AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0215590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215590 MtrunA17_Chr2g0317021 98.587 283 4 0 1 283 51 333 0.0 571
Msa0215590 MtrunA17_Chr8g0360351 79.505 283 57 1 1 283 1 282 3.47e-164 456
Msa0215590 MtrunA17_Chr4g0050381 62.547 267 99 1 17 283 12 277 1.20e-117 338
Msa0215590 MtrunA17_Chr2g0279151 61.423 267 102 1 17 283 16 281 7.96e-114 329
Msa0215590 MtrunA17_Chr3g0115851 60.902 266 103 1 19 283 17 282 2.71e-113 328
Msa0215590 MtrunA17_Chr5g0426141 61.132 265 102 1 19 283 19 282 1.27e-111 323
Msa0215590 MtrunA17_Chr4g0051661 56.115 278 114 2 3 280 126 395 4.37e-108 318
Msa0215590 MtrunA17_Chr1g0150451 44.528 265 139 6 21 282 64 323 1.37e-65 208
Msa0215590 MtrunA17_Chr1g0212961 42.857 266 139 7 23 282 79 337 1.14e-64 206
Msa0215590 MtrunA17_Chr3g0136711 43.396 265 142 6 21 282 21 280 2.49e-63 201
Msa0215590 MtrunA17_Chr3g0126511 42.424 264 144 6 23 283 83 341 6.72e-56 184
Msa0215590 MtrunA17_Chr3g0105371 41.085 258 136 8 37 283 87 339 1.91e-45 156
Msa0215590 MtrunA17_Chr5g0430481 39.147 258 141 8 36 283 124 375 4.17e-43 151
Msa0215590 MtrunA17_Chr3g0105351 40.154 259 137 9 37 283 63 315 2.44e-42 147
Msa0215590 MtrunA17_Chr1g0187481 34.630 257 140 8 34 282 41 277 1.81e-37 134
Msa0215590 MtrunA17_Chr5g0407161 34.746 236 135 7 58 280 114 343 9.62e-35 129
Msa0215590 MtrunA17_Chr1g0171571 35.606 264 152 8 34 283 386 645 1.18e-33 129
Msa0215590 MtrunA17_Chr4g0065141 32.210 267 150 9 41 283 92 351 2.84e-33 125
Msa0215590 MtrunA17_Chr1g0166481 37.109 256 131 6 34 282 41 273 3.10e-33 122
Msa0215590 MtrunA17_Chr3g0138281 34.241 257 142 9 49 283 95 346 1.23e-32 123
Msa0215590 MtrunA17_Chr4g0070871 35.636 275 129 9 49 283 238 504 6.25e-32 123
Msa0215590 MtrunA17_Chr3g0135961 33.582 268 132 7 58 283 277 540 3.06e-31 122
Msa0215590 MtrunA17_Chr3g0112291 32.890 301 158 9 23 283 80 376 5.27e-31 119
Msa0215590 MtrunA17_Chr3g0144111 35.398 226 107 8 67 280 27 225 1.07e-30 115
Msa0215590 MtrunA17_Chr2g0293811 31.092 238 136 7 67 282 100 331 6.53e-30 115
Msa0215590 MtrunA17_Chr1g0194191 33.054 239 132 9 66 282 117 349 1.82e-29 115
Msa0215590 MtrunA17_Chr5g0396731 32.281 285 152 9 35 283 72 351 3.80e-29 113
Msa0215590 MtrunA17_Chr8g0389921 32.780 241 135 6 67 283 198 435 2.94e-28 112
Msa0215590 MtrunA17_Chr1g0150781 32.143 308 144 10 37 283 241 544 3.02e-28 113
Msa0215590 MtrunA17_Chr6g0483411 31.835 267 144 10 47 280 55 316 7.18e-28 109
Msa0215590 MtrunA17_Chr2g0299981 33.028 327 143 13 29 283 214 536 2.34e-27 110
Msa0215590 MtrunA17_Chr4g0066371 29.496 278 151 10 48 283 67 341 2.16e-26 106
Msa0215590 MtrunA17_Chr5g0435721 33.948 271 150 9 36 282 193 458 2.78e-26 107
Msa0215590 MtrunA17_Chr1g0192421 35.878 262 118 12 67 280 89 348 3.32e-26 105
Msa0215590 MtrunA17_Chr1g0158781 34.866 261 141 8 48 283 124 380 2.80e-25 103
Msa0215590 MtrunA17_Chr7g0263281 30.216 278 129 9 67 282 71 345 3.36e-25 103
Msa0215590 MtrunA17_Chr7g0272061 33.091 275 127 13 64 282 88 361 6.95e-25 102
Msa0215590 MtrunA17_Chr4g0001761 44.776 134 57 4 127 249 160 287 1.80e-24 100
Msa0215590 MtrunA17_Chr3g0127091 28.819 288 144 10 47 282 71 349 2.10e-24 101
Msa0215590 MtrunA17_Chr7g0256771 28.720 289 150 10 9 251 15 293 4.02e-24 99.4
Msa0215590 MtrunA17_Chr1g0211251 27.660 329 145 13 32 282 42 355 5.98e-23 97.1
Msa0215590 MtrunA17_Chr1g0153671 29.707 239 144 9 63 282 61 294 1.88e-22 96.3
Msa0215590 MtrunA17_Chr2g0295401 34.340 265 118 16 67 280 92 351 1.12e-21 93.2
Msa0215590 MtrunA17_Chr7g0221691 38.743 191 92 9 99 267 199 386 1.25e-21 94.0
Msa0215590 MtrunA17_Chr7g0271971 31.518 257 147 11 50 282 46 297 1.69e-21 93.6
Msa0215590 MtrunA17_Chr3g0136811 31.638 177 95 5 127 283 160 330 1.84e-21 92.8
Msa0215590 MtrunA17_Chr4g0004971 39.444 180 85 8 126 282 165 343 2.21e-21 92.4
Msa0215590 MtrunA17_Chr7g0225501 35.417 240 129 12 65 282 84 319 3.35e-21 92.8
Msa0215590 MtrunA17_Chr8g0371321 30.241 291 127 13 60 282 71 353 3.59e-21 92.0
Msa0215590 MtrunA17_Chr7g0256751 29.329 283 125 10 67 280 69 345 4.38e-21 92.4
Msa0215590 MtrunA17_Chr1g0181901 27.985 268 144 9 30 251 35 299 7.44e-21 91.3
Msa0215590 MtrunA17_Chr4g0067711 38.547 179 86 9 125 280 173 350 1.72e-20 90.1
Msa0215590 MtrunA17_Chr3g0089721 29.096 354 155 15 7 282 11 346 1.76e-20 90.1
Msa0215590 MtrunA17_Chr3g0089711 28.814 354 156 15 7 282 11 346 5.47e-20 88.6
Msa0215590 MtrunA17_Chr1g0209451 28.125 256 157 8 50 282 46 297 5.66e-20 89.0
Msa0215590 MtrunA17_Chr3g0133801 28.936 235 143 9 67 282 66 295 7.56e-20 88.6
Msa0215590 MtrunA17_Chr6g0486661 29.344 259 139 11 67 282 124 381 8.34e-20 89.4
Msa0215590 MtrunA17_Chr1g0213351 29.514 288 133 10 60 282 72 354 9.12e-20 88.2
Msa0215590 MtrunA17_Chr7g0249421 35.500 200 104 8 107 282 186 384 1.25e-19 88.6
Msa0215590 MtrunA17_Chr7g0250061 28.571 280 127 12 67 280 76 348 1.97e-19 87.0
Msa0215590 MtrunA17_Chr7g0243571 39.744 156 78 6 127 267 188 342 2.07e-19 87.4
Msa0215590 MtrunA17_Chr2g0286951 27.000 300 170 12 31 283 45 342 2.33e-19 87.4
Msa0215590 MtrunA17_Chr1g0192471 29.961 257 151 11 50 282 46 297 4.74e-19 86.3
Msa0215590 MtrunA17_Chr1g0150071 32.203 177 94 6 127 283 160 330 1.13e-18 84.7
Msa0215590 MtrunA17_Chr8g0342431 37.278 169 83 7 134 280 203 370 8.85e-18 82.4
Msa0215590 MtrunA17_Chr2g0294291 29.268 287 138 12 59 282 66 350 1.50e-17 81.6
Msa0215590 MtrunA17_Chr4g0063111 29.213 267 140 11 49 276 60 316 1.65e-17 82.4
Msa0215590 MtrunA17_Chr1g0207571 27.857 280 129 10 70 282 64 337 1.56e-16 79.0
Msa0215590 MtrunA17_Chr4g0022171 34.637 179 93 7 127 282 193 370 4.19e-16 77.8
