Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175940 | XP_039685780.1 | 99.701 | 334 | 1 | 0 | 1 | 334 | 1 | 334 | 0.0 | 673 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175940 | sp|Q9LZ82|BTR1_ARATH | 64.759 | 332 | 95 | 2 | 1 | 332 | 1 | 310 | 1.04e-152 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175940 | B3SGL8 | 99.701 | 334 | 1 | 0 | 1 | 334 | 1 | 334 | 0.0 | 673 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016540 | Msa0175940 | 0.847253 | 1.299823e-59 | -8.615850e-47 |
| Msa0037410 | Msa0175940 | 0.815428 | 9.292770e-52 | -8.615850e-47 |
| Msa0062350 | Msa0175940 | 0.820593 | 6.319931e-53 | -8.615850e-47 |
| Msa0130110 | Msa0175940 | 0.829905 | 3.961870e-55 | -8.615850e-47 |
| Msa0171850 | Msa0175940 | 0.801500 | 8.746394e-49 | -8.615850e-47 |
| Msa0174000 | Msa0175940 | 0.802829 | 4.658119e-49 | -8.615850e-47 |
| Msa0175940 | Msa0178120 | 0.805923 | 1.056030e-49 | -8.615850e-47 |
| Msa0175940 | Msa0262480 | 0.809880 | 1.520495e-50 | -8.615850e-47 |
| Msa0175940 | Msa0313880 | 0.809915 | 1.494155e-50 | -8.615850e-47 |
| Msa0175940 | Msa0822570 | 0.808693 | 2.731755e-50 | -8.615850e-47 |
| Msa0175940 | Msa1083880 | 0.800703 | 1.272536e-48 | -8.615850e-47 |
| Msa0175940 | Msa1329450 | 0.801957 | 7.044477e-49 | -8.615850e-47 |
| Msa0175940 | Msa1333970 | 0.819593 | 1.070662e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175940 | MtrunA17_Chr1g0197441 | 99.701 | 334 | 1 | 0 | 1 | 334 | 1 | 334 | 0.0 | 673 |
| Msa0175940 | MtrunA17_Chr2g0285771 | 27.523 | 327 | 179 | 10 | 38 | 322 | 315 | 625 | 1.97e-20 | 92.0 |
| Msa0175940 | MtrunA17_Chr3g0102101 | 91.892 | 37 | 3 | 0 | 146 | 182 | 2 | 38 | 4.35e-17 | 73.9 |
| Msa0175940 | MtrunA17_Chr8g0376551 | 26.844 | 339 | 206 | 8 | 18 | 322 | 297 | 627 | 2.76e-16 | 79.7 |
| Msa0175940 | MtrunA17_Chr1g0151761 | 28.155 | 206 | 123 | 6 | 39 | 232 | 115 | 307 | 3.44e-13 | 70.5 |
| Msa0175940 | MtrunA17_Chr6g0453421 | 23.611 | 216 | 141 | 6 | 36 | 230 | 47 | 259 | 3.26e-12 | 67.4 |
| Msa0175940 | MtrunA17_Chr3g0135621 | 29.310 | 174 | 89 | 6 | 39 | 192 | 89 | 248 | 1.86e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0175940 | AT5G04430.2 | 68.373 | 332 | 104 | 1 | 1 | 332 | 1 | 331 | 9.88e-168 | 470 |
| Msa0175940 | AT5G04430.1 | 64.759 | 332 | 95 | 2 | 1 | 332 | 1 | 310 | 1.06e-153 | 434 |
| Msa0175940 | AT4G10070.1 | 28.723 | 188 | 115 | 4 | 36 | 212 | 176 | 355 | 2.02e-12 | 68.6 |
| Msa0175940 | AT1G33680.1 | 30.286 | 175 | 112 | 5 | 36 | 207 | 232 | 399 | 3.26e-12 | 67.8 |
| Msa0175940 | AT1G51580.1 | 23.562 | 365 | 208 | 10 | 22 | 322 | 255 | 612 | 4.51e-12 | 67.4 |
| Msa0175940 | AT4G18375.1 | 27.119 | 295 | 172 | 12 | 50 | 322 | 113 | 386 | 6.85e-12 | 66.2 |
| Msa0175940 | AT4G18375.2 | 27.119 | 295 | 172 | 12 | 50 | 322 | 326 | 599 | 7.67e-12 | 66.6 |
| Msa0175940 | AT5G15270.2 | 24.911 | 281 | 175 | 11 | 36 | 291 | 50 | 319 | 1.51e-11 | 65.9 |
| Msa0175940 | AT5G15270.1 | 24.911 | 281 | 175 | 11 | 36 | 291 | 50 | 319 | 1.51e-11 | 65.9 |
| Msa0175940 | AT5G15270.3 | 24.911 | 281 | 175 | 11 | 36 | 291 | 50 | 319 | 1.62e-11 | 65.5 |
| Msa0175940 | AT4G26000.1 | 28.824 | 170 | 97 | 5 | 39 | 192 | 77 | 238 | 1.85e-11 | 65.5 |
Find 125 sgRNAs with CRISPR-Local
Find 383 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATACATTTGCTGAATTT+TGG | 0.063945 | 1_4:-62089563 | Msa0175940:three_prime_UTR |
| TCTGCTGCTGGTTCTGTTAT+TGG | 0.155104 | 1_4:-62092665 | Msa0175940:CDS |
| AGTTCTCCATTTACATATTC+TGG | 0.187488 | 1_4:-62091762 | Msa0175940:intron |
| GGTTCTTGTGGTGGAATAAT+TGG | 0.190144 | 1_4:-62092316 | Msa0175940:CDS |
| CTTGTCTACTGTTAGATTCT+TGG | 0.203877 | 1_4:-62089603 | Msa0175940:three_prime_UTR |
| GCATGTTATTTCATGTTTAT+TGG | 0.214280 | 1_4:-62089147 | Msa0175940:three_prime_UTR |
| TGCTTATGTCTCGGGTTATC+AGG | 0.225760 | 1_4:-62090816 | Msa0175940:CDS |
| TGAGGAAAACCTTGCTGTTC+TGG | 0.228212 | 1_4:+62090705 | None:intergenic |
| GCCAACGTATGTTAGGTTTC+TGG | 0.253097 | 1_4:-62092696 | Msa0175940:CDS |
| GCGTGCTTCCTCGGTCCTTC+TGG | 0.266060 | 1_4:+62094585 | None:intergenic |
| GAAACGAAGGAGTGAGAATT+AGG | 0.276588 | 1_4:-62094685 | Msa0175940:intron |
| TCTGTCACTTAATATACTTT+TGG | 0.301009 | 1_4:-62089520 | Msa0175940:three_prime_UTR |
| TGACTCATATCTTCAATTAC+TGG | 0.305395 | 1_4:-62089276 | Msa0175940:three_prime_UTR |
| GTTTATTGGCTGTCATTATT+CGG | 0.329864 | 1_4:-62089133 | Msa0175940:three_prime_UTR |
| ATAGTTCTAAATACTACATT+TGG | 0.332776 | 1_4:+62089374 | None:intergenic |
| CACTGACCAGAATATGTAAA+TGG | 0.348856 | 1_4:+62091756 | None:intergenic |
| GACAGAGGCGATTACATATC+TGG | 0.356100 | 1_4:-62089877 | Msa0175940:CDS |
| TACAGGAAAGTTACCATAAC+AGG | 0.362697 | 1_4:-62089717 | Msa0175940:intron |
| ATTCAAAAGATAAGATCTAT+TGG | 0.364020 | 1_4:-62089416 | Msa0175940:three_prime_UTR |
| TTCAATTACTGGCCTGAGAT+AGG | 0.364764 | 1_4:-62089265 | Msa0175940:three_prime_UTR |
| TAGAAAAGCCAACGTATGTT+AGG | 0.371439 | 1_4:-62092703 | Msa0175940:CDS |
| GCTTTATATGATTAGCTTCA+CGG | 0.375367 | 1_4:-62092394 | Msa0175940:intron |
| CCTCAAGATAATAGTTACTA+TGG | 0.376647 | 1_4:-62091894 | Msa0175940:CDS |
| GATGGAAGCACATATGTATA+TGG | 0.380012 | 1_4:+62090788 | None:intergenic |
| ATTCATTATTGCGTGACAAC+TGG | 0.381238 | 1_4:+62092591 | None:intergenic |
| TGCTCTCTGCGATCCTGTTA+TGG | 0.387586 | 1_4:+62089704 | None:intergenic |
| TTATTTGCAGTGATAGCAAT+TGG | 0.393704 | 1_4:-62089229 | Msa0175940:three_prime_UTR |
| ATACCTTGTGAAGGTGAATC+AGG | 0.397770 | 1_4:+62094549 | None:intergenic |
| TAATCAAATCAAATACAAAA+TGG | 0.398141 | 1_4:+62089092 | None:intergenic |
| GTGAGACTCATTGTTCCTAA+TGG | 0.398744 | 1_4:-62092337 | Msa0175940:CDS |
| GATGACACGTAAGAAGATTC+AGG | 0.399735 | 1_4:+62094609 | None:intergenic |
| GATCGGATTATCATGGTATC+TGG | 0.414971 | 1_4:-62092551 | Msa0175940:CDS |
| ATTCCACCACAAGAACCATT+AGG | 0.428562 | 1_4:+62092322 | None:intergenic |
| AACTTTGCTCCAGTACCATT+AGG | 0.429145 | 1_4:+62090728 | None:intergenic |
| CTGGTATCAAACTCTGCTGC+TGG | 0.438478 | 1_4:-62092677 | Msa0175940:CDS |
| GTTACTATGGACAAAATGAT+AGG | 0.441534 | 1_4:-62091881 | Msa0175940:CDS |
| CGCAATAATGAATTCTTCCC+TGG | 0.444645 | 1_4:-62092581 | Msa0175940:CDS |
| GTTCTTGTGGTGGAATAATT+GGG | 0.454264 | 1_4:-62092315 | Msa0175940:CDS |
| GCTGGTTCTGTTATTGGAAA+GGG | 0.456735 | 1_4:-62092659 | Msa0175940:CDS |
