AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0318810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318810 MtrunA17_Chr2g0292701 98.062 258 5 0 1 258 1 258 0.0 530
Msa0318810 MtrunA17_Chr2g0292061 55.779 199 86 1 62 258 77 275 5.90e-80 242
Msa0318810 MtrunA17_Chr1g0209981 38.308 201 118 1 64 258 14 214 3.47e-50 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0318810 AT2G34690.1 50.500 200 97 2 61 258 7 206 2.27e-75 228
Msa0318810 AT4G39670.1 38.498 213 124 1 53 258 17 229 1.27e-56 181

Find 53 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAAGACATTACAATCTA+TGG 0.256900 2_4:+17948725 Msa0318810:CDS
TATGAAGGATGCAGTTTCTA+AGG 0.268043 2_4:+17949623 Msa0318810:CDS
GAAAGCCAACACTACCAAAA+AGG 0.279280 2_4:-17948123 None:intergenic
GATCTTTCTTGAAAGAGAAT+TGG 0.295495 2_4:+17949937 Msa0318810:CDS
CTATATAGCTGCTGCTTTGT+AGG 0.307812 2_4:-17949720 None:intergenic
CAGAGAGTAATCAATTTCTT+TGG 0.308540 2_4:+17950049 Msa0318810:three_prime_UTR
CTACAAAGCAGCAGCTATAT+AGG 0.318496 2_4:+17949721 Msa0318810:CDS
CTGATATGTAAGTTTCCATT+AGG 0.336028 2_4:-17949883 None:intergenic
AGATTGGTGAACCTTCTAAA+TGG 0.387866 2_4:+17949964 Msa0318810:exon
ATCTTTCTTGAAAGAGAATT+GGG 0.389564 2_4:+17949938 Msa0318810:CDS
ATCTTCAGCAAAGGTCCTAA+TGG 0.396822 2_4:+17949868 Msa0318810:CDS
TATTTAATTCATATCATGGT+TGG 0.402091 2_4:+17949658 Msa0318810:CDS
CAGATATTTAATTCATATCA+TGG 0.406954 2_4:+17949654 Msa0318810:CDS
ATATAATATTTCTTCTATCA+TGG 0.410725 2_4:+17947811 Msa0318810:exon
TATATAGCTGCTGCTTTGTA+GGG 0.411513 2_4:-17949719 None:intergenic
CAACATGTACATCAGAGAAA+AGG 0.414705 2_4:+17947845 Msa0318810:CDS
AAAGAGAATTGGGTATAGAT+TGG 0.416344 2_4:+17949948 Msa0318810:CDS
CGTAATCCATCTCAATGAAC+TGG 0.419032 2_4:-17948150 None:intergenic
ATTTAATTCATATCATGGTT+GGG 0.427704 2_4:+17949659 Msa0318810:CDS
GAGTTCAAGTTCTGAAGGTT+CGG 0.442457 2_4:-17947697 None:intergenic
AGCAGCTATATAGGAAACTC+AGG 0.479768 2_4:+17949730 Msa0318810:CDS
AACATGTACATCAGAGAAAA+GGG 0.482428 2_4:+17947846 Msa0318810:CDS
TCATTTCCAGTTCATTGAGA+TGG 0.485324 2_4:+17948144 Msa0318810:CDS
AATGTATATATATGAAGATA+AGG 0.495269 2_4:+17947754 Msa0318810:five_prime_UTR
TCAGAAAGGCTGTTGCTGTA+AGG 0.498928 2_4:+17949685 Msa0318810:CDS
TATAGGAAACTCAGGGAAGA+TGG 0.505472 2_4:+17949738 Msa0318810:CDS
TGGCAGGGGAAATTCTATGA+AGG 0.521322 2_4:+17949608 Msa0318810:intron
CAGAAAAGAACAGCAGCAAT+CGG 0.537826 2_4:+17947913 Msa0318810:CDS
TCAATGTATCGGAGTAGAGG+TGG 0.541676 2_4:-17949911 None:intergenic
CAATGTATCGGAGTAGAGGT+GGG 0.549365 2_4:-17949910 None:intergenic
AGGATATCATAAGAACAAGA+AGG 0.555519 2_4:+17947963 Msa0318810:CDS
AAGATAAGGTGCAAACACTA+AGG 0.557108 2_4:+17947768 Msa0318810:five_prime_UTR
ACTAATTCTGTAAGAAAACA+AGG 0.557315 2_4:+17948765 Msa0318810:CDS
CGTCAACGAAAATATGATTG+AGG 0.562192 2_4:+17948063 Msa0318810:CDS
TCATGGTTGGGCTCTCAGAA+AGG 0.563530 2_4:+17949671 Msa0318810:CDS
GCAATGAGTTCAAGTTCTGA+AGG 0.574219 2_4:-17947702 None:intergenic
AGCTACAAAAGAACATGCAC+GGG 0.576548 2_4:-17948098 None:intergenic
TGCTGTAGAATCTTCAGCAA+AGG 0.582382 2_4:+17949859 Msa0318810:intron
GAGCTACAAAAGAACATGCA+CGG 0.605655 2_4:-17948099 None:intergenic
GGATATCATAAGAACAAGAA+GGG 0.607744 2_4:+17947964 Msa0318810:CDS
ATAGCTGCTGCTTTGTAGGG+AGG 0.616762 2_4:-17949716 None:intergenic
AATGTATCGGAGTAGAGGTG+GGG 0.625612 2_4:-17949909 None:intergenic
AAAGGGATTAAAGCATGTGG+TGG 0.626095 2_4:+17947863 Msa0318810:CDS