Msa0215590 MtrunA17_Chr2g0295991 27.660 329 131 12 56 282 153 476 5.70e-16 77.8
Msa0215590 MtrunA17_Chr2g0324061 36.313 179 90 7 127 282 186 363 2.06e-15 75.9
Msa0215590 MtrunA17_Chr1g0175381 25.000 316 161 11 30 280 46 350 2.97e-15 75.1
Msa0215590 MtrunA17_Chr7g0238501 25.926 297 142 11 60 283 256 547 4.86e-15 75.1
Msa0215590 MtrunA17_Chr1g0151781 30.500 200 99 9 69 244 100 283 6.84e-15 73.9
Msa0215590 MtrunA17_Chr3g0089691 32.301 226 75 10 123 282 47 260 9.68e-14 70.1
Msa0215590 MtrunA17_Chr4g0067301 26.686 341 132 13 56 282 151 487 3.55e-13 69.3
Msa0215590 MtrunA17_Chr4g0068971 34.426 122 65 3 171 282 115 231 3.68e-13 68.2
Msa0215590 MtrunA17_Chr1g0185141 27.315 216 96 9 127 283 226 439 3.96e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0215590 AT3G15260.2 74.048 289 69 2 1 283 1 289 2.37e-156 437
Msa0215590 AT3G15260.1 74.048 289 69 2 1 283 1 289 2.37e-156 437
Msa0215590 AT4G28400.1 68.198 283 90 0 1 283 1 283 1.47e-140 397
Msa0215590 AT2G20630.1 65.018 283 95 1 1 283 1 279 1.04e-134 382
Msa0215590 AT2G20630.2 65.233 279 93 1 1 279 1 275 1.76e-132 377
Msa0215590 AT4G28400.3 69.231 260 80 0 24 283 2 261 8.81e-132 374
Msa0215590 AT4G28400.2 67.782 239 77 0 1 239 1 239 1.16e-118 340
Msa0215590 AT1G22280.1 59.200 250 102 0 34 283 32 281 4.82e-107 312
Msa0215590 AT1G34750.2 56.890 283 112 2 10 283 1 282 1.89e-106 311
Msa0215590 AT1G34750.1 56.890 283 112 2 10 283 1 282 1.89e-106 311
Msa0215590 AT1G34750.3 56.890 283 112 2 10 283 1 282 1.89e-106 311
Msa0215590 AT1G22280.3 57.812 256 102 1 34 283 32 287 1.37e-104 306
Msa0215590 AT2G34740.1 56.522 253 106 3 32 282 84 334 6.30e-97 288
Msa0215590 AT1G78200.1 55.094 265 115 3 22 283 20 283 2.18e-95 283
Msa0215590 AT1G78200.3 55.094 265 115 3 22 283 20 283 2.18e-95 283
Msa0215590 AT1G78200.2 55.094 265 115 3 22 283 20 283 2.18e-95 283
Msa0215590 AT1G34750.4 55.466 247 98 3 10 247 1 244 7.94e-88 262
Msa0215590 AT1G78200.5 56.303 238 101 2 49 283 1 238 9.95e-88 261
Msa0215590 AT1G78200.4 56.303 238 101 2 49 283 1 238 9.95e-88 261
Msa0215590 AT2G34740.3 58.095 210 84 3 36 243 84 291 3.33e-84 255
Msa0215590 AT2G34740.2 58.095 210 84 3 36 243 102 309 3.91e-84 255
Msa0215590 AT5G10740.1 44.151 265 140 6 21 282 20 279 2.60e-65 208
Msa0215590 AT5G10740.2 44.151 265 140 6 21 282 20 279 2.60e-65 208
Msa0215590 AT5G24940.1 43.774 265 141 6 21 282 20 279 1.74e-64 209
Msa0215590 AT1G22280.2 61.688 154 59 0 34 187 32 185 2.00e-64 201
Msa0215590 AT4G31750.2 43.019 265 143 6 21 282 20 279 6.67e-64 203
Msa0215590 AT4G31750.1 43.019 265 143 6 21 282 20 279 9.23e-64 203
Msa0215590 AT4G31750.3 43.019 265 143 6 21 282 20 279 9.23e-64 203
Msa0215590 AT1G43900.1 41.241 274 146 8 20 283 101 369 1.80e-60 196
Msa0215590 AT5G53140.1 40.316 253 144 5 34 283 100 348 1.76e-53 179
Msa0215590 AT5G53140.2 40.316 253 144 5 34 283 100 348 1.76e-53 179
Msa0215590 AT2G30020.1 42.205 263 128 10 37 283 139 393 5.75e-46 159
Msa0215590 AT1G07160.1 38.298 282 149 9 18 282 103 376 1.31e-44 155
Msa0215590 AT2G40180.1 36.364 264 146 8 36 283 129 386 1.07e-40 145
Msa0215590 AT1G67820.2 39.336 211 118 6 60 265 108 313 8.24e-36 132
Msa0215590 AT1G67820.1 39.336 211 118 6 60 265 144 349 2.22e-35 132
Msa0215590 AT2G25620.1 36.735 245 125 10 62 283 120 357 2.49e-35 131
Msa0215590 AT2G25620.2 36.735 245 125 10 62 283 120 357 2.49e-35 131
Msa0215590 AT3G51470.2 33.628 226 132 6 67 280 62 281 2.87e-34 126
Msa0215590 AT3G51470.1 33.480 227 133 6 66 280 105 325 9.48e-34 126
Msa0215590 AT2G33700.1 35.470 234 132 7 60 280 115 342 1.60e-33 126
Msa0215590 AT3G23360.1 31.225 253 140 6 34 282 37 259 6.80e-32 119
Msa0215590 AT1G48040.1 34.310 239 127 8 66 280 115 347 2.37e-31 120
Msa0215590 AT3G16800.4 42.654 211 90 11 96 280 46 251 4.39e-31 117
Msa0215590 AT3G16800.6 42.654 211 90 11 96 280 46 251 4.39e-31 117
Msa0215590 AT3G17250.1 32.231 242 132 8 65 280 156 391 1.69e-30 118
Msa0215590 AT5G57050.2 34.098 305 139 14 36 283 73 372 1.86e-30 118
Msa0215590 AT3G16800.2 37.121 264 116 14 62 280 88 346 2.63e-30 117
Msa0215590 AT3G16800.1 37.121 264 116 14 62 280 88 346 2.63e-30 117
Msa0215590 AT3G16800.3 37.121 264 116 14 62 280 88 346 2.63e-30 117
Msa0215590 AT5G57050.1 34.098 305 139 14 36 283 113 412 2.88e-30 118
Msa0215590 AT4G08260.1 34.286 245 115 10 49 283 1 209 2.89e-30 113
Msa0215590 AT4G26080.1 34.768 302 136 14 36 283 129 423 3.71e-30 118
Msa0215590 AT2G29380.1 34.256 289 144 13 36 283 78 361 3.87e-30 116
Msa0215590 AT3G62260.3 33.333 237 131 8 66 280 26 257 1.22e-29 114
Msa0215590 AT3G62260.1 32.780 241 127 8 66 280 115 346 8.16e-29 113
Msa0215590 AT3G62260.2 32.780 241 127 8 66 280 116 347 8.36e-29 113
Msa0215590 AT1G72770.4 35.448 268 119 7 67 283 238 502 1.39e-28 114
Msa0215590 AT1G72770.1 35.448 268 119 7 67 283 238 502 1.39e-28 114
Msa0215590 AT1G72770.3 35.448 268 119 7 67 283 238 502 1.39e-28 114
Msa0215590 AT3G11410.1 36.134 238 120 9 37 246 106 339 1.30e-27 110
Msa0215590 AT1G07430.1 33.054 239 132 7 36 250 121 355 2.41e-27 110
Msa0215590 AT2G40860.4 31.559 263 163 7 34 283 293 551 2.52e-27 111
Msa0215590 AT2G40860.1 31.559 263 163 7 34 283 391 649 3.56e-27 111
Msa0215590 AT5G51760.2 32.143 308 145 11 36 283 79 382 1.44e-26 107
Msa0215590 AT5G51760.1 32.792 308 143 12 36 283 109 412 2.28e-26 107
Msa0215590 AT5G27930.1 35.496 262 120 12 67 280 92 352 1.54e-25 104
Msa0215590 AT5G27930.2 35.496 262 120 12 67 280 92 352 1.54e-25 104
Msa0215590 AT5G59220.1 33.891 239 127 8 36 250 112 343 1.68e-25 104
Msa0215590 AT1G17550.1 29.808 312 159 9 26 283 197 502 2.96e-25 105