| ACATATCTGGAACAACTGAT+AGG | 0.462362 | 1_4:-62089864 | Msa0175940:intron |
| AAGAGAAGAGAAGAAGAAGT+TGG | 0.465351 | 1_4:+62094828 | None:intergenic |
| TGGTTGTTGGCCGCGGTGGA+AGG | 0.467698 | 1_4:-62090036 | Msa0175940:CDS |
| GGTGAAGAAGCGTGCTTCCT+CGG | 0.469105 | 1_4:+62094576 | None:intergenic |
| GGAATTAAGAATTCACTTGT+GGG | 0.475476 | 1_4:-62089207 | Msa0175940:three_prime_UTR |
| TGCTGGTTCTGTTATTGGAA+AGG | 0.479085 | 1_4:-62092660 | Msa0175940:CDS |
| AACAAAACGTGACGTTGCGG+TGG | 0.480405 | 1_4:-62094888 | Msa0175940:five_prime_UTR |
| GGAAGGGAGGTGCTACCATC+AGG | 0.484173 | 1_4:-62092294 | Msa0175940:intron |
| TTGGAGATCTTTATTGTAGT+GGG | 0.484417 | 1_4:-62089501 | Msa0175940:three_prime_UTR |
| CCGCGGTGGAAGGAATATAT+CGG | 0.484736 | 1_4:-62090026 | Msa0175940:CDS |
| TAATCTGATGGCTTGATCAA+TGG | 0.485053 | 1_4:-62089071 | Msa0175940:three_prime_UTR |
| ATAGGATTGGTTGTTGGCCG+CGG | 0.486310 | 1_4:-62090043 | Msa0175940:CDS |
| GGAGTGAATTACAGACCTAA+TGG | 0.486780 | 1_4:-62090743 | Msa0175940:CDS |
| ATAATCCGATCAGTGGTTCC+AGG | 0.487212 | 1_4:+62092563 | None:intergenic |
| TTTGGAGATCTTTATTGTAG+TGG | 0.490259 | 1_4:-62089502 | Msa0175940:three_prime_UTR |
| AAGATAAGATCTATTGGAAA+GGG | 0.490740 | 1_4:-62089410 | Msa0175940:three_prime_UTR |
| GGGAATTAAGAATTCACTTG+TGG | 0.491767 | 1_4:-62089208 | Msa0175940:three_prime_UTR |
| TATTTGCAGTGATAGCAATT+GGG | 0.497798 | 1_4:-62089228 | Msa0175940:three_prime_UTR |
| AATTACAGACCTAATGGTAC+TGG | 0.501753 | 1_4:-62090737 | Msa0175940:CDS |
| AGGAACAATGAGTCTCACTT+TGG | 0.502565 | 1_4:+62092342 | None:intergenic |
| ATTTGATTTGATTAATCTGA+TGG | 0.507029 | 1_4:-62089083 | Msa0175940:three_prime_UTR |
| GAATATATCGGATATTAGTC+AGG | 0.509340 | 1_4:-62090014 | Msa0175940:intron |
| TAACTCTCAGATCCTATCTC+AGG | 0.511746 | 1_4:+62089253 | None:intergenic |
| TAATTCACTCCGTTGTATGC+TGG | 0.514758 | 1_4:+62090755 | None:intergenic |
| ATATGTAAATGGAGAACTCA+TGG | 0.515463 | 1_4:+62091767 | None:intergenic |
| AATGTATGAGCAGCGCAAGC+AGG | 0.518966 | 1_4:+62089576 | None:intergenic |
| GGTGTTGCAGATGAGCATAT+AGG | 0.530598 | 1_4:-62090061 | Msa0175940:CDS |
| AGTAACAGTGACAGGAACTC+TGG | 0.531115 | 1_4:-62091856 | Msa0175940:CDS |
| GTTCCTAATGGTTCTTGTGG+TGG | 0.531212 | 1_4:-62092325 | Msa0175940:CDS |
| GAGCATATAGGATTGGTTGT+TGG | 0.541049 | 1_4:-62090049 | Msa0175940:CDS |
| GATCTTTATTGTAGTGGGAG+AGG | 0.545289 | 1_4:-62089496 | Msa0175940:three_prime_UTR |
| TTATTGTAGTGGGAGAGGGC+AGG | 0.545988 | 1_4:-62089491 | Msa0175940:three_prime_UTR |
| ATCTTTATTGTAGTGGGAGA+GGG | 0.546637 | 1_4:-62089495 | Msa0175940:three_prime_UTR |
| GATAGGATAGTAACAGTGAC+AGG | 0.551160 | 1_4:-62091864 | Msa0175940:CDS |
| AAAATTGTGATTCATTTCAG+TGG | 0.553609 | 1_4:-62094993 | Msa0175940:five_prime_UTR |
| AAAGATAAGATCTATTGGAA+AGG | 0.553782 | 1_4:-62089411 | Msa0175940:three_prime_UTR |
| GATATGAGTCAACTGCTGCC+AGG | 0.554138 | 1_4:+62089288 | None:intergenic |
| CATCACAACTTGAAGGTGTA+GGG | 0.554744 | 1_4:+62089175 | None:intergenic |
| GCACACACATCACAACTTGA+AGG | 0.554896 | 1_4:+62089168 | None:intergenic |
| GCTTATGTCTCGGGTTATCA+GGG | 0.556130 | 1_4:-62090815 | Msa0175940:CDS |
| ACTGCTGCCAGGATAGCAAA+AGG | 0.558767 | 1_4:+62089299 | None:intergenic |
| AACCACTGATCGGATTATCA+TGG | 0.561992 | 1_4:-62092558 | Msa0175940:CDS |
| CGAAGCAACTCAATGACCAT+TGG | 0.562529 | 1_4:-62090082 | Msa0175940:CDS |
| TCTTCCCTGGAACCACTGAT+CGG | 0.566105 | 1_4:-62092568 | Msa0175940:CDS |
| TGCTTATGCTACCGAGAGAG+TGG | 0.567022 | 1_4:-62089646 | Msa0175940:CDS |
| ACAAAACGTGACGTTGCGGT+GGG | 0.572887 | 1_4:-62094887 | Msa0175940:five_prime_UTR |
| GGTTCTGTTATTGGAAAGGG+TGG | 0.573790 | 1_4:-62092656 | Msa0175940:CDS |
| ACATCACAACTTGAAGGTGT+AGG | 0.576336 | 1_4:+62089174 | None:intergenic |
| TGCAGATGAGCATATAGGAT+TGG | 0.578537 | 1_4:-62090056 | Msa0175940:CDS |
| TGCTAATATCATATATAGAG+TGG | 0.579004 | 1_4:-62089327 | Msa0175940:three_prime_UTR |
| GGATTGGTTGTTGGCCGCGG+TGG | 0.579630 | 1_4:-62090040 | Msa0175940:CDS |
| TTCATTGAAGAATCTCAAGC+TGG | 0.580937 | 1_4:-62091930 | Msa0175940:CDS |
| TATGCTGGTGGTGCAACAGA+TGG | 0.582226 | 1_4:+62090770 | None:intergenic |
| TGTGGTGGAATAATTGGGAA+GGG | 0.585404 | 1_4:-62092310 | Msa0175940:CDS |
| TTGTGGTGGAATAATTGGGA+AGG | 0.587577 | 1_4:-62092311 | Msa0175940:CDS |
| CCATAGTAACTATTATCTTG+AGG | 0.592910 | 1_4:+62091894 | None:intergenic |
| ATGCTCATCTGCAACACCAA+TGG | 0.602648 | 1_4:+62090066 | None:intergenic |
| GAGATAGATATACCTTGTGA+AGG | 0.605051 | 1_4:+62094540 | None:intergenic |
| ATTCTGCTGCGTTGTGTGTG+AGG | 0.610881 | 1_4:+62094930 | None:intergenic |
| AAATTACTACTCCACTCTCT+CGG | 0.611185 | 1_4:+62089635 | None:intergenic |
| TGTGAAGGTGAATCAGGAGG+AGG | 0.613856 | 1_4:+62094555 | None:intergenic |
| CAAAATGGTAGTAAATTCAA+CGG | 0.613889 | 1_4:+62089107 | None:intergenic |
| ATTGTTCCTAATGGTTCTTG+TGG | 0.614655 | 1_4:-62092328 | Msa0175940:CDS |
| TAATCCGATCAGTGGTTCCA+GGG | 0.614702 | 1_4:+62092564 | None:intergenic |
| TTCACTCCGTTGTATGCTGG+TGG | 0.615585 | 1_4:+62090758 | None:intergenic |
| TGAATCTATGATACTGCAGA+AGG | 0.623036 | 1_4:-62089670 | Msa0175940:CDS |
| TACCATGATAATCCGATCAG+TGG | 0.623671 | 1_4:+62092556 | None:intergenic |
| AGAAGAAGAAGTTGGTGCTG+CGG | 0.626870 | 1_4:+62094836 | None:intergenic |
| ACTCTGGATGAGCAGATGCG+TGG | 0.628470 | 1_4:-62091840 | Msa0175940:CDS |
| ATATGATTAGCTTCACGGCG+AGG | 0.636503 | 1_4:-62092389 | Msa0175940:intron |
| CTCATGGAATGTGAATAATG+AGG | 0.636799 | 1_4:+62091783 | None:intergenic |
| ATCGCAGAGAGCAATTCGTA+CGG | 0.639819 | 1_4:-62089694 | Msa0175940:CDS |
| GGTGGAATAATTGGGAAGGG+AGG | 0.640620 | 1_4:-62092307 | Msa0175940:CDS |
| CAAAACAAAACGTGACGTTG+CGG | 0.645823 | 1_4:-62094891 | Msa0175940:five_prime_UTR |
| TCGTCGCTGAAGAACAACAA+TGG | 0.647980 | 1_4:-62094637 | Msa0175940:exon |
| CCTCCTGATTCACCTTCACA+AGG | 0.648979 | 1_4:-62094552 | Msa0175940:intron |
| AGCAAAGTTCCAGAACAGCA+AGG | 0.651421 | 1_4:-62090714 | Msa0175940:intron |
| ACCAGAAACCTAACATACGT+TGG | 0.662582 | 1_4:+62092695 | None:intergenic |
| TCTTTCAAAGTTGCTCAGTG+AGG | 0.665119 | 1_4:-62092492 | Msa0175940:intron |
| TTGATCAATGGTTAGAAGTG+TGG | 0.669469 | 1_4:-62089059 | Msa0175940:three_prime_UTR |
| CCTTGTGAAGGTGAATCAGG+AGG | 0.679544 | 1_4:+62094552 | None:intergenic |
| AAGATAAAGATATCAGACAG+AGG | 0.683928 | 1_4:-62089892 | Msa0175940:CDS |
