AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1429500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429500 MtrunA17_Chr2g0283791 99.225 258 2 0 1 258 1 258 0.0 527
Msa1429500 MtrunA17_Chr2g0325591 81.102 254 47 1 6 258 8 261 4.40e-156 434
Msa1429500 MtrunA17_Chr8g0379011 85.124 242 33 2 1 239 1 242 2.25e-153 427
Msa1429500 MtrunA17_Chr2g0316011 78.689 244 50 2 6 248 9 251 1.10e-144 405
Msa1429500 MtrunA17_Chr5g0418971 76.596 235 54 1 9 242 11 245 1.64e-135 382
Msa1429500 MtrunA17_Chr5g0426551 69.412 255 71 3 3 254 6 256 1.88e-126 359
Msa1429500 MtrunA17_Chr3g0132301 69.841 252 72 3 3 251 6 256 2.30e-124 354
Msa1429500 MtrunA17_Chr4g0043141 70.763 236 49 2 24 239 1 236 1.72e-120 343
Msa1429500 MtrunA17_Chr3g0133161 64.979 237 79 2 6 238 12 248 2.00e-109 316
Msa1429500 MtrunA17_Chr1g0164601 53.219 233 102 4 6 234 12 241 5.55e-74 226
Msa1429500 MtrunA17_Chr3g0082111 52.361 233 104 4 6 234 42 271 2.21e-71 220
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429500 AT2G42590.2 78.261 253 53 2 8 258 10 262 4.74e-146 409
Msa1429500 AT2G42590.3 77.559 254 54 2 8 258 10 263 1.29e-145 409
Msa1429500 AT2G42590.1 77.559 254 54 2 8 258 10 263 1.47e-145 408
Msa1429500 AT1G26480.1 73.256 258 62 2 6 256 11 268 1.28e-140 395
Msa1429500 AT1G34760.2 76.891 238 53 2 9 245 9 245 4.26e-133 376
Msa1429500 AT1G34760.1 76.891 238 53 2 9 245 9 245 5.46e-133 376
Msa1429500 AT1G22300.2 76.829 246 56 1 1 245 1 246 5.43e-132 373
Msa1429500 AT1G22300.1 76.829 246 56 1 1 245 1 246 6.20e-132 373
Msa1429500 AT1G22300.3 80.172 232 45 1 9 239 9 240 6.34e-131 370
Msa1429500 AT1G78300.1 68.504 254 77 2 1 251 1 254 2.46e-124 354
Msa1429500 AT1G35160.1 68.077 260 79 3 2 258 8 266 2.44e-123 352
Msa1429500 AT3G02520.1 67.939 262 80 3 1 258 1 262 1.12e-122 350
Msa1429500 AT3G02520.2 67.939 262 80 3 1 258 1 262 1.12e-122 350
Msa1429500 AT4G09000.1 68.254 252 72 3 1 244 1 252 3.26e-122 349
Msa1429500 AT5G38480.1 71.200 250 68 4 1 247 1 249 4.05e-122 348
Msa1429500 AT5G38480.3 71.371 248 67 4 1 245 1 247 1.72e-121 347
Msa1429500 AT5G38480.2 71.371 248 67 4 1 245 1 247 1.72e-121 347
Msa1429500 AT4G09000.2 70.370 243 64 3 1 235 1 243 1.91e-120 347
Msa1429500 AT1G35160.2 70.886 237 66 2 2 235 8 244 3.62e-120 345
Msa1429500 AT5G65430.1 67.373 236 73 2 7 238 9 244 4.81e-114 328
Msa1429500 AT5G10450.1 67.373 236 73 2 7 238 9 244 5.36e-114 327
Msa1429500 AT5G65430.2 67.811 233 71 2 7 235 9 241 2.98e-113 325
Msa1429500 AT5G10450.2 67.811 233 71 2 7 235 9 241 4.09e-113 325
Msa1429500 AT5G65430.3 67.811 233 71 2 7 235 9 241 9.83e-113 325
Msa1429500 AT5G10450.3 67.811 233 71 2 7 235 9 241 1.19e-112 324
Msa1429500 AT5G10450.4 67.811 233 71 2 7 235 9 241 1.87e-112 325
Msa1429500 AT5G16050.1 63.813 257 81 3 9 253 11 267 1.08e-111 322
Msa1429500 AT5G16050.2 63.813 257 81 3 9 253 11 267 1.08e-111 322
Msa1429500 AT1G78220.1 49.362 235 117 1 1 233 1 235 1.28e-76 233
Msa1429500 AT1G22290.1 48.598 214 85 6 1 208 1 195 1.35e-52 169
Msa1429500 AT1G22290.2 48.387 217 87 6 1 211 1 198 2.53e-52 169
Msa1429500 AT2G10450.1 60.465 43 17 0 202 244 17 59 7.69e-11 57.4

Find 94 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATAAGCGATTAAATAAA+AGG 0.167615 tig0026517:+28516 None:intergenic
AGACTCTGTTGGTCAATTTC+AGG 0.210851 tig0026517:+28628 None:intergenic
GATTGAATTGAATTTGAAAA+AGG 0.215402 tig0026517:+28401 None:intergenic
TTGAAAATGCGGAACGGTTT+TGG 0.239836 tig0026517:+28286 None:intergenic
CATCTTATTCCGAATTCTTC+TGG 0.256329 tig0026517:-27850 Msa1429500:CDS
GATGACTGTAATAATTTAAT+TGG 0.256916 tig0026517:-24684 Msa1429500:three_prime_UTR
TTTGCAATTTCTCTGCATTC+AGG 0.259034 tig0026517:-28590 Msa1429500:five_prime_UTR
TTGGAGCACGTAGGGCTTCT+TGG 0.262919 tig0026517:-28011 Msa1429500:CDS
GAGTATTTCTTTCCTATTCA+TGG 0.280824 tig0026517:-28558 Msa1429500:five_prime_UTR
TAATATTAGATATACCTTTC+AGG 0.295110 tig0026517:+26815 None:intergenic
TTCGGCTTGTTCAGCGAGTT+TGG 0.337013 tig0026517:+28213 None:intergenic
AGGCGATTATTATCGTTATC+TGG 0.341220 tig0026517:-27687 Msa1429500:CDS
TAACGCAACATTGGAATTGC+TGG 0.345151 tig0026517:+24744 None:intergenic
GAAACTCAATGTTGAATTAA+CGG 0.348481 tig0026517:-28076 Msa1429500:CDS
TCAATCTTTGAAAGCGTATC+AGG 0.360445 tig0026517:-27624 Msa1429500:intron
GTTGCTTACAAGAATGTTGT+TGG 0.372901 tig0026517:-28030 Msa1429500:CDS
TGGCGGTGTAGACGAAGTTT+TGG 0.385645 tig0026517:+28233 None:intergenic
AGTCACTTTAGTCCATGAAT+AGG 0.389302 tig0026517:+28546 None:intergenic
AAATAAGCGATTAAATAAAA+GGG 0.395068 tig0026517:+28517 None:intergenic
