Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0318810 | XP_003594554.1 | 98.062 | 258 | 5 | 0 | 1 | 258 | 1 | 258 | 0.0 | 530 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0318810 | sp|O64587|ACD11_ARATH | 50.500 | 200 | 97 | 2 | 61 | 258 | 7 | 206 | 2.23e-74 | 228 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0198640 | Msa0318810 | 0.862926 | 3.584823e-64 | -8.615850e-47 |
Msa0215590 | Msa0318810 | 0.809069 | 2.270435e-50 | -8.615850e-47 |
Msa0270170 | Msa0318810 | -0.814826 | 1.264234e-51 | -8.615850e-47 |
Msa0318810 | Msa0333650 | 0.807784 | 4.268875e-50 | -8.615850e-47 |
Msa0318810 | Msa0790440 | -0.815751 | 7.872975e-52 | -8.615850e-47 |
Msa0318810 | Msa1403530 | -0.803018 | 4.258843e-49 | -8.615850e-47 |
Msa0318810 | Msa1418280 | 0.807824 | 4.185406e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0318810 | MtrunA17_Chr2g0292701 | 98.062 | 258 | 5 | 0 | 1 | 258 | 1 | 258 | 0.0 | 530 |
Msa0318810 | MtrunA17_Chr2g0292061 | 55.779 | 199 | 86 | 1 | 62 | 258 | 77 | 275 | 5.90e-80 | 242 |
Msa0318810 | MtrunA17_Chr1g0209981 | 38.308 | 201 | 118 | 1 | 64 | 258 | 14 | 214 | 3.47e-50 | 164 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0318810 | AT2G34690.1 | 50.500 | 200 | 97 | 2 | 61 | 258 | 7 | 206 | 2.27e-75 | 228 |
Msa0318810 | AT4G39670.1 | 38.498 | 213 | 124 | 1 | 53 | 258 | 17 | 229 | 1.27e-56 | 181 |
Find 53 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCAAGACATTACAATCTA+TGG | 0.256900 | 2_4:+17948725 | Msa0318810:CDS |
TATGAAGGATGCAGTTTCTA+AGG | 0.268043 | 2_4:+17949623 | Msa0318810:CDS |
GAAAGCCAACACTACCAAAA+AGG | 0.279280 | 2_4:-17948123 | None:intergenic |
GATCTTTCTTGAAAGAGAAT+TGG | 0.295495 | 2_4:+17949937 | Msa0318810:CDS |
CTATATAGCTGCTGCTTTGT+AGG | 0.307812 | 2_4:-17949720 | None:intergenic |
CAGAGAGTAATCAATTTCTT+TGG | 0.308540 | 2_4:+17950049 | Msa0318810:three_prime_UTR |
CTACAAAGCAGCAGCTATAT+AGG | 0.318496 | 2_4:+17949721 | Msa0318810:CDS |
CTGATATGTAAGTTTCCATT+AGG | 0.336028 | 2_4:-17949883 | None:intergenic |
AGATTGGTGAACCTTCTAAA+TGG | 0.387866 | 2_4:+17949964 | Msa0318810:exon |
ATCTTTCTTGAAAGAGAATT+GGG | 0.389564 | 2_4:+17949938 | Msa0318810:CDS |
ATCTTCAGCAAAGGTCCTAA+TGG | 0.396822 | 2_4:+17949868 | Msa0318810:CDS |
TATTTAATTCATATCATGGT+TGG | 0.402091 | 2_4:+17949658 | Msa0318810:CDS |
CAGATATTTAATTCATATCA+TGG | 0.406954 | 2_4:+17949654 | Msa0318810:CDS |
ATATAATATTTCTTCTATCA+TGG | 0.410725 | 2_4:+17947811 | Msa0318810:exon |
TATATAGCTGCTGCTTTGTA+GGG | 0.411513 | 2_4:-17949719 | None:intergenic |
CAACATGTACATCAGAGAAA+AGG | 0.414705 | 2_4:+17947845 | Msa0318810:CDS |
AAAGAGAATTGGGTATAGAT+TGG | 0.416344 | 2_4:+17949948 | Msa0318810:CDS |
CGTAATCCATCTCAATGAAC+TGG | 0.419032 | 2_4:-17948150 | None:intergenic |
ATTTAATTCATATCATGGTT+GGG | 0.427704 | 2_4:+17949659 | Msa0318810:CDS |
GAGTTCAAGTTCTGAAGGTT+CGG | 0.442457 | 2_4:-17947697 | None:intergenic |
AGCAGCTATATAGGAAACTC+AGG | 0.479768 | 2_4:+17949730 | Msa0318810:CDS |
AACATGTACATCAGAGAAAA+GGG | 0.482428 | 2_4:+17947846 | Msa0318810:CDS |
TCATTTCCAGTTCATTGAGA+TGG | 0.485324 | 2_4:+17948144 | Msa0318810:CDS |
AATGTATATATATGAAGATA+AGG | 0.495269 | 2_4:+17947754 | Msa0318810:five_prime_UTR |
TCAGAAAGGCTGTTGCTGTA+AGG | 0.498928 | 2_4:+17949685 | Msa0318810:CDS |
TATAGGAAACTCAGGGAAGA+TGG | 0.505472 | 2_4:+17949738 | Msa0318810:CDS |
TGGCAGGGGAAATTCTATGA+AGG | 0.521322 | 2_4:+17949608 | Msa0318810:intron |
CAGAAAAGAACAGCAGCAAT+CGG | 0.537826 | 2_4:+17947913 | Msa0318810:CDS |
TCAATGTATCGGAGTAGAGG+TGG | 0.541676 | 2_4:-17949911 | None:intergenic |
CAATGTATCGGAGTAGAGGT+GGG | 0.549365 | 2_4:-17949910 | None:intergenic |
AGGATATCATAAGAACAAGA+AGG | 0.555519 | 2_4:+17947963 | Msa0318810:CDS |
AAGATAAGGTGCAAACACTA+AGG | 0.557108 | 2_4:+17947768 | Msa0318810:five_prime_UTR |
