AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1418280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418280 MtrunA17_Chr2g0317021 98.587 283 4 0 1 283 51 333 0.0 571
Msa1418280 MtrunA17_Chr8g0360351 79.505 283 57 1 1 283 1 282 3.47e-164 456
Msa1418280 MtrunA17_Chr4g0050381 62.547 267 99 1 17 283 12 277 1.20e-117 338
Msa1418280 MtrunA17_Chr2g0279151 61.423 267 102 1 17 283 16 281 7.96e-114 329
Msa1418280 MtrunA17_Chr3g0115851 60.902 266 103 1 19 283 17 282 2.71e-113 328
Msa1418280 MtrunA17_Chr5g0426141 61.132 265 102 1 19 283 19 282 1.27e-111 323
Msa1418280 MtrunA17_Chr4g0051661 56.115 278 114 2 3 280 126 395 4.37e-108 318
Msa1418280 MtrunA17_Chr1g0150451 44.528 265 139 6 21 282 64 323 1.37e-65 208
Msa1418280 MtrunA17_Chr1g0212961 42.857 266 139 7 23 282 79 337 1.14e-64 206
Msa1418280 MtrunA17_Chr3g0136711 43.396 265 142 6 21 282 21 280 2.49e-63 201
Msa1418280 MtrunA17_Chr3g0126511 42.424 264 144 6 23 283 83 341 6.72e-56 184
Msa1418280 MtrunA17_Chr3g0105371 41.085 258 136 8 37 283 87 339 1.91e-45 156
Msa1418280 MtrunA17_Chr5g0430481 39.147 258 141 8 36 283 124 375 4.17e-43 151
Msa1418280 MtrunA17_Chr3g0105351 40.154 259 137 9 37 283 63 315 2.44e-42 147
Msa1418280 MtrunA17_Chr1g0187481 34.630 257 140 8 34 282 41 277 1.81e-37 134
Msa1418280 MtrunA17_Chr5g0407161 34.746 236 135 7 58 280 114 343 9.62e-35 129
Msa1418280 MtrunA17_Chr1g0171571 35.606 264 152 8 34 283 386 645 1.18e-33 129
Msa1418280 MtrunA17_Chr4g0065141 32.210 267 150 9 41 283 92 351 2.84e-33 125
Msa1418280 MtrunA17_Chr1g0166481 37.109 256 131 6 34 282 41 273 3.10e-33 122
Msa1418280 MtrunA17_Chr3g0138281 34.241 257 142 9 49 283 95 346 1.23e-32 123
Msa1418280 MtrunA17_Chr4g0070871 35.636 275 129 9 49 283 238 504 6.25e-32 123
Msa1418280 MtrunA17_Chr3g0135961 33.582 268 132 7 58 283 277 540 3.06e-31 122
Msa1418280 MtrunA17_Chr3g0112291 32.890 301 158 9 23 283 80 376 5.27e-31 119
Msa1418280 MtrunA17_Chr3g0144111 35.398 226 107 8 67 280 27 225 1.07e-30 115
Msa1418280 MtrunA17_Chr2g0293811 31.092 238 136 7 67 282 100 331 6.53e-30 115
Msa1418280 MtrunA17_Chr1g0194191 33.054 239 132 9 66 282 117 349 1.82e-29 115
Msa1418280 MtrunA17_Chr5g0396731 32.281 285 152 9 35 283 72 351 3.80e-29 113
Msa1418280 MtrunA17_Chr8g0389921 32.780 241 135 6 67 283 198 435 2.94e-28 112
Msa1418280 MtrunA17_Chr1g0150781 32.143 308 144 10 37 283 241 544 3.02e-28 113
Msa1418280 MtrunA17_Chr6g0483411 31.835 267 144 10 47 280 55 316 7.18e-28 109
Msa1418280 MtrunA17_Chr2g0299981 33.028 327 143 13 29 283 214 536 2.34e-27 110
Msa1418280 MtrunA17_Chr4g0066371 29.496 278 151 10 48 283 67 341 2.16e-26 106
Msa1418280 MtrunA17_Chr5g0435721 33.948 271 150 9 36 282 193 458 2.78e-26 107
Msa1418280 MtrunA17_Chr1g0192421 35.878 262 118 12 67 280 89 348 3.32e-26 105
Msa1418280 MtrunA17_Chr1g0158781 34.866 261 141 8 48 283 124 380 2.80e-25 103
Msa1418280 MtrunA17_Chr7g0263281 30.216 278 129 9 67 282 71 345 3.36e-25 103
Msa1418280 MtrunA17_Chr7g0272061 33.091 275 127 13 64 282 88 361 6.95e-25 102