ACTAGTCTCTATGCAAGTTC+TGG 0.395577 tig0026517:-24894 Msa1429500:three_prime_UTR
GGCTTGTCACCTTGCCAAGC+AGG 0.427559 tig0026517:-26700 Msa1429500:CDS
TTGCAATTTCTCTGCATTCA+GGG 0.435934 tig0026517:-28589 Msa1429500:five_prime_UTR
TTAGATTCACCAGAAGAATT+CGG 0.439019 tig0026517:+27841 None:intergenic
GACCAACAGAGTCTACATTC+AGG 0.440512 tig0026517:-28619 Msa1429500:five_prime_UTR
ACATCCCATCAGACTGGGTT+TGG 0.444485 tig0026517:-26879 Msa1429500:CDS
GACTCTGTTGGTCAATTTCA+GGG 0.457499 tig0026517:+28629 None:intergenic
TGTCAGAAGTCCACAATGTC+AGG 0.458840 tig0026517:+26589 None:intergenic
CTAGGAAAATTATAAACCCT+GGG 0.458990 tig0026517:-24788 Msa1429500:three_prime_UTR
TGCTACATCAAATGCCTGCT+TGG 0.461423 tig0026517:+26686 None:intergenic
ATGAAGAAGAAGGGAGAATG+AGG 0.462657 tig0026517:+28320 None:intergenic
GATGTTACCTTCGTAGCGTT+CGG 0.465455 tig0026517:+28195 None:intergenic
CAAATCTCAACGATCTTCCA+TGG 0.468609 tig0026517:-28266 Msa1429500:exon
AATAAGCGATTAAATAAAAG+GGG 0.470246 tig0026517:+28518 None:intergenic
ATCTCCTGCAGGAGGAGCTC+GGG 0.473781 tig0026517:+25046 None:intergenic
CATTGTCAAATGAAAGCCCC+AGG 0.479493 tig0026517:+24771 None:intergenic
TTTGCATGCAGTAAAGTGAC+AGG 0.485969 tig0026517:-24950 Msa1429500:intron
CACTGATCATGCAGCTTCTG+AGG 0.487882 tig0026517:-26617 Msa1429500:CDS
ACCTCTGCATTATCTCCTGC+AGG 0.493629 tig0026517:+25035 None:intergenic
ATCAATATCGACTCAAACAA+AGG 0.497937 tig0026517:-28381 Msa1429500:five_prime_UTR
TTTAACAGTCGAGGAACAAA+AGG 0.499669 tig0026517:-25078 Msa1429500:intron
CTCAGCCTCTGCAGCAGTGG+AGG 0.505948 tig0026517:+26913 None:intergenic
TATCTCCTGCAGGAGGAGCT+CGG 0.507940 tig0026517:+25045 None:intergenic
TGATGTAGCAATCGCTGAGT+TGG 0.508758 tig0026517:-26673 Msa1429500:CDS
GAATGTTGTTGGAGCACGTA+GGG 0.515655 tig0026517:-28019 Msa1429500:CDS
TCTAGGAAAATTATAAACCC+TGG 0.515873 tig0026517:-24789 Msa1429500:three_prime_UTR
GGAAGCCTCCACTGCTGCAG+AGG 0.516556 tig0026517:-26918 Msa1429500:CDS
ACCAACAGAGTCTACATTCA+GGG 0.519786 tig0026517:-28618 Msa1429500:five_prime_UTR
TTGAATTAACGGTTGAAGAG+AGG 0.519994 tig0026517:-28065 Msa1429500:CDS
TCTGCCCGAGCTCCTCCTGC+AGG 0.522343 tig0026517:-25050 Msa1429500:CDS
CAAAGCCAAACCCAGTCTGA+TGG 0.529750 tig0026517:+26874 None:intergenic
AGCAGCGAGAAGAAGCGAAA+GGG 0.529966 tig0026517:-27969 Msa1429500:CDS
TCCCACACATCCCATCAGAC+TGG 0.532289 tig0026517:-26885 Msa1429500:CDS
AAAAGCATCTAACGCAACAT+TGG 0.535046 tig0026517:+24735 None:intergenic
AGTCTCTATGCAAGTTCTGG+TGG 0.543018 tig0026517:-24891 Msa1429500:three_prime_UTR
GAGCACGTAGGGCTTCTTGG+AGG 0.551251 tig0026517:-28008 Msa1429500:CDS
GGAGTGATGTGAATGTCAAT+CGG 0.556097 tig0026517:-27948 Msa1429500:CDS
TAACTCAGCCTCTGCAGCAG+TGG 0.556950 tig0026517:+26910 None:intergenic
CATCAAATGCCTGCTTGGCA+AGG 0.559534 tig0026517:+26691 None:intergenic
TGTGAATGTCAATCGGATCA+AGG 0.560657 tig0026517:-27941 Msa1429500:CDS
TGAAGAAGAAGGGAGAATGA+GGG 0.564163 tig0026517:+28321 None:intergenic
AAAGCCAAACCCAGTCTGAT+GGG 0.565776 tig0026517:+26875 None:intergenic
TGAACAGTAAGTCTGTCTCT+AGG 0.566393 tig0026517:-24806 Msa1429500:three_prime_UTR
CCCACACATCCCATCAGACT+GGG 0.567720 tig0026517:-26884 Msa1429500:CDS
GTTTGGGTGATGAAGAAGAA+GGG 0.573430 tig0026517:+28311 None:intergenic
TCAATCGGATCAAGGAGTAT+CGG 0.575135 tig0026517:-27933 Msa1429500:CDS
AAATCTTGAACTCTCCTGAA+AGG 0.575438 tig0026517:-26829 Msa1429500:intron
GGCTTGTTCAGCGAGTTTGG+CGG 0.577446 tig0026517:+28216 None:intergenic
ATCGTTGAGATTTGAAAATG+CGG 0.579565 tig0026517:+28275 None:intergenic
GAGCGGTGATGAGAGGAAAG+AGG 0.579801 tig0026517:-27654 Msa1429500:CDS
AGTTTAAGAGCGGTGATGAG+AGG 0.596754 tig0026517:-27661 Msa1429500:CDS
ACTGATCATGCAGCTTCTGA+GGG 0.597947 tig0026517:-26616 Msa1429500:CDS
AATGATGAAATCATCTAAGG+TGG 0.601059 tig0026517:+24625 None:intergenic
CCCAGTCTGATGGGATGTGT+GGG 0.603776 tig0026517:+26884 None:intergenic
ATTCCTACAACTAGAAAACA+TGG 0.606234 tig0026517:+24858 None:intergenic
ACCCAGTCTGATGGGATGTG+TGG 0.607248 tig0026517:+26883 None:intergenic
ACTTCTGACATTCCTGAGGA+AGG 0.613131 tig0026517:-26576 Msa1429500:CDS
TCCCTGAATGTAGACTCTGT+TGG 0.618734 tig0026517:+28617 None:intergenic
GAGCAGCGAGAAGAAGCGAA+AGG 0.628936 tig0026517:-27970 Msa1429500:CDS
GGTTTGGGTGATGAAGAAGA+AGG 0.633297 tig0026517:+28310 None:intergenic
TGAGGGACAACCTGACATTG+TGG 0.634685 tig0026517:-26599 Msa1429500:CDS
GTGGACTTCTGACATTCCTG+AGG 0.637259 tig0026517:-26580 Msa1429500:CDS
TCTGACATTCCTGAGGAAGG+AGG 0.638467 tig0026517:-26573 Msa1429500:intron
ATTGTCAAATGAAAGCCCCA+GGG 0.641003 tig0026517:+24772 None:intergenic