ACGTGGACTAGAATTTCTCA+AGG 0.643065 2_4:+17948818 Msa0318810:CDS
TGAGATGGATTACGTTACCA+AGG 0.649858 2_4:+17948159 Msa0318810:CDS
ATGTGTGTGAATGTGTTGAG+TGG 0.664508 2_4:-17947727 None:intergenic
GCAGCTATATAGGAAACTCA+GGG 0.664510 2_4:+17949731 Msa0318810:CDS
ACAGGTTAATGACATAGCAG+AGG 0.680038 2_4:+17948692 Msa0318810:intron
CTAATTCTGTAAGAAAACAA+GGG 0.681202 2_4:+17948766 Msa0318810:CDS
TATCATAAGAACAAGAAGGG+TGG 0.683989 2_4:+17947967 Msa0318810:CDS
AGAAAAGGGATTAAAGCATG+TGG 0.694132 2_4:+17947860 Msa0318810:CDS
TGATCATGTCGACAACAACA+CGG 0.696457 2_4:+17947940 Msa0318810:CDS
TCATGTCGACAACAACACGG+AGG 0.825209 2_4:+17947943 Msa0318810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGATAATCAAATTAAATA+TGG - chr2_4:17948655-17948674 None:intergenic 10.0%
!! AAAGTTAAAAACATTAATTA+AGG - chr2_4:17948998-17949017 None:intergenic 10.0%
!!! CATTTTTTTTTTTTTTTTTG+AGG - chr2_4:17949049-17949068 None:intergenic 10.0%
!! AAAATAAAAAAAATTGAAAG+TGG + chr2_4:17949343-17949362 Msa0318810:intron 10.0%
!! TATGATAATCAAATTAAATA+TGG - chr2_4:17948655-17948674 None:intergenic 10.0%
!! AAAGTTAAAAACATTAATTA+AGG - chr2_4:17948998-17949017 None:intergenic 10.0%
!!! CATTTTTTTTTTTTTTTTTG+AGG - chr2_4:17949049-17949068 None:intergenic 10.0%
!! AAAATAAAAAAAATTGAAAG+TGG + chr2_4:17949343-17949362 Msa0318810:intron 10.0%
!! AATGTATATATATGAAGATA+AGG + chr2_4:17947754-17947773 Msa0318810:five_prime_UTR 15.0%
!! ATATAATATTTCTTCTATCA+TGG + chr2_4:17947811-17947830 Msa0318810:exon 15.0%
!! TATTATTAATAACATATGTG+TGG + chr2_4:17948543-17948562 Msa0318810:intron 15.0%
!!! TTTTATTTTCAAAAGATTTC+TGG - chr2_4:17948799-17948818 None:intergenic 15.0%
!!! TTTTTTTATTTTTAGTCCTT+GGG - chr2_4:17949335-17949354 None:intergenic 15.0%
!!! TTTTTTTTATTTTTAGTCCT+TGG - chr2_4:17949336-17949355 None:intergenic 15.0%
!! TAAATATCATAATTCATAAC+TGG - chr2_4:17949815-17949834 None:intergenic 15.0%
!! AATGTATATATATGAAGATA+AGG + chr2_4:17947754-17947773 Msa0318810:five_prime_UTR 15.0%
!! ATATAATATTTCTTCTATCA+TGG + chr2_4:17947811-17947830 Msa0318810:exon 15.0%
!! TATTATTAATAACATATGTG+TGG + chr2_4:17948543-17948562 Msa0318810:intron 15.0%
!!! TTTTATTTTCAAAAGATTTC+TGG - chr2_4:17948799-17948818 None:intergenic 15.0%
!!! TTTTTTTATTTTTAGTCCTT+GGG - chr2_4:17949335-17949354 None:intergenic 15.0%
!!! TTTTTTTTATTTTTAGTCCT+TGG - chr2_4:17949336-17949355 None:intergenic 15.0%
!! TAAATATCATAATTCATAAC+TGG - chr2_4:17949815-17949834 None:intergenic 15.0%
!! AATAATAATAACTAGTGTAC+TGG - chr2_4:17948192-17948211 None:intergenic 20.0%
!! TTAAATTATTACTATGTGTC+CGG - chr2_4:17948281-17948300 None:intergenic 20.0%
!!! TATTTATGCAAGAGTATATA+TGG + chr2_4:17948440-17948459 Msa0318810:intron 20.0%
!!! TGATTATCATATGATTTTGA+TGG + chr2_4:17948664-17948683 Msa0318810:intron 20.0%
!!! AATCTTTTGAAAATAAAACG+TGG + chr2_4:17948801-17948820 Msa0318810:CDS 20.0%
!! ATTAAGGATGTTAAAAGTAA+GGG - chr2_4:17948982-17949001 None:intergenic 20.0%
!! AATTAAGGATGTTAAAAGTA+AGG - chr2_4:17948983-17949002 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTGAGGGA+TGG - chr2_4:17949044-17949063 None:intergenic 20.0%
!! TTAAAGATTACTATTCATCA+AGG - chr2_4:17949140-17949159 None:intergenic 20.0%
!! AAAAATTGAAAGTGGAAAAT+CGG + chr2_4:17949351-17949370 Msa0318810:intron 20.0%
!!! GTTGAAGACAATTTTTTATT+AGG + chr2_4:17949527-17949546 Msa0318810:intron 20.0%
!!! AGACAATTTTTTATTAGGTT+TGG + chr2_4:17949532-17949551 Msa0318810:intron 20.0%