Msa0215590 AT1G17550.2 29.808 312 159 9 26 283 197 502 2.96e-25 105
Msa0215590 AT1G18030.1 31.227 269 147 9 45 280 83 346 7.19e-25 102
Msa0215590 AT1G09160.2 31.128 257 148 10 50 282 46 297 2.58e-24 101
Msa0215590 AT1G09160.1 31.128 257 148 10 50 282 46 297 2.58e-24 101
Msa0215590 AT3G05640.2 36.576 257 112 14 70 280 96 347 3.69e-24 100
Msa0215590 AT3G05640.1 36.576 257 112 14 70 280 96 347 3.69e-24 100
Msa0215590 AT3G05640.3 36.576 257 112 14 70 280 96 347 3.69e-24 100
Msa0215590 AT3G27140.1 32.653 245 99 8 49 283 1 189 1.01e-23 97.1
Msa0215590 AT4G27800.1 29.568 301 150 11 34 282 58 348 4.66e-23 97.8
Msa0215590 AT1G47380.1 29.545 264 153 10 38 282 44 293 6.78e-23 97.8
Msa0215590 AT2G40860.2 30.000 250 158 7 34 270 391 636 7.44e-23 98.6
Msa0215590 AT3G51370.1 30.208 288 131 12 60 282 71 353 1.80e-22 95.9
Msa0215590 AT3G51370.3 30.208 288 131 12 60 282 71 353 1.80e-22 95.9
Msa0215590 AT5G66080.1 31.408 277 121 11 70 282 85 356 2.52e-22 95.9
Msa0215590 AT4G38520.2 28.125 320 151 11 32 280 42 353 3.18e-22 95.5
Msa0215590 AT4G38520.1 28.125 320 151 11 32 280 42 353 3.18e-22 95.5
Msa0215590 AT3G12620.2 31.655 278 119 11 70 282 86 357 3.97e-22 95.1
Msa0215590 AT3G12620.1 31.655 278 119 11 70 282 86 357 3.97e-22 95.1
Msa0215590 AT4G31860.1 35.593 177 88 6 127 283 160 330 4.17e-22 94.7
Msa0215590 AT2G25070.1 32.203 177 94 5 127 283 160 330 6.52e-22 94.4
Msa0215590 AT2G25070.2 32.203 177 94 5 127 283 160 330 6.52e-22 94.4
Msa0215590 AT1G68410.4 28.674 279 167 11 28 282 32 302 1.02e-21 94.4
Msa0215590 AT1G68410.3 28.674 279 167 11 28 282 32 302 1.02e-21 94.4
Msa0215590 AT1G68410.1 28.674 279 167 11 28 282 32 302 1.02e-21 94.4
Msa0215590 AT1G68410.2 28.674 279 167 11 28 282 32 302 1.02e-21 94.4
Msa0215590 AT3G55050.1 29.874 318 150 10 33 282 46 358 1.41e-21 93.6
Msa0215590 AT3G55050.2 29.874 318 150 10 33 282 46 358 1.41e-21 93.6
Msa0215590 AT4G31860.3 40.299 134 63 4 127 249 160 287 4.36e-21 90.9
Msa0215590 AT1G79630.6 37.017 181 90 7 126 283 111 290 5.95e-21 92.0
Msa0215590 AT1G79630.3 37.017 181 90 7 126 283 111 290 5.95e-21 92.0
Msa0215590 AT1G79630.4 37.017 181 90 7 126 283 111 290 5.95e-21 92.0
Msa0215590 AT1G79630.5 37.017 181 90 7 126 283 111 290 5.95e-21 92.0
Msa0215590 AT1G79630.2 37.017 181 90 7 126 283 151 330 6.31e-21 92.4
Msa0215590 AT1G79630.7 37.017 181 90 7 126 283 151 330 6.31e-21 92.4
Msa0215590 AT1G18030.2 33.032 221 115 7 47 239 85 300 9.78e-21 90.1
Msa0215590 AT5G02760.1 30.142 282 122 12 67 282 72 344 9.81e-21 91.3
Msa0215590 AT1G79630.8 37.222 180 89 7 127 283 218 396 1.03e-20 92.0
Msa0215590 AT1G79630.1 37.222 180 89 7 127 283 222 400 1.07e-20 92.0
Msa0215590 AT5G01700.1 31.923 260 101 9 46 282 82 288 1.78e-20 89.7
Msa0215590 AT2G20050.1 29.008 262 142 10 61 282 140 397 2.96e-20 91.3
Msa0215590 AT2G20050.2 29.008 262 142 10 61 282 140 397 3.13e-20 90.9
Msa0215590 AT5G01700.2 31.801 261 102 9 46 283 131 338 5.09e-20 89.4
Msa0215590 AT5G06750.3 30.522 249 114 11 70 268 85 324 1.24e-19 88.2
Msa0215590 AT5G06750.1 30.522 249 114 11 70 268 85 324 1.24e-19 88.2
Msa0215590 AT3G02750.2 35.714 196 108 7 89 267 177 371 3.19e-19 87.4
Msa0215590 AT3G02750.1 35.714 196 108 7 89 267 177 371 3.19e-19 87.4
Msa0215590 AT4G32950.1 32.296 257 127 12 64 282 69 316 3.82e-19 86.3
Msa0215590 AT1G16220.1 34.054 185 88 7 127 283 199 377 4.78e-19 87.0
Msa0215590 AT3G17090.1 27.875 287 141 9 59 282 75 358 9.61e-19 85.5
Msa0215590 AT4G27800.2 30.451 266 127 11 34 251 58 313 2.18e-18 84.0
Msa0215590 AT5G66080.2 32.645 242 99 9 102 282 14 252 2.35e-18 83.2
Msa0215590 AT4G27800.3 30.451 266 127 11 34 251 58 313 2.45e-18 84.0
Msa0215590 AT5G36250.1 33.488 215 118 8 92 282 171 384 2.62e-18 84.7
Msa0215590 AT3G51370.2 30.165 242 105 9 102 282 30 268 5.83e-18 82.4
Msa0215590 AT2G05050.1 40.171 117 62 3 173 283 76 190 5.93e-18 80.5
Msa0215590 AT4G03415.1 43.165 139 62 6 127 249 195 332 5.97e-18 84.0
Msa0215590 AT4G03415.3 43.165 139 62 6 127 249 195 332 5.97e-18 84.0
Msa0215590 AT4G03415.2 43.165 139 62 6 127 249 195 332 5.97e-18 84.0
Msa0215590 AT4G31860.2 40.164 122 56 4 127 237 160 275 1.56e-17 80.9
Msa0215590 AT4G33920.1 29.181 281 125 11 70 282 64 338 1.68e-16 79.0
Msa0215590 AT5G26010.1 31.496 254 136 10 67 283 73 325 2.60e-16 78.2
Msa0215590 AT5G36250.2 31.441 229 118 9 92 282 171 398 4.43e-15 75.5
Msa0215590 AT5G06750.2 34.066 182 73 8 127 268 68 242 8.68e-15 73.6
Msa0215590 AT1G03590.1 39.568 139 67 6 127 249 185 322 1.07e-14 74.3
Msa0215590 AT3G16560.1 30.909 220 93 8 117 282 266 480 2.76e-13 70.1
Msa0215590 AT3G16560.4 30.909 220 93 8 117 282 266 480 2.76e-13 70.1
Msa0215590 AT3G16560.2 30.909 220 93 8 117 282 266 480 2.76e-13 70.1
Msa0215590 AT5G36250.3 34.706 170 93 7 92 244 171 339 5.29e-13 68.6
Msa0215590 AT4G33920.2 29.388 245 106 9 102 282 14 255 7.59e-13 67.8
Msa0215590 AT4G33920.3 31.863 204 80 7 136 282 24 225 1.36e-12 66.6
Msa0215590 AT3G16560.3 32.804 189 89 7 117 272 266 449 1.67e-12 67.8
Msa0215590 AT5G19280.1 25.869 259 159 10 49 280 323 575 2.16e-12 67.4
Msa0215590 AT1G72770.2 34.731 167 76 5 67 203 238 401 4.68e-12 66.2
Msa0215590 AT1G72770.5 34.731 167 76 5 67 203 238 401 4.68e-12 66.2
Msa0215590 AT4G32950.2 33.010 206 98 11 64 238 69 265 7.26e-12 64.7
Msa0215590 AT5G59220.2 31.250 192 101 8 36 203 112 296 1.47e-11 64.3
Msa0215590 AT5G19280.2 25.279 269 158 11 49 280 323 585 2.20e-11 64.3
Msa0215590 AT2G40860.3 27.273 209 136 6 34 230 391 595 6.29e-11 63.2

Find 107 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCCTTTCCCTGAATC+AGG 0.135034 2_1:+60907615 None:intergenic