Msa1418280 MtrunA17_Chr4g0001761 44.776 134 57 4 127 249 160 287 1.80e-24 100
Msa1418280 MtrunA17_Chr3g0127091 28.819 288 144 10 47 282 71 349 2.10e-24 101
Msa1418280 MtrunA17_Chr7g0256771 28.720 289 150 10 9 251 15 293 4.02e-24 99.4
Msa1418280 MtrunA17_Chr1g0211251 27.660 329 145 13 32 282 42 355 5.98e-23 97.1
Msa1418280 MtrunA17_Chr1g0153671 29.707 239 144 9 63 282 61 294 1.88e-22 96.3
Msa1418280 MtrunA17_Chr2g0295401 34.340 265 118 16 67 280 92 351 1.12e-21 93.2
Msa1418280 MtrunA17_Chr7g0221691 38.743 191 92 9 99 267 199 386 1.25e-21 94.0
Msa1418280 MtrunA17_Chr7g0271971 31.518 257 147 11 50 282 46 297 1.69e-21 93.6
Msa1418280 MtrunA17_Chr3g0136811 31.638 177 95 5 127 283 160 330 1.84e-21 92.8
Msa1418280 MtrunA17_Chr4g0004971 39.444 180 85 8 126 282 165 343 2.21e-21 92.4
Msa1418280 MtrunA17_Chr7g0225501 35.417 240 129 12 65 282 84 319 3.35e-21 92.8
Msa1418280 MtrunA17_Chr8g0371321 30.241 291 127 13 60 282 71 353 3.59e-21 92.0
Msa1418280 MtrunA17_Chr7g0256751 29.329 283 125 10 67 280 69 345 4.38e-21 92.4
Msa1418280 MtrunA17_Chr1g0181901 27.985 268 144 9 30 251 35 299 7.44e-21 91.3
Msa1418280 MtrunA17_Chr4g0067711 38.547 179 86 9 125 280 173 350 1.72e-20 90.1
Msa1418280 MtrunA17_Chr3g0089721 29.096 354 155 15 7 282 11 346 1.76e-20 90.1
Msa1418280 MtrunA17_Chr3g0089711 28.814 354 156 15 7 282 11 346 5.47e-20 88.6
Msa1418280 MtrunA17_Chr1g0209451 28.125 256 157 8 50 282 46 297 5.66e-20 89.0
Msa1418280 MtrunA17_Chr3g0133801 28.936 235 143 9 67 282 66 295 7.56e-20 88.6
Msa1418280 MtrunA17_Chr6g0486661 29.344 259 139 11 67 282 124 381 8.34e-20 89.4
Msa1418280 MtrunA17_Chr1g0213351 29.514 288 133 10 60 282 72 354 9.12e-20 88.2
Msa1418280 MtrunA17_Chr7g0249421 35.500 200 104 8 107 282 186 384 1.25e-19 88.6
Msa1418280 MtrunA17_Chr7g0250061 28.571 280 127 12 67 280 76 348 1.97e-19 87.0
Msa1418280 MtrunA17_Chr7g0243571 39.744 156 78 6 127 267 188 342 2.07e-19 87.4
Msa1418280 MtrunA17_Chr2g0286951 27.000 300 170 12 31 283 45 342 2.33e-19 87.4
Msa1418280 MtrunA17_Chr1g0192471 29.961 257 151 11 50 282 46 297 4.74e-19 86.3
Msa1418280 MtrunA17_Chr1g0150071 32.203 177 94 6 127 283 160 330 1.13e-18 84.7
Msa1418280 MtrunA17_Chr8g0342431 37.278 169 83 7 134 280 203 370 8.85e-18 82.4
Msa1418280 MtrunA17_Chr2g0294291 29.268 287 138 12 59 282 66 350 1.50e-17 81.6
Msa1418280 MtrunA17_Chr4g0063111 29.213 267 140 11 49 276 60 316 1.65e-17 82.4
Msa1418280 MtrunA17_Chr1g0207571 27.857 280 129 10 70 282 64 337 1.56e-16 79.0
Msa1418280 MtrunA17_Chr4g0022171 34.637 179 93 7 127 282 193 370 4.19e-16 77.8
Msa1418280 MtrunA17_Chr2g0295991 27.660 329 131 12 56 282 153 476 5.70e-16 77.8
Msa1418280 MtrunA17_Chr2g0324061 36.313 179 90 7 127 282 186 363 2.06e-15 75.9
Msa1418280 MtrunA17_Chr1g0175381 25.000 316 161 11 30 280 46 350 2.97e-15 75.1
Msa1418280 MtrunA17_Chr7g0238501 25.926 297 142 11 60 283 256 547 4.86e-15 75.1
Msa1418280 MtrunA17_Chr1g0151781 30.500 200 99 9 69 244 100 283 6.84e-15 73.9
Msa1418280 MtrunA17_Chr3g0089691 32.301 226 75 10 123 282 47 260 9.68e-14 70.1