!! CAGATATTTAATTCATATCA+TGG + chr2_4:17949654-17949673 Msa0318810:CDS 20.0%
!! TATTTAATTCATATCATGGT+TGG + chr2_4:17949658-17949677 Msa0318810:CDS 20.0%
!! ATTTAATTCATATCATGGTT+GGG + chr2_4:17949659-17949678 Msa0318810:CDS 20.0%
!!! CATCATTTTAAATGTGTTTA+GGG + chr2_4:17949785-17949804 Msa0318810:intron 20.0%
!! AATACAATGAAAGAAAAGAA+AGG - chr2_4:17949838-17949857 None:intergenic 20.0%
!!! AATAAAGAACTGTTTTTGTT+TGG + chr2_4:17950015-17950034 Msa0318810:three_prime_UTR 20.0%
!! AATAATAATAACTAGTGTAC+TGG - chr2_4:17948192-17948211 None:intergenic 20.0%
!! TTAAATTATTACTATGTGTC+CGG - chr2_4:17948281-17948300 None:intergenic 20.0%
!!! TATTTATGCAAGAGTATATA+TGG + chr2_4:17948440-17948459 Msa0318810:intron 20.0%
!!! TGATTATCATATGATTTTGA+TGG + chr2_4:17948664-17948683 Msa0318810:intron 20.0%
!!! AATCTTTTGAAAATAAAACG+TGG + chr2_4:17948801-17948820 Msa0318810:CDS 20.0%
!! ATTAAGGATGTTAAAAGTAA+GGG - chr2_4:17948982-17949001 None:intergenic 20.0%
!! AATTAAGGATGTTAAAAGTA+AGG - chr2_4:17948983-17949002 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTGAGGGA+TGG - chr2_4:17949044-17949063 None:intergenic 20.0%
!! TTAAAGATTACTATTCATCA+AGG - chr2_4:17949140-17949159 None:intergenic 20.0%
!! AAAAATTGAAAGTGGAAAAT+CGG + chr2_4:17949351-17949370 Msa0318810:intron 20.0%
!!! GTTGAAGACAATTTTTTATT+AGG + chr2_4:17949527-17949546 Msa0318810:intron 20.0%
!!! AGACAATTTTTTATTAGGTT+TGG + chr2_4:17949532-17949551 Msa0318810:intron 20.0%
!! CAGATATTTAATTCATATCA+TGG + chr2_4:17949654-17949673 Msa0318810:CDS 20.0%
!! TATTTAATTCATATCATGGT+TGG + chr2_4:17949658-17949677 Msa0318810:CDS 20.0%
!! ATTTAATTCATATCATGGTT+GGG + chr2_4:17949659-17949678 Msa0318810:CDS 20.0%
!!! CATCATTTTAAATGTGTTTA+GGG + chr2_4:17949785-17949804 Msa0318810:intron 20.0%
!! AATACAATGAAAGAAAAGAA+AGG - chr2_4:17949838-17949857 None:intergenic 20.0%
!!! AATAAAGAACTGTTTTTGTT+TGG + chr2_4:17950015-17950034 Msa0318810:three_prime_UTR 20.0%
! CTTCATATTAAAGATGTATC+TGG - chr2_4:17948377-17948396 None:intergenic 25.0%
! ACATCTTTAATATGAAGTGT+TGG + chr2_4:17948380-17948399 Msa0318810:intron 25.0%
!!! ATGATTTTGATGGTAATAAC+AGG + chr2_4:17948674-17948693 Msa0318810:intron 25.0%
! TTTCAAGACATTACAATCTA+TGG + chr2_4:17948725-17948744 Msa0318810:CDS 25.0%
! ACTAATTCTGTAAGAAAACA+AGG + chr2_4:17948765-17948784 Msa0318810:CDS 25.0%
! CTAATTCTGTAAGAAAACAA+GGG + chr2_4:17948766-17948785 Msa0318810:CDS 25.0%
!!! TTTTCAAAAGATTTCTGGAA+TGG - chr2_4:17948794-17948813 None:intergenic 25.0%
!! GATATATGCTTTTCATATCT+TGG + chr2_4:17948927-17948946 Msa0318810:intron 25.0%
! AATCTTTAAGCATCTATCTT+TGG + chr2_4:17949151-17949170 Msa0318810:intron 25.0%
! ACACCTTCAATAAAAAATGT+CGG + chr2_4:17949274-17949293 Msa0318810:intron 25.0%
! AAGGTTAAAGAATTGTAAGT+GGG - chr2_4:17949392-17949411 None:intergenic 25.0%
! AAAGGTTAAAGAATTGTAAG+TGG - chr2_4:17949393-17949412 None:intergenic 25.0%
! CAAAAAAGACTACATTATTG+AGG - chr2_4:17949475-17949494 None:intergenic 25.0%
!! CCTAAACACATTTAAAATGA+TGG - chr2_4:17949787-17949806 None:intergenic 25.0%
!! CCATCATTTTAAATGTGTTT+AGG + chr2_4:17949784-17949803 Msa0318810:intron 25.0%
!! GAAAGATCTTTTCAATGTAT+CGG - chr2_4:17949925-17949944 None:intergenic 25.0%
! ATCTTTCTTGAAAGAGAATT+GGG + chr2_4:17949938-17949957 Msa0318810:CDS 25.0%
! AAAAAACACATCCATTTAGA+AGG - chr2_4:17949978-17949997 None:intergenic 25.0%