AAATTCGTATAAAGTTAAAT+TGG 0.168977 2_1:+60905774 None:intergenic
CTGTGTTGGGTACAATAATT+TGG 0.169036 2_1:+60905962 None:intergenic
TTTAACTTTGTGTGTATATT+AGG 0.173385 2_1:-60906135 Msa0215590:three_prime_UTR
CTTATATTGACCAAACTTAA+TGG 0.181558 2_1:+60906060 None:intergenic
ATTTAACTTTATACGAATTT+TGG 0.190549 2_1:-60905771 Msa0215590:three_prime_UTR
TGGTGGACAATAATTATTTA+TGG 0.229879 2_1:+60909259 None:intergenic
CAAATTGATAACCATGAATT+AGG 0.239726 2_1:-60907501 Msa0215590:CDS
GGTTTATCAGACCCTGATTC+AGG 0.253231 2_1:-60907627 Msa0215590:CDS
TATTTATTTATGATGTGATA+TGG 0.265512 2_1:-60905705 Msa0215590:three_prime_UTR
TTCCCATGTAGCCTGACTTC+TGG 0.289949 2_1:-60907225 Msa0215590:intron
TTTAGAGAAGTCAGGTGAAT+TGG 0.311226 2_1:-60907149 Msa0215590:CDS
AAATAAAGCATTTCTTCATT+TGG 0.314965 2_1:+60906190 None:intergenic
ATATCCTCATGTTCTGTGTT+TGG 0.317522 2_1:+60906995 None:intergenic
AATTCGTATAAAGTTAAATT+GGG 0.332773 2_1:+60905775 None:intergenic
ATGAGTGGTTTGGTTTGGTT+TGG 0.339489 2_1:+60909181 None:intergenic
AGATACTTTGCCATTAAGTT+TGG 0.341155 2_1:-60906070 Msa0215590:three_prime_UTR
GCTTCCTTGACAGCATTTAC+AGG 0.350045 2_1:+60907196 None:intergenic
TAAGCTTAATATCCATTAGA+TGG 0.352404 2_1:-60906241 Msa0215590:three_prime_UTR
GGCTTGTTTGCAATATTTGA+TGG 0.354328 2_1:-60907480 Msa0215590:CDS
TTGGCAGTGTCGAGGGCATT+TGG 0.369814 2_1:-60906724 Msa0215590:CDS
AGCCCGAGAATCCCCGATAT+TGG 0.376877 2_1:+60907066 None:intergenic
TCTTCATTTGGTTTGTATGA+AGG 0.379389 2_1:+60906202 None:intergenic
TTGCAAACAAGCCTAATTCA+TGG 0.382436 2_1:+60907490 None:intergenic
GCTTAATAAATTATTACATA+AGG 0.385471 2_1:+60906259 None:intergenic
AAGTTAGTAGTAGCCAATAT+CGG 0.387423 2_1:-60907079 Msa0215590:CDS
CACGGCTTTCACTTGGTAAA+GGG 0.388409 2_1:-60907570 Msa0215590:CDS
ATGATCCACTGACAGTTGTT+TGG 0.398064 2_1:+60907021 None:intergenic
TTGCAGGAGAAAGTTGGATT+TGG 0.399250 2_1:-60907648 Msa0215590:intron
TAGCCAATATCGGGGATTCT+CGG 0.408867 2_1:-60907069 Msa0215590:CDS
TCACTGAAGAAGCAGTTAAC+AGG 0.409429 2_1:-60906382 Msa0215590:CDS
AAATGAGACTGCAAGTAGTT+AGG 0.414154 2_1:+60907438 None:intergenic
AGGGAATGAGTGGTTTGGTT+TGG 0.416812 2_1:+60909176 None:intergenic
TTAGAGAAGTCAGGTGAATT+GGG 0.420684 2_1:-60907148 Msa0215590:CDS
TGTGTGTATATTAGGAACTT+TGG 0.425073 2_1:-60906127 Msa0215590:three_prime_UTR
AGTTAGTAGTAGCCAATATC+GGG 0.425576 2_1:-60907078 Msa0215590:CDS
CTTCTGTGTGTAAGAAACTT+TGG 0.427789 2_1:+60906016 None:intergenic
CCATGAGGGAATGAGTGGTT+TGG 0.427953 2_1:+60909171 None:intergenic
ACAGGTTCTGTCCAGAAGTC+AGG 0.428823 2_1:+60907214 None:intergenic
AGCAAAATAATACCATCTAA+TGG 0.435754 2_1:+60906229 None:intergenic
TGATTGTATCAAAGATATAA+AGG 0.438060 2_1:-60906429 Msa0215590:CDS
GTTTGGTTTGGTTTGGTTTG+AGG 0.442123 2_1:+60909188 None:intergenic
GGGAAGATCATATCATGAAA+TGG 0.442666 2_1:-60907550 Msa0215590:CDS
GTTTGATAATATCTTAAAAG+AGG 0.444827 2_1:-60907415 Msa0215590:intron
AGTCAGGTGAATTGGGAAGA+GGG 0.450651 2_1:-60907141 Msa0215590:CDS
GGGGACGTTCCACGAGTTGA+TGG 0.455936 2_1:-60906751 Msa0215590:CDS
CAAACATGTCTTAAAGTAGT+AGG 0.465157 2_1:-60909396 None:intergenic
CTTCTCTAAAATACTAGAAT+CGG 0.465360 2_1:+60907162 None:intergenic
GATAACTCTGCATCTGTGTT+GGG 0.468246 2_1:+60905949 None:intergenic
AGCCAATATCGGGGATTCTC+GGG 0.474017 2_1:-60907068 Msa0215590:CDS
TCTTTCCTTTCCCTGAATCA+GGG 0.475011 2_1:+60907616 None:intergenic
TTTGAGGAAGAAATTAAGAA+AGG 0.475750 2_1:+60909204 None:intergenic
TCACGGCTTTCACTTGGTAA+AGG 0.477649 2_1:-60907571 Msa0215590:CDS
GTTACCGCGATATTGATTGA+TGG 0.478710 2_1:-60907106 Msa0215590:CDS
AAGTCAGGTGAATTGGGAAG+AGG 0.482949 2_1:-60907142 Msa0215590:CDS
GAAAAGCAGCGACGATATCT+CGG 0.486004 2_1:-60906360 Msa0215590:CDS
GCAATATTTGATGGCCATGC+TGG 0.487035 2_1:-60907471 Msa0215590:CDS
TGTTGGTTGCAGGAGAAAGT+TGG 0.488727 2_1:-60907654 Msa0215590:intron
AATGGCAAAGTATCTGCAAA+TGG 0.491937 2_1:+60906078 None:intergenic
AACACATGAGAAGTTCTTCA+AGG 0.494666 2_1:-60905925 Msa0215590:three_prime_UTR
TCAGACCCTGATTCAGGGAA+AGG 0.503717 2_1:-60907621 Msa0215590:CDS
CAAAGATATAAAGGATGCTC+GGG 0.504451 2_1:-60906420 Msa0215590:CDS
TTTGTTATATTAGCCAGTGA+TGG 0.505428 2_1:-60906628 Msa0215590:CDS
GTTTATCAGACCCTGATTCA+GGG 0.507975 2_1:-60907626 Msa0215590:CDS
CATAACTCACGGCTTTCACT+TGG 0.508216 2_1:-60907577 Msa0215590:CDS
GTCAGGTGAATTGGGAAGAG+GGG 0.512339 2_1:-60907140 Msa0215590:CDS
AGATAACTCTGCATCTGTGT+TGG 0.518715 2_1:+60905948 None:intergenic
CATAAGGTATATGTTACACT+TGG 0.527299 2_1:+60906275 None:intergenic
CAAAGTTTCTTACACACAGA+AGG 0.529329 2_1:-60906015 Msa0215590:three_prime_UTR
TATTAGCCAGTGATGGATTG+TGG 0.530644 2_1:-60906621 Msa0215590:CDS
CGGGCTGTCTTATCAAAGAA+AGG 0.532439 2_1:-60907049 Msa0215590:CDS
TCAAAGATATAAAGGATGCT+CGG 0.536981 2_1:-60906421 Msa0215590:CDS
ATTCGTATAAAGTTAAATTG+GGG 0.541903 2_1:+60905776 None:intergenic
GACCTTCCACAATCCATCAC+TGG 0.559151 2_1:+60906615 None:intergenic
TATATCTTTGATACAATCAA+CGG 0.560301 2_1:+60906433 None:intergenic
ACACATGAGAAGTTCTTCAA+GGG 0.561246 2_1:-60905924 Msa0215590:three_prime_UTR
ATGGACGGTTGGCAGTGTCG+AGG 0.565843 2_1:-60906732 Msa0215590:CDS
TGGACGGTTGGCAGTGTCGA+GGG 0.566300 2_1:-60906731 Msa0215590:CDS
AGATATTCTTCATAAGATGA+AGG 0.569831 2_1:-60909141 Msa0215590:intron
AAAGTTTCTTACACACAGAA+GGG 0.569970 2_1:-60906014 Msa0215590:three_prime_UTR
TAGTAGGTAACGCGTGAAAG+TGG 0.580092 2_1:-60909380 Msa0215590:five_prime_UTR
AGAACCTGTAAATGCTGTCA+AGG 0.580802 2_1:-60907200 Msa0215590:CDS
CCAAACCACTCATTCCCTCA+TGG 0.593389 2_1:-60909171 Msa0215590:exon
TCCACGAGTTGATGGACGGT+TGG 0.595972 2_1:-60906743 Msa0215590:CDS
CTTGAGAGTGATGAAGATGA+TGG 0.599435 2_1:+60909239 None:intergenic
AGATATAAAGGATGCTCGGG+CGG 0.605795 2_1:-60906417 Msa0215590:CDS