Msa1418280 MtrunA17_Chr4g0067301 26.686 341 132 13 56 282 151 487 3.55e-13 69.3
Msa1418280 MtrunA17_Chr4g0068971 34.426 122 65 3 171 282 115 231 3.68e-13 68.2
Msa1418280 MtrunA17_Chr1g0185141 27.315 216 96 9 127 283 226 439 3.96e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418280 AT3G15260.2 74.048 289 69 2 1 283 1 289 2.37e-156 437
Msa1418280 AT3G15260.1 74.048 289 69 2 1 283 1 289 2.37e-156 437
Msa1418280 AT4G28400.1 68.198 283 90 0 1 283 1 283 1.47e-140 397
Msa1418280 AT2G20630.1 65.018 283 95 1 1 283 1 279 1.04e-134 382
Msa1418280 AT2G20630.2 65.233 279 93 1 1 279 1 275 1.76e-132 377
Msa1418280 AT4G28400.3 69.231 260 80 0 24 283 2 261 8.81e-132 374
Msa1418280 AT4G28400.2 67.782 239 77 0 1 239 1 239 1.16e-118 340
Msa1418280 AT1G22280.1 59.200 250 102 0 34 283 32 281 4.82e-107 312
Msa1418280 AT1G34750.2 56.890 283 112 2 10 283 1 282 1.89e-106 311
Msa1418280 AT1G34750.1 56.890 283 112 2 10 283 1 282 1.89e-106 311
Msa1418280 AT1G34750.3 56.890 283 112 2 10 283 1 282 1.89e-106 311
Msa1418280 AT1G22280.3 57.812 256 102 1 34 283 32 287 1.37e-104 306
Msa1418280 AT2G34740.1 56.522 253 106 3 32 282 84 334 6.30e-97 288
Msa1418280 AT1G78200.1 55.094 265 115 3 22 283 20 283 2.18e-95 283
Msa1418280 AT1G78200.3 55.094 265 115 3 22 283 20 283 2.18e-95 283
Msa1418280 AT1G78200.2 55.094 265 115 3 22 283 20 283 2.18e-95 283
Msa1418280 AT1G34750.4 55.466 247 98 3 10 247 1 244 7.94e-88 262
Msa1418280 AT1G78200.5 56.303 238 101 2 49 283 1 238 9.95e-88 261
Msa1418280 AT1G78200.4 56.303 238 101 2 49 283 1 238 9.95e-88 261
Msa1418280 AT2G34740.3 58.095 210 84 3 36 243 84 291 3.33e-84 255
Msa1418280 AT2G34740.2 58.095 210 84 3 36 243 102 309 3.91e-84 255
Msa1418280 AT5G10740.1 44.151 265 140 6 21 282 20 279 2.60e-65 208
Msa1418280 AT5G10740.2 44.151 265 140 6 21 282 20 279 2.60e-65 208
Msa1418280 AT5G24940.1 43.774 265 141 6 21 282 20 279 1.74e-64 209
Msa1418280 AT1G22280.2 61.688 154 59 0 34 187 32 185 2.00e-64 201
Msa1418280 AT4G31750.2 43.019 265 143 6 21 282 20 279 6.67e-64 203
Msa1418280 AT4G31750.1 43.019 265 143 6 21 282 20 279 9.23e-64 203
Msa1418280 AT4G31750.3 43.019 265 143 6 21 282 20 279 9.23e-64 203
Msa1418280 AT1G43900.1 41.241 274 146 8 20 283 101 369 1.80e-60 196
Msa1418280 AT5G53140.1 40.316 253 144 5 34 283 100 348 1.76e-53 179
Msa1418280 AT5G53140.2 40.316 253 144 5 34 283 100 348 1.76e-53 179
Msa1418280 AT2G30020.1 42.205 263 128 10 37 283 139 393 5.75e-46 159
Msa1418280 AT1G07160.1 38.298 282 149 9 18 282 103 376 1.31e-44 155
Msa1418280 AT2G40180.1 36.364 264 146 8 36 283 129 386 1.07e-40 145
Msa1418280 AT1G67820.2 39.336 211 118 6 60 265 108 313 8.24e-36 132
Msa1418280 AT1G67820.1 39.336 211 118 6 60 265 144 349 2.22e-35 132
Msa1418280 AT2G25620.1 36.735 245 125 10 62 283 120 357 2.49e-35 131
Msa1418280 AT2G25620.2 36.735 245 125 10 62 283 120 357 2.49e-35 131
Msa1418280 AT3G51470.2 33.628 226 132 6 67 280 62 281 2.87e-34 126
Msa1418280 AT3G51470.1 33.480 227 133 6 66 280 105 325 9.48e-34 126