! CTTCATATTAAAGATGTATC+TGG - chr2_4:17948377-17948396 None:intergenic 25.0%
! ACATCTTTAATATGAAGTGT+TGG + chr2_4:17948380-17948399 Msa0318810:intron 25.0%
!!! ATGATTTTGATGGTAATAAC+AGG + chr2_4:17948674-17948693 Msa0318810:intron 25.0%
! TTTCAAGACATTACAATCTA+TGG + chr2_4:17948725-17948744 Msa0318810:CDS 25.0%
! ACTAATTCTGTAAGAAAACA+AGG + chr2_4:17948765-17948784 Msa0318810:CDS 25.0%
! CTAATTCTGTAAGAAAACAA+GGG + chr2_4:17948766-17948785 Msa0318810:CDS 25.0%
!!! TTTTCAAAAGATTTCTGGAA+TGG - chr2_4:17948794-17948813 None:intergenic 25.0%
!! GATATATGCTTTTCATATCT+TGG + chr2_4:17948927-17948946 Msa0318810:intron 25.0%
! AATCTTTAAGCATCTATCTT+TGG + chr2_4:17949151-17949170 Msa0318810:intron 25.0%
! ACACCTTCAATAAAAAATGT+CGG + chr2_4:17949274-17949293 Msa0318810:intron 25.0%
! AAGGTTAAAGAATTGTAAGT+GGG - chr2_4:17949392-17949411 None:intergenic 25.0%
! AAAGGTTAAAGAATTGTAAG+TGG - chr2_4:17949393-17949412 None:intergenic 25.0%
! CAAAAAAGACTACATTATTG+AGG - chr2_4:17949475-17949494 None:intergenic 25.0%
!! CCTAAACACATTTAAAATGA+TGG - chr2_4:17949787-17949806 None:intergenic 25.0%
!! CCATCATTTTAAATGTGTTT+AGG + chr2_4:17949784-17949803 Msa0318810:intron 25.0%
!! GAAAGATCTTTTCAATGTAT+CGG - chr2_4:17949925-17949944 None:intergenic 25.0%
! ATCTTTCTTGAAAGAGAATT+GGG + chr2_4:17949938-17949957 Msa0318810:CDS 25.0%
! AAAAAACACATCCATTTAGA+AGG - chr2_4:17949978-17949997 None:intergenic 25.0%
AACATGTACATCAGAGAAAA+GGG + chr2_4:17947846-17947865 Msa0318810:CDS 30.0%
AGGATATCATAAGAACAAGA+AGG + chr2_4:17947963-17947982 Msa0318810:CDS 30.0%
GGATATCATAAGAACAAGAA+GGG + chr2_4:17947964-17947983 Msa0318810:CDS 30.0%
ACATACTTGGATTCTATGTA+AGG + chr2_4:17948411-17948430 Msa0318810:intron 30.0%
!! TTTTTATTGAAGGTGTGTCT+CGG - chr2_4:17949270-17949289 None:intergenic 30.0%
TTTAACCTTTAGTGCAAAGA+GGG + chr2_4:17949403-17949422 Msa0318810:intron 30.0%
CAAAAGTCAATATTAGTCCA+AGG - chr2_4:17949446-17949465 None:intergenic 30.0%
! TTATGTTCCAATGTGTGTTT+TGG + chr2_4:17949588-17949607 Msa0318810:intron 30.0%
CTGATATGTAAGTTTCCATT+AGG - chr2_4:17949886-17949905 None:intergenic 30.0%
GATCTTTCTTGAAAGAGAAT+TGG + chr2_4:17949937-17949956 Msa0318810:CDS 30.0%
AAAGAGAATTGGGTATAGAT+TGG + chr2_4:17949948-17949967 Msa0318810:CDS 30.0%
CAGAGAGTAATCAATTTCTT+TGG + chr2_4:17950049-17950068 Msa0318810:three_prime_UTR 30.0%
AACATGTACATCAGAGAAAA+GGG + chr2_4:17947846-17947865 Msa0318810:CDS 30.0%
AGGATATCATAAGAACAAGA+AGG + chr2_4:17947963-17947982 Msa0318810:CDS 30.0%
GGATATCATAAGAACAAGAA+GGG + chr2_4:17947964-17947983 Msa0318810:CDS 30.0%
ACATACTTGGATTCTATGTA+AGG + chr2_4:17948411-17948430 Msa0318810:intron 30.0%
!! TTTTTATTGAAGGTGTGTCT+CGG - chr2_4:17949270-17949289 None:intergenic 30.0%
TTTAACCTTTAGTGCAAAGA+GGG + chr2_4:17949403-17949422 Msa0318810:intron 30.0%
CAAAAGTCAATATTAGTCCA+AGG - chr2_4:17949446-17949465 None:intergenic 30.0%
! TTATGTTCCAATGTGTGTTT+TGG + chr2_4:17949588-17949607 Msa0318810:intron 30.0%
CTGATATGTAAGTTTCCATT+AGG - chr2_4:17949886-17949905 None:intergenic 30.0%
GATCTTTCTTGAAAGAGAAT+TGG + chr2_4:17949937-17949956 Msa0318810:CDS 30.0%
AAAGAGAATTGGGTATAGAT+TGG + chr2_4:17949948-17949967 Msa0318810:CDS 30.0%
CAGAGAGTAATCAATTTCTT+TGG + chr2_4:17950049-17950068 Msa0318810:three_prime_UTR 30.0%
AAGATAAGGTGCAAACACTA+AGG + chr2_4:17947768-17947787 Msa0318810:five_prime_UTR 35.0%
CAACATGTACATCAGAGAAA+AGG + chr2_4:17947845-17947864 Msa0318810:CDS 35.0%