| TCTTACGTGTCATCTCCAGA+AGG | 0.691710 | 1_4:-62094600 | Msa0175940:CDS |
| TGTCATCTCCAGAAGGACCG+AGG | 0.694724 | 1_4:-62094593 | Msa0175940:CDS |
| GTTGCACCACCAGCATACAA+CGG | 0.711710 | 1_4:-62090764 | Msa0175940:CDS |
| CCGATATATTCCTTCCACCG+CGG | 0.792135 | 1_4:+62090026 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATTTCAATTCTAATT+TGG | + | chr1_4:62090074-62090093 | None:intergenic | 10.0% |
| !!! | AATTTTAAGAATGTTTTTTT+AGG | - | chr1_4:62090592-62090611 | Msa0175940:intron | 10.0% |
| !!! | CATTTATTTTTAAAATATGA+GGG | - | chr1_4:62093096-62093115 | Msa0175940:intron | 10.0% |
| !!! | AGTTTATTTTTTATTCTAAA+GGG | - | chr1_4:62093543-62093562 | Msa0175940:intron | 10.0% |
| !!! | CTAACAAATAATTTTTAAAT+TGG | - | chr1_4:62093918-62093937 | Msa0175940:intron | 10.0% |
| !!! | TTGTTTGAAATTATCAAATT+TGG | - | chr1_4:62090381-62090400 | Msa0175940:intron | 15.0% |
| !!! | ATTTGTTTTGTTTTGTTTTA+TGG | - | chr1_4:62090531-62090550 | Msa0175940:intron | 15.0% |
| !!! | TTTGTTTTGTTTTGTTTTAT+GGG | - | chr1_4:62090532-62090551 | Msa0175940:intron | 15.0% |
| !!! | TTAATATTTTTTTTCTCCAA+TGG | - | chr1_4:62090857-62090876 | Msa0175940:intron | 15.0% |
| !! | AAAATTAAATAATGCTGAAT+CGG | - | chr1_4:62090930-62090949 | Msa0175940:intron | 15.0% |
| !!! | TGAAATTTTAAGTTTTATGT+CGG | - | chr1_4:62091087-62091106 | Msa0175940:intron | 15.0% |
| !! | AATTTCATAAATATGGTAAA+CGG | + | chr1_4:62091819-62091838 | None:intergenic | 15.0% |
| !! | TATTATTTACTTATACATCA+GGG | - | chr1_4:62092645-62092664 | Msa0175940:CDS | 15.0% |
| !!! | ATTTGAATTTTAGGAATAAT+AGG | - | chr1_4:62092887-62092906 | Msa0175940:intron | 15.0% |
| !!! | GCATTTATTTTTAAAATATG+AGG | - | chr1_4:62093095-62093114 | Msa0175940:intron | 15.0% |
| !!! | CAGTTTATTTTTTATTCTAA+AGG | - | chr1_4:62093542-62093561 | Msa0175940:intron | 15.0% |
| !!! | GTTTATTTTTTATTCTAAAG+GGG | - | chr1_4:62093544-62093563 | Msa0175940:intron | 15.0% |
| !!! | AAAATTATTTGTTAGTGTTA+GGG | + | chr1_4:62093913-62093932 | None:intergenic | 15.0% |
| !!! | AAAAATTATTTGTTAGTGTT+AGG | + | chr1_4:62093914-62093933 | None:intergenic | 15.0% |
| !! | TAATCAAATCAAATACAAAA+TGG | + | chr1_4:62094962-62094981 | None:intergenic | 15.0% |
| !!! | TTTTTTTATCCTGTTTCTTA+CGG | - | chr1_4:62089880-62089899 | Msa0175940:CDS | 20.0% |
| !!! | GATTTTATTTTGTGAAAGAT+TGG | - | chr1_4:62089999-62090018 | Msa0175940:intron | 20.0% |
| !! | TATTTAACAACATGGATAAT+CGG | + | chr1_4:62090679-62090698 | None:intergenic | 20.0% |
| !! | TATCCATGTTGTTAAATAAT+TGG | - | chr1_4:62090681-62090700 | Msa0175940:intron | 20.0% |
| !! | AACTAATTGAATCAATATCA+TGG | + | chr1_4:62091591-62091610 | None:intergenic | 20.0% |
| !! | ATTTCATAAATATGGTAAAC+GGG | + | chr1_4:62091818-62091837 | None:intergenic | 20.0% |
| !! | CAGTACTAATTTCATAAATA+TGG | + | chr1_4:62091826-62091845 | None:intergenic | 20.0% |
| !!! | TTTTTAATGTTATTCAGAGA+TGG | - | chr1_4:62092053-62092072 | Msa0175940:intron | 20.0% |
| !!! | TTTTAATGTTATTCAGAGAT+GGG | - | chr1_4:62092054-62092073 | Msa0175940:intron | 20.0% |
| !! | GTATTATTTACTTATACATC+AGG | - | chr1_4:62092644-62092663 | Msa0175940:CDS | 20.0% |
| !! | AAGGTAAAATATGATTAAGA+TGG | - | chr1_4:62092754-62092773 | Msa0175940:intron | 20.0% |
| !!! | CTTAATGTCATTTGAATTTT+AGG | - | chr1_4:62092878-62092897 | Msa0175940:intron | 20.0% |
| !! | AAACTACCATAATTAGTATT+GGG | + | chr1_4:62093048-62093067 | None:intergenic | 20.0% |
| !! | TAAACTACCATAATTAGTAT+TGG | + | chr1_4:62093049-62093068 | None:intergenic | 20.0% |
| !!! | AACTTTTTAACATGCATTTT+AGG | - | chr1_4:62093212-62093231 | Msa0175940:intron | 20.0% |
| !! | CATTAACAAGATTAAATTGA+TGG | + | chr1_4:62093374-62093393 | None:intergenic | 20.0% |
| !! | CATCAATTTAATCTTGTTAA+TGG | - | chr1_4:62093372-62093391 | Msa0175940:intron | 20.0% |
| !! | CAATATCTAATTAGCTAAAA+GGG | - | chr1_4:62093678-62093697 | Msa0175940:intron | 20.0% |
| !! | GTATTATGCAAATATTTCAA+AGG | + | chr1_4:62093830-62093849 | None:intergenic | 20.0% |
| !!! | ATAGATCTTATCTTTTGAAT+GGG | + | chr1_4:62094635-62094654 | None:intergenic | 20.0% |
| !!! | AATAGATCTTATCTTTTGAA+TGG | + | chr1_4:62094636-62094655 | None:intergenic | 20.0% |
| !! | ATTCAAAAGATAAGATCTAT+TGG | - | chr1_4:62094635-62094654 | Msa0175940:exon | 20.0% |
| !!! | ATAGTTCTAAATACTACATT+TGG | + | chr1_4:62094680-62094699 | None:intergenic | 20.0% |
| !!! | ATTTGATTTGATTAATCTGA+TGG | - | chr1_4:62094968-62094987 | Msa0175940:five_prime_UTR | 20.0% |
| ! | AAAATTGTGATTCATTTCAG+TGG | - | chr1_4:62089058-62089077 | Msa0175940:three_prime_UTR | 25.0% |
| ! | AGTGAGAAAAAAAGTGAATA+CGG | + | chr1_4:62089261-62089280 | None:intergenic | 25.0% |
| ! | GAAAGAAACAAAAATCACAT+CGG | + | chr1_4:62089690-62089709 | None:intergenic | 25.0% |
| ! | TTCCTTCACATCAATTAATT+TGG | + | chr1_4:62089833-62089852 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTCTGTTGAGTT+TGG | - | chr1_4:62089907-62089926 | Msa0175940:CDS | 25.0% |
| !! | TCTTTGATGGAAAGTTTTTA+AGG | - | chr1_4:62090123-62090142 | Msa0175940:intron | 25.0% |
| ! | CACATTTGTGTGATTAATTT+AGG | - | chr1_4:62090456-62090475 | Msa0175940:intron | 25.0% |
| ! | GTACCAATTATTTAACAACA+TGG | + | chr1_4:62090687-62090706 | None:intergenic | 25.0% |
| !!! | ATGATAGTTTTAATGTCCAT+TGG | + | chr1_4:62090876-62090895 | None:intergenic | 25.0% |
| !! | ATCAGTAGTGTTATTAATAG+CGG | + | chr1_4:62091265-62091284 | None:intergenic | 25.0% |
| ! | ATAAAAAATGTCTTGCATTG+CGG | - | chr1_4:62091617-62091636 | Msa0175940:intron | 25.0% |
| !!! | ATTTTCTTTGTCAAGTTGTA+GGG | - | chr1_4:62091788-62091807 | Msa0175940:CDS | 25.0% |
| !!! | GAATATGTTTTGATTTCAAG+AGG | - | chr1_4:62091891-62091910 | Msa0175940:CDS | 25.0% |
| !!! | TATGCTTATTTTTAGTTGCA+GGG | + | chr1_4:62091982-62092001 | None:intergenic | 25.0% |
| !!! | ATATGCTTATTTTTAGTTGC+AGG | + | chr1_4:62091983-62092002 | None:intergenic | 25.0% |
| ! | AATAAGCATATGTTATTGTC+AGG | - | chr1_4:62091992-62092011 | Msa0175940:intron | 25.0% |
| ! | TTTAATGTTATTCAGAGATG+GGG | - | chr1_4:62092055-62092074 | Msa0175940:intron | 25.0% |
| ! | TCAAAGGCAAAAAATTCATA+AGG | + | chr1_4:62092093-62092112 | None:intergenic | 25.0% |
| ! | AGCTAAACTAACAATATGTT+GGG | + | chr1_4:62092550-62092569 | None:intergenic | 25.0% |
| ! | AAGCTAAACTAACAATATGT+TGG | + | chr1_4:62092551-62092570 | None:intergenic | 25.0% |
| ! | AAATGTATTCTATGAATCAC+GGG | + | chr1_4:62092803-62092822 | None:intergenic | 25.0% |