GAACAAGCCGAACGCTACGA+AGG 0.646756 tig0026517:-28202 Msa1429500:intron
TGAGATTTGAAAATGCGGAA+CGG 0.660786 tig0026517:+28280 None:intergenic
ATAAGCGATTAAATAAAAGG+GGG 0.662193 tig0026517:+28519 None:intergenic
TGAGTTGGATTCTCTCAATG+AGG 0.669995 tig0026517:-26658 Msa1429500:CDS
TATCTGGCTGAGTTTAAGAG+CGG 0.685496 tig0026517:-27671 Msa1429500:CDS
AGTCTGATGGGATGTGTGGG+AGG 0.685644 tig0026517:+26887 None:intergenic
TCTGCATTATCTCCTGCAGG+AGG 0.689694 tig0026517:+25038 None:intergenic
TCCTGCAGGAGATAATGCAG+AGG 0.691697 tig0026517:-25036 Msa1429500:intron
GTTCAATTAAAACATCCTAG+TGG 0.694491 tig0026517:+24824 None:intergenic
TAGGAAAATTATAAACCCTG+GGG 0.717526 tig0026517:-24787 Msa1429500:three_prime_UTR
AGAATGTTGTTGGAGCACGT+AGG 0.773880 tig0026517:-28020 Msa1429500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAGCGATTAAATAAAA+GGG + tig0026517:24760-24779 None:intergenic 15.0%
!! TAAATAAGCGATTAAATAAA+AGG + tig0026517:24761-24780 None:intergenic 15.0%
!!! TATCGAAATTGAATTTTATA+AGG + tig0026517:24809-24828 None:intergenic 15.0%
!!! TTATAAAAGGTGTTTTTATT+GGG - tig0026517:25946-25965 Msa1429500:intron 15.0%
!!! TTTTATAGTAAACAATCATT+AGG + tig0026517:26046-26065 None:intergenic 15.0%
!!! ATATAATGACTCAATTTTAA+TGG + tig0026517:27352-27371 None:intergenic 15.0%
!! TAAAATTGAGTCATTATATA+TGG - tig0026517:27353-27372 Msa1429500:intron 15.0%
!! AAAATTGAGTCATTATATAT+GGG - tig0026517:27354-27373 Msa1429500:intron 15.0%
!!! ATATATGGGAAATAAAATTT+TGG - tig0026517:27368-27387 Msa1429500:intron 15.0%
!!! TATATGGGAAATAAAATTTT+GGG - tig0026517:27369-27388 Msa1429500:intron 15.0%
!!! AATATATTTTGGACATATAT+TGG + tig0026517:27865-27884 None:intergenic 15.0%
!! GTCCAAAATATATTAAATAT+CGG - tig0026517:27871-27890 Msa1429500:CDS 15.0%
!! AATAAGCGATTAAATAAAAG+GGG + tig0026517:24759-24778 None:intergenic 20.0%
!! GATTGAATTGAATTTGAAAA+AGG + tig0026517:24876-24895 None:intergenic 20.0%
!!! CAAAATGTAGGTTTATTTTT+TGG - tig0026517:25468-25487 Msa1429500:intron 20.0%
!! TATTGCCTAAAACTTATAAA+AGG - tig0026517:25933-25952 Msa1429500:intron 20.0%
!!! AAACACCTTTTATAAGTTTT+AGG + tig0026517:25941-25960 None:intergenic 20.0%
!!! CTTATAAAAGGTGTTTTTAT+TGG - tig0026517:25945-25964 Msa1429500:intron 20.0%
!! TAATATTAGATATACCTTTC+AGG + tig0026517:26462-26481 None:intergenic 20.0%
!!! AATAAAAAACAAAGCATTTC+AGG + tig0026517:26783-26802 None:intergenic 20.0%
!! TGAAGTTATGTAAATTCATA+AGG + tig0026517:27043-27062 None:intergenic 20.0%
!! GTTAAAATTGAGTCATTATA+GGG - tig0026517:27614-27633 Msa1429500:intron 20.0%
!! TTAAAATTGAGTCATTATAG+GGG - tig0026517:27615-27634 Msa1429500:intron 20.0%
!! AAATAATATGCATACGAATT+AGG + tig0026517:28107-28126 None:intergenic 20.0%
!! TGCAAAATATAACTTTGTTA+AGG + tig0026517:28310-28329 None:intergenic 20.0%
!! GATGACTGTAATAATTTAAT+TGG - tig0026517:28590-28609 Msa1429500:five_prime_UTR 20.0%
! ATAAGCGATTAAATAAAAGG+GGG + tig0026517:24758-24777 None:intergenic 25.0%
!!! TGCTTTGTTTCTTTTAGAAA+TGG - tig0026517:25153-25172 Msa1429500:intron 25.0%
! GAAACTCAATGTTGAATTAA+CGG - tig0026517:25198-25217 Msa1429500:intron 25.0%
! TGTGTTCTATTACAAAATGT+AGG - tig0026517:25456-25475 Msa1429500:intron 25.0%
!! ATTCCATCTAATCTTGTTAT+AGG - tig0026517:25897-25916 Msa1429500:intron 25.0%
! AAACCTATAACAAGATTAGA+TGG + tig0026517:25903-25922 None:intergenic 25.0%
! AACTGTTATATACACTTCAT+AGG - tig0026517:26014-26033 Msa1429500:intron 25.0%
! ACTGTTATATACACTTCATA+GGG - tig0026517:26015-26034 Msa1429500:intron 25.0%
! AAAAAAATTCTTGAGTGAAC+TGG + tig0026517:26282-26301 None:intergenic 25.0%
! TCATACATGAAAATAATTGC+AGG - tig0026517:26335-26354 Msa1429500:intron 25.0%
!! TAGAGATTCCAACTAATTTT+TGG - tig0026517:26932-26951 Msa1429500:intron 25.0%
! TGAATTATGTTCATGTTTCA+TGG + tig0026517:26997-27016 None:intergenic 25.0%
!!! ATTTTTCAACAAAAACTGTC+AGG + tig0026517:27085-27104 None:intergenic 25.0%
!!! TAAAATTTTGGGTTTTTGCA+CGG - tig0026517:27380-27399 Msa1429500:intron 25.0%
!!! TCAATTTTAACGATACTTCT+GGG + tig0026517:27605-27624 None:intergenic 25.0%
! CGTTAAAATTGAGTCATTAT+AGG - tig0026517:27613-27632 Msa1429500:intron 25.0%
!! GGCCGATATTTAATATATTT+TGG + tig0026517:27876-27895 None:intergenic 25.0%
!!! AGAATCATAAACTTTTGAGT+TGG + tig0026517:27904-27923 None:intergenic 25.0%
! ATTCAGGAAAATTGATTGAA+GGG + tig0026517:28166-28185 None:intergenic 25.0%
! AATTCAGGAAAATTGATTGA+AGG + tig0026517:28167-28186 None:intergenic 25.0%
!! TCCATGAATCTTATGTTTTT+CGG + tig0026517:28572-28591 None:intergenic 25.0%