AGAAAAGGGATTAAAGCATG+TGG + chr2_4:17947860-17947879 Msa0318810:CDS 35.0%
TATCATAAGAACAAGAAGGG+TGG + chr2_4:17947967-17947986 Msa0318810:CDS 35.0%
CGTCAACGAAAATATGATTG+AGG + chr2_4:17948063-17948082 Msa0318810:CDS 35.0%
AAAGCCAACACTACCAAAAA+GGG - chr2_4:17948125-17948144 None:intergenic 35.0%
TCATTTCCAGTTCATTGAGA+TGG + chr2_4:17948144-17948163 Msa0318810:CDS 35.0%
ACGACACTGACACATATATA+TGG - chr2_4:17948328-17948347 None:intergenic 35.0%
!! AATATGAAGTGTTGGTGACA+CGG + chr2_4:17948388-17948407 Msa0318810:intron 35.0%
AAACACTGACACACATCAAA+TGG - chr2_4:17948902-17948921 None:intergenic 35.0%
!!! GCACCGACATTTTTTATTGA+AGG - chr2_4:17949280-17949299 None:intergenic 35.0%
! ACTCACCAAGTTTAAAACCT+CGG - chr2_4:17949305-17949324 None:intergenic 35.0%
CTTTAACCTTTAGTGCAAAG+AGG + chr2_4:17949402-17949421 Msa0318810:intron 35.0%
TATGAAGGATGCAGTTTCTA+AGG + chr2_4:17949623-17949642 Msa0318810:CDS 35.0%
!! TATATAGCTGCTGCTTTGTA+GGG - chr2_4:17949722-17949741 None:intergenic 35.0%
! TTTTCAATGTATCGGAGTAG+AGG - chr2_4:17949917-17949936 None:intergenic 35.0%
AGATTGGTGAACCTTCTAAA+TGG + chr2_4:17949964-17949983 Msa0318810:exon 35.0%
AAGATAAGGTGCAAACACTA+AGG + chr2_4:17947768-17947787 Msa0318810:five_prime_UTR 35.0%
CAACATGTACATCAGAGAAA+AGG + chr2_4:17947845-17947864 Msa0318810:CDS 35.0%
AGAAAAGGGATTAAAGCATG+TGG + chr2_4:17947860-17947879 Msa0318810:CDS 35.0%
TATCATAAGAACAAGAAGGG+TGG + chr2_4:17947967-17947986 Msa0318810:CDS 35.0%
CGTCAACGAAAATATGATTG+AGG + chr2_4:17948063-17948082 Msa0318810:CDS 35.0%
AAAGCCAACACTACCAAAAA+GGG - chr2_4:17948125-17948144 None:intergenic 35.0%
TCATTTCCAGTTCATTGAGA+TGG + chr2_4:17948144-17948163 Msa0318810:CDS 35.0%
ACGACACTGACACATATATA+TGG - chr2_4:17948328-17948347 None:intergenic 35.0%
!! AATATGAAGTGTTGGTGACA+CGG + chr2_4:17948388-17948407 Msa0318810:intron 35.0%
AAACACTGACACACATCAAA+TGG - chr2_4:17948902-17948921 None:intergenic 35.0%
!!! GCACCGACATTTTTTATTGA+AGG - chr2_4:17949280-17949299 None:intergenic 35.0%
! ACTCACCAAGTTTAAAACCT+CGG - chr2_4:17949305-17949324 None:intergenic 35.0%
CTTTAACCTTTAGTGCAAAG+AGG + chr2_4:17949402-17949421 Msa0318810:intron 35.0%
TATGAAGGATGCAGTTTCTA+AGG + chr2_4:17949623-17949642 Msa0318810:CDS 35.0%
!! TATATAGCTGCTGCTTTGTA+GGG - chr2_4:17949722-17949741 None:intergenic 35.0%
! TTTTCAATGTATCGGAGTAG+AGG - chr2_4:17949917-17949936 None:intergenic 35.0%
AGATTGGTGAACCTTCTAAA+TGG + chr2_4:17949964-17949983 Msa0318810:exon 35.0%
!! GAGTTCAAGTTCTGAAGGTT+CGG - chr2_4:17947700-17947719 None:intergenic 40.0%
! GCAATGAGTTCAAGTTCTGA+AGG - chr2_4:17947705-17947724 None:intergenic 40.0%
ATGTGTGTGAATGTGTTGAG+TGG - chr2_4:17947730-17947749 None:intergenic 40.0%
AAAGGGATTAAAGCATGTGG+TGG + chr2_4:17947863-17947882 Msa0318810:CDS 40.0%
CAGAAAAGAACAGCAGCAAT+CGG + chr2_4:17947913-17947932 Msa0318810:CDS 40.0%
TGATCATGTCGACAACAACA+CGG + chr2_4:17947940-17947959 Msa0318810:CDS 40.0%
AGCTACAAAAGAACATGCAC+GGG - chr2_4:17948101-17948120 None:intergenic 40.0%
GAGCTACAAAAGAACATGCA+CGG - chr2_4:17948102-17948121 None:intergenic 40.0%
! TCTTTTGTAGCTCCCCTTTT+TGG + chr2_4:17948109-17948128 Msa0318810:CDS 40.0%
AAGCCAACACTACCAAAAAG+GGG - chr2_4:17948124-17948143 None:intergenic 40.0%
GAAAGCCAACACTACCAAAA+AGG - chr2_4:17948126-17948145 None:intergenic 40.0%
CGTAATCCATCTCAATGAAC+TGG - chr2_4:17948153-17948172 None:intergenic 40.0%