| ! | GAAATGTATTCTATGAATCA+CGG | + | chr1_4:62092804-62092823 | None:intergenic | 25.0% |
| !!! | ATTTTGGTATTACGCTAAAA+AGG | - | chr1_4:62093016-62093035 | Msa0175940:intron | 25.0% |
| !! | TACAGCAATTTACTCATTTT+TGG | - | chr1_4:62093070-62093089 | Msa0175940:intron | 25.0% |
| !!! | ACAGCAATTTACTCATTTTT+GGG | - | chr1_4:62093071-62093090 | Msa0175940:intron | 25.0% |
| !! | TTTTTATGGTAGTAAAGTGA+TGG | - | chr1_4:62093128-62093147 | Msa0175940:intron | 25.0% |
| !! | TTATCATGTTTTGTCTTGTA+TGG | - | chr1_4:62093161-62093180 | Msa0175940:intron | 25.0% |
| ! | AAGATTAAATTGATGGAATG+AGG | + | chr1_4:62093367-62093386 | None:intergenic | 25.0% |
| ! | TTATTAAGTAGCAATGACTA+AGG | + | chr1_4:62093472-62093491 | None:intergenic | 25.0% |
| !! | TGATTCTAGAAAACAAAATG+TGG | - | chr1_4:62093585-62093604 | Msa0175940:intron | 25.0% |
| ! | GCAATATCTAATTAGCTAAA+AGG | - | chr1_4:62093677-62093696 | Msa0175940:intron | 25.0% |
| ! | CTAATAATTTCTGACATGAA+TGG | - | chr1_4:62093737-62093756 | Msa0175940:intron | 25.0% |
| !!! | ATTTGATAGCAGATGTTTTA+CGG | - | chr1_4:62094291-62094310 | Msa0175940:intron | 25.0% |
| !! | TTTCTATTTCCTTGTTATAC+AGG | - | chr1_4:62094317-62094336 | Msa0175940:intron | 25.0% |
| !!! | TCATACATTTGCTGAATTTT+GGG | - | chr1_4:62094489-62094508 | Msa0175940:intron | 25.0% |
| !!! | TCTGTCACTTAATATACTTT+TGG | - | chr1_4:62094531-62094550 | Msa0175940:intron | 25.0% |
| ! | AAAGATAAGATCTATTGGAA+AGG | - | chr1_4:62094640-62094659 | Msa0175940:exon | 25.0% |
| ! | AAGATAAGATCTATTGGAAA+GGG | - | chr1_4:62094641-62094660 | Msa0175940:five_prime_UTR | 25.0% |
| ! | TGCTAATATCATATATAGAG+TGG | - | chr1_4:62094724-62094743 | Msa0175940:intron | 25.0% |
| !!! | GCATGTTATTTCATGTTTAT+TGG | - | chr1_4:62094904-62094923 | Msa0175940:five_prime_UTR | 25.0% |
| ! | CAAAATGGTAGTAAATTCAA+CGG | + | chr1_4:62094947-62094966 | None:intergenic | 25.0% |
| AGTGAAGAAACGTATAGATT+CGG | + | chr1_4:62089783-62089802 | None:intergenic | 30.0% | |
| AGCCAAATTAATTGATGTGA+AGG | - | chr1_4:62089828-62089847 | Msa0175940:intron | 30.0% | |
| TGAACACAAATCAATGCTTA+TGG | + | chr1_4:62089933-62089952 | None:intergenic | 30.0% | |
| GTGAAAGATTGGAGTTAATT+TGG | - | chr1_4:62090010-62090029 | Msa0175940:intron | 30.0% | |
| ! | ACTGCAACTTTTATCTTTGA+TGG | - | chr1_4:62090110-62090129 | Msa0175940:intron | 30.0% |
| !!! | TTTTAAGGTTTAATCCCGTA+TGG | - | chr1_4:62090138-62090157 | Msa0175940:intron | 30.0% |
| TGCGCTAAATAAATACCATA+CGG | + | chr1_4:62090156-62090175 | None:intergenic | 30.0% | |
| GTATTTATTTAGCGCATGTT+TGG | - | chr1_4:62090160-62090179 | Msa0175940:intron | 30.0% | |
| !!! | TGCGATTTTATTTTTCGTAG+TGG | - | chr1_4:62090266-62090285 | Msa0175940:intron | 30.0% |
| ATACTGAAGGGAAGAATAAT+CGG | - | chr1_4:62090289-62090308 | Msa0175940:intron | 30.0% | |
| ! | ATTATATCACTGCATTTTCC+AGG | + | chr1_4:62090575-62090594 | None:intergenic | 30.0% |
| ! | TCTTTATTTCAACTGCTTTG+TGG | - | chr1_4:62091165-62091184 | Msa0175940:intron | 30.0% |
| TAAAAAATGTCTTGCATTGC+GGG | - | chr1_4:62091618-62091637 | Msa0175940:intron | 30.0% | |
| !! | GCTTTATATGATTAGCTTCA+CGG | - | chr1_4:62091657-62091676 | Msa0175940:intron | 30.0% |
| AGAAAATGAATTGTACCTGA+TGG | + | chr1_4:62091775-62091794 | None:intergenic | 30.0% | |
| !! | CATTTTCTTTGTCAAGTTGT+AGG | - | chr1_4:62091787-62091806 | Msa0175940:CDS | 30.0% |
| !!! | ATGCCTTTTGATTTGTGTTT+TGG | - | chr1_4:62091868-62091887 | Msa0175940:CDS | 30.0% |
| !!! | TGCCTTTTGATTTGTGTTTT+GGG | - | chr1_4:62091869-62091888 | Msa0175940:CDS | 30.0% |
| TTCCCAAAACACAAATCAAA+AGG | + | chr1_4:62091874-62091893 | None:intergenic | 30.0% | |
| !! | TTATATGAATGCTGGTTCTT+CGG | - | chr1_4:62091921-62091940 | Msa0175940:CDS | 30.0% |
| !!! | ATGCTTATTTTTAGTTGCAG+GGG | + | chr1_4:62091981-62092000 | None:intergenic | 30.0% |
| TTAATGTTATTCAGAGATGG+GGG | - | chr1_4:62092056-62092075 | Msa0175940:intron | 30.0% | |
| !!! | TGAATTTTTTGCCTTTGATC+AGG | - | chr1_4:62092095-62092114 | Msa0175940:intron | 30.0% |
| CCATAGTAACTATTATCTTG+AGG | + | chr1_4:62092160-62092179 | None:intergenic | 30.0% | |
| CCTCAAGATAATAGTTACTA+TGG | - | chr1_4:62092157-62092176 | Msa0175940:intron | 30.0% | |
| GTTACTATGGACAAAATGAT+AGG | - | chr1_4:62092170-62092189 | Msa0175940:intron | 30.0% | |
| ATATGTAAATGGAGAACTCA+TGG | + | chr1_4:62092287-62092306 | None:intergenic | 30.0% | |
| AGTTCTCCATTTACATATTC+TGG | - | chr1_4:62092289-62092308 | Msa0175940:intron | 30.0% | |
| !! | AGTGTCATTTATTTGTTCCA+CGG | - | chr1_4:62092314-62092333 | Msa0175940:CDS | 30.0% |
| TCGCCAATACTTATATACTT+TGG | - | chr1_4:62092362-62092381 | Msa0175940:CDS | 30.0% | |
| GCTCCAAAGTATATAAGTAT+TGG | + | chr1_4:62092368-62092387 | None:intergenic | 30.0% | |
| ! | TTGCTTTCTTTTTAATGAGC+CGG | - | chr1_4:62092598-62092617 | Msa0175940:CDS | 30.0% |
| TCTTGTAAGTATTCCTTATC+TGG | + | chr1_4:62092834-62092853 | None:intergenic | 30.0% | |
| !! | TTTTAGGAATAATAGGTGCA+AGG | - | chr1_4:62092894-62092913 | Msa0175940:intron | 30.0% |
| !! | TTGTTCTGAAAGAGTAATAG+TGG | - | chr1_4:62092965-62092984 | Msa0175940:intron | 30.0% |
| !!! | GAGGGTATTGTCTATTTTTA+TGG | - | chr1_4:62093114-62093133 | Msa0175940:intron | 30.0% |
| AGAAATTATTAGTGACGAAC+AGG | + | chr1_4:62093729-62093748 | None:intergenic | 30.0% | |
| ! | CATAGATACGATGGTTTTTA+AGG | - | chr1_4:62093797-62093816 | Msa0175940:intron | 30.0% |
| TTATACCATGCAAAACCATT+AGG | + | chr1_4:62094078-62094097 | None:intergenic | 30.0% | |
| AAGATAAAGATATCAGACAG+AGG | - | chr1_4:62094159-62094178 | Msa0175940:intron | 30.0% | |
| TATGCAAAGAATTTGATTGC+TGG | + | chr1_4:62094267-62094286 | None:intergenic | 30.0% | |
| !! | TTTGATAGCAGATGTTTTAC+GGG | - | chr1_4:62094292-62094311 | Msa0175940:intron | 30.0% |
| !! | CTCATACATTTGCTGAATTT+TGG | - | chr1_4:62094488-62094507 | Msa0175940:intron | 30.0% |
| TTTGGAGATCTTTATTGTAG+TGG | - | chr1_4:62094549-62094568 | Msa0175940:intron | 30.0% | |
| TTGGAGATCTTTATTGTAGT+GGG | - | chr1_4:62094550-62094569 | Msa0175940:intron | 30.0% | |
| GAGAAGAAATCCTGTAAAAA+CGG | + | chr1_4:62094609-62094628 | None:intergenic | 30.0% | |
| TGACTCATATCTTCAATTAC+TGG | - | chr1_4:62094775-62094794 | Msa0175940:intron | 30.0% | |
| TTATTTGCAGTGATAGCAAT+TGG | - | chr1_4:62094822-62094841 | Msa0175940:five_prime_UTR | 30.0% | |