AATATCTCTAGCAGCCATGA+GGG 0.606073 2_1:+60909157 None:intergenic
ATCTTCTCTACTGTCACATG+TGG 0.609752 2_1:+60906667 None:intergenic
AGCCAGTGATGGATTGTGGA+AGG 0.612846 2_1:-60906617 Msa0215590:intron
TTCGTATAAAGTTAAATTGG+GGG 0.614699 2_1:+60905777 None:intergenic
TGTGGCCAAACAACTGTCAG+TGG 0.618489 2_1:-60907026 Msa0215590:CDS
AGCAGCCATGAGGGAATGAG+TGG 0.626745 2_1:+60909166 None:intergenic
AAGATCATATCATGAAATGG+AGG 0.634765 2_1:-60907547 Msa0215590:CDS
ACGTTCCACGAGTTGATGGA+CGG 0.635047 2_1:-60906747 Msa0215590:CDS
TGAACCAAACACAGAACATG+AGG 0.635890 2_1:-60906999 Msa0215590:CDS
GCCAACCGTCCATCAACTCG+TGG 0.637325 2_1:+60906742 None:intergenic
TGTTAACTGCTTCTTCAGTG+AGG 0.637515 2_1:+60906384 None:intergenic
GAATATCTCTAGCAGCCATG+AGG 0.640244 2_1:+60909156 None:intergenic
TCAGGTGAATTGGGAAGAGG+GGG 0.645350 2_1:-60907139 Msa0215590:CDS
ATGTCGAAACACATAACTCA+CGG 0.646422 2_1:-60907588 Msa0215590:CDS
CACATGAGAAGTTCTTCAAG+GGG 0.647358 2_1:-60905923 Msa0215590:three_prime_UTR
GTCAATATAAGTGATCTATG+TGG 0.647818 2_1:-60906048 Msa0215590:three_prime_UTR
TAGGTACATTGTGACCAGCA+TGG 0.661746 2_1:+60907457 None:intergenic
TGTCTTATCAAAGAAAGGTG+TGG 0.685096 2_1:-60907044 Msa0215590:CDS
CTGACCATCAATCAATATCG+CGG 0.699551 2_1:+60907102 None:intergenic
GTTAGTAGTAGCCAATATCG+GGG 0.703000 2_1:-60907077 Msa0215590:CDS
GAGAGTGATGAAGATGATGG+TGG 0.715864 2_1:+60909242 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGTATAATGAAATAA+AGG + chr2_1:60905960-60905979 None:intergenic 10.0%
!! AAAAACAATTTAACATAATT+TGG + chr2_1:60906252-60906271 None:intergenic 10.0%
!! ATTAAAAATATATATCCATA+AGG + chr2_1:60908500-60908519 None:intergenic 10.0%
!!! GATATATATTTTTAATACTA+AGG - chr2_1:60908504-60908523 Msa0215590:intron 10.0%
!! TGAATCAAATTAATGAAAAT+TGG + chr2_1:60906040-60906059 None:intergenic 15.0%
!!! AAGCAAAAAAATAAGTTTTT+AGG - chr2_1:60906378-60906397 Msa0215590:CDS 15.0%
!!! AAGTAAAAACCATTTTTTTT+AGG + chr2_1:60906466-60906485 None:intergenic 15.0%
!!! TATAATGATATGATAATGAT+AGG - chr2_1:60907080-60907099 Msa0215590:CDS 15.0%
!!! TATTCTATATATTTTTGTGA+CGG - chr2_1:60907365-60907384 Msa0215590:intron 15.0%
!! GCTTAATAAATTATTACATA+AGG + chr2_1:60908802-60908821 None:intergenic 15.0%
!! AATTCGTATAAAGTTAAATT+GGG + chr2_1:60909286-60909305 None:intergenic 15.0%
!! AAATTCGTATAAAGTTAAAT+TGG + chr2_1:60909287-60909306 None:intergenic 15.0%
!!! ATTTAACTTTATACGAATTT+TGG - chr2_1:60909287-60909306 Msa0215590:five_prime_UTR 15.0%
!! TATTTATTTATGATGTGATA+TGG - chr2_1:60909353-60909372 Msa0215590:five_prime_UTR 15.0%
!! AATGAAATAAAGGATCTATA+TGG + chr2_1:60905950-60905969 None:intergenic 20.0%
!! AAGTATGTATGATCTAATAT+TGG + chr2_1:60906002-60906021 None:intergenic 20.0%
!! AAAACACACAAAAAACTAAA+GGG + chr2_1:60906095-60906114 None:intergenic 20.0%
!! AAAAACACACAAAAAACTAA+AGG + chr2_1:60906096-60906115 None:intergenic 20.0%
!!! TTTTTTGTGTGTTTTTCATT+TGG - chr2_1:60906100-60906119 Msa0215590:three_prime_UTR 20.0%
!! TTCAATGAACCTAAAAAAAA+TGG - chr2_1:60906454-60906473 Msa0215590:CDS 20.0%
!! TTACTTATAAATGTAACCAA+AGG - chr2_1:60906480-60906499 Msa0215590:intron 20.0%
!! TACTTATAAATGTAACCAAA+GGG - chr2_1:60906481-60906500 Msa0215590:intron 20.0%
!!! AACTTATTATTATCCTTTTG+TGG - chr2_1:60906628-60906647 Msa0215590:CDS 20.0%
!! TGCTAAAGTTATTGTTAATT+TGG - chr2_1:60906874-60906893 Msa0215590:intron 20.0%
!! TATAAGAAATACCAATTTGA+TGG - chr2_1:60907169-60907188 Msa0215590:CDS 20.0%
!!! GTTTGATAATATCTTAAAAG+AGG - chr2_1:60907643-60907662 Msa0215590:CDS 20.0%
!!! TTTTTAATACTAAGGAAGTA+AGG - chr2_1:60908512-60908531 Msa0215590:intron 20.0%
!! TATATCTTTGATACAATCAA+CGG + chr2_1:60908628-60908647 None:intergenic 20.0%
!! TGATTGTATCAAAGATATAA+AGG - chr2_1:60908629-60908648 Msa0215590:intron 20.0%
!!! AAATAAAGCATTTCTTCATT+TGG + chr2_1:60908871-60908890 None:intergenic 20.0%
!!! TTTAACTTTGTGTGTATATT+AGG - chr2_1:60908923-60908942 Msa0215590:intron 20.0%
!! GTCAAAAAATATATAATCTC+TGG - chr2_1:60908953-60908972 Msa0215590:intron 20.0%
!!! AAAAATCCAGTTTTTAGAAT+AGG + chr2_1:60909259-60909278 None:intergenic 20.0%
!! ATTCGTATAAAGTTAAATTG+GGG + chr2_1:60909285-60909304 None:intergenic 20.0%
! CCATAAAAAAGAAAGAAACA+CGG - chr2_1:60905737-60905756 Msa0215590:three_prime_UTR 25.0%
!! TGGTGGACAATAATTATTTA+TGG + chr2_1:60905802-60905821 None:intergenic 25.0%
! TTTGAGGAAGAAATTAAGAA+AGG + chr2_1:60905857-60905876 None:intergenic 25.0%
! AGATATTCTTCATAAGATGA+AGG - chr2_1:60905917-60905936 Msa0215590:three_prime_UTR 25.0%
! AAACACACAAAAAACTAAAG+GGG + chr2_1:60906094-60906113 None:intergenic 25.0%
!!! TTTGACTTGTATTTGACTAA+AGG - chr2_1:60906137-60906156 Msa0215590:three_prime_UTR 25.0%
! CATTGAATAACGAATGTATT+TGG + chr2_1:60906441-60906460 None:intergenic 25.0%
! GATAATAATAAGTTCGTGTT+TGG + chr2_1:60906622-60906641 None:intergenic 25.0%
! CAATTTAGCAAAATTCTTGA+TGG + chr2_1:60906785-60906804 None:intergenic 25.0%
!! TTATTGTTAATTTGGTGAAG+AGG - chr2_1:60906882-60906901 Msa0215590:intron 25.0%
!! TATTGTTAATTTGGTGAAGA+GGG - chr2_1:60906883-60906902 Msa0215590:intron 25.0%
! ACAAACAAACTAAAATGTTC+TGG + chr2_1:60906932-60906951 None:intergenic 25.0%
!!! AGAACATTTTAGTTTGTTTG+TGG - chr2_1:60906931-60906950 Msa0215590:intron 25.0%
! TCAATTAATTCTGATATCGT+TGG + chr2_1:60906964-60906983 None:intergenic 25.0%
! AGAAAAACATTCCATCAAAT+TGG + chr2_1:60907183-60907202 None:intergenic 25.0%
! AAACTTTAATTAGCTAATGG+AGG + chr2_1:60907288-60907307 None:intergenic 25.0%
! TGCAAACTTTAATTAGCTAA+TGG + chr2_1:60907291-60907310 None:intergenic 25.0%
! ATATATAGAATACTAAGCGA+GGG + chr2_1:60907357-60907376 None:intergenic 25.0%