!! TGAGATGGATTACGTTACCA+AGG + chr2_4:17948159-17948178 Msa0318810:CDS 40.0%
ACTTACTCATACATGTACGC+CGG + chr2_4:17948259-17948278 Msa0318810:intron 40.0%
CTTGGATTCTATGTAAGGAG+AGG + chr2_4:17948416-17948435 Msa0318810:intron 40.0%
TATATGATGAGCTCGCAACA+AGG - chr2_4:17948630-17948649 None:intergenic 40.0%
ACAGGTTAATGACATAGCAG+AGG + chr2_4:17948692-17948711 Msa0318810:intron 40.0%
!! ACGTGGACTAGAATTTCTCA+AGG + chr2_4:17948818-17948837 Msa0318810:CDS 40.0%
AGTCATCAGATGAGTTTCGT+TGG - chr2_4:17949078-17949097 None:intergenic 40.0%
CGACACAAATACTAACACGT+TGG + chr2_4:17949177-17949196 Msa0318810:intron 40.0%
!!! TGCTACCGAGGTTTTAAACT+TGG + chr2_4:17949297-17949316 Msa0318810:intron 40.0%
!!! TTCCAATGTGTGTTTTGGCA+GGG + chr2_4:17949593-17949612 Msa0318810:intron 40.0%
!! CTATATAGCTGCTGCTTTGT+AGG - chr2_4:17949723-17949742 None:intergenic 40.0%
CTACAAAGCAGCAGCTATAT+AGG + chr2_4:17949721-17949740 Msa0318810:CDS 40.0%
AGCAGCTATATAGGAAACTC+AGG + chr2_4:17949730-17949749 Msa0318810:CDS 40.0%
GCAGCTATATAGGAAACTCA+GGG + chr2_4:17949731-17949750 Msa0318810:CDS 40.0%
TATAGGAAACTCAGGGAAGA+TGG + chr2_4:17949738-17949757 Msa0318810:CDS 40.0%
TGCTGTAGAATCTTCAGCAA+AGG + chr2_4:17949859-17949878 Msa0318810:intron 40.0%
ATCTTCAGCAAAGGTCCTAA+TGG + chr2_4:17949868-17949887 Msa0318810:CDS 40.0%
!! GAGTTCAAGTTCTGAAGGTT+CGG - chr2_4:17947700-17947719 None:intergenic 40.0%
! GCAATGAGTTCAAGTTCTGA+AGG - chr2_4:17947705-17947724 None:intergenic 40.0%
ATGTGTGTGAATGTGTTGAG+TGG - chr2_4:17947730-17947749 None:intergenic 40.0%
AAAGGGATTAAAGCATGTGG+TGG + chr2_4:17947863-17947882 Msa0318810:CDS 40.0%
CAGAAAAGAACAGCAGCAAT+CGG + chr2_4:17947913-17947932 Msa0318810:CDS 40.0%
TGATCATGTCGACAACAACA+CGG + chr2_4:17947940-17947959 Msa0318810:CDS 40.0%
AGCTACAAAAGAACATGCAC+GGG - chr2_4:17948101-17948120 None:intergenic 40.0%
GAGCTACAAAAGAACATGCA+CGG - chr2_4:17948102-17948121 None:intergenic 40.0%
! TCTTTTGTAGCTCCCCTTTT+TGG + chr2_4:17948109-17948128 Msa0318810:CDS 40.0%
AAGCCAACACTACCAAAAAG+GGG - chr2_4:17948124-17948143 None:intergenic 40.0%
GAAAGCCAACACTACCAAAA+AGG - chr2_4:17948126-17948145 None:intergenic 40.0%
CGTAATCCATCTCAATGAAC+TGG - chr2_4:17948153-17948172 None:intergenic 40.0%
!! TGAGATGGATTACGTTACCA+AGG + chr2_4:17948159-17948178 Msa0318810:CDS 40.0%
ACTTACTCATACATGTACGC+CGG + chr2_4:17948259-17948278 Msa0318810:intron 40.0%
CTTGGATTCTATGTAAGGAG+AGG + chr2_4:17948416-17948435 Msa0318810:intron 40.0%
TATATGATGAGCTCGCAACA+AGG - chr2_4:17948630-17948649 None:intergenic 40.0%
ACAGGTTAATGACATAGCAG+AGG + chr2_4:17948692-17948711 Msa0318810:intron 40.0%
!! ACGTGGACTAGAATTTCTCA+AGG + chr2_4:17948818-17948837 Msa0318810:CDS 40.0%
AGTCATCAGATGAGTTTCGT+TGG - chr2_4:17949078-17949097 None:intergenic 40.0%
CGACACAAATACTAACACGT+TGG + chr2_4:17949177-17949196 Msa0318810:intron 40.0%
!!! TGCTACCGAGGTTTTAAACT+TGG + chr2_4:17949297-17949316 Msa0318810:intron 40.0%
!!! TTCCAATGTGTGTTTTGGCA+GGG + chr2_4:17949593-17949612 Msa0318810:intron 40.0%
!! CTATATAGCTGCTGCTTTGT+AGG - chr2_4:17949723-17949742 None:intergenic 40.0%
CTACAAAGCAGCAGCTATAT+AGG + chr2_4:17949721-17949740 Msa0318810:CDS 40.0%
AGCAGCTATATAGGAAACTC+AGG + chr2_4:17949730-17949749 Msa0318810:CDS 40.0%
GCAGCTATATAGGAAACTCA+GGG + chr2_4:17949731-17949750 Msa0318810:CDS 40.0%
TATAGGAAACTCAGGGAAGA+TGG + chr2_4:17949738-17949757 Msa0318810:CDS 40.0%
TGCTGTAGAATCTTCAGCAA+AGG + chr2_4:17949859-17949878 Msa0318810:intron 40.0%