Msa1418280 AT2G33700.1 35.470 234 132 7 60 280 115 342 1.60e-33 126
Msa1418280 AT3G23360.1 31.225 253 140 6 34 282 37 259 6.80e-32 119
Msa1418280 AT1G48040.1 34.310 239 127 8 66 280 115 347 2.37e-31 120
Msa1418280 AT3G16800.4 42.654 211 90 11 96 280 46 251 4.39e-31 117
Msa1418280 AT3G16800.6 42.654 211 90 11 96 280 46 251 4.39e-31 117
Msa1418280 AT3G17250.1 32.231 242 132 8 65 280 156 391 1.69e-30 118
Msa1418280 AT5G57050.2 34.098 305 139 14 36 283 73 372 1.86e-30 118
Msa1418280 AT3G16800.2 37.121 264 116 14 62 280 88 346 2.63e-30 117
Msa1418280 AT3G16800.1 37.121 264 116 14 62 280 88 346 2.63e-30 117
Msa1418280 AT3G16800.3 37.121 264 116 14 62 280 88 346 2.63e-30 117
Msa1418280 AT5G57050.1 34.098 305 139 14 36 283 113 412 2.88e-30 118
Msa1418280 AT4G08260.1 34.286 245 115 10 49 283 1 209 2.89e-30 113
Msa1418280 AT4G26080.1 34.768 302 136 14 36 283 129 423 3.71e-30 118
Msa1418280 AT2G29380.1 34.256 289 144 13 36 283 78 361 3.87e-30 116
Msa1418280 AT3G62260.3 33.333 237 131 8 66 280 26 257 1.22e-29 114
Msa1418280 AT3G62260.1 32.780 241 127 8 66 280 115 346 8.16e-29 113
Msa1418280 AT3G62260.2 32.780 241 127 8 66 280 116 347 8.36e-29 113
Msa1418280 AT1G72770.4 35.448 268 119 7 67 283 238 502 1.39e-28 114
Msa1418280 AT1G72770.1 35.448 268 119 7 67 283 238 502 1.39e-28 114
Msa1418280 AT1G72770.3 35.448 268 119 7 67 283 238 502 1.39e-28 114
Msa1418280 AT3G11410.1 36.134 238 120 9 37 246 106 339 1.30e-27 110
Msa1418280 AT1G07430.1 33.054 239 132 7 36 250 121 355 2.41e-27 110
Msa1418280 AT2G40860.4 31.559 263 163 7 34 283 293 551 2.52e-27 111
Msa1418280 AT2G40860.1 31.559 263 163 7 34 283 391 649 3.56e-27 111
Msa1418280 AT5G51760.2 32.143 308 145 11 36 283 79 382 1.44e-26 107
Msa1418280 AT5G51760.1 32.792 308 143 12 36 283 109 412 2.28e-26 107
Msa1418280 AT5G27930.1 35.496 262 120 12 67 280 92 352 1.54e-25 104
Msa1418280 AT5G27930.2 35.496 262 120 12 67 280 92 352 1.54e-25 104
Msa1418280 AT5G59220.1 33.891 239 127 8 36 250 112 343 1.68e-25 104
Msa1418280 AT1G17550.1 29.808 312 159 9 26 283 197 502 2.96e-25 105
Msa1418280 AT1G17550.2 29.808 312 159 9 26 283 197 502 2.96e-25 105
Msa1418280 AT1G18030.1 31.227 269 147 9 45 280 83 346 7.19e-25 102
Msa1418280 AT1G09160.2 31.128 257 148 10 50 282 46 297 2.58e-24 101
Msa1418280 AT1G09160.1 31.128 257 148 10 50 282 46 297 2.58e-24 101
Msa1418280 AT3G05640.2 36.576 257 112 14 70 280 96 347 3.69e-24 100
Msa1418280 AT3G05640.1 36.576 257 112 14 70 280 96 347 3.69e-24 100
Msa1418280 AT3G05640.3 36.576 257 112 14 70 280 96 347 3.69e-24 100
Msa1418280 AT3G27140.1 32.653 245 99 8 49 283 1 189 1.01e-23 97.1
Msa1418280 AT4G27800.1 29.568 301 150 11 34 282 58 348 4.66e-23 97.8
Msa1418280 AT1G47380.1 29.545 264 153 10 38 282 44 293 6.78e-23 97.8
Msa1418280 AT2G40860.2 30.000 250 158 7 34 270 391 636 7.44e-23 98.6
Msa1418280 AT3G51370.1 30.208 288 131 12 60 282 71 353 1.80e-22 95.9
Msa1418280 AT3G51370.3 30.208 288 131 12 60 282 71 353 1.80e-22 95.9
