1|1|1|7|320|258 |
| chr2_4 | exon | 9318963 | 9319416 | 9318963 | ID=Msa0313880-mRNA-1:exon:3599;Parent=Msa0313880-mRNA-1 |
| chr2_4 | exon | 9319497 | 9319800 | 9319497 | ID=Msa0313880-mRNA-1:exon:3600;Parent=Msa0313880-mRNA-1 |
| chr2_4 | exon | 9319911 | 9319998 | 9319911 | ID=Msa0313880-mRNA-1:exon:3601;Parent=Msa0313880-mRNA-1 |
| chr2_4 | exon | 9320685 | 9320794 | 9320685 | ID=Msa0313880-mRNA-1:exon:3602;Parent=Msa0313880-mRNA-1 |
| chr2_4 | exon | 9320888 | 9321036 | 9320888 | ID=Msa0313880-mRNA-1:exon:3603;Parent=Msa0313880-mRNA-1 |
| chr2_4 | exon | 9322524 | 9322579 | 9322524 | ID=Msa0313880-mRNA-1:exon:3604;Parent=Msa0313880-mRNA-1 |
| chr2_4 | exon | 9322655 | 9322977 | 9322655 | ID=Msa0313880-mRNA-1:exon:3605;Parent=Msa0313880-mRNA-1 |
| chr2_4 | five_prime_UTR | 9318963 | 9319349 | 9318963 | ID=Msa0313880-mRNA-1:five_prime_utr;Parent=Msa0313880-mRNA-1 |
| chr2_4 | CDS | 9319350 | 9319416 | 9319350 | ID=Msa0313880-mRNA-1:cds;Parent=Msa0313880-mRNA-1 |
| chr2_4 | CDS | 9319497 | 9319800 | 9319497 | ID=Msa0313880-mRNA-1:cds;Parent=Msa0313880-mRNA-1 |
| chr2_4 | CDS | 9319911 | 9319998 | 9319911 | ID=Msa0313880-mRNA-1:cds;Parent=Msa0313880-mRNA-1 |
| chr2_4 | CDS | 9320685 | 9320794 | 9320685 | ID=Msa0313880-mRNA-1:cds;Parent=Msa0313880-mRNA-1 |
| chr2_4 | CDS | 9320888 | 9321036 | 9320888 | ID=Msa0313880-mRNA-1:cds;Parent=Msa0313880-mRNA-1 |
| chr2_4 | CDS | 9322524 | 9322579 | 9322524 | ID=Msa0313880-mRNA-1:cds;Parent=Msa0313880-mRNA-1 |
| chr2_4 | CDS | 9322655 | 9322657 | 9322655 | ID=Msa0313880-mRNA-1:cds;Parent=Msa0313880-mRNA-1 |
| chr2_4 | three_prime_UTR | 9322658 | 9322977 | 9322658 | ID=Msa0313880-mRNA-1:three_prime_utr;Parent=Msa0313880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