GAGTATTTCTTTCCTATTCA+TGG - tig0026517:24716-24735 Msa1429500:three_prime_UTR 30.0%
!! ATCAATATCGACTCAAACAA+AGG - tig0026517:24893-24912 Msa1429500:three_prime_UTR 30.0%
ATCGTTGAGATTTGAAAATG+CGG + tig0026517:25002-25021 None:intergenic 30.0%
GAAAAAAGTTGAATCAGAGT+TGG - tig0026517:25363-25382 Msa1429500:intron 30.0%
TTAGATTCACCAGAAGAATT+CGG + tig0026517:25436-25455 None:intergenic 30.0%
! TTTTGCATTCGAATTCATTG+TGG - tig0026517:25989-26008 Msa1429500:intron 30.0%
CTGTTATATACACTTCATAG+GGG - tig0026517:26016-26035 Msa1429500:intron 30.0%
TTCATCTTCAAATCAATCAC+AGG + tig0026517:26074-26093 None:intergenic 30.0%
!! ATTGATTTGAAGATGAAGTG+AGG - tig0026517:26077-26096 Msa1429500:intron 30.0%
!!! TGATCTATGATTGGTTTTCA+TGG - tig0026517:26170-26189 Msa1429500:intron 30.0%
!!! GATGGTTTTTCAAGTAAAAG+AGG + tig0026517:26201-26220 None:intergenic 30.0%
AAAAACCATCATCTTGTCTA+GGG - tig0026517:26211-26230 Msa1429500:intron 30.0%
!!! ACTCAAGAATTTTTTTGCAC+TGG - tig0026517:26286-26305 Msa1429500:intron 30.0%
ATGAACACATAAAAACTGAG+GGG + tig0026517:26511-26530 None:intergenic 30.0%
CATGAACACATAAAAACTGA+GGG + tig0026517:26512-26531 None:intergenic 30.0%
! AGTTTTTATGTGTTCATGGT+AGG - tig0026517:26514-26533 Msa1429500:intron 30.0%
! ACTGTTTTCTTTCGTATTTC+AGG - tig0026517:26552-26571 Msa1429500:intron 30.0%
! CTGTTTTCTTTCGTATTTCA+GGG - tig0026517:26553-26572 Msa1429500:intron 30.0%
TATGCTAATTTGATATGCAG+AGG - tig0026517:26745-26764 Msa1429500:intron 30.0%
ACTAACAACTAACAATCACA+TGG + tig0026517:26884-26903 None:intergenic 30.0%
CTTCTGATCCAAAAATTAGT+TGG + tig0026517:26943-26962 None:intergenic 30.0%
! AAAACAAGATCTAGTTCCAT+TGG + tig0026517:26971-26990 None:intergenic 30.0%
!! CTCAATTTTAACGATACTTC+TGG + tig0026517:27606-27625 None:intergenic 30.0%
! AGTCATTATAGGGGAAATTT+TGG - tig0026517:27624-27643 Msa1429500:intron 30.0%
! GTCATTATAGGGGAAATTTT+GGG - tig0026517:27625-27644 Msa1429500:CDS 30.0%
AATAAACCTACTTTCCCTAT+TGG - tig0026517:27660-27679 Msa1429500:CDS 30.0%
TATGAATCACAGTTCCAATA+GGG + tig0026517:27677-27696 None:intergenic 30.0%
TTATGAATCACAGTTCCAAT+AGG + tig0026517:27678-27697 None:intergenic 30.0%
AAGTAACAATGGCAAAATTG+AGG + tig0026517:28059-28078 None:intergenic 30.0%
GTTTGAAAGGAAAGTAACAA+TGG + tig0026517:28070-28089 None:intergenic 30.0%
GTTAAAAAGGAAGGAAATTC+AGG + tig0026517:28182-28201 None:intergenic 30.0%
! TAAAGTGACAGGTTTTACTA+GGG - tig0026517:28335-28354 Msa1429500:five_prime_UTR 30.0%
!!! TTTCCATGTTTTCTAGTTGT+AGG - tig0026517:28413-28432 Msa1429500:five_prime_UTR 30.0%
ATTCCTACAACTAGAAAACA+TGG + tig0026517:28419-28438 None:intergenic 30.0%
GTTCAATTAAAACATCCTAG+TGG + tig0026517:28453-28472 None:intergenic 30.0%
TCTAGGAAAATTATAAACCC+TGG - tig0026517:28485-28504 Msa1429500:five_prime_UTR 30.0%
CTAGGAAAATTATAAACCCT+GGG - tig0026517:28486-28505 Msa1429500:five_prime_UTR 30.0%
TAGGAAAATTATAAACCCTG+GGG - tig0026517:28487-28506 Msa1429500:five_prime_UTR 30.0%
! CCATGAATCTTATGTTTTTC+GGG + tig0026517:28571-28590 None:intergenic 30.0%
TTTGCAATTTCTCTGCATTC+AGG - tig0026517:24684-24703 Msa1429500:three_prime_UTR 35.0%
TTGCAATTTCTCTGCATTCA+GGG - tig0026517:24685-24704 Msa1429500:three_prime_UTR 35.0%
! AGTCACTTTAGTCCATGAAT+AGG + tig0026517:24731-24750 None:intergenic 35.0%
TGAGATTTGAAAATGCGGAA+CGG + tig0026517:24997-25016 None:intergenic 35.0%
!!! TGTAGACGAAGTTTTGGTTA+GGG + tig0026517:25038-25057 None:intergenic 35.0%
TTGAATTAACGGTTGAAGAG+AGG - tig0026517:25209-25228 Msa1429500:intron 35.0%
GTTGCTTACAAGAATGTTGT+TGG - tig0026517:25244-25263 Msa1429500:intron 35.0%
CATCTTATTCCGAATTCTTC+TGG - tig0026517:25424-25443 Msa1429500:intron 35.0%
TTCGTGTTTGATTGTGTTGT+AGG - tig0026517:25562-25581 Msa1429500:intron 35.0%
GTTTGATTGTGTTGTAGGAA+AGG - tig0026517:25567-25586 Msa1429500:intron 35.0%
AGGCGATTATTATCGTTATC+TGG - tig0026517:25587-25606 Msa1429500:intron 35.0%
! TCAATCTTTGAAAGCGTATC+AGG - tig0026517:25650-25669 Msa1429500:intron 35.0%
CAGGTATTCTACACAATTGT+CGG - tig0026517:25669-25688 Msa1429500:intron 35.0%
AGGTATTCTACACAATTGTC+GGG - tig0026517:25670-25689 Msa1429500:intron 35.0%
CTTGAAAGCTTAATCATGCT+TGG - tig0026517:25743-25762 Msa1429500:intron 35.0%
! TGAAGTGAGGTGTTATATGT+TGG - tig0026517:26090-26109 Msa1429500:intron 35.0%
ACCAATCATAGATCAGTCTT+GGG + tig0026517:26165-26184 None:intergenic 35.0%
AACCAATCATAGATCAGTCT+TGG + tig0026517:26166-26185 None:intergenic 35.0%
GAAAAACCATCATCTTGTCT+AGG - tig0026517:26210-26229 Msa1429500:intron 35.0%
AAAACCATCATCTTGTCTAG+GGG - tig0026517:26212-26231 Msa1429500:intron 35.0%