ACTAATTCTGTAAGAAAACA+AGG | 0.557315 | 2_4:+17948765 | Msa0318810:CDS |
CGTCAACGAAAATATGATTG+AGG | 0.562192 | 2_4:+17948063 | Msa0318810:CDS |
TCATGGTTGGGCTCTCAGAA+AGG | 0.563530 | 2_4:+17949671 | Msa0318810:CDS |
GCAATGAGTTCAAGTTCTGA+AGG | 0.574219 | 2_4:-17947702 | None:intergenic |
AGCTACAAAAGAACATGCAC+GGG | 0.576548 | 2_4:-17948098 | None:intergenic |
TGCTGTAGAATCTTCAGCAA+AGG | 0.582382 | 2_4:+17949859 | Msa0318810:intron |
GAGCTACAAAAGAACATGCA+CGG | 0.605655 | 2_4:-17948099 | None:intergenic |
GGATATCATAAGAACAAGAA+GGG | 0.607744 | 2_4:+17947964 | Msa0318810:CDS |
ATAGCTGCTGCTTTGTAGGG+AGG | 0.616762 | 2_4:-17949716 | None:intergenic |
AATGTATCGGAGTAGAGGTG+GGG | 0.625612 | 2_4:-17949909 | None:intergenic |
AAAGGGATTAAAGCATGTGG+TGG | 0.626095 | 2_4:+17947863 | Msa0318810:CDS |
ACGTGGACTAGAATTTCTCA+AGG | 0.643065 | 2_4:+17948818 | Msa0318810:CDS |
TGAGATGGATTACGTTACCA+AGG | 0.649858 | 2_4:+17948159 | Msa0318810:CDS |
ATGTGTGTGAATGTGTTGAG+TGG | 0.664508 | 2_4:-17947727 | None:intergenic |
GCAGCTATATAGGAAACTCA+GGG | 0.664510 | 2_4:+17949731 | Msa0318810:CDS |
ACAGGTTAATGACATAGCAG+AGG | 0.680038 | 2_4:+17948692 | Msa0318810:intron |
CTAATTCTGTAAGAAAACAA+GGG | 0.681202 | 2_4:+17948766 | Msa0318810:CDS |
TATCATAAGAACAAGAAGGG+TGG | 0.683989 | 2_4:+17947967 | Msa0318810:CDS |
AGAAAAGGGATTAAAGCATG+TGG | 0.694132 | 2_4:+17947860 | Msa0318810:CDS |
TGATCATGTCGACAACAACA+CGG | 0.696457 | 2_4:+17947940 | Msa0318810:CDS |
TCATGTCGACAACAACACGG+AGG | 0.825209 | 2_4:+17947943 | Msa0318810:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATGATAATCAAATTAAATA+TGG | - | chr2_4:17948655-17948674 | None:intergenic | 10.0% |
!! | AAAGTTAAAAACATTAATTA+AGG | - | chr2_4:17948998-17949017 | None:intergenic | 10.0% |
!!! | CATTTTTTTTTTTTTTTTTG+AGG | - | chr2_4:17949049-17949068 | None:intergenic | 10.0% |
!! | AAAATAAAAAAAATTGAAAG+TGG | + | chr2_4:17949343-17949362 | Msa0318810:intron | 10.0% |
!! | TATGATAATCAAATTAAATA+TGG | - | chr2_4:17948655-17948674 | None:intergenic | 10.0% |
!! | AAAGTTAAAAACATTAATTA+AGG | - | chr2_4:17948998-17949017 | None:intergenic | 10.0% |
!!! | CATTTTTTTTTTTTTTTTTG+AGG | - | chr2_4:17949049-17949068 | None:intergenic | 10.0% |
!! | AAAATAAAAAAAATTGAAAG+TGG | + | chr2_4:17949343-17949362 | Msa0318810:intron | 10.0% |
!! | AATGTATATATATGAAGATA+AGG | + | chr2_4:17947754-17947773 | Msa0318810:five_prime_UTR | 15.0% |
!! | ATATAATATTTCTTCTATCA+TGG | + | chr2_4:17947811-17947830 | Msa0318810:exon | 15.0% |
!! | TATTATTAATAACATATGTG+TGG | + | chr2_4:17948543-17948562 | Msa0318810:intron | 15.0% |
!!! | TTTTATTTTCAAAAGATTTC+TGG | - | chr2_4:17948799-17948818 | None:intergenic | 15.0% |
!!! | TTTTTTTATTTTTAGTCCTT+GGG | - | chr2_4:17949335-17949354 | None:intergenic | 15.0% |
!!! | TTTTTTTTATTTTTAGTCCT+TGG | - | chr2_4:17949336-17949355 | None:intergenic | 15.0% |
!! | TAAATATCATAATTCATAAC+TGG | - | chr2_4:17949815-17949834 | None:intergenic | 15.0% |
!! | AATGTATATATATGAAGATA+AGG | + | chr2_4:17947754-17947773 | Msa0318810:five_prime_UTR | 15.0% |
!! | ATATAATATTTCTTCTATCA+TGG | + | chr2_4:17947811-17947830 | Msa0318810:exon | 15.0% |
!! | TATTATTAATAACATATGTG+TGG | + | chr2_4:17948543-17948562 | Msa0318810:intron | 15.0% |
!!! | TTTTATTTTCAAAAGATTTC+TGG | - | chr2_4:17948799-17948818 | None:intergenic | 15.0% |
!!! | TTTTTTTATTTTTAGTCCTT+GGG | - | chr2_4:17949335-17949354 | None:intergenic | 15.0% |
!!! | TTTTTTTTATTTTTAGTCCT+TGG | - | chr2_4:17949336-17949355 | None:intergenic | 15.0% |
!! | TAAATATCATAATTCATAAC+TGG | - | chr2_4:17949815-17949834 | None:intergenic | 15.0% |
!! | AATAATAATAACTAGTGTAC+TGG | - | chr2_4:17948192-17948211 | None:intergenic | 20.0% |
!! | TTAAATTATTACTATGTGTC+CGG | - | chr2_4:17948281-17948300 | None:intergenic | 20.0% |
!!! | TATTTATGCAAGAGTATATA+TGG | + | chr2_4:17948440-17948459 | Msa0318810:intron | 20.0% |