! AATATATAGAATACTAAGCG+AGG + chr2_1:60907358-60907377 None:intergenic 25.0%
!! CAAATTGATAACCATGAATT+AGG - chr2_1:60907557-60907576 Msa0215590:CDS 25.0%
!!! TTGTTCAAGTTGATTCTTTT+AGG + chr2_1:60907762-60907781 None:intergenic 25.0%
!!! CTTCTCTAAAATACTAGAAT+CGG + chr2_1:60907899-60907918 None:intergenic 25.0%
! CATGAGGATATAAAAAATAG+AGG - chr2_1:60908075-60908094 Msa0215590:intron 25.0%
! ATTATAAAGTGTATCATACC+TGG + chr2_1:60908120-60908139 None:intergenic 25.0%
! AGGTATGATACACTTTATAA+TGG - chr2_1:60908119-60908138 Msa0215590:intron 25.0%
!!! ATCTTTTTTGTCATCTAATC+AGG - chr2_1:60908286-60908305 Msa0215590:intron 25.0%
!!! TCTTTTTTGTCATCTAATCA+GGG - chr2_1:60908287-60908306 Msa0215590:intron 25.0%
! TATGCATGCATATTTAACTA+GGG - chr2_1:60908552-60908571 Msa0215590:intron 25.0%
! GTTTATTCATATATGATTCC+AGG - chr2_1:60908584-60908603 Msa0215590:intron 25.0%
! TAAGCTTAATATCCATTAGA+TGG - chr2_1:60908817-60908836 Msa0215590:intron 25.0%
! AGCAAAATAATACCATCTAA+TGG + chr2_1:60908832-60908851 None:intergenic 25.0%
! CTTATATTGACCAAACTTAA+TGG + chr2_1:60909001-60909020 None:intergenic 25.0%
! TTCGTATAAAGTTAAATTGG+GGG + chr2_1:60909284-60909303 None:intergenic 25.0%
! AATGACCTAAAAATAAGATG+AGG + chr2_1:60909314-60909333 None:intergenic 25.0%
!!! CCGTGTTTCTTTCTTTTTTA+TGG + chr2_1:60905740-60905759 None:intergenic 30.0%
ATATATTTCCCTACAGATCA+GGG + chr2_1:60906180-60906199 None:intergenic 30.0%
! ATTGTGTGTATCTTTGTTTC+TGG - chr2_1:60906207-60906226 Msa0215590:three_prime_UTR 30.0%
! TTGTGTGTATCTTTGTTTCT+GGG - chr2_1:60906208-60906227 Msa0215590:three_prime_UTR 30.0%
! TTTTTGCTTACAAATGTGAC+CGG + chr2_1:60906367-60906386 None:intergenic 30.0%
CATTGCATAACTAATGTATC+CGG - chr2_1:60906403-60906422 Msa0215590:CDS 30.0%
AATGTATCCGGTCTATATAT+AGG - chr2_1:60906415-60906434 Msa0215590:CDS 30.0%
TATTTGGCCTATATATAGAC+CGG + chr2_1:60906425-60906444 None:intergenic 30.0%
TTAGTACATGTTTGGTATCA+CGG - chr2_1:60906510-60906529 Msa0215590:intron 30.0%
TGATACAAGTTAACAAGAGA+CGG + chr2_1:60906658-60906677 None:intergenic 30.0%
AACTTGTATCATCACCAATT+TGG - chr2_1:60906667-60906686 Msa0215590:CDS 30.0%
TTATACCTCCATATGTTGTT+TGG - chr2_1:60907103-60907122 Msa0215590:CDS 30.0%
TTATGCATCCAAACAACATA+TGG + chr2_1:60907114-60907133 None:intergenic 30.0%
ATGCATAAGATTTCCTATTG+TGG - chr2_1:60907126-60907145 Msa0215590:CDS 30.0%
AAGATCATATCATGAAATGG+AGG - chr2_1:60907511-60907530 Msa0215590:CDS 30.0%
GTTAAGAAGTAACCAGAAAA+GGG + chr2_1:60907675-60907694 None:intergenic 30.0%
AGTTAAGAAGTAACCAGAAA+AGG + chr2_1:60907676-60907695 None:intergenic 30.0%
!! TCTAGTATTTTAGAGAAGTC+AGG - chr2_1:60907901-60907920 Msa0215590:intron 30.0%
AAGTTAGTAGTAGCCAATAT+CGG - chr2_1:60907979-60907998 Msa0215590:intron 30.0%
GAGGATATAAAAAATAGAGG+TGG - chr2_1:60908078-60908097 Msa0215590:intron 30.0%
TGCTTAGTAAAAAGTTCGAT+CGG - chr2_1:60908230-60908249 Msa0215590:intron 30.0%
!!! CTTTTTTGTCATCTAATCAG+GGG - chr2_1:60908288-60908307 Msa0215590:intron 30.0%
! TTTGTTATATTAGCCAGTGA+TGG - chr2_1:60908430-60908449 Msa0215590:intron 30.0%
AGCATAATGCAAATACCTTA+TGG - chr2_1:60908482-60908501 Msa0215590:intron 30.0%
GTTAAATATGCATGCATACA+TGG + chr2_1:60908550-60908569 None:intergenic 30.0%
GTATGCATGCATATTTAACT+AGG - chr2_1:60908551-60908570 Msa0215590:intron 30.0%
TCAAAGATATAAAGGATGCT+CGG - chr2_1:60908637-60908656 Msa0215590:intron 30.0%
CATAAGGTATATGTTACACT+TGG + chr2_1:60908786-60908805 None:intergenic 30.0%
!! TCTTCATTTGGTTTGTATGA+AGG + chr2_1:60908859-60908878 None:intergenic 30.0%
TGTGTGTATATTAGGAACTT+TGG - chr2_1:60908931-60908950 Msa0215590:intron 30.0%
AGATACTTTGCCATTAAGTT+TGG - chr2_1:60908988-60909007 Msa0215590:intron 30.0%
GTCAATATAAGTGATCTATG+TGG - chr2_1:60909010-60909029 Msa0215590:intron 30.0%
AAAGTTTCTTACACACAGAA+GGG - chr2_1:60909044-60909063 Msa0215590:intron 30.0%
!!! TTGGTCCTCATCTTATTTTT+AGG - chr2_1:60909306-60909325 Msa0215590:five_prime_UTR 30.0%
!! GTAGATATGTCTTTTCAAGC+TGG - chr2_1:60905759-60905778 Msa0215590:three_prime_UTR 35.0%
ACAGATCAGGGTTATTTGAA+AGG + chr2_1:60906168-60906187 None:intergenic 35.0%
TTCAAATAACCCTGATCTGT+AGG - chr2_1:60906168-60906187 Msa0215590:three_prime_UTR 35.0%
TCAAATAACCCTGATCTGTA+GGG - chr2_1:60906169-60906188 Msa0215590:three_prime_UTR 35.0%
GATATATTTCCCTACAGATC+AGG + chr2_1:60906181-60906200 None:intergenic 35.0%
GTGTGAATTGTTCAAAGTGA+AGG - chr2_1:60906283-60906302 Msa0215590:three_prime_UTR 35.0%
!! AGCTGTCACTTTCTTTATCA+CGG - chr2_1:60906324-60906343 Msa0215590:exon 35.0%
! ATGTACTAAAGTACTCCCTT+TGG + chr2_1:60906499-60906518 None:intergenic 35.0%
! GGAGTACTTTAGTACATGTT+TGG - chr2_1:60906502-60906521 Msa0215590:intron 35.0%
TAAGTTCGTGTTTGGTATCA+TGG + chr2_1:60906614-60906633 None:intergenic 35.0%
TGTATCATCACCAATTTGGA+TGG - chr2_1:60906671-60906690 Msa0215590:CDS 35.0%
AGTTTAACTATACACACCCT+AGG + chr2_1:60906757-60906776 None:intergenic 35.0%
!!! TTTTAGTTTGTTTGTGGCCA+CGG - chr2_1:60906937-60906956 Msa0215590:intron 35.0%
GTGATTGTCTATGAAGAAAG+AGG + chr2_1:60906996-60907015 None:intergenic 35.0%
CTTTCTTCATAGACAATCAC+TGG - chr2_1:60906996-60907015 Msa0215590:CDS 35.0%
TTGTCGTTACTCTTTCACAA+TGG + chr2_1:60907051-60907070 None:intergenic 35.0%
GACTGGTAACTTCTAATACT+TGG + chr2_1:60907232-60907251 None:intergenic 35.0%
TCATGCAAAGATTGAGAAGA+TGG - chr2_1:60907250-60907269 Msa0215590:intron 35.0%
GTCATTTGACATTAGCATGT+TGG - chr2_1:60907387-60907406 Msa0215590:intron 35.0%
ATGTCGAAACACATAACTCA+CGG - chr2_1:60907470-60907489 Msa0215590:CDS 35.0%
GGGAAGATCATATCATGAAA+TGG - chr2_1:60907508-60907527 Msa0215590:CDS 35.0%