Msa1418280 AT5G66080.1 31.408 277 121 11 70 282 85 356 2.52e-22 95.9
Msa1418280 AT4G38520.2 28.125 320 151 11 32 280 42 353 3.18e-22 95.5
Msa1418280 AT4G38520.1 28.125 320 151 11 32 280 42 353 3.18e-22 95.5
Msa1418280 AT3G12620.2 31.655 278 119 11 70 282 86 357 3.97e-22 95.1
Msa1418280 AT3G12620.1 31.655 278 119 11 70 282 86 357 3.97e-22 95.1
Msa1418280 AT4G31860.1 35.593 177 88 6 127 283 160 330 4.17e-22 94.7
Msa1418280 AT2G25070.1 32.203 177 94 5 127 283 160 330 6.52e-22 94.4
Msa1418280 AT2G25070.2 32.203 177 94 5 127 283 160 330 6.52e-22 94.4
Msa1418280 AT1G68410.4 28.674 279 167 11 28 282 32 302 1.02e-21 94.4
Msa1418280 AT1G68410.3 28.674 279 167 11 28 282 32 302 1.02e-21 94.4
Msa1418280 AT1G68410.1 28.674 279 167 11 28 282 32 302 1.02e-21 94.4
Msa1418280 AT1G68410.2 28.674 279 167 11 28 282 32 302 1.02e-21 94.4
Msa1418280 AT3G55050.1 29.874 318 150 10 33 282 46 358 1.41e-21 93.6
Msa1418280 AT3G55050.2 29.874 318 150 10 33 282 46 358 1.41e-21 93.6
Msa1418280 AT4G31860.3 40.299 134 63 4 127 249 160 287 4.36e-21 90.9
Msa1418280 AT1G79630.6 37.017 181 90 7 126 283 111 290 5.95e-21 92.0
Msa1418280 AT1G79630.3 37.017 181 90 7 126 283 111 290 5.95e-21 92.0
Msa1418280 AT1G79630.4 37.017 181 90 7 126 283 111 290 5.95e-21 92.0
Msa1418280 AT1G79630.5 37.017 181 90 7 126 283 111 290 5.95e-21 92.0
Msa1418280 AT1G79630.2 37.017 181 90 7 126 283 151 330 6.31e-21 92.4
Msa1418280 AT1G79630.7 37.017 181 90 7 126 283 151 330 6.31e-21 92.4
Msa1418280 AT1G18030.2 33.032 221 115 7 47 239 85 300 9.78e-21 90.1
Msa1418280 AT5G02760.1 30.142 282 122 12 67 282 72 344 9.81e-21 91.3
Msa1418280 AT1G79630.8 37.222 180 89 7 127 283 218 396 1.03e-20 92.0
Msa1418280 AT1G79630.1 37.222 180 89 7 127 283 222 400 1.07e-20 92.0
Msa1418280 AT5G01700.1 31.923 260 101 9 46 282 82 288 1.78e-20 89.7
Msa1418280 AT2G20050.1 29.008 262 142 10 61 282 140 397 2.96e-20 91.3
Msa1418280 AT2G20050.2 29.008 262 142 10 61 282 140 397 3.13e-20 90.9
Msa1418280 AT5G01700.2 31.801 261 102 9 46 283 131 338 5.09e-20 89.4
Msa1418280 AT5G06750.3 30.522 249 114 11 70 268 85 324 1.24e-19 88.2
Msa1418280 AT5G06750.1 30.522 249 114 11 70 268 85 324 1.24e-19 88.2
Msa1418280 AT3G02750.2 35.714 196 108 7 89 267 177 371 3.19e-19 87.4
Msa1418280 AT3G02750.1 35.714 196 108 7 89 267 177 371 3.19e-19 87.4
Msa1418280 AT4G32950.1 32.296 257 127 12 64 282 69 316 3.82e-19 86.3
Msa1418280 AT1G16220.1 34.054 185 88 7 127 283 199 377 4.78e-19 87.0
Msa1418280 AT3G17090.1 27.875 287 141 9 59 282 75 358 9.61e-19 85.5
Msa1418280 AT4G27800.2 30.451 266 127 11 34 251 58 313 2.18e-18 84.0
Msa1418280 AT5G66080.2 32.645 242 99 9 102 282 14 252 2.35e-18 83.2
Msa1418280 AT4G27800.3 30.451 266 127 11 34 251 58 313 2.45e-18 84.0
Msa1418280 AT5G36250.1 33.488 215 118 8 92 282 171 384 2.62e-18 84.7
Msa1418280 AT3G51370.2 30.165 242 105 9 102 282 30 268 5.83e-18 82.4
Msa1418280 AT2G05050.1 40.171 117 62 3 173 283 76 190 5.93e-18 80.5
Msa1418280 AT4G03415.1 43.165 139 62 6 127 249 195 332 5.97e-18 84.0