!!! | TGATTATCATATGATTTTGA+TGG | + | chr2_4:17948664-17948683 | Msa0318810:intron | 20.0% |
!!! | AATCTTTTGAAAATAAAACG+TGG | + | chr2_4:17948801-17948820 | Msa0318810:CDS | 20.0% |
!! | ATTAAGGATGTTAAAAGTAA+GGG | - | chr2_4:17948982-17949001 | None:intergenic | 20.0% |
!! | AATTAAGGATGTTAAAAGTA+AGG | - | chr2_4:17948983-17949002 | None:intergenic | 20.0% |
!!! | TTTTTTTTTTTTTTGAGGGA+TGG | - | chr2_4:17949044-17949063 | None:intergenic | 20.0% |
!! | TTAAAGATTACTATTCATCA+AGG | - | chr2_4:17949140-17949159 | None:intergenic | 20.0% |
!! | AAAAATTGAAAGTGGAAAAT+CGG | + | chr2_4:17949351-17949370 | Msa0318810:intron | 20.0% |
!!! | GTTGAAGACAATTTTTTATT+AGG | + | chr2_4:17949527-17949546 | Msa0318810:intron | 20.0% |
!!! | AGACAATTTTTTATTAGGTT+TGG | + | chr2_4:17949532-17949551 | Msa0318810:intron | 20.0% |
!! | CAGATATTTAATTCATATCA+TGG | + | chr2_4:17949654-17949673 | Msa0318810:CDS | 20.0% |
!! | TATTTAATTCATATCATGGT+TGG | + | chr2_4:17949658-17949677 | Msa0318810:CDS | 20.0% |
!! | ATTTAATTCATATCATGGTT+GGG | + | chr2_4:17949659-17949678 | Msa0318810:CDS | 20.0% |
!!! | CATCATTTTAAATGTGTTTA+GGG | + | chr2_4:17949785-17949804 | Msa0318810:intron | 20.0% |
!! | AATACAATGAAAGAAAAGAA+AGG | - | chr2_4:17949838-17949857 | None:intergenic | 20.0% |
!!! | AATAAAGAACTGTTTTTGTT+TGG | + | chr2_4:17950015-17950034 | Msa0318810:three_prime_UTR | 20.0% |
!! | AATAATAATAACTAGTGTAC+TGG | - | chr2_4:17948192-17948211 | None:intergenic | 20.0% |
!! | TTAAATTATTACTATGTGTC+CGG | - | chr2_4:17948281-17948300 | None:intergenic | 20.0% |
!!! | TATTTATGCAAGAGTATATA+TGG | + | chr2_4:17948440-17948459 | Msa0318810:intron | 20.0% |
!!! | TGATTATCATATGATTTTGA+TGG | + | chr2_4:17948664-17948683 | Msa0318810:intron | 20.0% |
!!! | AATCTTTTGAAAATAAAACG+TGG | + | chr2_4:17948801-17948820 | Msa0318810:CDS | 20.0% |
!! | ATTAAGGATGTTAAAAGTAA+GGG | - | chr2_4:17948982-17949001 | None:intergenic | 20.0% |
!! | AATTAAGGATGTTAAAAGTA+AGG | - | chr2_4:17948983-17949002 | None:intergenic | 20.0% |
!!! | TTTTTTTTTTTTTTGAGGGA+TGG | - | chr2_4:17949044-17949063 | None:intergenic | 20.0% |
!! | TTAAAGATTACTATTCATCA+AGG | - | chr2_4:17949140-17949159 | None:intergenic | 20.0% |
!! | AAAAATTGAAAGTGGAAAAT+CGG | + | chr2_4:17949351-17949370 | Msa0318810:intron | 20.0% |
!!! | GTTGAAGACAATTTTTTATT+AGG | + | chr2_4:17949527-17949546 | Msa0318810:intron | 20.0% |
!!! | AGACAATTTTTTATTAGGTT+TGG | + | chr2_4:17949532-17949551 | Msa0318810:intron | 20.0% |
!! | CAGATATTTAATTCATATCA+TGG | + | chr2_4:17949654-17949673 | Msa0318810:CDS | 20.0% |
!! | TATTTAATTCATATCATGGT+TGG | + | chr2_4:17949658-17949677 | Msa0318810:CDS | 20.0% |
!! | ATTTAATTCATATCATGGTT+GGG | + | chr2_4:17949659-17949678 | Msa0318810:CDS | 20.0% |
!!! | CATCATTTTAAATGTGTTTA+GGG | + | chr2_4:17949785-17949804 | Msa0318810:intron | 20.0% |
!! | AATACAATGAAAGAAAAGAA+AGG | - | chr2_4:17949838-17949857 | None:intergenic | 20.0% |
!!! | AATAAAGAACTGTTTTTGTT+TGG | + | chr2_4:17950015-17950034 | Msa0318810:three_prime_UTR | 20.0% |
! | CTTCATATTAAAGATGTATC+TGG | - | chr2_4:17948377-17948396 | None:intergenic | 25.0% |
! | ACATCTTTAATATGAAGTGT+TGG | + | chr2_4:17948380-17948399 | Msa0318810:intron | 25.0% |
!!! | ATGATTTTGATGGTAATAAC+AGG | + | chr2_4:17948674-17948693 | Msa0318810:intron | 25.0% |
! | TTTCAAGACATTACAATCTA+TGG | + | chr2_4:17948725-17948744 | Msa0318810:CDS | 25.0% |
! | ACTAATTCTGTAAGAAAACA+AGG | + | chr2_4:17948765-17948784 | Msa0318810:CDS | 25.0% |
! | CTAATTCTGTAAGAAAACAA+GGG | + | chr2_4:17948766-17948785 | Msa0318810:CDS | 25.0% |
!!! | TTTTCAAAAGATTTCTGGAA+TGG | - | chr2_4:17948794-17948813 | None:intergenic | 25.0% |
!! | GATATATGCTTTTCATATCT+TGG | + | chr2_4:17948927-17948946 | Msa0318810:intron | 25.0% |
! | AATCTTTAAGCATCTATCTT+TGG | + | chr2_4:17949151-17949170 | Msa0318810:intron | 25.0% |