AAATCTTGAACTCTCCTGAA+AGG - tig0026517:26445-26464 Msa1429500:intron 35.0%
TGAACACATAAAAACTGAGG+GGG + tig0026517:26510-26529 None:intergenic 35.0%
CCATGAACACATAAAAACTG+AGG + tig0026517:26513-26532 None:intergenic 35.0%
! CCTCAGTTTTTATGTGTTCA+TGG - tig0026517:26510-26529 Msa1429500:intron 35.0%
! GATATTTTCCTTAGTCAGAC+AGG - tig0026517:26813-26832 Msa1429500:intron 35.0%
AGTTGGAATCTCTATCAAGT+GGG + tig0026517:26926-26945 None:intergenic 35.0%
TAGTTGGAATCTCTATCAAG+TGG + tig0026517:26927-26946 None:intergenic 35.0%
!!! GAGTTTTTAGAACTACTTGC+AGG + tig0026517:27120-27139 None:intergenic 35.0%
TGTGTCTATGTTTCCAATTG+CGG - tig0026517:27153-27172 Msa1429500:intron 35.0%
!! TCAATTTTAATGGTGCTCCT+GGG + tig0026517:27342-27361 None:intergenic 35.0%
GATTCCAATTCAAGACAAGA+AGG + tig0026517:27528-27547 None:intergenic 35.0%
TCTTGTCTTGAATTGGAATC+TGG - tig0026517:27528-27547 Msa1429500:intron 35.0%
TTAGAATGAGGGAAAGTTGA+GGG + tig0026517:27759-27778 None:intergenic 35.0%
ATTAGAATGAGGGAAAGTTG+AGG + tig0026517:27760-27779 None:intergenic 35.0%
TGTCACAGCTATTAGAATGA+GGG + tig0026517:27770-27789 None:intergenic 35.0%
TTGTCACAGCTATTAGAATG+AGG + tig0026517:27771-27790 None:intergenic 35.0%
!!! TAAACTTTTGAGTTGGTGCT+TGG + tig0026517:27897-27916 None:intergenic 35.0%
TCATCATTAACTTCCAGCAT+TGG - tig0026517:27938-27957 Msa1429500:CDS 35.0%
CATCATTAACTTCCAGCATT+GGG - tig0026517:27939-27958 Msa1429500:CDS 35.0%
TGTCTTTAGTGTTTCCTTTC+TGG - tig0026517:27981-28000 Msa1429500:CDS 35.0%
! CGAGTTTAAAACAACCAGAA+AGG + tig0026517:27998-28017 None:intergenic 35.0%
GAAAATTGATTGAAGGGCAA+AGG + tig0026517:28160-28179 None:intergenic 35.0%
TTGTTCCTCGACTGTTAAAA+AGG + tig0026517:28195-28214 None:intergenic 35.0%
TTTAACAGTCGAGGAACAAA+AGG - tig0026517:28196-28215 Msa1429500:intron 35.0%
! GTAAAGTGACAGGTTTTACT+AGG - tig0026517:28334-28353 Msa1429500:five_prime_UTR 35.0%
! AAAGTGACAGGTTTTACTAG+GGG - tig0026517:28336-28355 Msa1429500:five_prime_UTR 35.0%
!!! GAATTTTAAAGCTCACCACT+AGG - tig0026517:28435-28454 Msa1429500:five_prime_UTR 35.0%
!! AAAAGCATCTAACGCAACAT+TGG + tig0026517:28542-28561 None:intergenic 35.0%
CCCGAAAAACATAAGATTCA+TGG - tig0026517:28568-28587 Msa1429500:five_prime_UTR 35.0%
GACTCTGTTGGTCAATTTCA+GGG + tig0026517:24648-24667 None:intergenic 40.0%
AGACTCTGTTGGTCAATTTC+AGG + tig0026517:24649-24668 None:intergenic 40.0%
ACCAACAGAGTCTACATTCA+GGG - tig0026517:24656-24675 Msa1429500:three_prime_UTR 40.0%
TGAAGAAGAAGGGAGAATGA+GGG + tig0026517:24956-24975 None:intergenic 40.0%
ATGAAGAAGAAGGGAGAATG+AGG + tig0026517:24957-24976 None:intergenic 40.0%
GTTTGGGTGATGAAGAAGAA+GGG + tig0026517:24966-24985 None:intergenic 40.0%
! TTGAAAATGCGGAACGGTTT+TGG + tig0026517:24991-25010 None:intergenic 40.0%
CAAATCTCAACGATCTTCCA+TGG - tig0026517:25008-25027 Msa1429500:intron 40.0%
!!! GTAGACGAAGTTTTGGTTAG+GGG + tig0026517:25037-25056 None:intergenic 40.0%
!!! GTGTAGACGAAGTTTTGGTT+AGG + tig0026517:25039-25058 None:intergenic 40.0%
GGAGTGATGTGAATGTCAAT+CGG - tig0026517:25326-25345 Msa1429500:intron 40.0%
TGTGAATGTCAATCGGATCA+AGG - tig0026517:25333-25352 Msa1429500:intron 40.0%
! TCAATCGGATCAAGGAGTAT+CGG - tig0026517:25341-25360 Msa1429500:intron 40.0%
! TTTTTGCTCGCGCTGAAATT+TGG - tig0026517:25517-25536 Msa1429500:intron 40.0%
TATCTGGCTGAGTTTAAGAG+CGG - tig0026517:25603-25622 Msa1429500:intron 40.0%
GGTATTCTACACAATTGTCG+GGG - tig0026517:25671-25690 Msa1429500:intron 40.0%
! TATGTTGGTGCTTAGTCTTC+AGG - tig0026517:26105-26124 Msa1429500:intron 40.0%
TCCCAAGACTGATCTATGAT+TGG - tig0026517:26161-26180 Msa1429500:intron 40.0%
GAACACATAAAAACTGAGGG+GGG + tig0026517:26509-26528 None:intergenic 40.0%
TTTATGTGTTCATGGTAGGC+TGG - tig0026517:26518-26537 Msa1429500:intron 40.0%
! TGAGTTGGATTCTCTCAATG+AGG - tig0026517:26616-26635 Msa1429500:CDS 40.0%
! ATTTTCCTTAGTCAGACAGG+AGG - tig0026517:26816-26835 Msa1429500:intron 40.0%
TGGATCAGAAGAAGATCCAA+TGG - tig0026517:26952-26971 Msa1429500:intron 40.0%
TTCACAATCCTGTAGAAAGC+AGG - tig0026517:27059-27078 Msa1429500:intron 40.0%
TGTTGTGGTCTAAAAAACCC+AGG - tig0026517:27322-27341 Msa1429500:intron 40.0%
!! CTCAATTTTAATGGTGCTCC+TGG + tig0026517:27343-27362 None:intergenic 40.0%
TCCAATTCAAGACAAGAAGG+CGG + tig0026517:27525-27544 None:intergenic 40.0%
GGTTATCTCAGCCAAAACAT+TGG + tig0026517:27584-27603 None:intergenic 40.0%
ACAGTTCCAATAGGGAAAGT+AGG + tig0026517:27669-27688 None:intergenic 40.0%
!! CTGATTGATGATGGTTGAGA+AGG + tig0026517:27802-27821 None:intergenic 40.0%