Msa1418280 AT4G03415.3 43.165 139 62 6 127 249 195 332 5.97e-18 84.0
Msa1418280 AT4G03415.2 43.165 139 62 6 127 249 195 332 5.97e-18 84.0
Msa1418280 AT4G31860.2 40.164 122 56 4 127 237 160 275 1.56e-17 80.9
Msa1418280 AT4G33920.1 29.181 281 125 11 70 282 64 338 1.68e-16 79.0
Msa1418280 AT5G26010.1 31.496 254 136 10 67 283 73 325 2.60e-16 78.2
Msa1418280 AT5G36250.2 31.441 229 118 9 92 282 171 398 4.43e-15 75.5
Msa1418280 AT5G06750.2 34.066 182 73 8 127 268 68 242 8.68e-15 73.6
Msa1418280 AT1G03590.1 39.568 139 67 6 127 249 185 322 1.07e-14 74.3
Msa1418280 AT3G16560.1 30.909 220 93 8 117 282 266 480 2.76e-13 70.1
Msa1418280 AT3G16560.4 30.909 220 93 8 117 282 266 480 2.76e-13 70.1
Msa1418280 AT3G16560.2 30.909 220 93 8 117 282 266 480 2.76e-13 70.1
Msa1418280 AT5G36250.3 34.706 170 93 7 92 244 171 339 5.29e-13 68.6
Msa1418280 AT4G33920.2 29.388 245 106 9 102 282 14 255 7.59e-13 67.8
Msa1418280 AT4G33920.3 31.863 204 80 7 136 282 24 225 1.36e-12 66.6
Msa1418280 AT3G16560.3 32.804 189 89 7 117 272 266 449 1.67e-12 67.8
Msa1418280 AT5G19280.1 25.869 259 159 10 49 280 323 575 2.16e-12 67.4
Msa1418280 AT1G72770.2 34.731 167 76 5 67 203 238 401 4.68e-12 66.2
Msa1418280 AT1G72770.5 34.731 167 76 5 67 203 238 401 4.68e-12 66.2
Msa1418280 AT4G32950.2 33.010 206 98 11 64 238 69 265 7.26e-12 64.7
Msa1418280 AT5G59220.2 31.250 192 101 8 36 203 112 296 1.47e-11 64.3
Msa1418280 AT5G19280.2 25.279 269 158 11 49 280 323 585 2.20e-11 64.3
Msa1418280 AT2G40860.3 27.273 209 136 6 34 230 391 595 6.29e-11 63.2

Find 107 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCCTTTCCCTGAATC+AGG 0.135034 tig0024566:-54161 None:intergenic
AAATTCGTATAAAGTTAAAT+TGG 0.168977 tig0024566:-56002 None:intergenic
CTGTGTTGGGTACAATAATT+TGG 0.169036 tig0024566:-55814 None:intergenic
TTTAACTTTGTGTGTATATT+AGG 0.173385 tig0024566:+55641 Msa1418280:three_prime_UTR
CTTATATTGACCAAACTTAA+TGG 0.181558 tig0024566:-55716 None:intergenic
ATTTAACTTTATACGAATTT+TGG 0.190549 tig0024566:+56005 Msa1418280:three_prime_UTR
TGGTGGACAATAATTATTTA+TGG 0.229879 tig0024566:-52516 None:intergenic
CAAATTGATAACCATGAATT+AGG 0.239726 tig0024566:+54275 Msa1418280:CDS
GGTTTATCAGACCCTGATTC+AGG 0.253231 tig0024566:+54149 Msa1418280:CDS
TATTTATTTATGATGTGATA+TGG 0.265512 tig0024566:+56071 Msa1418280:three_prime_UTR
TTCCCATGTAGCCTGACTTC+TGG 0.289949 tig0024566:+54551 Msa1418280:intron
TTTAGAGAAGTCAGGTGAAT+TGG 0.311226 tig0024566:+54627 Msa1418280:CDS
AAATAAAGCATTTCTTCATT+TGG 0.314965 tig0024566:-55586 None:intergenic
ATATCCTCATGTTCTGTGTT+TGG 0.317522 tig0024566:-54781 None:intergenic
AATTCGTATAAAGTTAAATT+GGG 0.332773 tig0024566:-56001 None:intergenic
ATGAGTGGTTTGGTTTGGTT+TGG 0.339489 tig0024566:-52594 None:intergenic
AGATACTTTGCCATTAAGTT+TGG 0.341155 tig0024566:+55706 Msa1418280:three_prime_UTR
GCTTCCTTGACAGCATTTAC+AGG 0.350045 tig0024566:-54580 None:intergenic
TAAGCTTAATATCCATTAGA+TGG 0.352404 tig0024566:+55535 Msa1418280:three_prime_UTR
GGCTTGTTTGCAATATTTGA+TGG 0.354328 tig0024566:+54296 Msa1418280:CDS