! | ACACCTTCAATAAAAAATGT+CGG | + | chr2_4:17949274-17949293 | Msa0318810:intron | 25.0% |
! | AAGGTTAAAGAATTGTAAGT+GGG | - | chr2_4:17949392-17949411 | None:intergenic | 25.0% |
! | AAAGGTTAAAGAATTGTAAG+TGG | - | chr2_4:17949393-17949412 | None:intergenic | 25.0% |
! | CAAAAAAGACTACATTATTG+AGG | - | chr2_4:17949475-17949494 | None:intergenic | 25.0% |
!! | CCTAAACACATTTAAAATGA+TGG | - | chr2_4:17949787-17949806 | None:intergenic | 25.0% |
!! | CCATCATTTTAAATGTGTTT+AGG | + | chr2_4:17949784-17949803 | Msa0318810:intron | 25.0% |
!! | GAAAGATCTTTTCAATGTAT+CGG | - | chr2_4:17949925-17949944 | None:intergenic | 25.0% |
! | ATCTTTCTTGAAAGAGAATT+GGG | + | chr2_4:17949938-17949957 | Msa0318810:CDS | 25.0% |
! | AAAAAACACATCCATTTAGA+AGG | - | chr2_4:17949978-17949997 | None:intergenic | 25.0% |
! | CTTCATATTAAAGATGTATC+TGG | - | chr2_4:17948377-17948396 | None:intergenic | 25.0% |
! | ACATCTTTAATATGAAGTGT+TGG | + | chr2_4:17948380-17948399 | Msa0318810:intron | 25.0% |
!!! | ATGATTTTGATGGTAATAAC+AGG | + | chr2_4:17948674-17948693 | Msa0318810:intron | 25.0% |
! | TTTCAAGACATTACAATCTA+TGG | + | chr2_4:17948725-17948744 | Msa0318810:CDS | 25.0% |
! | ACTAATTCTGTAAGAAAACA+AGG | + | chr2_4:17948765-17948784 | Msa0318810:CDS | 25.0% |
! | CTAATTCTGTAAGAAAACAA+GGG | + | chr2_4:17948766-17948785 | Msa0318810:CDS | 25.0% |
!!! | TTTTCAAAAGATTTCTGGAA+TGG | - | chr2_4:17948794-17948813 | None:intergenic | 25.0% |
!! | GATATATGCTTTTCATATCT+TGG | + | chr2_4:17948927-17948946 | Msa0318810:intron | 25.0% |
! | AATCTTTAAGCATCTATCTT+TGG | + | chr2_4:17949151-17949170 | Msa0318810:intron | 25.0% |
! | ACACCTTCAATAAAAAATGT+CGG | + | chr2_4:17949274-17949293 | Msa0318810:intron | 25.0% |
! | AAGGTTAAAGAATTGTAAGT+GGG | - | chr2_4:17949392-17949411 | None:intergenic | 25.0% |
! | AAAGGTTAAAGAATTGTAAG+TGG | - | chr2_4:17949393-17949412 | None:intergenic | 25.0% |
! | CAAAAAAGACTACATTATTG+AGG | - | chr2_4:17949475-17949494 | None:intergenic | 25.0% |
!! | CCTAAACACATTTAAAATGA+TGG | - | chr2_4:17949787-17949806 | None:intergenic | 25.0% |
!! | CCATCATTTTAAATGTGTTT+AGG | + | chr2_4:17949784-17949803 | Msa0318810:intron | 25.0% |
!! | GAAAGATCTTTTCAATGTAT+CGG | - | chr2_4:17949925-17949944 | None:intergenic | 25.0% |
! | ATCTTTCTTGAAAGAGAATT+GGG | + | chr2_4:17949938-17949957 | Msa0318810:CDS | 25.0% |
! | AAAAAACACATCCATTTAGA+AGG | - | chr2_4:17949978-17949997 | None:intergenic | 25.0% |
AACATGTACATCAGAGAAAA+GGG | + | chr2_4:17947846-17947865 | Msa0318810:CDS | 30.0% | |
AGGATATCATAAGAACAAGA+AGG | + | chr2_4:17947963-17947982 | Msa0318810:CDS | 30.0% | |
GGATATCATAAGAACAAGAA+GGG | + | chr2_4:17947964-17947983 | Msa0318810:CDS | 30.0% | |
ACATACTTGGATTCTATGTA+AGG | + | chr2_4:17948411-17948430 | Msa0318810:intron | 30.0% | |
!! | TTTTTATTGAAGGTGTGTCT+CGG | - | chr2_4:17949270-17949289 | None:intergenic | 30.0% |
TTTAACCTTTAGTGCAAAGA+GGG | + | chr2_4:17949403-17949422 | Msa0318810:intron | 30.0% | |
CAAAAGTCAATATTAGTCCA+AGG | - | chr2_4:17949446-17949465 | None:intergenic | 30.0% | |
! | TTATGTTCCAATGTGTGTTT+TGG | + | chr2_4:17949588-17949607 | Msa0318810:intron | 30.0% |
CTGATATGTAAGTTTCCATT+AGG | - | chr2_4:17949886-17949905 | None:intergenic | 30.0% | |
GATCTTTCTTGAAAGAGAAT+TGG | + | chr2_4:17949937-17949956 | Msa0318810:CDS | 30.0% | |
AAAGAGAATTGGGTATAGAT+TGG | + | chr2_4:17949948-17949967 | Msa0318810:CDS | 30.0% | |
CAGAGAGTAATCAATTTCTT+TGG | + | chr2_4:17950049-17950068 | Msa0318810:three_prime_UTR | 30.0% | |
AACATGTACATCAGAGAAAA+GGG | + | chr2_4:17947846-17947865 | Msa0318810:CDS | 30.0% | |
AGGATATCATAAGAACAAGA+AGG | + | chr2_4:17947963-17947982 | Msa0318810:CDS | 30.0% | |
GGATATCATAAGAACAAGAA+GGG | + | chr2_4:17947964-17947983 | Msa0318810:CDS | 30.0% | |