ATCTTCAGCAAAGGTCCTAA+TGG + chr2_4:17949868-17949887 Msa0318810:CDS 40.0%
!! CTGCTGTTCTTTTCTGGCAT+TGG - chr2_4:17947909-17947928 None:intergenic 45.0%
! CGATTGCTGCTGTTCTTTTC+TGG - chr2_4:17947915-17947934 None:intergenic 45.0%
! AGTGTACTGGTAGCTTACCT+TGG - chr2_4:17948179-17948198 None:intergenic 45.0%
TTGACACACTCAGAGAGACT+TGG + chr2_4:17948575-17948594 Msa0318810:intron 45.0%
! AGGGTGATAGTGACATGCTT+TGG - chr2_4:17948963-17948982 None:intergenic 45.0%
TTGAGGGATGGTTCAGTCAT+TGG - chr2_4:17949032-17949051 None:intergenic 45.0%
!! AAAAAATGTCGGTGCTACCG+AGG + chr2_4:17949285-17949304 Msa0318810:intron 45.0%
!!! GTTCCAATGTGTGTTTTGGC+AGG + chr2_4:17949592-17949611 Msa0318810:intron 45.0%
!!! TCCAATGTGTGTTTTGGCAG+GGG + chr2_4:17949594-17949613 Msa0318810:intron 45.0%
TGGCAGGGGAAATTCTATGA+AGG + chr2_4:17949608-17949627 Msa0318810:intron 45.0%
TCAGAAAGGCTGTTGCTGTA+AGG + chr2_4:17949685-17949704 Msa0318810:CDS 45.0%
AATGTATCGGAGTAGAGGTG+GGG - chr2_4:17949912-17949931 None:intergenic 45.0%
CAATGTATCGGAGTAGAGGT+GGG - chr2_4:17949913-17949932 None:intergenic 45.0%
TCAATGTATCGGAGTAGAGG+TGG - chr2_4:17949914-17949933 None:intergenic 45.0%
!! CTGCTGTTCTTTTCTGGCAT+TGG - chr2_4:17947909-17947928 None:intergenic 45.0%
! CGATTGCTGCTGTTCTTTTC+TGG - chr2_4:17947915-17947934 None:intergenic 45.0%
! AGTGTACTGGTAGCTTACCT+TGG - chr2_4:17948179-17948198 None:intergenic 45.0%
TTGACACACTCAGAGAGACT+TGG + chr2_4:17948575-17948594 Msa0318810:intron 45.0%
! AGGGTGATAGTGACATGCTT+TGG - chr2_4:17948963-17948982 None:intergenic 45.0%
TTGAGGGATGGTTCAGTCAT+TGG - chr2_4:17949032-17949051 None:intergenic 45.0%
!! AAAAAATGTCGGTGCTACCG+AGG + chr2_4:17949285-17949304 Msa0318810:intron 45.0%
!!! GTTCCAATGTGTGTTTTGGC+AGG + chr2_4:17949592-17949611 Msa0318810:intron 45.0%
!!! TCCAATGTGTGTTTTGGCAG+GGG + chr2_4:17949594-17949613 Msa0318810:intron 45.0%
TGGCAGGGGAAATTCTATGA+AGG + chr2_4:17949608-17949627 Msa0318810:intron 45.0%
TCAGAAAGGCTGTTGCTGTA+AGG + chr2_4:17949685-17949704 Msa0318810:CDS 45.0%
AATGTATCGGAGTAGAGGTG+GGG - chr2_4:17949912-17949931 None:intergenic 45.0%
CAATGTATCGGAGTAGAGGT+GGG - chr2_4:17949913-17949932 None:intergenic 45.0%
TCAATGTATCGGAGTAGAGG+TGG - chr2_4:17949914-17949933 None:intergenic 45.0%
!!! ATTTTTTTTTTTTTTTTTGA+GGG - chr2_4:17949048-17949067 None:intergenic 5.0%
!!! TTATTGTTTTAAAATTTTAT+CGG - chr2_4:17949205-17949224 None:intergenic 5.0%
!!! ATTTTTTTTTTTTTTTTTGA+GGG - chr2_4:17949048-17949067 None:intergenic 5.0%
!!! TTATTGTTTTAAAATTTTAT+CGG - chr2_4:17949205-17949224 None:intergenic 5.0%
TCATGTCGACAACAACACGG+AGG + chr2_4:17947943-17947962 Msa0318810:CDS 50.0%
!! CTTTTCATCGACTGCTGTCG+TGG - chr2_4:17947996-17948015 None:intergenic 50.0%
!!! GCTCCCCTTTTTGGTAGTGT+TGG + chr2_4:17948118-17948137 Msa0318810:CDS 50.0%
!! GTTGGTGACACGGACATACT+TGG + chr2_4:17948398-17948417 Msa0318810:intron 50.0%
CACACGTGTCAGTATCGTGT+CGG + chr2_4:17949241-17949260 Msa0318810:intron 50.0%
TTGGTGAGTCGCAAAACCCA+AGG + chr2_4:17949316-17949335 Msa0318810:intron 50.0%
!! CTGCGTGGAAAAAGTGTCCT+TGG + chr2_4:17949426-17949445 Msa0318810:intron 50.0%
TCCCCTGCCAAAACACACAT+TGG - chr2_4:17949598-17949617 None:intergenic 50.0%
TCATGGTTGGGCTCTCAGAA+AGG + chr2_4:17949671-17949690 Msa0318810:CDS 50.0%
!! ATAGCTGCTGCTTTGTAGGG+AGG - chr2_4:17949719-17949738 None:intergenic 50.0%