TTGGCAGTGTCGAGGGCATT+TGG 0.369814 tig0024566:+55052 Msa1418280:CDS
AGCCCGAGAATCCCCGATAT+TGG 0.376877 tig0024566:-54710 None:intergenic
TCTTCATTTGGTTTGTATGA+AGG 0.379389 tig0024566:-55574 None:intergenic
TTGCAAACAAGCCTAATTCA+TGG 0.382436 tig0024566:-54286 None:intergenic
GCTTAATAAATTATTACATA+AGG 0.385471 tig0024566:-55517 None:intergenic
AAGTTAGTAGTAGCCAATAT+CGG 0.387423 tig0024566:+54697 Msa1418280:CDS
CACGGCTTTCACTTGGTAAA+GGG 0.388409 tig0024566:+54206 Msa1418280:CDS
ATGATCCACTGACAGTTGTT+TGG 0.398064 tig0024566:-54755 None:intergenic
TTGCAGGAGAAAGTTGGATT+TGG 0.399250 tig0024566:+54128 Msa1418280:intron
TAGCCAATATCGGGGATTCT+CGG 0.408867 tig0024566:+54707 Msa1418280:CDS
TCACTGAAGAAGCAGTTAAC+AGG 0.409429 tig0024566:+55394 Msa1418280:CDS
AAATGAGACTGCAAGTAGTT+AGG 0.414154 tig0024566:-54338 None:intergenic
AGGGAATGAGTGGTTTGGTT+TGG 0.416812 tig0024566:-52599 None:intergenic
TTAGAGAAGTCAGGTGAATT+GGG 0.420684 tig0024566:+54628 Msa1418280:CDS
TGTGTGTATATTAGGAACTT+TGG 0.425073 tig0024566:+55649 Msa1418280:three_prime_UTR
AGTTAGTAGTAGCCAATATC+GGG 0.425576 tig0024566:+54698 Msa1418280:CDS
CTTCTGTGTGTAAGAAACTT+TGG 0.427789 tig0024566:-55760 None:intergenic
CCATGAGGGAATGAGTGGTT+TGG 0.427953 tig0024566:-52604 None:intergenic
ACAGGTTCTGTCCAGAAGTC+AGG 0.428823 tig0024566:-54562 None:intergenic
AGCAAAATAATACCATCTAA+TGG 0.435754 tig0024566:-55547 None:intergenic
TGATTGTATCAAAGATATAA+AGG 0.438060 tig0024566:+55347 Msa1418280:CDS
GTTTGGTTTGGTTTGGTTTG+AGG 0.442123 tig0024566:-52587 None:intergenic
GGGAAGATCATATCATGAAA+TGG 0.442666 tig0024566:+54226 Msa1418280:CDS
GTTTGATAATATCTTAAAAG+AGG 0.444827 tig0024566:+54361 Msa1418280:CDS
AGTCAGGTGAATTGGGAAGA+GGG 0.450651 tig0024566:+54635 Msa1418280:CDS
GGGGACGTTCCACGAGTTGA+TGG 0.455936 tig0024566:+55025 Msa1418280:intron
CAAACATGTCTTAAAGTAGT+AGG 0.465157 tig0024566:+52379 None:intergenic
CTTCTCTAAAATACTAGAAT+CGG 0.465360 tig0024566:-54614 None:intergenic
GATAACTCTGCATCTGTGTT+GGG 0.468246 tig0024566:-55827 None:intergenic
AGCCAATATCGGGGATTCTC+GGG 0.474017 tig0024566:+54708 Msa1418280:CDS
TCTTTCCTTTCCCTGAATCA+GGG 0.475011 tig0024566:-54160 None:intergenic
TTTGAGGAAGAAATTAAGAA+AGG 0.475750 tig0024566:-52571 None:intergenic
TCACGGCTTTCACTTGGTAA+AGG 0.477649 tig0024566:+54205 Msa1418280:CDS
GTTACCGCGATATTGATTGA+TGG 0.478710 tig0024566:+54670 Msa1418280:CDS
AAGTCAGGTGAATTGGGAAG+AGG 0.482949 tig0024566:+54634 Msa1418280:CDS
GAAAAGCAGCGACGATATCT+CGG 0.486004 tig0024566:+55416 Msa1418280:CDS
GCAATATTTGATGGCCATGC+TGG 0.487035 tig0024566:+54305 Msa1418280:CDS
TGTTGGTTGCAGGAGAAAGT+TGG 0.488727 tig0024566:+54122 Msa1418280:intron
AATGGCAAAGTATCTGCAAA+TGG 0.491937 tig0024566:-55698 None:intergenic
AACACATGAGAAGTTCTTCA+AGG 0.494666 tig0024566:+55851 Msa1418280:three_prime_UTR
TCAGACCCTGATTCAGGGAA+AGG 0.503717 tig0024566:+54155 Msa1418280:CDS
CAAAGATATAAAGGATGCTC+GGG 0.504451 tig0024566:+55356 Msa1418280:CDS
TTTGTTATATTAGCCAGTGA+TGG 0.505428 tig0024566:+55148 Msa1418280:CDS
GTTTATCAGACCCTGATTCA+GGG 0.507975 tig0024566:+54150 Msa1418280:CDS