ACATACTTGGATTCTATGTA+AGG | + | chr2_4:17948411-17948430 | Msa0318810:intron | 30.0% | |
!! | TTTTTATTGAAGGTGTGTCT+CGG | - | chr2_4:17949270-17949289 | None:intergenic | 30.0% |
TTTAACCTTTAGTGCAAAGA+GGG | + | chr2_4:17949403-17949422 | Msa0318810:intron | 30.0% | |
CAAAAGTCAATATTAGTCCA+AGG | - | chr2_4:17949446-17949465 | None:intergenic | 30.0% | |
! | TTATGTTCCAATGTGTGTTT+TGG | + | chr2_4:17949588-17949607 | Msa0318810:intron | 30.0% |
CTGATATGTAAGTTTCCATT+AGG | - | chr2_4:17949886-17949905 | None:intergenic | 30.0% | |
GATCTTTCTTGAAAGAGAAT+TGG | + | chr2_4:17949937-17949956 | Msa0318810:CDS | 30.0% | |
AAAGAGAATTGGGTATAGAT+TGG | + | chr2_4:17949948-17949967 | Msa0318810:CDS | 30.0% | |
CAGAGAGTAATCAATTTCTT+TGG | + | chr2_4:17950049-17950068 | Msa0318810:three_prime_UTR | 30.0% | |
AAGATAAGGTGCAAACACTA+AGG | + | chr2_4:17947768-17947787 | Msa0318810:five_prime_UTR | 35.0% | |
CAACATGTACATCAGAGAAA+AGG | + | chr2_4:17947845-17947864 | Msa0318810:CDS | 35.0% | |
AGAAAAGGGATTAAAGCATG+TGG | + | chr2_4:17947860-17947879 | Msa0318810:CDS | 35.0% | |
TATCATAAGAACAAGAAGGG+TGG | + | chr2_4:17947967-17947986 | Msa0318810:CDS | 35.0% | |
CGTCAACGAAAATATGATTG+AGG | + | chr2_4:17948063-17948082 | Msa0318810:CDS | 35.0% | |
AAAGCCAACACTACCAAAAA+GGG | - | chr2_4:17948125-17948144 | None:intergenic | 35.0% | |
TCATTTCCAGTTCATTGAGA+TGG | + | chr2_4:17948144-17948163 | Msa0318810:CDS | 35.0% | |
ACGACACTGACACATATATA+TGG | - | chr2_4:17948328-17948347 | None:intergenic | 35.0% | |
!! | AATATGAAGTGTTGGTGACA+CGG | + | chr2_4:17948388-17948407 | Msa0318810:intron | 35.0% |
AAACACTGACACACATCAAA+TGG | - | chr2_4:17948902-17948921 | None:intergenic | 35.0% | |
!!! | GCACCGACATTTTTTATTGA+AGG | - | chr2_4:17949280-17949299 | None:intergenic | 35.0% |
! | ACTCACCAAGTTTAAAACCT+CGG | - | chr2_4:17949305-17949324 | None:intergenic | 35.0% |
CTTTAACCTTTAGTGCAAAG+AGG | + | chr2_4:17949402-17949421 | Msa0318810:intron | 35.0% | |
TATGAAGGATGCAGTTTCTA+AGG | + | chr2_4:17949623-17949642 | Msa0318810:CDS | 35.0% | |
!! | TATATAGCTGCTGCTTTGTA+GGG | - | chr2_4:17949722-17949741 | None:intergenic | 35.0% |
! | TTTTCAATGTATCGGAGTAG+AGG | - | chr2_4:17949917-17949936 | None:intergenic | 35.0% |
AGATTGGTGAACCTTCTAAA+TGG | + | chr2_4:17949964-17949983 | Msa0318810:exon | 35.0% | |
AAGATAAGGTGCAAACACTA+AGG | + | chr2_4:17947768-17947787 | Msa0318810:five_prime_UTR | 35.0% | |
CAACATGTACATCAGAGAAA+AGG | + | chr2_4:17947845-17947864 | Msa0318810:CDS | 35.0% | |
AGAAAAGGGATTAAAGCATG+TGG | + | chr2_4:17947860-17947879 | Msa0318810:CDS | 35.0% | |
TATCATAAGAACAAGAAGGG+TGG | + | chr2_4:17947967-17947986 | Msa0318810:CDS | 35.0% | |
CGTCAACGAAAATATGATTG+AGG | + | chr2_4:17948063-17948082 | Msa0318810:CDS | 35.0% | |
AAAGCCAACACTACCAAAAA+GGG | - | chr2_4:17948125-17948144 | None:intergenic | 35.0% | |
TCATTTCCAGTTCATTGAGA+TGG | + | chr2_4:17948144-17948163 | Msa0318810:CDS | 35.0% | |
ACGACACTGACACATATATA+TGG | - | chr2_4:17948328-17948347 | None:intergenic | 35.0% | |
!! | AATATGAAGTGTTGGTGACA+CGG | + | chr2_4:17948388-17948407 | Msa0318810:intron | 35.0% |
AAACACTGACACACATCAAA+TGG | - | chr2_4:17948902-17948921 | None:intergenic | 35.0% | |
!!! | GCACCGACATTTTTTATTGA+AGG | - | chr2_4:17949280-17949299 | None:intergenic | 35.0% |
! | ACTCACCAAGTTTAAAACCT+CGG | - | chr2_4:17949305-17949324 | None:intergenic | 35.0% |
CTTTAACCTTTAGTGCAAAG+AGG | + | chr2_4:17949402-17949421 | Msa0318810:intron | 35.0% | |
TATGAAGGATGCAGTTTCTA+AGG | + | chr2_4:17949623-17949642 | Msa0318810:CDS | 35.0% | |
!! | TATATAGCTGCTGCTTTGTA+GGG | - | chr2_4:17949722-17949741 | None:intergenic | 35.0% |
! | TTTTCAATGTATCGGAGTAG+AGG | - | chr2_4:17949917-17949936 | None:intergenic | 35.0% |
AGATTGGTGAACCTTCTAAA+TGG | + | chr2_4:17949964-17949983 | Msa0318810:exon | 35.0% | |