TCATGTCGACAACAACACGG+AGG + chr2_4:17947943-17947962 Msa0318810:CDS 50.0%
!! CTTTTCATCGACTGCTGTCG+TGG - chr2_4:17947996-17948015 None:intergenic 50.0%
!!! GCTCCCCTTTTTGGTAGTGT+TGG + chr2_4:17948118-17948137 Msa0318810:CDS 50.0%
!! GTTGGTGACACGGACATACT+TGG + chr2_4:17948398-17948417 Msa0318810:intron 50.0%
CACACGTGTCAGTATCGTGT+CGG + chr2_4:17949241-17949260 Msa0318810:intron 50.0%
TTGGTGAGTCGCAAAACCCA+AGG + chr2_4:17949316-17949335 Msa0318810:intron 50.0%
!! CTGCGTGGAAAAAGTGTCCT+TGG + chr2_4:17949426-17949445 Msa0318810:intron 50.0%
TCCCCTGCCAAAACACACAT+TGG - chr2_4:17949598-17949617 None:intergenic 50.0%
TCATGGTTGGGCTCTCAGAA+AGG + chr2_4:17949671-17949690 Msa0318810:CDS 50.0%
!! ATAGCTGCTGCTTTGTAGGG+AGG - chr2_4:17949719-17949738 None:intergenic 50.0%
CGCAGCCCTCTTTGCACTAA+AGG - chr2_4:17949411-17949430 None:intergenic 55.0%
TTAGTGCAAAGAGGGCTGCG+TGG + chr2_4:17949411-17949430 Msa0318810:intron 55.0%
CGCAGCCCTCTTTGCACTAA+AGG - chr2_4:17949411-17949430 None:intergenic 55.0%
TTAGTGCAAAGAGGGCTGCG+TGG + chr2_4:17949411-17949430 Msa0318810:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 17947676 17950117 17947676 ID=Msa0318810;Name=Msa0318810
chr2_4 mRNA 17947676 17950117 17947676 ID=Msa0318810-mRNA-1;Parent=Msa0318810;Name=Msa0318810-mRNA-1;_AED=0.03;_eAED=0.03;_QI=154|1|1|1|1|1|4|144|258
chr2_4 exon 17947676 17948180 17947676 ID=Msa0318810-mRNA-1:exon:6633;Parent=Msa0318810-mRNA-1
chr2_4 exon 17948696 17948868 17948696 ID=Msa0318810-mRNA-1:exon:6634;Parent=Msa0318810-mRNA-1
chr2_4 exon 17949614 17949759 17949614 ID=Msa0318810-mRNA-1:exon:6635;Parent=Msa0318810-mRNA-1
chr2_4 exon 17949867 17950117 17949867 ID=Msa0318810-mRNA-1:exon:6636;Parent=Msa0318810-mRNA-1
chr2_4 five_prime_UTR 17947676 17947829 17947676 ID=Msa0318810-mRNA-1:five_prime_utr;Parent=Msa0318810-mRNA-1
chr2_4 CDS 17947830 17948180 17947830 ID=Msa0318810-mRNA-1:cds;Parent=Msa0318810-mRNA-1
chr2_4 CDS 17948696 17948868 17948696 ID=Msa0318810-mRNA-1:cds;Parent=Msa0318810-mRNA-1
chr2_4 CDS 17949614 17949759 17949614 ID=Msa0318810-mRNA-1:cds;Parent=Msa0318810-mRNA-1
chr2_4 CDS 17949867 17949973 17949867 ID=Msa0318810-mRNA-1:cds;Parent=Msa0318810-mRNA-1
chr2_4 three_prime_UTR 17949974 17950117 17949974 ID=Msa0318810-mRNA-1:three_prime_utr;Parent=Msa0318810-mRNA-1
Gene Sequence

>Msa0318810

ATGGCAAGTAATGAACAACATGTACATCAGAGAAAAGGGATTAAAGCATGTGGTGGTTTTCTGACGTGCTTTTCTGCCAATGCCAGAAAAGAACAGCAGCAATCGGTACATGATCATGTCGACAACAACACGGAGGATATCATAAGAACAAGAAGGGTGGCTTCCACGACAGCAGTCGATGAAAAGCATCTCGCTAAAATCGCAGATGCATTCAAAGAGCTAGCAAATGTCATCGTCAACGAAAATATGATTGAGGTTGCTGCTTTTTCCCGTGCATGTTCTTTTGTAGCTCCCCTTTTTGGTAGTGTTGGCTTTCATTTCCAGTTCATTGAGATGGATTACGTTACCAAGGTTAATGACATAGCAGAGGCATCAAAGTCTTTCAAGACATTACAATCTATGGTTGATCAAGATGTACAAACTAATTCTGTAAGAAAACAAGGGAGCCATTCCAGAAATCTTTTGAAAATAAAACGTGGACTAGAATTTCTCAAGGTGCTATTTGAACAAGTTCTACTCACAGAGGGAAATTCTATGAAGGATGCAGTTTCTAAGGCTTACACACAGATATTTAATTCATATCATGGTTGGGCTCTCAGAAAGGCTGTTGCTGTAAGGTTACATTACCTCCCTACAAAGCAGCAGCTATATAGGAAACTCAGGGAAGATGAATCTTCAGCAAAGGTCCTAATGGAAACTTACATATCAGAATCCCCACCTCTACTCCGATACATTGAAAAGATCTTTCTTGAAAGAGAATTGGGTATAGATTGGTGA

Protein sequence

>Msa0318810

MASNEQHVHQRKGIKACGGFLTCFSANARKEQQQSVHDHVDNNTEDIIRTRRVASTTAVDEKHLAKIADAFKELANVIVNENMIEVAAFSRACSFVAPLFGSVGFHFQFIEMDYVTKVNDIAEASKSFKTLQSMVDQDVQTNSVRKQGSHSRNLLKIKRGLEFLKVLFEQVLLTEGNSMKDAVSKAYTQIFNSYHGWALRKAVAVRLHYLPTKQQLYRKLREDESSAKVLMETYISESPPLLRYIEKIFLERELGIDW*