TCTCAACCATCATCAATCAG+TGG - tig0026517:27802-27821 Msa1429500:intron 40.0%
! TCATCTCTCAATCCCAGTTT+TGG - tig0026517:27826-27845 Msa1429500:CDS 40.0%
! CATCTCTCAATCCCAGTTTT+GGG - tig0026517:27827-27846 Msa1429500:CDS 40.0%
! ATCTCTCAATCCCAGTTTTG+GGG - tig0026517:27828-27847 Msa1429500:CDS 40.0%
! ATACGAATTAGGAAGTGCGA+AGG + tig0026517:28096-28115 None:intergenic 40.0%
AATTGATTGAAGGGCAAAGG+CGG + tig0026517:28157-28176 None:intergenic 40.0%
! TCCTTCCTTTTTAACAGTCG+AGG - tig0026517:28187-28206 Msa1429500:intron 40.0%
TCCTCGACTGTTAAAAAGGA+AGG + tig0026517:28191-28210 None:intergenic 40.0%
TTACCTGAGAGATTGTCTTC+TGG - tig0026517:28273-28292 Msa1429500:five_prime_UTR 40.0%
AAACCAGAAGACAATCTCTC+AGG + tig0026517:28279-28298 None:intergenic 40.0%
TTTGCATGCAGTAAAGTGAC+AGG - tig0026517:28324-28343 Msa1429500:five_prime_UTR 40.0%
! ACTAGTCTCTATGCAAGTTC+TGG - tig0026517:28380-28399 Msa1429500:five_prime_UTR 40.0%
TGAACAGTAAGTCTGTCTCT+AGG - tig0026517:28468-28487 Msa1429500:five_prime_UTR 40.0%
ATTGTCAAATGAAAGCCCCA+GGG + tig0026517:28505-28524 None:intergenic 40.0%
TAACGCAACATTGGAATTGC+TGG + tig0026517:28533-28552 None:intergenic 40.0%
GACCAACAGAGTCTACATTC+AGG - tig0026517:24655-24674 Msa1429500:three_prime_UTR 45.0%
TCCCTGAATGTAGACTCTGT+TGG + tig0026517:24660-24679 None:intergenic 45.0%
GGTTTGGGTGATGAAGAAGA+AGG + tig0026517:24967-24986 None:intergenic 45.0%
!! AAAATGCGGAACGGTTTTGG+TGG + tig0026517:24988-25007 None:intergenic 45.0%
GATGTTACCTTCGTAGCGTT+CGG + tig0026517:25082-25101 None:intergenic 45.0%
AGAATGTTGTTGGAGCACGT+AGG - tig0026517:25254-25273 Msa1429500:intron 45.0%
GAATGTTGTTGGAGCACGTA+GGG - tig0026517:25255-25274 Msa1429500:intron 45.0%
AGTTTAAGAGCGGTGATGAG+AGG - tig0026517:25613-25632 Msa1429500:intron 45.0%
TCTTCAATAAAGCAGTCCGC+AGG - tig0026517:25829-25848 Msa1429500:intron 45.0%
ACTTCCCCTAGACAAGATGA+TGG + tig0026517:26219-26238 None:intergenic 45.0%
AAAGCCAAACCCAGTCTGAT+GGG + tig0026517:26402-26421 None:intergenic 45.0%
TGCTACATCAAATGCCTGCT+TGG + tig0026517:26591-26610 None:intergenic 45.0%
TGATGTAGCAATCGCTGAGT+TGG - tig0026517:26601-26620 Msa1429500:CDS 45.0%
ACTGATCATGCAGCTTCTGA+GGG - tig0026517:26658-26677 Msa1429500:CDS 45.0%
TGTCAGAAGTCCACAATGTC+AGG + tig0026517:26688-26707 None:intergenic 45.0%
ACTTCTGACATTCCTGAGGA+AGG - tig0026517:26698-26717 Msa1429500:CDS 45.0%
! TAGTTTTCACCTCCTTCCTC+AGG + tig0026517:26713-26732 None:intergenic 45.0%
GGAATCTCTATCAAGTGGGT+GGG + tig0026517:26922-26941 None:intergenic 45.0%
TGGAATCTCTATCAAGTGGG+TGG + tig0026517:26923-26942 None:intergenic 45.0%
!!! TGGCATCTGGTTTTGCATCT+TGG - tig0026517:27276-27295 Msa1429500:intron 45.0%
!!! GGCATCTGGTTTTGCATCTT+GGG - tig0026517:27277-27296 Msa1429500:intron 45.0%
AGAAGTTGCACAGACAAGAG+GGG + tig0026517:27420-27439 None:intergenic 45.0%
GAGAAGTTGCACAGACAAGA+GGG + tig0026517:27421-27440 None:intergenic 45.0%
AGAGAAGTTGCACAGACAAG+AGG + tig0026517:27422-27441 None:intergenic 45.0%
TTGTCAATAGTGCCGCATTG+CGG - tig0026517:27441-27460 Msa1429500:intron 45.0%
!!! TGGAATCTGGTTTTGCGTCT+TGG - tig0026517:27541-27560 Msa1429500:intron 45.0%
!!! GGAATCTGGTTTTGCGTCTT+GGG - tig0026517:27542-27561 Msa1429500:intron 45.0%
! GGAAAAGATGGTGGCAGTTT+GGG + tig0026517:27712-27731 None:intergenic 45.0%
! TGGAAAAGATGGTGGCAGTT+TGG + tig0026517:27713-27732 None:intergenic 45.0%
GTACAATAAACCACTGCTGC+TGG + tig0026517:27733-27752 None:intergenic 45.0%
AATGAGGGAAAGTTGAGGGT+TGG + tig0026517:27755-27774 None:intergenic 45.0%
! GATGAGCCACTGATTGATGA+TGG + tig0026517:27811-27830 None:intergenic 45.0%
CGATGTTAGACCCCAAAACT+GGG + tig0026517:27841-27860 None:intergenic 45.0%
!!! CCAGTTTTGGGGTCTAACAT+CGG - tig0026517:27839-27858 Msa1429500:CDS 45.0%
ATACCACTAAGACCCAATGC+TGG + tig0026517:27954-27973 None:intergenic 45.0%
AGTGCGAAGGCAAGTTTGAA+AGG + tig0026517:28083-28102 None:intergenic 45.0%
! CAGGTTTTACTAGGGGTTTG+TGG - tig0026517:28343-28362 Msa1429500:five_prime_UTR 45.0%
! AGTCTCTATGCAAGTTCTGG+TGG - tig0026517:28383-28402 Msa1429500:five_prime_UTR 45.0%
CATTGTCAAATGAAAGCCCC+AGG + tig0026517:28506-28525 None:intergenic 45.0%
!! CGGAACGGTTTTGGTGGTTT+GGG + tig0026517:24982-25001 None:intergenic 50.0%
!!! GTTTTGGTTAGGGGAAGCCA+TGG + tig0026517:25028-25047 None:intergenic 50.0%
! TGGCGGTGTAGACGAAGTTT+TGG + tig0026517:25044-25063 None:intergenic 50.0%
! TTCGGCTTGTTCAGCGAGTT+TGG + tig0026517:25064-25083 None:intergenic 50.0%
AGCAGCGAGAAGAAGCGAAA+GGG - tig0026517:25305-25324 Msa1429500:intron 50.0%
ATAAAGCAGTCCGCAGGACT+TGG - tig0026517:25835-25854 Msa1429500:intron 50.0%