| TATTTGCAGTGATAGCAATT+GGG | - | chr1_4:62094823-62094842 | Msa0175940:five_prime_UTR | 30.0% | |
| GGAATTAAGAATTCACTTGT+GGG | - | chr1_4:62094844-62094863 | Msa0175940:five_prime_UTR | 30.0% | |
| ! | GTTTATTGGCTGTCATTATT+CGG | - | chr1_4:62094918-62094937 | Msa0175940:five_prime_UTR | 30.0% |
| AAGAGAAGAGAAGAAGAAGT+TGG | + | chr1_4:62089226-62089245 | None:intergenic | 35.0% | |
| GAGAAAAAAAGTGAATACGG+CGG | + | chr1_4:62089258-62089277 | None:intergenic | 35.0% | |
| AGAGAGTTACATAGCAGTAA+TGG | + | chr1_4:62089298-62089317 | None:intergenic | 35.0% | |
| GAGATAGATATACCTTGTGA+AGG | + | chr1_4:62089514-62089533 | None:intergenic | 35.0% | |
| AGAGAGAAAACAGATCAGAT+CGG | + | chr1_4:62089539-62089558 | None:intergenic | 35.0% | |
| TCTCTCTCTGTAATGTACAT+AGG | - | chr1_4:62089552-62089571 | Msa0175940:three_prime_UTR | 35.0% | |
| ! | GCGAGCATTGTAAAGAATTA+GGG | + | chr1_4:62089597-62089616 | None:intergenic | 35.0% |
| AAAAATCACATCGGCATAAC+AGG | + | chr1_4:62089681-62089700 | None:intergenic | 35.0% | |
| ! | TTTTCAACGTGTAACCAAAC+AGG | - | chr1_4:62089956-62089975 | Msa0175940:intron | 35.0% |
| TTTCAACGTGTAACCAAACA+GGG | - | chr1_4:62089957-62089976 | Msa0175940:intron | 35.0% | |
| ATTAAACCTAAGTCCCTGTT+TGG | + | chr1_4:62089973-62089992 | None:intergenic | 35.0% | |
| AAACAGGGACTTAGGTTTAA+TGG | - | chr1_4:62089972-62089991 | Msa0175940:intron | 35.0% | |
| GCGCTAAATAAATACCATAC+GGG | + | chr1_4:62090155-62090174 | None:intergenic | 35.0% | |
| !!! | TTTTTCGTAGTGGATACTGA+AGG | - | chr1_4:62090276-62090295 | Msa0175940:intron | 35.0% |
| !!! | TTTTCGTAGTGGATACTGAA+GGG | - | chr1_4:62090277-62090296 | Msa0175940:intron | 35.0% |
| ! | TAAGCTTTTGTGTTAGTGAG+AGG | - | chr1_4:62090412-62090431 | Msa0175940:intron | 35.0% |
| GATACATAATAGCGGTATAG+CGG | + | chr1_4:62090714-62090733 | None:intergenic | 35.0% | |
| GCTATACCGCTATTATGTAT+CGG | - | chr1_4:62090713-62090732 | Msa0175940:intron | 35.0% | |
| CTATACCGCTATTATGTATC+GGG | - | chr1_4:62090714-62090733 | Msa0175940:intron | 35.0% | |
| GAAATCCCGATACATAATAG+CGG | + | chr1_4:62090722-62090741 | None:intergenic | 35.0% | |
| ! | TTTTTGCATATCGGAGATAG+CGG | - | chr1_4:62090804-62090823 | Msa0175940:CDS | 35.0% |
| TTTCACTTTACCTAGGTCTT+GGG | + | chr1_4:62090981-62091000 | None:intergenic | 35.0% | |
| ! | TTTTCACTTTACCTAGGTCT+TGG | + | chr1_4:62090982-62091001 | None:intergenic | 35.0% |
| !! | AAAGAGTTTTAGTGATCGAG+AGG | + | chr1_4:62091005-62091024 | None:intergenic | 35.0% |
| TATGAAGTGAAGAGAGAAAG+TGG | + | chr1_4:62091035-62091054 | None:intergenic | 35.0% | |
| !!! | TATTTCCCATAGCGGATTTT+TGG | - | chr1_4:62091218-62091237 | Msa0175940:intron | 35.0% |
| !!! | AACATACGTTGGCTTTTCTA+CGG | + | chr1_4:62091348-62091367 | None:intergenic | 35.0% |
| TAGAAAAGCCAACGTATGTT+AGG | - | chr1_4:62091348-62091367 | Msa0175940:intron | 35.0% | |
| !! | ACTGATTTTCAGTCACAATC+TGG | - | chr1_4:62091428-62091447 | Msa0175940:intron | 35.0% |
| ATTCATTATTGCGTGACAAC+TGG | + | chr1_4:62091463-62091482 | None:intergenic | 35.0% | |
| !!! | ATGAGTCTCACTTTGGTTTT+TGG | + | chr1_4:62091705-62091724 | None:intergenic | 35.0% |
| ATTGTTCCTAATGGTTCTTG+TGG | - | chr1_4:62091723-62091742 | Msa0175940:intron | 35.0% | |
| ! | GTTCTTGTGGTGGAATAATT+GGG | - | chr1_4:62091736-62091755 | Msa0175940:intron | 35.0% |
| GTTGTCTCTTATATGAATGC+TGG | - | chr1_4:62091913-62091932 | Msa0175940:CDS | 35.0% | |
| ! | TCAGAGCTTTTATATCCCTA+TGG | - | chr1_4:62091946-62091965 | Msa0175940:intron | 35.0% |
| ATGCGATGAAAAATAACAGC+CGG | + | chr1_4:62092018-62092037 | None:intergenic | 35.0% | |
| TCAATGAATGACCTGATCAA+AGG | + | chr1_4:62092109-62092128 | None:intergenic | 35.0% | |
| TTCATTGAAGAATCTCAAGC+TGG | - | chr1_4:62092121-62092140 | Msa0175940:intron | 35.0% | |
| CTCATGGAATGTGAATAATG+AGG | + | chr1_4:62092271-62092290 | None:intergenic | 35.0% | |
| CACTGACCAGAATATGTAAA+TGG | + | chr1_4:62092298-62092317 | None:intergenic | 35.0% | |
| AATGTACAAGAGATATTCCG+TGG | + | chr1_4:62092334-62092353 | None:intergenic | 35.0% | |
| !! | ATACTTTGGAGCACCTAATA+TGG | - | chr1_4:62092376-62092395 | Msa0175940:CDS | 35.0% |
| ! | TGCTTTCTTTTTAATGAGCC+GGG | - | chr1_4:62092599-62092618 | Msa0175940:CDS | 35.0% |
| CAATCAGAAGAAAGACAGAT+GGG | + | chr1_4:62092625-62092644 | None:intergenic | 35.0% | |
| ACAATCAGAAGAAAGACAGA+TGG | + | chr1_4:62092626-62092645 | None:intergenic | 35.0% | |
| TTATACATCAGGGACAGTAA+TGG | - | chr1_4:62092655-62092674 | Msa0175940:CDS | 35.0% | |
| ! | CATTTCGTTTTCACCAGATA+AGG | - | chr1_4:62092818-62092837 | Msa0175940:intron | 35.0% |
| TACTCTTTCAGAACAACAAC+CGG | + | chr1_4:62092961-62092980 | None:intergenic | 35.0% | |
| CTGAAAGAGTAATAGTGGTA+AGG | - | chr1_4:62092970-62092989 | Msa0175940:intron | 35.0% | |
| !! | TCTTGGTGATAGTGTGATTT+TGG | - | chr1_4:62093000-62093019 | Msa0175940:intron | 35.0% |
| !! | CATTTTAGGTGCTTATGTCT+CGG | - | chr1_4:62093226-62093245 | Msa0175940:intron | 35.0% |
| !! | ATTTTAGGTGCTTATGTCTC+GGG | - | chr1_4:62093227-62093246 | Msa0175940:intron | 35.0% |
| ! | GATGGAAGCACATATGTATA+TGG | + | chr1_4:62093266-62093285 | None:intergenic | 35.0% |
| AATTACAGACCTAATGGTAC+TGG | - | chr1_4:62093314-62093333 | Msa0175940:intron | 35.0% | |
| AGTGTTCACAGAACTTCATA+TGG | - | chr1_4:62093637-62093656 | Msa0175940:intron | 35.0% | |
| ATGAATGGATGCTAACATGT+TGG | - | chr1_4:62093752-62093771 | Msa0175940:intron | 35.0% | |
| ATGCTAACATGTTGGATGAT+TGG | - | chr1_4:62093760-62093779 | Msa0175940:intron | 35.0% | |
| TAACATGTTGGATGATTGGA+AGG | - | chr1_4:62093764-62093783 | Msa0175940:intron | 35.0% | |
| !! | TGTAACTTTTGTTGTCTTCC+AGG | - | chr1_4:62093941-62093960 | Msa0175940:intron | 35.0% |
| !!! | TTTTTTCCCTTTCAGACTAG+TGG | - | chr1_4:62094132-62094151 | Msa0175940:intron | 35.0% |
| ! | ACATATCTGGAACAACTGAT+AGG | - | chr1_4:62094187-62094206 | Msa0175940:intron | 35.0% |
| TCGTTATACTTGAGGGATAA+GGG | + | chr1_4:62094241-62094260 | None:intergenic | 35.0% | |
| TTCGTTATACTTGAGGGATA+AGG | + | chr1_4:62094242-62094261 | None:intergenic | 35.0% | |
| GGTAACTTTCCTGTATAACA+AGG | + | chr1_4:62094329-62094348 | None:intergenic | 35.0% | |
| TACAGGAAAGTTACCATAAC+AGG | - | chr1_4:62094334-62094353 | Msa0175940:intron | 35.0% | |
| TGAATCTATGATACTGCAGA+AGG | - | chr1_4:62094381-62094400 | Msa0175940:intron | 35.0% | |
| AAATTACTACTCCACTCTCT+CGG | + | chr1_4:62094419-62094438 | None:intergenic | 35.0% | |