TTGCAAACAAGCCTAATTCA+TGG + chr2_1:60907571-60907590 None:intergenic 35.0%
! GGCTTGTTTGCAATATTTGA+TGG - chr2_1:60907578-60907597 Msa0215590:CDS 35.0%
AAATGAGACTGCAAGTAGTT+AGG + chr2_1:60907623-60907642 None:intergenic 35.0%
TTTAGAGAAGTCAGGTGAAT+TGG - chr2_1:60907909-60907928 Msa0215590:intron 35.0%
TTAGAGAAGTCAGGTGAATT+GGG - chr2_1:60907910-60907929 Msa0215590:intron 35.0%
AGTTAGTAGTAGCCAATATC+GGG - chr2_1:60907980-60907999 Msa0215590:intron 35.0%
TGTCTTATCAAAGAAAGGTG+TGG - chr2_1:60908014-60908033 Msa0215590:intron 35.0%
ATATCCTCATGTTCTGTGTT+TGG + chr2_1:60908066-60908085 None:intergenic 35.0%
!! GGTTTTGTATCAAGATTTCC+AGG - chr2_1:60908099-60908118 Msa0215590:intron 35.0%
TAGACTTTAATCCAGTACTG+AGG - chr2_1:60908259-60908278 Msa0215590:intron 35.0%
AAAAGATGTATCCTCAGTAC+TGG + chr2_1:60908273-60908292 None:intergenic 35.0%
! AAGGAAGTAAGGATTAGTGT+TGG - chr2_1:60908523-60908542 Msa0215590:intron 35.0%
! CTTCTTGATTTGACATTACC+TGG + chr2_1:60908605-60908624 None:intergenic 35.0%
CAAAGATATAAAGGATGCTC+GGG - chr2_1:60908638-60908657 Msa0215590:intron 35.0%
! AATGGCAAAGTATCTGCAAA+TGG + chr2_1:60908983-60909002 None:intergenic 35.0%
CTTCTGTGTGTAAGAAACTT+TGG + chr2_1:60909045-60909064 None:intergenic 35.0%
CAAAGTTTCTTACACACAGA+AGG - chr2_1:60909043-60909062 Msa0215590:intron 35.0%
CTGTGTTGGGTACAATAATT+TGG + chr2_1:60909099-60909118 None:intergenic 35.0%
AACACATGAGAAGTTCTTCA+AGG - chr2_1:60909133-60909152 Msa0215590:intron 35.0%
ACACATGAGAAGTTCTTCAA+GGG - chr2_1:60909134-60909153 Msa0215590:intron 35.0%
! TGGTCTCCTATTCTAAAAAC+TGG - chr2_1:60909250-60909269 Msa0215590:five_prime_UTR 35.0%
CTTGAGAGTGATGAAGATGA+TGG + chr2_1:60905822-60905841 None:intergenic 40.0%
!! GTTTGGTTTGGTTTGGTTTG+AGG + chr2_1:60905873-60905892 None:intergenic 40.0%
!! ATGAGTGGTTTGGTTTGGTT+TGG + chr2_1:60905880-60905899 None:intergenic 40.0%
AATATCTCTAGCAGCCATGA+GGG + chr2_1:60905904-60905923 None:intergenic 40.0%
!! TGTATCTTTGTTTCTGGGTC+AGG - chr2_1:60906213-60906232 Msa0215590:three_prime_UTR 40.0%
GTGATAAAGAAAGTGACAGC+TGG + chr2_1:60906325-60906344 None:intergenic 40.0%
CGGTGAGTTTATCGAAATCA+TGG - chr2_1:60906530-60906549 Msa0215590:intron 40.0%
AAGAGACGGTAAACCACAAA+AGG + chr2_1:60906644-60906663 None:intergenic 40.0%
CAGAAGTCTACCATCCAAAT+TGG + chr2_1:60906684-60906703 None:intergenic 40.0%
ATTTGGATGGTAGACTTCTG+TGG - chr2_1:60906684-60906703 Msa0215590:CDS 40.0%
AGCTCATTCTTTCATGACCT+AGG - chr2_1:60906737-60906756 Msa0215590:CDS 40.0%
GCTCATTCTTTCATGACCTA+GGG - chr2_1:60906738-60906757 Msa0215590:CDS 40.0%
CATCTTTCCTAGAAGAGAGT+AGG + chr2_1:60906827-60906846 None:intergenic 40.0%
! CTACTCTCTTCTAGGAAAGA+TGG - chr2_1:60906825-60906844 Msa0215590:intron 40.0%
!! CTTCTAGGAAAGATGGACTA+TGG - chr2_1:60906832-60906851 Msa0215590:intron 40.0%
TGCATCCAAACAACATATGG+AGG + chr2_1:60907111-60907130 None:intergenic 40.0%
AGATTTCCTATTGTGGATGC+TGG - chr2_1:60907133-60907152 Msa0215590:CDS 40.0%
TTGTTTCCAGCATCCACAAT+AGG + chr2_1:60907142-60907161 None:intergenic 40.0%
CTTCTCAATCTTTGCATGAC+TGG + chr2_1:60907249-60907268 None:intergenic 40.0%
TTGCAGGAGAAAGTTGGATT+TGG - chr2_1:60907410-60907429 Msa0215590:intron 40.0%
GTTTATCAGACCCTGATTCA+GGG - chr2_1:60907432-60907451 Msa0215590:CDS 40.0%
TCTTTCCTTTCCCTGAATCA+GGG + chr2_1:60907445-60907464 None:intergenic 40.0%
! AAGAGGTAACTTCCCTTTTC+TGG - chr2_1:60907660-60907679 Msa0215590:intron 40.0%
CATGGGAAAAAATGGATGGT+TGG + chr2_1:60907821-60907840 None:intergenic 40.0%
GCTACATGGGAAAAAATGGA+TGG + chr2_1:60907825-60907844 None:intergenic 40.0%
TCAGGCTACATGGGAAAAAA+TGG + chr2_1:60907829-60907848 None:intergenic 40.0%
AGAACCTGTAAATGCTGTCA+AGG - chr2_1:60907858-60907877 Msa0215590:intron 40.0%
! GTTACCGCGATATTGATTGA+TGG - chr2_1:60907952-60907971 Msa0215590:intron 40.0%
CTGACCATCAATCAATATCG+CGG + chr2_1:60907959-60907978 None:intergenic 40.0%
GTTAGTAGTAGCCAATATCG+GGG - chr2_1:60907981-60908000 Msa0215590:intron 40.0%
ATGATCCACTGACAGTTGTT+TGG + chr2_1:60908040-60908059 None:intergenic 40.0%
TGAACCAAACACAGAACATG+AGG - chr2_1:60908059-60908078 Msa0215590:intron 40.0%
ATCTTCTCTACTGTCACATG+TGG + chr2_1:60908394-60908413 None:intergenic 40.0%
!! TATTAGCCAGTGATGGATTG+TGG - chr2_1:60908437-60908456 Msa0215590:intron 40.0%
TGTTAACTGCTTCTTCAGTG+AGG + chr2_1:60908677-60908696 None:intergenic 40.0%
TCACTGAAGAAGCAGTTAAC+AGG - chr2_1:60908676-60908695 Msa0215590:intron 40.0%
GATAACTCTGCATCTGTGTT+GGG + chr2_1:60909112-60909131 None:intergenic 40.0%
AGATAACTCTGCATCTGTGT+TGG + chr2_1:60909113-60909132 None:intergenic 40.0%
CACATGAGAAGTTCTTCAAG+GGG - chr2_1:60909135-60909154 Msa0215590:intron 40.0%
TAGTAGGTAACGCGTGAAAG+TGG - chr2_1:60905678-60905697 Msa0215590:three_prime_UTR 45.0%
! GAGAGTGATGAAGATGATGG+TGG + chr2_1:60905819-60905838 None:intergenic 45.0%
!! AGGGAATGAGTGGTTTGGTT+TGG + chr2_1:60905885-60905904 None:intergenic 45.0%
GAATATCTCTAGCAGCCATG+AGG + chr2_1:60905905-60905924 None:intergenic 45.0%
! AGTGACAGCTGGTTAGTTCT+AGG + chr2_1:60906314-60906333 None:intergenic 45.0%
TGCTTACAAATGTGACCGGA+CGG + chr2_1:60906363-60906382 None:intergenic 45.0%
GTGCTTACCTACTCTCTTCT+AGG - chr2_1:60906817-60906836 Msa0215590:intron 45.0%
ATTCTGATATCGTTGGTCCG+TGG + chr2_1:60906957-60906976 None:intergenic 45.0%
! GACATTAGCATGTTGGTTGC+AGG - chr2_1:60907394-60907413 Msa0215590:intron 45.0%
! TGTTGGTTGCAGGAGAAAGT+TGG - chr2_1:60907404-60907423 Msa0215590:intron 45.0%
GGTTTATCAGACCCTGATTC+AGG - chr2_1:60907431-60907450 Msa0215590:CDS 45.0%
CTCTTTCCTTTCCCTGAATC+AGG + chr2_1:60907446-60907465 None:intergenic 45.0%
CATAACTCACGGCTTTCACT+TGG - chr2_1:60907481-60907500 Msa0215590:CDS 45.0%