! TGGTGCTTAGTCTTCAGGCA+TGG - tig0026517:26110-26129 Msa1429500:intron 50.0%
ACATCCCATCAGACTGGGTT+TGG - tig0026517:26395-26414 Msa1429500:intron 50.0%
CAAAGCCAAACCCAGTCTGA+TGG + tig0026517:26403-26422 None:intergenic 50.0%
CATCAAATGCCTGCTTGGCA+AGG + tig0026517:26586-26605 None:intergenic 50.0%
CACTGATCATGCAGCTTCTG+AGG - tig0026517:26657-26676 Msa1429500:CDS 50.0%
TGAGGGACAACCTGACATTG+TGG - tig0026517:26675-26694 Msa1429500:CDS 50.0%
GTGGACTTCTGACATTCCTG+AGG - tig0026517:26694-26713 Msa1429500:CDS 50.0%
TCTGACATTCCTGAGGAAGG+AGG - tig0026517:26701-26720 Msa1429500:CDS 50.0%
CACATCCTCCTGTCTGACTA+AGG + tig0026517:26824-26843 None:intergenic 50.0%
TCTCTATCAAGTGGGTGGGA+GGG + tig0026517:26918-26937 None:intergenic 50.0%
ATCTCTATCAAGTGGGTGGG+AGG + tig0026517:26919-26938 None:intergenic 50.0%
ATTACCGTGGCGTGAAACAG+TGG - tig0026517:27179-27198 Msa1429500:intron 50.0%
ATGTGTCGTGTGGTCCAGAA+TGG - tig0026517:27217-27236 Msa1429500:intron 50.0%
CAACAGACGCAACTCCATTC+TGG + tig0026517:27234-27253 None:intergenic 50.0%
GATGCCAAGACAAGACACGA+AGG + tig0026517:27263-27282 None:intergenic 50.0%
TCGTGTCTTGTCTTGGCATC+TGG - tig0026517:27263-27282 Msa1429500:intron 50.0%
!! ATAGGAGCGTCACAGTGTTG+TGG - tig0026517:27307-27326 Msa1429500:intron 50.0%
GCACAGACAAGAGGGGAAAT+AGG + tig0026517:27413-27432 None:intergenic 50.0%
TGTCAATAGTGCCGCATTGC+GGG - tig0026517:27442-27461 Msa1429500:intron 50.0%
GCCGCCTTCTTGTCTTGAAT+TGG - tig0026517:27521-27540 Msa1429500:intron 50.0%
!!! GGATAGGAGCGCCAATGTTT+TGG - tig0026517:27570-27589 Msa1429500:intron 50.0%
! AAGATGGTGGCAGTTTGGGA+CGG + tig0026517:27708-27727 None:intergenic 50.0%
ACTGCTGCTGGAAAAGATGG+TGG + tig0026517:27721-27740 None:intergenic 50.0%
! ACCATCTTTTCCAGCAGCAG+TGG - tig0026517:27720-27739 Msa1429500:intron 50.0%
ACCACTGCTGCTGGAAAAGA+TGG + tig0026517:27724-27743 None:intergenic 50.0%
! GATGATGGTTGAGAAGGAGC+AGG + tig0026517:27796-27815 None:intergenic 50.0%
CCGATGTTAGACCCCAAAAC+TGG + tig0026517:27842-27861 None:intergenic 50.0%
! CTTCCAGCATTGGGTCTTAG+TGG - tig0026517:27948-27967 Msa1429500:CDS 50.0%
TCTGCATTATCTCCTGCAGG+AGG + tig0026517:28239-28258 None:intergenic 50.0%
TCCTGCAGGAGATAATGCAG+AGG - tig0026517:28238-28257 Msa1429500:CDS 50.0%
ACCTCTGCATTATCTCCTGC+AGG + tig0026517:28242-28261 None:intergenic 50.0%
!! GCGGAACGGTTTTGGTGGTT+TGG + tig0026517:24983-25002 None:intergenic 55.0%
! GGCTTGTTCAGCGAGTTTGG+CGG + tig0026517:25061-25080 None:intergenic 55.0%
GAACAAGCCGAACGCTACGA+AGG - tig0026517:25072-25091 Msa1429500:CDS 55.0%
TTGGAGCACGTAGGGCTTCT+TGG - tig0026517:25263-25282 Msa1429500:intron 55.0%
GAGCAGCGAGAAGAAGCGAA+AGG - tig0026517:25304-25323 Msa1429500:intron 55.0%
GAGCGGTGATGAGAGGAAAG+AGG - tig0026517:25620-25639 Msa1429500:intron 55.0%
!! GTCCGCAGGACTTGGCTTTT+CGG - tig0026517:25843-25862 Msa1429500:intron 55.0%
!! TCCGCAGGACTTGGCTTTTC+GGG - tig0026517:25844-25863 Msa1429500:intron 55.0%
TCCCGAAAAGCCAAGTCCTG+CGG + tig0026517:25848-25867 None:intergenic 55.0%
TAACTCAGCCTCTGCAGCAG+TGG + tig0026517:26367-26386 None:intergenic 55.0%
AGTCTGATGGGATGTGTGGG+AGG + tig0026517:26390-26409 None:intergenic 55.0%
TCCCACACATCCCATCAGAC+TGG - tig0026517:26389-26408 Msa1429500:intron 55.0%
CCCAGTCTGATGGGATGTGT+GGG + tig0026517:26393-26412 None:intergenic 55.0%
CCCACACATCCCATCAGACT+GGG - tig0026517:26390-26409 Msa1429500:intron 55.0%
ACCCAGTCTGATGGGATGTG+TGG + tig0026517:26394-26413 None:intergenic 55.0%
CTGTCAGGCCTGCTTTCTAC+AGG + tig0026517:27070-27089 None:intergenic 55.0%
CTAGCCACTGTTTCACGCCA+CGG + tig0026517:27186-27205 None:intergenic 55.0%
TCTGGACCACACGACACATC+TGG + tig0026517:27216-27235 None:intergenic 55.0%
GCCAAGACAAGACACGAAGG+CGG + tig0026517:27260-27279 None:intergenic 55.0%
TGCATCTTGGGTCCTGCGAT+AGG - tig0026517:27289-27308 Msa1429500:intron 55.0%
GTCAATAGTGCCGCATTGCG+GGG - tig0026517:27443-27462 Msa1429500:intron 55.0%
TCAATAGTGCCGCATTGCGG+GGG - tig0026517:27444-27463 Msa1429500:intron 55.0%
ACAGCCGCAACTCCATTCTG+GGG + tig0026517:27497-27516 None:intergenic 55.0%
GACAGCCGCAACTCCATTCT+GGG + tig0026517:27498-27517 None:intergenic 55.0%
!! TGGTTTTGCGTCTTGGGTGC+TGG - tig0026517:27548-27567 Msa1429500:intron 55.0%
! GGTTTTGCGTCTTGGGTGCT+GGG - tig0026517:27549-27568 Msa1429500:intron 55.0%
TATCTCCTGCAGGAGGAGCT+CGG + tig0026517:28232-28251 None:intergenic 55.0%
GAGCACGTAGGGCTTCTTGG+AGG - tig0026517:25266-25285 Msa1429500:intron 60.0%
GGCTTGTCACCTTGCCAAGC+AGG - tig0026517:26574-26593 Msa1429500:CDS 60.0%