| CTTGTCTACTGTTAGATTCT+TGG | - | chr1_4:62094448-62094467 | Msa0175940:intron | 35.0% | |
| ! | ATCTTTATTGTAGTGGGAGA+GGG | - | chr1_4:62094556-62094575 | Msa0175940:CDS | 35.0% |
| GGGAATTAAGAATTCACTTG+TGG | - | chr1_4:62094843-62094862 | Msa0175940:five_prime_UTR | 35.0% | |
| TAATCTGATGGCTTGATCAA+TGG | - | chr1_4:62094980-62094999 | Msa0175940:five_prime_UTR | 35.0% | |
| TTGATCAATGGTTAGAAGTG+TGG | - | chr1_4:62094992-62095011 | Msa0175940:five_prime_UTR | 35.0% | |
| CAAAACAAAACGTGACGTTG+CGG | - | chr1_4:62089160-62089179 | Msa0175940:three_prime_UTR | 40.0% | |
| !! | TTTCTCTCTCTCTGAAACGA+AGG | - | chr1_4:62089353-62089372 | Msa0175940:three_prime_UTR | 40.0% |
| GAAACGAAGGAGTGAGAATT+AGG | - | chr1_4:62089366-62089385 | Msa0175940:three_prime_UTR | 40.0% | |
| GATGACACGTAAGAAGATTC+AGG | + | chr1_4:62089445-62089464 | None:intergenic | 40.0% | |
| ATACCTTGTGAAGGTGAATC+AGG | + | chr1_4:62089505-62089524 | None:intergenic | 40.0% | |
| ! | CGCGAGCATTGTAAAGAATT+AGG | + | chr1_4:62089598-62089617 | None:intergenic | 40.0% |
| ! | TTGGTATCACAGTGAGTTGA+CGG | - | chr1_4:62090179-62090198 | Msa0175940:intron | 40.0% |
| CACAAATGTGTGAAGTGTGA+AGG | + | chr1_4:62090446-62090465 | None:intergenic | 40.0% | |
| !!! | TTGTCGTTTTCTTGCTTGCT+AGG | - | chr1_4:62090482-62090501 | Msa0175940:intron | 40.0% |
| ! | GTACAAAAGTACGTTGTTCC+TGG | - | chr1_4:62090554-62090573 | Msa0175940:intron | 40.0% |
| ACATGGATAATCGGTGTAGT+TGG | + | chr1_4:62090670-62090689 | None:intergenic | 40.0% | |
| GCAAGATCACAATACCGTAT+GGG | + | chr1_4:62090763-62090782 | None:intergenic | 40.0% | |
| AGCAAGATCACAATACCGTA+TGG | + | chr1_4:62090764-62090783 | None:intergenic | 40.0% | |
| ! | AGCCGTGGATTTTTGCATAT+CGG | - | chr1_4:62090795-62090814 | Msa0175940:CDS | 40.0% |
| CTCCGATATGCAAAAATCCA+CGG | + | chr1_4:62090800-62090819 | None:intergenic | 40.0% | |
| AGCGGTTATTGCTTACATAG+CGG | - | chr1_4:62090822-62090841 | Msa0175940:intron | 40.0% | |
| TTCACTTTACCTAGGTCTTG+GGG | + | chr1_4:62090980-62090999 | None:intergenic | 40.0% | |
| ! | GAGAGGTTTTCACTTTACCT+AGG | + | chr1_4:62090988-62091007 | None:intergenic | 40.0% |
| AAATCCGCTATGGGAAATAG+CGG | + | chr1_4:62091217-62091236 | None:intergenic | 40.0% | |
| GATCACCAAAAATCCGCTAT+GGG | + | chr1_4:62091226-62091245 | None:intergenic | 40.0% | |
| ! | TAGCGGATCGTGGAAAATAT+CGG | + | chr1_4:62091248-62091267 | None:intergenic | 40.0% |
| !! | GTGTTATTAATAGCGGATCG+TGG | + | chr1_4:62091258-62091277 | None:intergenic | 40.0% |
| ACCAGAAACCTAACATACGT+TGG | + | chr1_4:62091359-62091378 | None:intergenic | 40.0% | |
| !! | TGCTGGTTCTGTTATTGGAA+AGG | - | chr1_4:62091391-62091410 | Msa0175940:intron | 40.0% |
| !! | GCTGGTTCTGTTATTGGAAA+GGG | - | chr1_4:62091392-62091411 | Msa0175940:intron | 40.0% |
| CGCAATAATGAATTCTTCCC+TGG | - | chr1_4:62091470-62091489 | Msa0175940:intron | 40.0% | |
| AACCACTGATCGGATTATCA+TGG | - | chr1_4:62091493-62091512 | Msa0175940:intron | 40.0% | |
| TACCATGATAATCCGATCAG+TGG | + | chr1_4:62091498-62091517 | None:intergenic | 40.0% | |
| GATCGGATTATCATGGTATC+TGG | - | chr1_4:62091500-62091519 | Msa0175940:intron | 40.0% | |
| TCTTTCAAAGTTGCTCAGTG+AGG | - | chr1_4:62091559-62091578 | Msa0175940:intron | 40.0% | |
| AGGAACAATGAGTCTCACTT+TGG | + | chr1_4:62091712-62091731 | None:intergenic | 40.0% | |
| GTGAGACTCATTGTTCCTAA+TGG | - | chr1_4:62091714-62091733 | Msa0175940:intron | 40.0% | |
| ATTCCACCACAAGAACCATT+AGG | + | chr1_4:62091732-62091751 | None:intergenic | 40.0% | |
| ! | GGTTCTTGTGGTGGAATAAT+TGG | - | chr1_4:62091735-62091754 | Msa0175940:intron | 40.0% |
| ! | TTGTGGTGGAATAATTGGGA+AGG | - | chr1_4:62091740-62091759 | Msa0175940:intron | 40.0% |
| ! | TGTGGTGGAATAATTGGGAA+GGG | - | chr1_4:62091741-62091760 | Msa0175940:intron | 40.0% |
| AGCATATGTTATTGTCAGGC+CGG | - | chr1_4:62091996-62092015 | Msa0175940:intron | 40.0% | |
| !!! | GGCTGTTATTTTTCATCGCA+TGG | - | chr1_4:62092017-62092036 | Msa0175940:intron | 40.0% |
| GATAGGATAGTAACAGTGAC+AGG | - | chr1_4:62092187-62092206 | Msa0175940:intron | 40.0% | |
| TACATAAACAGGGCTAATGG+AGG | + | chr1_4:62092445-62092464 | None:intergenic | 40.0% | |
| CCATACATAAACAGGGCTAA+TGG | + | chr1_4:62092448-62092467 | None:intergenic | 40.0% | |
| CCATTAGCCCTGTTTATGTA+TGG | - | chr1_4:62092445-62092464 | Msa0175940:intron | 40.0% | |
| AAAGAAGACTGTAATCCCAG+GGG | + | chr1_4:62092472-62092491 | None:intergenic | 40.0% | |
| GAAAGAAGACTGTAATCCCA+GGG | + | chr1_4:62092473-62092492 | None:intergenic | 40.0% | |
| TGAAAGAAGACTGTAATCCC+AGG | + | chr1_4:62092474-62092493 | None:intergenic | 40.0% | |
| TACCTTCACAGAGATACACA+CGG | + | chr1_4:62092740-62092759 | None:intergenic | 40.0% | |
| !! | AATCACGGGTGTTACTCAAA+TGG | + | chr1_4:62092789-62092808 | None:intergenic | 40.0% |
| AGTGGTAAGGATCATACTCT+TGG | - | chr1_4:62092983-62093002 | Msa0175940:intron | 40.0% | |
| GTATTACGCTAAAAAGGTCG+AGG | - | chr1_4:62093022-62093041 | Msa0175940:intron | 40.0% | |
| TCGAGGCCCAATACTAATTA+TGG | - | chr1_4:62093039-62093058 | Msa0175940:intron | 40.0% | |
| TAATTCACTCCGTTGTATGC+TGG | + | chr1_4:62093299-62093318 | None:intergenic | 40.0% | |
| GGAGTGAATTACAGACCTAA+TGG | - | chr1_4:62093308-62093327 | Msa0175940:intron | 40.0% | |
| AACTTTGCTCCAGTACCATT+AGG | + | chr1_4:62093326-62093345 | None:intergenic | 40.0% | |
| TGTGTGTGTGTTTGAAAGCT+TGG | + | chr1_4:62093417-62093436 | None:intergenic | 40.0% | |
| TAAAGGGGAATGTAGAGACA+GGG | - | chr1_4:62093559-62093578 | Msa0175940:intron | 40.0% | |
| CATGTGCCAAAAACACAAAC+TGG | + | chr1_4:62093706-62093725 | None:intergenic | 40.0% | |
| TGTTGGATGATTGGAAGGAA+AGG | - | chr1_4:62093769-62093788 | Msa0175940:intron | 40.0% | |
| AAGGTGATGCATAGATACGA+TGG | - | chr1_4:62093788-62093807 | Msa0175940:intron | 40.0% | |
| TTAGGGCAAGCAACATTACA+AGG | + | chr1_4:62093896-62093915 | None:intergenic | 40.0% | |
| !! | AACTTTTGTTGTCTTCCAGG+AGG | - | chr1_4:62093944-62093963 | Msa0175940:intron | 40.0% |
| TGCAGATGAGCATATAGGAT+TGG | - | chr1_4:62093995-62094014 | Msa0175940:intron | 40.0% | |
| !! | GAGCATATAGGATTGGTTGT+TGG | - | chr1_4:62094002-62094021 | Msa0175940:intron | 40.0% |
| TCAGGTTTACCAATGCCTAA+TGG | - | chr1_4:62094060-62094079 | Msa0175940:intron | 40.0% | |
| CATGCAAAACCATTAGGCAT+TGG | + | chr1_4:62094072-62094091 | None:intergenic | 40.0% | |