!! | GAGTTCAAGTTCTGAAGGTT+CGG | - | chr2_4:17947700-17947719 | None:intergenic | 40.0% |
! | GCAATGAGTTCAAGTTCTGA+AGG | - | chr2_4:17947705-17947724 | None:intergenic | 40.0% |
ATGTGTGTGAATGTGTTGAG+TGG | - | chr2_4:17947730-17947749 | None:intergenic | 40.0% | |
AAAGGGATTAAAGCATGTGG+TGG | + | chr2_4:17947863-17947882 | Msa0318810:CDS | 40.0% | |
CAGAAAAGAACAGCAGCAAT+CGG | + | chr2_4:17947913-17947932 | Msa0318810:CDS | 40.0% | |
TGATCATGTCGACAACAACA+CGG | + | chr2_4:17947940-17947959 | Msa0318810:CDS | 40.0% | |
AGCTACAAAAGAACATGCAC+GGG | - | chr2_4:17948101-17948120 | None:intergenic | 40.0% | |
GAGCTACAAAAGAACATGCA+CGG | - | chr2_4:17948102-17948121 | None:intergenic | 40.0% | |
! | TCTTTTGTAGCTCCCCTTTT+TGG | + | chr2_4:17948109-17948128 | Msa0318810:CDS | 40.0% |
AAGCCAACACTACCAAAAAG+GGG | - | chr2_4:17948124-17948143 | None:intergenic | 40.0% | |
GAAAGCCAACACTACCAAAA+AGG | - | chr2_4:17948126-17948145 | None:intergenic | 40.0% | |
CGTAATCCATCTCAATGAAC+TGG | - | chr2_4:17948153-17948172 | None:intergenic | 40.0% | |
!! | TGAGATGGATTACGTTACCA+AGG | + | chr2_4:17948159-17948178 | Msa0318810:CDS | 40.0% |
ACTTACTCATACATGTACGC+CGG | + | chr2_4:17948259-17948278 | Msa0318810:intron | 40.0% | |
CTTGGATTCTATGTAAGGAG+AGG | + | chr2_4:17948416-17948435 | Msa0318810:intron | 40.0% | |
TATATGATGAGCTCGCAACA+AGG | - | chr2_4:17948630-17948649 | None:intergenic | 40.0% | |
ACAGGTTAATGACATAGCAG+AGG | + | chr2_4:17948692-17948711 | Msa0318810:intron | 40.0% | |
!! | ACGTGGACTAGAATTTCTCA+AGG | + | chr2_4:17948818-17948837 | Msa0318810:CDS | 40.0% |
AGTCATCAGATGAGTTTCGT+TGG | - | chr2_4:17949078-17949097 | None:intergenic | 40.0% | |
CGACACAAATACTAACACGT+TGG | + | chr2_4:17949177-17949196 | Msa0318810:intron | 40.0% | |
!!! | TGCTACCGAGGTTTTAAACT+TGG | + | chr2_4:17949297-17949316 | Msa0318810:intron | 40.0% |
!!! | TTCCAATGTGTGTTTTGGCA+GGG | + | chr2_4:17949593-17949612 | Msa0318810:intron | 40.0% |
!! | CTATATAGCTGCTGCTTTGT+AGG | - | chr2_4:17949723-17949742 | None:intergenic | 40.0% |
CTACAAAGCAGCAGCTATAT+AGG | + | chr2_4:17949721-17949740 | Msa0318810:CDS | 40.0% | |
AGCAGCTATATAGGAAACTC+AGG | + | chr2_4:17949730-17949749 | Msa0318810:CDS | 40.0% | |
GCAGCTATATAGGAAACTCA+GGG | + | chr2_4:17949731-17949750 | Msa0318810:CDS | 40.0% | |
TATAGGAAACTCAGGGAAGA+TGG | + | chr2_4:17949738-17949757 | Msa0318810:CDS | 40.0% | |
TGCTGTAGAATCTTCAGCAA+AGG | + | chr2_4:17949859-17949878 | Msa0318810:intron | 40.0% | |
ATCTTCAGCAAAGGTCCTAA+TGG | + | chr2_4:17949868-17949887 | Msa0318810:CDS | 40.0% | |
!! | GAGTTCAAGTTCTGAAGGTT+CGG | - | chr2_4:17947700-17947719 | None:intergenic | 40.0% |
! | GCAATGAGTTCAAGTTCTGA+AGG | - | chr2_4:17947705-17947724 | None:intergenic | 40.0% |
ATGTGTGTGAATGTGTTGAG+TGG | - | chr2_4:17947730-17947749 | None:intergenic | 40.0% | |
AAAGGGATTAAAGCATGTGG+TGG | + | chr2_4:17947863-17947882 | Msa0318810:CDS | 40.0% | |
CAGAAAAGAACAGCAGCAAT+CGG | + | chr2_4:17947913-17947932 | Msa0318810:CDS | 40.0% | |
TGATCATGTCGACAACAACA+CGG | + | chr2_4:17947940-17947959 | Msa0318810:CDS | 40.0% | |
AGCTACAAAAGAACATGCAC+GGG | - | chr2_4:17948101-17948120 | None:intergenic | 40.0% | |
GAGCTACAAAAGAACATGCA+CGG | - | chr2_4:17948102-17948121 | None:intergenic | 40.0% | |
! | TCTTTTGTAGCTCCCCTTTT+TGG | + | chr2_4:17948109-17948128 | Msa0318810:CDS | 40.0% |
AAGCCAACACTACCAAAAAG+GGG | - | chr2_4:17948124-17948143 | None:intergenic | 40.0% | |
GAAAGCCAACACTACCAAAA+AGG | - | chr2_4:17948126-17948145 | None:intergenic | 40.0% | |
CGTAATCCATCTCAATGAAC+TGG | - | chr2_4:17948153-17948172 | None:intergenic | 40.0% | |
!! | TGAGATGGATTACGTTACCA+AGG | + | chr2_4:17948159-17948178 | Msa0318810:CDS | 40.0% |
ACTTACTCATACATGTACGC+CGG | + | chr2_4:17948259-17948278 | Msa0318810:intron | 40.0% | |
CTTGGATTCTATGTAAGGAG+AGG | + | chr2_4:17948416-17948435 | Msa0318810:intron | 40.0% | |