TCACGGCTTTCACTTGGTAA+AGG - chr2_1:60907487-60907506 Msa0215590:CDS 45.0%
CACGGCTTTCACTTGGTAAA+GGG - chr2_1:60907488-60907507 Msa0215590:CDS 45.0%
! GCAATATTTGATGGCCATGC+TGG - chr2_1:60907587-60907606 Msa0215590:CDS 45.0%
TAGGTACATTGTGACCAGCA+TGG + chr2_1:60907604-60907623 None:intergenic 45.0%
GCTTCCTTGACAGCATTTAC+AGG + chr2_1:60907865-60907884 None:intergenic 45.0%
AAGTCAGGTGAATTGGGAAG+AGG - chr2_1:60907916-60907935 Msa0215590:intron 45.0%
AGTCAGGTGAATTGGGAAGA+GGG - chr2_1:60907917-60907936 Msa0215590:intron 45.0%
TAGCCAATATCGGGGATTCT+CGG - chr2_1:60907989-60908008 Msa0215590:intron 45.0%
CGGGCTGTCTTATCAAAGAA+AGG - chr2_1:60908009-60908028 Msa0215590:intron 45.0%
AGATATAAAGGATGCTCGGG+CGG - chr2_1:60908641-60908660 Msa0215590:intron 45.0%
GAAAAGCAGCGACGATATCT+CGG - chr2_1:60908698-60908717 Msa0215590:intron 45.0%
!!! ACTTTTTATTTTAAAATATA+GGG + chr2_1:60909228-60909247 None:intergenic 5.0%
!!! AACTTTTTATTTTAAAATAT+AGG + chr2_1:60909229-60909248 None:intergenic 5.0%
!!! TATTTTAAAATAAAAAGTTT+TGG - chr2_1:60909230-60909249 Msa0215590:five_prime_UTR 5.0%
CCATGAGGGAATGAGTGGTT+TGG + chr2_1:60905890-60905909 None:intergenic 50.0%
CCAAACCACTCATTCCCTCA+TGG - chr2_1:60905887-60905906 Msa0215590:three_prime_UTR 50.0%
GAAGAGGGTGAGAAAGTTGC+TGG - chr2_1:60906898-60906917 Msa0215590:intron 50.0%
TCAGACCCTGATTCAGGGAA+AGG - chr2_1:60907437-60907456 Msa0215590:CDS 50.0%
TTCCCATGTAGCCTGACTTC+TGG - chr2_1:60907833-60907852 Msa0215590:intron 50.0%
GTCCAGAAGTCAGGCTACAT+GGG + chr2_1:60907838-60907857 None:intergenic 50.0%
TGTCCAGAAGTCAGGCTACA+TGG + chr2_1:60907839-60907858 None:intergenic 50.0%
ACAGGTTCTGTCCAGAAGTC+AGG + chr2_1:60907847-60907866 None:intergenic 50.0%
GTCAGGTGAATTGGGAAGAG+GGG - chr2_1:60907918-60907937 Msa0215590:intron 50.0%
TCAGGTGAATTGGGAAGAGG+GGG - chr2_1:60907919-60907938 Msa0215590:intron 50.0%
AGCCAATATCGGGGATTCTC+GGG - chr2_1:60907990-60908009 Msa0215590:intron 50.0%
TGTGGCCAAACAACTGTCAG+TGG - chr2_1:60908032-60908051 Msa0215590:intron 50.0%
!! ACGTTCCACGAGTTGATGGA+CGG - chr2_1:60908311-60908330 Msa0215590:intron 50.0%
!! AGCCAGTGATGGATTGTGGA+AGG - chr2_1:60908441-60908460 Msa0215590:intron 50.0%
GACCTTCCACAATCCATCAC+TGG + chr2_1:60908446-60908465 None:intergenic 50.0%
AGCAGCCATGAGGGAATGAG+TGG + chr2_1:60905895-60905914 None:intergenic 55.0%
! GGCATGCTGTTTACTCCGTC+CGG - chr2_1:60906345-60906364 Msa0215590:CDS 55.0%
AGCCCGAGAATCCCCGATAT+TGG + chr2_1:60907995-60908014 None:intergenic 55.0%
!! TCCACGAGTTGATGGACGGT+TGG - chr2_1:60908315-60908334 Msa0215590:intron 55.0%
!! TTGGCAGTGTCGAGGGCATT+TGG - chr2_1:60908334-60908353 Msa0215590:intron 55.0%
! GGGGACGTTCCACGAGTTGA+TGG - chr2_1:60908307-60908326 Msa0215590:intron 60.0%
GCCAACCGTCCATCAACTCG+TGG + chr2_1:60908319-60908338 None:intergenic 60.0%
ATGGACGGTTGGCAGTGTCG+AGG - chr2_1:60908326-60908345 Msa0215590:intron 60.0%
! TGGACGGTTGGCAGTGTCGA+GGG - chr2_1:60908327-60908346 Msa0215590:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 60905673 60909407 60905673 ID=Msa0215590;Name=Msa0215590
chr2_1 mRNA 60905673 60909407 60905673 ID=Msa0215590-mRNA-1;Parent=Msa0215590;Name=Msa0215590-mRNA-1;_AED=0.07;_eAED=0.07;_QI=233|1|1|1|1|1|5|664|283
chr2_1 exon 60905673 60906474 60905673 ID=Msa0215590-mRNA-1:exon:16815;Parent=Msa0215590-mRNA-1
chr2_1 exon 60906618 60906772 60906618 ID=Msa0215590-mRNA-1:exon:16814;Parent=Msa0215590-mRNA-1
chr2_1 exon 60906960 60907236 60906960 ID=Msa0215590-mRNA-1:exon:16813;Parent=Msa0215590-mRNA-1
chr2_1 exon 60907416 60907664 60907416 ID=Msa0215590-mRNA-1:exon:16812;Parent=Msa0215590-mRNA-1
chr2_1 exon 60909142 60909407 60909142 ID=Msa0215590-mRNA-1:exon:16811;Parent=Msa0215590-mRNA-1
chr2_1 five_prime_UTR 60909175 60909407 60909175 ID=Msa0215590-mRNA-1:five_prime_utr;Parent=Msa0215590-mRNA-1
chr2_1 CDS 60909142 60909174 60909142 ID=Msa0215590-mRNA-1:cds;Parent=Msa0215590-mRNA-1
chr2_1 CDS 60907416 60907664 60907416 ID=Msa0215590-mRNA-1:cds;Parent=Msa0215590-mRNA-1
chr2_1 CDS 60906960 60907236 60906960 ID=Msa0215590-mRNA-1:cds;Parent=Msa0215590-mRNA-1
chr2_1 CDS 60906618 60906772 60906618 ID=Msa0215590-mRNA-1:cds;Parent=Msa0215590-mRNA-1
chr2_1 CDS 60906337 60906474 60906337 ID=Msa0215590-mRNA-1:cds;Parent=Msa0215590-mRNA-1
chr2_1 three_prime_UTR 60905673 60906336 60905673 ID=Msa0215590-mRNA-1:three_prime_utr;Parent=Msa0215590-mRNA-1
Gene Sequence

>Msa0215590

ATGGCTGCTAGAGATATTCTTCATAAGATGAAGGAGAAAGTTGGATTTGGTTTATCAGACCCTGATTCAGGGAAAGGAAAGAGCAAGATGTCGAAACACATAACTCACGGCTTTCACTTGGTAAAGGGAAGATCATATCATGAAATGGAGGATTATCTTGTTGCTAGATTTAAGCAAATTGATAACCATGAATTAGGCTTGTTTGCAATATTTGATGGCCATGCTGGTCACAATGTACCTAACTACTTGCAGTCTCATTTGTTTGATAATATCTTAAAAGAGCCTGACTTCTGGACAGAACCTGTAAATGCTGTCAAGGAAGCGTATAGTATAACCGATTCTAGTATTTTAGAGAAGTCAGGTGAATTGGGAAGAGGGGGTTCAACAGCAGTTACCGCGATATTGATTGATGGTCAGAAGTTAGTAGTAGCCAATATCGGGGATTCTCGGGCTGTCTTATCAAAGAAAGGTGTGGCCAAACAACTGTCAGTGGATCATGAACCAAACACAGAACATGAGGATATAAAAAATAGAGGTGGTTTTGTATCAAGATTTCCAGGGGACGTTCCACGAGTTGATGGACGGTTGGCAGTGTCGAGGGCATTTGGTGACAAAAGCTTGAAGAAACACTTGAGTTCAGAGCCACATGTGACAGTAGAGAAGATAAGTGAAGATGCAGAGTTTGTTATATTAGCCAGTGATGGATTGTGGAAGGTAATGTCAAATCAAGAAGCCGTTGATTGTATCAAAGATATAAAGGATGCTCGGGCGGCAGCAAAGCGCCTCACTGAAGAAGCAGTTAACAGGAAAAGCAGCGACGATATCTCGGTCATCGTTGTGAAACTTCAGTGA
Protein sequence

>Msa0215590

MAARDILHKMKEKVGFGLSDPDSGKGKSKMSKHITHGFHLVKGRSYHEMEDYLVARFKQIDNHELGLFAIFDGHAGHNVPNYLQSHLFDNILKEPDFWTEPVNAVKEAYSITDSSILEKSGELGRGGSTAVTAILIDGQKLVVANIGDSRAVLSKKGVAKQLSVDHEPNTEHEDIKNRGGFVSRFPGDVPRVDGRLAVSRAFGDKSLKKHLSSEPHVTVEKISEDAEFVILASDGLWKVMSNQEAVDCIKDIKDARAAAKRLTEEAVNRKSSDDISVIVVKLQ*