| !! | CAATGCCTAATGGTTTTGCA+TGG | - | chr1_4:62094070-62094089 | Msa0175940:intron | 40.0% |
| ! | TTTGCTCCACTAGTCTGAAA+GGG | + | chr1_4:62094141-62094160 | None:intergenic | 40.0% |
| TATACTTGAGGGATAAGGGA+AGG | + | chr1_4:62094237-62094256 | None:intergenic | 40.0% | |
| ! | CTGGCTTTCGTTATACTTGA+GGG | + | chr1_4:62094248-62094267 | None:intergenic | 40.0% |
| ! | GATCTTTATTGTAGTGGGAG+AGG | - | chr1_4:62094555-62094574 | Msa0175940:CDS | 40.0% |
| !! | CGAACTTAGACCGTTTTTAC+AGG | - | chr1_4:62094596-62094615 | Msa0175940:CDS | 40.0% |
| ! | TTCAATTACTGGCCTGAGAT+AGG | - | chr1_4:62094786-62094805 | Msa0175940:intron | 40.0% |
| TAACTCTCAGATCCTATCTC+AGG | + | chr1_4:62094801-62094820 | None:intergenic | 40.0% | |
| ! | CATCACAACTTGAAGGTGTA+GGG | + | chr1_4:62094879-62094898 | None:intergenic | 40.0% |
| ! | ACATCACAACTTGAAGGTGT+AGG | + | chr1_4:62094880-62094899 | None:intergenic | 40.0% |
| !! | AGAAGAAGAAGTTGGTGCTG+CGG | + | chr1_4:62089218-62089237 | None:intergenic | 45.0% |
| TCGTCGCTGAAGAACAACAA+TGG | - | chr1_4:62089414-62089433 | Msa0175940:three_prime_UTR | 45.0% | |
| TCTTACGTGTCATCTCCAGA+AGG | - | chr1_4:62089451-62089470 | Msa0175940:three_prime_UTR | 45.0% | |
| ACAAACACGCCGTAAGAAAC+AGG | + | chr1_4:62089892-62089911 | None:intergenic | 45.0% | |
| GTGTAACCAAACAGGGACTT+AGG | - | chr1_4:62089964-62089983 | Msa0175940:intron | 45.0% | |
| ! | TGGTATCACAGTGAGTTGAC+GGG | - | chr1_4:62090180-62090199 | Msa0175940:intron | 45.0% |
| ACGTGCACACACTTAGAGTT+GGG | - | chr1_4:62090217-62090236 | Msa0175940:intron | 45.0% | |
| AAAATCCACGGCTATTGCAG+CGG | + | chr1_4:62090788-62090807 | None:intergenic | 45.0% | |
| ACTATCATGTGAGCTGCACA+TGG | - | chr1_4:62090888-62090907 | Msa0175940:intron | 45.0% | |
| ATGCTGAATCGGTGATGAGA+TGG | - | chr1_4:62090941-62090960 | Msa0175940:intron | 45.0% | |
| TGCTGAATCGGTGATGAGAT+GGG | - | chr1_4:62090942-62090961 | Msa0175940:intron | 45.0% | |
| AGTGAAGAGAGAAAGTGGAG+AGG | + | chr1_4:62091030-62091049 | None:intergenic | 45.0% | |
| !! | GAAATAGCGGATAGTGTAGC+AGG | + | chr1_4:62091204-62091223 | None:intergenic | 45.0% |
| ! | CTATCCGCTATTTCCCATAG+CGG | - | chr1_4:62091210-62091229 | Msa0175940:intron | 45.0% |
| GGATCACCAAAAATCCGCTA+TGG | + | chr1_4:62091227-62091246 | None:intergenic | 45.0% | |
| GCCAACGTATGTTAGGTTTC+TGG | - | chr1_4:62091355-62091374 | Msa0175940:intron | 45.0% | |
| !! | TCTGCTGCTGGTTCTGTTAT+TGG | - | chr1_4:62091386-62091405 | Msa0175940:intron | 45.0% |
| GGTTCTGTTATTGGAAAGGG+TGG | - | chr1_4:62091395-62091414 | Msa0175940:intron | 45.0% | |
| TAATCCGATCAGTGGTTCCA+GGG | + | chr1_4:62091490-62091509 | None:intergenic | 45.0% | |
| ATAATCCGATCAGTGGTTCC+AGG | + | chr1_4:62091491-62091510 | None:intergenic | 45.0% | |
| !! | ATATGATTAGCTTCACGGCG+AGG | - | chr1_4:62091662-62091681 | Msa0175940:intron | 45.0% |
| GTTCCTAATGGTTCTTGTGG+TGG | - | chr1_4:62091726-62091745 | Msa0175940:intron | 45.0% | |
| ! | TTTAGTTGCAGGGGAAGCAT+AGG | + | chr1_4:62091972-62091991 | None:intergenic | 45.0% |
| AGTAACAGTGACAGGAACTC+TGG | - | chr1_4:62092195-62092214 | Msa0175940:intron | 45.0% | |
| CTACTGCCTTCGTCCATATT+AGG | + | chr1_4:62092392-62092411 | None:intergenic | 45.0% | |
| CAGGGGTCCATACATAAACA+GGG | + | chr1_4:62092455-62092474 | None:intergenic | 45.0% | |
| CTGTTTATGTATGGACCCCT+GGG | - | chr1_4:62092454-62092473 | Msa0175940:intron | 45.0% | |
| TCTTCTTTCACCTTCGTTGC+AGG | - | chr1_4:62092484-62092503 | Msa0175940:intron | 45.0% | |
| CATCAGGGACAGTAATGGTA+AGG | - | chr1_4:62092660-62092679 | Msa0175940:CDS | 45.0% | |
| ATCCGTGTGTATCTCTGTGA+AGG | - | chr1_4:62092735-62092754 | Msa0175940:intron | 45.0% | |
| ! | CTTTTCTCACTAAGTGGGGT+CGG | + | chr1_4:62092937-62092956 | None:intergenic | 45.0% |
| ! | CGGTCTTTTCTCACTAAGTG+GGG | + | chr1_4:62092941-62092960 | None:intergenic | 45.0% |
| ! | CCGGTCTTTTCTCACTAAGT+GGG | + | chr1_4:62092942-62092961 | None:intergenic | 45.0% |
| CCCACTTAGTGAGAAAAGAC+CGG | - | chr1_4:62092939-62092958 | Msa0175940:intron | 45.0% | |
| ! | ACCGGTCTTTTCTCACTAAG+TGG | + | chr1_4:62092943-62092962 | None:intergenic | 45.0% |
| TGCTTATGTCTCGGGTTATC+AGG | - | chr1_4:62093235-62093254 | Msa0175940:intron | 45.0% | |
| GCTTATGTCTCGGGTTATCA+GGG | - | chr1_4:62093236-62093255 | Msa0175940:intron | 45.0% | |
| AGCAAAGTTCCAGAACAGCA+AGG | - | chr1_4:62093337-62093356 | Msa0175940:intron | 45.0% | |
| !! | TGAGGAAAACCTTGCTGTTC+TGG | + | chr1_4:62093349-62093368 | None:intergenic | 45.0% |
| CTAAAGGGGAATGTAGAGAC+AGG | - | chr1_4:62093558-62093577 | Msa0175940:intron | 45.0% | |
| !! | AGGGTGCCAGTTTGTGTTTT+TGG | - | chr1_4:62093697-62093716 | Msa0175940:intron | 45.0% |
| CGAAGCAACTCAATGACCAT+TGG | - | chr1_4:62093969-62093988 | Msa0175940:intron | 45.0% | |
| ATGCTCATCTGCAACACCAA+TGG | + | chr1_4:62093988-62094007 | None:intergenic | 45.0% | |
| ! | GGTGTTGCAGATGAGCATAT+AGG | - | chr1_4:62093990-62094009 | Msa0175940:intron | 45.0% |
| ! | CTTTGCTCCACTAGTCTGAA+AGG | + | chr1_4:62094142-62094161 | None:intergenic | 45.0% |
| GACAGAGGCGATTACATATC+TGG | - | chr1_4:62094174-62094193 | Msa0175940:intron | 45.0% | |
| !! | GCTGGCTTTCGTTATACTTG+AGG | + | chr1_4:62094249-62094268 | None:intergenic | 45.0% |
| ATCGCAGAGAGCAATTCGTA+CGG | - | chr1_4:62094357-62094376 | Msa0175940:intron | 45.0% | |
| !! | GGACAATCCTTTTGCTATCC+TGG | - | chr1_4:62094745-62094764 | Msa0175940:intron | 45.0% |
| GCACACACATCACAACTTGA+AGG | + | chr1_4:62094886-62094905 | None:intergenic | 45.0% | |
| !!! | TTGTTATTAAATATAAAATA+TGG | - | chr1_4:62090333-62090352 | Msa0175940:intron | 5.0% |
| ATTCTGCTGCGTTGTGTGTG+AGG | + | chr1_4:62089124-62089143 | None:intergenic | 50.0% | |
| AACAAAACGTGACGTTGCGG+TGG | - | chr1_4:62089163-62089182 | Msa0175940:three_prime_UTR | 50.0% | |
| ACAAAACGTGACGTTGCGGT+GGG | - | chr1_4:62089164-62089183 | Msa0175940:three_prime_UTR | 50.0% | |
| TGTGAAGGTGAATCAGGAGG+AGG | + | chr1_4:62089499-62089518 | None:intergenic | 50.0% | |
| CCTTGTGAAGGTGAATCAGG+AGG | + | chr1_4:62089502-62089521 | None:intergenic | 50.0% | |
| CCTCCTGATTCACCTTCACA+AGG | - | chr1_4:62089499-62089518 | Msa0175940:three_prime_UTR | 50.0% | |
| ! | CAGTGAGTTGACGGGAATCA+CGG | - | chr1_4:62090188-62090207 | Msa0175940:intron | 50.0% |
| CAACTCTAAGTGTGTGCACG+TGG | + | chr1_4:62090218-62090237 | None:intergenic | 50.0% | |