TATATGATGAGCTCGCAACA+AGG | - | chr2_4:17948630-17948649 | None:intergenic | 40.0% | |
ACAGGTTAATGACATAGCAG+AGG | + | chr2_4:17948692-17948711 | Msa0318810:intron | 40.0% | |
!! | ACGTGGACTAGAATTTCTCA+AGG | + | chr2_4:17948818-17948837 | Msa0318810:CDS | 40.0% |
AGTCATCAGATGAGTTTCGT+TGG | - | chr2_4:17949078-17949097 | None:intergenic | 40.0% | |
CGACACAAATACTAACACGT+TGG | + | chr2_4:17949177-17949196 | Msa0318810:intron | 40.0% | |
!!! | TGCTACCGAGGTTTTAAACT+TGG | + | chr2_4:17949297-17949316 | Msa0318810:intron | 40.0% |
!!! | TTCCAATGTGTGTTTTGGCA+GGG | + | chr2_4:17949593-17949612 | Msa0318810:intron | 40.0% |
!! | CTATATAGCTGCTGCTTTGT+AGG | - | chr2_4:17949723-17949742 | None:intergenic | 40.0% |
CTACAAAGCAGCAGCTATAT+AGG | + | chr2_4:17949721-17949740 | Msa0318810:CDS | 40.0% | |
AGCAGCTATATAGGAAACTC+AGG | + | chr2_4:17949730-17949749 | Msa0318810:CDS | 40.0% | |
GCAGCTATATAGGAAACTCA+GGG | + | chr2_4:17949731-17949750 | Msa0318810:CDS | 40.0% | |
TATAGGAAACTCAGGGAAGA+TGG | + | chr2_4:17949738-17949757 | Msa0318810:CDS | 40.0% | |
TGCTGTAGAATCTTCAGCAA+AGG | + | chr2_4:17949859-17949878 | Msa0318810:intron | 40.0% | |
ATCTTCAGCAAAGGTCCTAA+TGG | + | chr2_4:17949868-17949887 | Msa0318810:CDS | 40.0% | |
!! | CTGCTGTTCTTTTCTGGCAT+TGG | - | chr2_4:17947909-17947928 | None:intergenic | 45.0% |
! | CGATTGCTGCTGTTCTTTTC+TGG | - | chr2_4:17947915-17947934 | None:intergenic | 45.0% |
! | AGTGTACTGGTAGCTTACCT+TGG | - | chr2_4:17948179-17948198 | None:intergenic | 45.0% |
TTGACACACTCAGAGAGACT+TGG | + | chr2_4:17948575-17948594 | Msa0318810:intron | 45.0% | |
! | AGGGTGATAGTGACATGCTT+TGG | - | chr2_4:17948963-17948982 | None:intergenic | 45.0% |
TTGAGGGATGGTTCAGTCAT+TGG | - | chr2_4:17949032-17949051 | None:intergenic | 45.0% | |
!! | AAAAAATGTCGGTGCTACCG+AGG | + | chr2_4:17949285-17949304 | Msa0318810:intron | 45.0% |
!!! | GTTCCAATGTGTGTTTTGGC+AGG | + | chr2_4:17949592-17949611 | Msa0318810:intron | 45.0% |
!!! | TCCAATGTGTGTTTTGGCAG+GGG | + | chr2_4:17949594-17949613 | Msa0318810:intron | 45.0% |
TGGCAGGGGAAATTCTATGA+AGG | + | chr2_4:17949608-17949627 | Msa0318810:intron | 45.0% | |
TCAGAAAGGCTGTTGCTGTA+AGG | + | chr2_4:17949685-17949704 | Msa0318810:CDS | 45.0% | |
AATGTATCGGAGTAGAGGTG+GGG | - | chr2_4:17949912-17949931 | None:intergenic | 45.0% | |
CAATGTATCGGAGTAGAGGT+GGG | - | chr2_4:17949913-17949932 | None:intergenic | 45.0% | |
TCAATGTATCGGAGTAGAGG+TGG | - | chr2_4:17949914-17949933 | None:intergenic | 45.0% | |
!! | CTGCTGTTCTTTTCTGGCAT+TGG | - | chr2_4:17947909-17947928 | None:intergenic | 45.0% |
! | CGATTGCTGCTGTTCTTTTC+TGG | - | chr2_4:17947915-17947934 | None:intergenic | 45.0% |
! | AGTGTACTGGTAGCTTACCT+TGG | - | chr2_4:17948179-17948198 | None:intergenic | 45.0% |
TTGACACACTCAGAGAGACT+TGG | + | chr2_4:17948575-17948594 | Msa0318810:intron | 45.0% | |
! | AGGGTGATAGTGACATGCTT+TGG | - | chr2_4:17948963-17948982 | None:intergenic | 45.0% |
TTGAGGGATGGTTCAGTCAT+TGG | - | chr2_4:17949032-17949051 | None:intergenic | 45.0% | |
!! | AAAAAATGTCGGTGCTACCG+AGG | + | chr2_4:17949285-17949304 | Msa0318810:intron | 45.0% |
!!! | GTTCCAATGTGTGTTTTGGC+AGG | + | chr2_4:17949592-17949611 | Msa0318810:intron | 45.0% |
!!! | TCCAATGTGTGTTTTGGCAG+GGG | + | chr2_4:17949594-17949613 | Msa0318810:intron | 45.0% |
TGGCAGGGGAAATTCTATGA+AGG | + | chr2_4:17949608-17949627 | Msa0318810:intron | 45.0% | |
TCAGAAAGGCTGTTGCTGTA+AGG | + | chr2_4:17949685-17949704 | Msa0318810:CDS | 45.0% | |
AATGTATCGGAGTAGAGGTG+GGG | - | chr2_4:17949912-17949931 | None:intergenic | 45.0% | |
CAATGTATCGGAGTAGAGGT+GGG | - | chr2_4:17949913-17949932 | None:intergenic | 45.0% | |
TCAATGTATCGGAGTAGAGG+TGG | - | chr2_4:17949914-17949933 | None:intergenic | 45.0% | |
!!! | ATTTTTTTTTTTTTTTTTGA+GGG | - | chr2_4:17949048-17949067 | None:intergenic | 5.0% |