CCACGGTAATGCGCCGCAAT+TGG + tig0026517:27169-27188 None:intergenic 60.0%
CCAATTGCGGCGCATTACCG+TGG - tig0026517:27166-27185 Msa1429500:intron 60.0%
TGCCTGCCAGATGTGTCGTG+TGG - tig0026517:27207-27226 Msa1429500:intron 60.0%
GACCACACGACACATCTGGC+AGG + tig0026517:27212-27231 None:intergenic 60.0%
GCCGCCTTCGTGTCTTGTCT+TGG - tig0026517:27256-27275 Msa1429500:intron 60.0%
CACTGTGACGCTCCTATCGC+AGG + tig0026517:27304-27323 None:intergenic 60.0%
CAATAGTGCCGCATTGCGGG+GGG - tig0026517:27445-27464 Msa1429500:intron 60.0%
! GGCTACTTTGCCCCCCAGAA+TGG - tig0026517:27482-27501 Msa1429500:intron 60.0%
TGCCCCCCAGAATGGAGTTG+CGG - tig0026517:27490-27509 Msa1429500:intron 60.0%
AGCCGCAACTCCATTCTGGG+GGG + tig0026517:27495-27514 None:intergenic 60.0%
CAGCCGCAACTCCATTCTGG+GGG + tig0026517:27496-27515 None:intergenic 60.0%
CGACAGCCGCAACTCCATTC+TGG + tig0026517:27499-27518 None:intergenic 60.0%
!! TGCGTCTTGGGTGCTGGGAT+AGG - tig0026517:27554-27573 Msa1429500:intron 60.0%
ATCTCCTGCAGGAGGAGCTC+GGG + tig0026517:28231-28250 None:intergenic 60.0%
GGAAGCCTCCACTGCTGCAG+AGG - tig0026517:26356-26375 Msa1429500:intron 65.0%
CTCAGCCTCTGCAGCAGTGG+AGG + tig0026517:26364-26383 None:intergenic 65.0%
TAGTGCCGCATTGCGGGGGG+TGG - tig0026517:27448-27467 Msa1429500:intron 70.0%
AGTGCCGCATTGCGGGGGGT+GGG - tig0026517:27449-27468 Msa1429500:intron 70.0%
TCACCCCACCCCCCGCAATG+CGG + tig0026517:27456-27475 None:intergenic 70.0%
CGGGGGGTGGGGTGAAACAG+TGG - tig0026517:27461-27480 Msa1429500:intron 70.0%
TCTGCCCGAGCTCCTCCTGC+AGG - tig0026517:28224-28243 Msa1429500:CDS 70.0%
GTGCCGCATTGCGGGGGGTG+GGG - tig0026517:27450-27469 Msa1429500:intron 75.0%
Chromosome Type Strat End Strand Name
tig0026517 gene 24639 28657 24639 ID=Msa1429500;Name=Msa1429500
tig0026517 mRNA 24639 28657 24639 ID=Msa1429500-mRNA-1;Parent=Msa1429500;Name=Msa1429500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=388|1|1|1|0.83|0.85|7|320|258
tig0026517 exon 24639 24961 24639 ID=Msa1429500-mRNA-1:exon:6568;Parent=Msa1429500-mRNA-1
tig0026517 exon 25037 25092 25037 ID=Msa1429500-mRNA-1:exon:6567;Parent=Msa1429500-mRNA-1
tig0026517 exon 26574 26722 26574 ID=Msa1429500-mRNA-1:exon:6566;Parent=Msa1429500-mRNA-1
tig0026517 exon 26830 26939 26830 ID=Msa1429500-mRNA-1:exon:6565;Parent=Msa1429500-mRNA-1
tig0026517 exon 27625 27712 27625 ID=Msa1429500-mRNA-1:exon:6564;Parent=Msa1429500-mRNA-1
tig0026517 exon 27823 28126 27823 ID=Msa1429500-mRNA-1:exon:6563;Parent=Msa1429500-mRNA-1
tig0026517 exon 28203 28657 28203 ID=Msa1429500-mRNA-1:exon:6562;Parent=Msa1429500-mRNA-1
tig0026517 five_prime_UTR 28270 28657 28270 ID=Msa1429500-mRNA-1:five_prime_utr;Parent=Msa1429500-mRNA-1
tig0026517 CDS 28203 28269 28203 ID=Msa1429500-mRNA-1:cds;Parent=Msa1429500-mRNA-1
tig0026517 CDS 27823 28126 27823 ID=Msa1429500-mRNA-1:cds;Parent=Msa1429500-mRNA-1
tig0026517 CDS 27625 27712 27625 ID=Msa1429500-mRNA-1:cds;Parent=Msa1429500-mRNA-1
tig0026517 CDS 26830 26939 26830 ID=Msa1429500-mRNA-1:cds;Parent=Msa1429500-mRNA-1
tig0026517 CDS 26574 26722 26574 ID=Msa1429500-mRNA-1:cds;Parent=Msa1429500-mRNA-1
tig0026517 CDS 25037 25092 25037 ID=Msa1429500-mRNA-1:cds;Parent=Msa1429500-mRNA-1
tig0026517 CDS 24959 24961 24959 ID=Msa1429500-mRNA-1:cds;Parent=Msa1429500-mRNA-1
tig0026517 three_prime_UTR 24639 24958 24639 ID=Msa1429500-mRNA-1:three_prime_utr;Parent=Msa1429500-mRNA-1
Gene Sequence

>Msa1429500

ATGGCTTCCCCTAACCAAAACTTCGTCTACACCGCCAAACTCGCTGAACAAGCCGAACGCTACGAAGAAATGGTTGATGCGATGAAGAATGTTGCGAAACTCAATGTTGAATTAACGGTTGAAGAGAGGAATCTGTTATCAGTTGCTTACAAGAATGTTGTTGGAGCACGTAGGGCTTCTTGGAGGATTCTTTCGTCAATTGAGCAGCGAGAAGAAGCGAAAGGGAGTGATGTGAATGTCAATCGGATCAAGGAGTATCGGAAAAAAGTTGAATCAGAGTTGGCTGATGTTTGTAATGATATTATGACTGTGATTGATGATCATCTTATTCCGAATTCTTCTGGTGAATCTAATGTGTTCTATTACAAAATGAAAGGCGATTATTATCGTTATCTGGCTGAGTTTAAGAGCGGTGATGAGAGGAAAGAGGCTGCTGATCAATCTTTGAAAGCGTATCAGGAAGCCTCCACTGCTGCAGAGGCTGAGTTACCTCCCACACATCCCATCAGACTGGGTTTGGCTTTGAACTTCTCTGTGTTCTATTATGAAATCTTGAACTCTCCTGAAAGGGCTTGTCACCTTGCCAAGCAGGCATTTGATGTAGCAATCGCTGAGTTGGATTCTCTCAATGAGGAATCTTACAAAGACAGCACACTGATCATGCAGCTTCTGAGGGACAACCTGACATTGTGGACTTCTGACATTCCTGAGGAAGGAGTCGAGGAACAAAAGGCAGAATCTGCCCGAGCTCCTCCTGCAGGAGATAATGCAGAGTAA
Protein sequence

>Msa1429500

MASPNQNFVYTAKLAEQAERYEEMVDAMKNVAKLNVELTVEERNLLSVAYKNVVGARRASWRILSSIEQREEAKGSDVNVNRIKEYRKKVESELADVCNDIMTVIDDHLIPNSSGESNVFYYKMKGDYYRYLAEFKSGDERKEAADQSLKAYQEASTAAEAELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDVAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDIPEEGVEEQKAESARAPPAGDNAE*