| CACGTGCACACACTTAGAGT+TGG | - | chr1_4:62090216-62090235 | Msa0175940:intron | 50.0% | |
| AACCGCGACGAAATCCCATA+CGG | - | chr1_4:62090746-62090765 | Msa0175940:CDS | 50.0% | |
| TACCGTATGGGATTTCGTCG+CGG | + | chr1_4:62090751-62090770 | None:intergenic | 50.0% | |
| GCTGAATCGGTGATGAGATG+GGG | - | chr1_4:62090943-62090962 | Msa0175940:intron | 50.0% | |
| CTGAATCGGTGATGAGATGG+GGG | - | chr1_4:62090944-62090963 | Msa0175940:intron | 50.0% | |
| CGTATGTAACCCCAAGACCT+AGG | - | chr1_4:62090968-62090987 | Msa0175940:intron | 50.0% | |
| CTGGTATCAAACTCTGCTGC+TGG | - | chr1_4:62091374-62091393 | Msa0175940:intron | 50.0% | |
| TCTTCCCTGGAACCACTGAT+CGG | - | chr1_4:62091483-62091502 | Msa0175940:intron | 50.0% | |
| GGTGGAATAATTGGGAAGGG+AGG | - | chr1_4:62091744-62091763 | Msa0175940:intron | 50.0% | |
| ! | GGAGCACCTAATATGGACGA+AGG | - | chr1_4:62092383-62092402 | Msa0175940:intron | 50.0% |
| CCAGGGGTCCATACATAAAC+AGG | + | chr1_4:62092456-62092475 | None:intergenic | 50.0% | |
| CCTGTTTATGTATGGACCCC+TGG | - | chr1_4:62092453-62092472 | Msa0175940:intron | 50.0% | |
| CTTTCACCTTCGTTGCAGGA+AGG | - | chr1_4:62092488-62092507 | Msa0175940:intron | 50.0% | |
| CTACTTCCTTCCTGCAACGA+AGG | + | chr1_4:62092497-62092516 | None:intergenic | 50.0% | |
| CGTTGCAGGAAGGAAGTAGA+TGG | - | chr1_4:62092498-62092517 | Msa0175940:CDS | 50.0% | |
| TGCAGGAAGGAAGTAGATGG+AGG | - | chr1_4:62092501-62092520 | Msa0175940:CDS | 50.0% | |
| AGAAGAAAGACAGATGGGCC+CGG | + | chr1_4:62092620-62092639 | None:intergenic | 50.0% | |
| CTAAGTGGGGTCGGTTACAT+GGG | + | chr1_4:62092928-62092947 | None:intergenic | 50.0% | |
| ACTAAGTGGGGTCGGTTACA+TGG | + | chr1_4:62092929-62092948 | None:intergenic | 50.0% | |
| ! | TATGCTGGTGGTGCAACAGA+TGG | + | chr1_4:62093284-62093303 | None:intergenic | 50.0% |
| GTTGCACCACCAGCATACAA+CGG | - | chr1_4:62093287-62093306 | Msa0175940:intron | 50.0% | |
| TTCACTCCGTTGTATGCTGG+TGG | + | chr1_4:62093296-62093315 | None:intergenic | 50.0% | |
| ! | TTGAGTTGCTTCGATCCTCC+TGG | + | chr1_4:62093962-62093981 | None:intergenic | 50.0% |
| !! | ATAGGATTGGTTGTTGGCCG+CGG | - | chr1_4:62094008-62094027 | Msa0175940:intron | 50.0% |
| CCGATATATTCCTTCCACCG+CGG | + | chr1_4:62094028-62094047 | None:intergenic | 50.0% | |
| CCGCGGTGGAAGGAATATAT+CGG | - | chr1_4:62094025-62094044 | Msa0175940:intron | 50.0% | |
| TGCTCTCTGCGATCCTGTTA+TGG | + | chr1_4:62094350-62094369 | None:intergenic | 50.0% | |
| TGCTTATGCTACCGAGAGAG+TGG | - | chr1_4:62094405-62094424 | Msa0175940:intron | 50.0% | |
| AATGTATGAGCAGCGCAAGC+AGG | + | chr1_4:62094478-62094497 | None:intergenic | 50.0% | |
| ! | TTATTGTAGTGGGAGAGGGC+AGG | - | chr1_4:62094560-62094579 | Msa0175940:CDS | 50.0% |
| ACTGCTGCCAGGATAGCAAA+AGG | + | chr1_4:62094755-62094774 | None:intergenic | 50.0% | |
| GATATGAGTCAACTGCTGCC+AGG | + | chr1_4:62094766-62094785 | None:intergenic | 50.0% | |
| TGTCATCTCCAGAAGGACCG+AGG | - | chr1_4:62089458-62089477 | Msa0175940:three_prime_UTR | 55.0% | |
| ! | GGTGAAGAAGCGTGCTTCCT+CGG | + | chr1_4:62089478-62089497 | None:intergenic | 55.0% |
| ! | CAGGGGAAGCATAGGCCATA+GGG | + | chr1_4:62091964-62091983 | None:intergenic | 55.0% |
| ACTCTGGATGAGCAGATGCG+TGG | - | chr1_4:62092211-62092230 | Msa0175940:intron | 55.0% | |
| TGCTACCGCTGCAATAGCCG+TGG | - | chr1_4:62090780-62090799 | Msa0175940:CDS | 60.0% | |
| !! | GGAAGGGAGGTGCTACCATC+AGG | - | chr1_4:62091757-62091776 | Msa0175940:intron | 60.0% |
| ! | GCAGGGGAAGCATAGGCCAT+AGG | + | chr1_4:62091965-62091984 | None:intergenic | 60.0% |
| GCGTGCTTCCTCGGTCCTTC+TGG | + | chr1_4:62089469-62089488 | None:intergenic | 65.0% | |
| !! | GGATTGGTTGTTGGCCGCGG+TGG | - | chr1_4:62094011-62094030 | Msa0175940:intron | 65.0% |
| TGGTTGTTGGCCGCGGTGGA+AGG | - | chr1_4:62094015-62094034 | Msa0175940:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 62089056 | 62095017 | 62089056 | ID=Msa0175940;Name=Msa0175940 |
| chr1_4 | mRNA | 62089056 | 62095017 | 62089056 | ID=Msa0175940-mRNA-1;Parent=Msa0175940;Name=Msa0175940-mRNA-1;_AED=0.06;_eAED=0.06;_QI=262|1|1|1|0.87|0.77|9|585|334 |
| chr1_4 | exon | 62089056 | 62089734 | 62089056 | ID=Msa0175940-mRNA-1:exon:19938;Parent=Msa0175940-mRNA-1 |
| chr1_4 | exon | 62089865 | 62089926 | 62089865 | ID=Msa0175940-mRNA-1:exon:19937;Parent=Msa0175940-mRNA-1 |
| chr1_4 | exon | 62090015 | 62090110 | 62090015 | ID=Msa0175940-mRNA-1:exon:19936;Parent=Msa0175940-mRNA-1 |
| chr1_4 | exon | 62090715 | 62090839 | 62090715 | ID=Msa0175940-mRNA-1:exon:19935;Parent=Msa0175940-mRNA-1 |
| chr1_4 | exon | 62091763 | 62091956 | 62091763 | ID=Msa0175940-mRNA-1:exon:19934;Parent=Msa0175940-mRNA-1 |
| chr1_4 | exon | 62092295 | 62092401 | 62092295 | ID=Msa0175940-mRNA-1:exon:19933;Parent=Msa0175940-mRNA-1 |
| chr1_4 | exon | 62092493 | 62092731 | 62092493 | ID=Msa0175940-mRNA-1:exon:19932;Parent=Msa0175940-mRNA-1 |
| chr1_4 | exon | 62094553 | 62094698 | 62094553 | ID=Msa0175940-mRNA-1:exon:19931;Parent=Msa0175940-mRNA-1 |
| chr1_4 | exon | 62094814 | 62095017 | 62094814 | ID=Msa0175940-mRNA-1:exon:19930;Parent=Msa0175940-mRNA-1 |
| chr1_4 | five_prime_UTR | 62094814 | 62095017 | 62094814 | ID=Msa0175940-mRNA-1:five_prime_utr;Parent=Msa0175940-mRNA-1 |
| chr1_4 | five_prime_UTR | 62094641 | 62094698 | 62094641 | ID=Msa0175940-mRNA-1:five_prime_utr;Parent=Msa0175940-mRNA-1 |
| chr1_4 | CDS | 62094553 | 62094640 | 62094553 | ID=Msa0175940-mRNA-1:cds;Parent=Msa0175940-mRNA-1 |
| chr1_4 | CDS | 62092493 | 62092731 | 62092493 | ID=Msa0175940-mRNA-1:cds;Parent=Msa0175940-mRNA-1 |
| chr1_4 | CDS | 62092295 | 62092401 | 62092295 | ID=Msa0175940-mRNA-1:cds;Parent=Msa0175940-mRNA-1 |
| chr1_4 | CDS | 62091763 | 62091956 | 62091763 | ID=Msa0175940-mRNA-1:cds;Parent=Msa0175940-mRNA-1 |
| chr1_4 | CDS | 62090715 | 62090839 | 62090715 | ID=Msa0175940-mRNA-1:cds;Parent=Msa0175940-mRNA-1 |
| chr1_4 | CDS | 62090015 | 62090110 | 62090015 | ID=Msa0175940-mRNA-1:cds;Parent=Msa0175940-mRNA-1 |
| chr1_4 | CDS | 62089865 | 62089926 | 62089865 | ID=Msa0175940-mRNA-1:cds;Parent=Msa0175940-mRNA-1 |
| chr1_4 | CDS | 62089641 | 62089734 | 62089641 | ID=Msa0175940-mRNA-1:cds;Parent=Msa0175940-mRNA-1 |
| chr1_4 | three_prime_UTR | 62089056 | 62089640 | 62089056 | ID=Msa0175940-mRNA-1:three_prime_utr;Parent=Msa0175940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