!!! | TTATTGTTTTAAAATTTTAT+CGG | - | chr2_4:17949205-17949224 | None:intergenic | 5.0% |
!!! | ATTTTTTTTTTTTTTTTTGA+GGG | - | chr2_4:17949048-17949067 | None:intergenic | 5.0% |
!!! | TTATTGTTTTAAAATTTTAT+CGG | - | chr2_4:17949205-17949224 | None:intergenic | 5.0% |
TCATGTCGACAACAACACGG+AGG | + | chr2_4:17947943-17947962 | Msa0318810:CDS | 50.0% | |
!! | CTTTTCATCGACTGCTGTCG+TGG | - | chr2_4:17947996-17948015 | None:intergenic | 50.0% |
!!! | GCTCCCCTTTTTGGTAGTGT+TGG | + | chr2_4:17948118-17948137 | Msa0318810:CDS | 50.0% |
!! | GTTGGTGACACGGACATACT+TGG | + | chr2_4:17948398-17948417 | Msa0318810:intron | 50.0% |
CACACGTGTCAGTATCGTGT+CGG | + | chr2_4:17949241-17949260 | Msa0318810:intron | 50.0% | |
TTGGTGAGTCGCAAAACCCA+AGG | + | chr2_4:17949316-17949335 | Msa0318810:intron | 50.0% | |
!! | CTGCGTGGAAAAAGTGTCCT+TGG | + | chr2_4:17949426-17949445 | Msa0318810:intron | 50.0% |
TCCCCTGCCAAAACACACAT+TGG | - | chr2_4:17949598-17949617 | None:intergenic | 50.0% | |
TCATGGTTGGGCTCTCAGAA+AGG | + | chr2_4:17949671-17949690 | Msa0318810:CDS | 50.0% | |
!! | ATAGCTGCTGCTTTGTAGGG+AGG | - | chr2_4:17949719-17949738 | None:intergenic | 50.0% |
TCATGTCGACAACAACACGG+AGG | + | chr2_4:17947943-17947962 | Msa0318810:CDS | 50.0% | |
!! | CTTTTCATCGACTGCTGTCG+TGG | - | chr2_4:17947996-17948015 | None:intergenic | 50.0% |
!!! | GCTCCCCTTTTTGGTAGTGT+TGG | + | chr2_4:17948118-17948137 | Msa0318810:CDS | 50.0% |
!! | GTTGGTGACACGGACATACT+TGG | + | chr2_4:17948398-17948417 | Msa0318810:intron | 50.0% |
CACACGTGTCAGTATCGTGT+CGG | + | chr2_4:17949241-17949260 | Msa0318810:intron | 50.0% | |
TTGGTGAGTCGCAAAACCCA+AGG | + | chr2_4:17949316-17949335 | Msa0318810:intron | 50.0% | |
!! | CTGCGTGGAAAAAGTGTCCT+TGG | + | chr2_4:17949426-17949445 | Msa0318810:intron | 50.0% |
TCCCCTGCCAAAACACACAT+TGG | - | chr2_4:17949598-17949617 | None:intergenic | 50.0% | |
TCATGGTTGGGCTCTCAGAA+AGG | + | chr2_4:17949671-17949690 | Msa0318810:CDS | 50.0% | |
!! | ATAGCTGCTGCTTTGTAGGG+AGG | - | chr2_4:17949719-17949738 | None:intergenic | 50.0% |
CGCAGCCCTCTTTGCACTAA+AGG | - | chr2_4:17949411-17949430 | None:intergenic | 55.0% | |
TTAGTGCAAAGAGGGCTGCG+TGG | + | chr2_4:17949411-17949430 | Msa0318810:intron | 55.0% | |
CGCAGCCCTCTTTGCACTAA+AGG | - | chr2_4:17949411-17949430 | None:intergenic | 55.0% | |
TTAGTGCAAAGAGGGCTGCG+TGG | + | chr2_4:17949411-17949430 | Msa0318810:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 17947676 | 17950117 | 17947676 | ID=Msa0318810;Name=Msa0318810 |
chr2_4 | mRNA | 17947676 | 17950117 | 17947676 | ID=Msa0318810-mRNA-1;Parent=Msa0318810;Name=Msa0318810-mRNA-1;_AED=0.03;_eAED=0.03;_QI=154|1|1|1|1|1|4|144|258 |
chr2_4 | exon | 17947676 | 17948180 | 17947676 | ID=Msa0318810-mRNA-1:exon:6633;Parent=Msa0318810-mRNA-1 |
chr2_4 | exon | 17948696 | 17948868 | 17948696 | ID=Msa0318810-mRNA-1:exon:6634;Parent=Msa0318810-mRNA-1 |
chr2_4 | exon | 17949614 | 17949759 | 17949614 | ID=Msa0318810-mRNA-1:exon:6635;Parent=Msa0318810-mRNA-1 |
chr2_4 | exon | 17949867 | 17950117 | 17949867 | ID=Msa0318810-mRNA-1:exon:6636;Parent=Msa0318810-mRNA-1 |
chr2_4 | five_prime_UTR | 17947676 | 17947829 | 17947676 | ID=Msa0318810-mRNA-1:five_prime_utr;Parent=Msa0318810-mRNA-1 |
chr2_4 | CDS | 17947830 | 17948180 | 17947830 | ID=Msa0318810-mRNA-1:cds;Parent=Msa0318810-mRNA-1 |
chr2_4 | CDS | 17948696 | 17948868 | 17948696 | ID=Msa0318810-mRNA-1:cds;Parent=Msa0318810-mRNA-1 |
chr2_4 | CDS | 17949614 | 17949759 | 17949614 | ID=Msa0318810-mRNA-1:cds;Parent=Msa0318810-mRNA-1 |
chr2_4 | CDS | 17949867 | 17949973 | 17949867 | ID=Msa0318810-mRNA-1:cds;Parent=Msa0318810-mRNA-1 |
chr2_4 | three_prime_UTR | 17949974 | 17950117 | 17949974 | ID=Msa0318810-mRNA-1:three_prime_utr;Parent=Msa0318810-mRNA-1 |
Gene Sequence |
Protein sequence |