CATAACTCACGGCTTTCACT+TGG 0.508216 tig0024566:+54199 Msa1418280:CDS
GTCAGGTGAATTGGGAAGAG+GGG 0.512339 tig0024566:+54636 Msa1418280:CDS
AGATAACTCTGCATCTGTGT+TGG 0.518715 tig0024566:-55828 None:intergenic
CATAAGGTATATGTTACACT+TGG 0.527299 tig0024566:-55501 None:intergenic
CAAAGTTTCTTACACACAGA+AGG 0.529329 tig0024566:+55761 Msa1418280:three_prime_UTR
TATTAGCCAGTGATGGATTG+TGG 0.530644 tig0024566:+55155 Msa1418280:CDS
CGGGCTGTCTTATCAAAGAA+AGG 0.532439 tig0024566:+54727 Msa1418280:CDS
TCAAAGATATAAAGGATGCT+CGG 0.536981 tig0024566:+55355 Msa1418280:CDS
ATTCGTATAAAGTTAAATTG+GGG 0.541903 tig0024566:-56000 None:intergenic
GACCTTCCACAATCCATCAC+TGG 0.559151 tig0024566:-55161 None:intergenic
TATATCTTTGATACAATCAA+CGG 0.560301 tig0024566:-55343 None:intergenic
ACACATGAGAAGTTCTTCAA+GGG 0.561246 tig0024566:+55852 Msa1418280:three_prime_UTR
ATGGACGGTTGGCAGTGTCG+AGG 0.565843 tig0024566:+55044 Msa1418280:CDS
TGGACGGTTGGCAGTGTCGA+GGG 0.566300 tig0024566:+55045 Msa1418280:CDS
AGATATTCTTCATAAGATGA+AGG 0.569831 tig0024566:+52634 Msa1418280:CDS
AAAGTTTCTTACACACAGAA+GGG 0.569970 tig0024566:+55762 Msa1418280:three_prime_UTR
TAGTAGGTAACGCGTGAAAG+TGG 0.580092 tig0024566:+52395 Msa1418280:five_prime_UTR
AGAACCTGTAAATGCTGTCA+AGG 0.580802 tig0024566:+54576 Msa1418280:CDS
CCAAACCACTCATTCCCTCA+TGG 0.593389 tig0024566:+52604 Msa1418280:exon
TCCACGAGTTGATGGACGGT+TGG 0.595972 tig0024566:+55033 Msa1418280:CDS
CTTGAGAGTGATGAAGATGA+TGG 0.599435 tig0024566:-52536 None:intergenic
AGATATAAAGGATGCTCGGG+CGG 0.605795 tig0024566:+55359 Msa1418280:CDS
AATATCTCTAGCAGCCATGA+GGG 0.606073 tig0024566:-52618 None:intergenic
ATCTTCTCTACTGTCACATG+TGG 0.609752 tig0024566:-55109 None:intergenic
AGCCAGTGATGGATTGTGGA+AGG 0.612846 tig0024566:+55159 Msa1418280:CDS
TTCGTATAAAGTTAAATTGG+GGG 0.614699 tig0024566:-55999 None:intergenic
TGTGGCCAAACAACTGTCAG+TGG 0.618489 tig0024566:+54750 Msa1418280:CDS
AGCAGCCATGAGGGAATGAG+TGG 0.626745 tig0024566:-52609 None:intergenic
AAGATCATATCATGAAATGG+AGG 0.634765 tig0024566:+54229 Msa1418280:CDS
ACGTTCCACGAGTTGATGGA+CGG 0.635047 tig0024566:+55029 Msa1418280:CDS
TGAACCAAACACAGAACATG+AGG 0.635890 tig0024566:+54777 Msa1418280:CDS
GCCAACCGTCCATCAACTCG+TGG 0.637325 tig0024566:-55034 None:intergenic
TGTTAACTGCTTCTTCAGTG+AGG 0.637515 tig0024566:-55392 None:intergenic
GAATATCTCTAGCAGCCATG+AGG 0.640244 tig0024566:-52619 None:intergenic
TCAGGTGAATTGGGAAGAGG+GGG 0.645350 tig0024566:+54637 Msa1418280:CDS
ATGTCGAAACACATAACTCA+CGG 0.646422 tig0024566:+54188 Msa1418280:CDS
CACATGAGAAGTTCTTCAAG+GGG 0.647358 tig0024566:+55853 Msa1418280:three_prime_UTR
GTCAATATAAGTGATCTATG+TGG 0.647818 tig0024566:+55728 Msa1418280:three_prime_UTR
TAGGTACATTGTGACCAGCA+TGG 0.661746 tig0024566:-54319 None:intergenic
TGTCTTATCAAAGAAAGGTG+TGG 0.685096 tig0024566:+54732 Msa1418280:CDS
CTGACCATCAATCAATATCG+CGG 0.699551 tig0024566:-54674 None:intergenic
GTTAGTAGTAGCCAATATCG+GGG 0.703000 tig0024566:+54699 Msa1418280:CDS
GAGAGTGATGAAGATGATGG+TGG 0.715864 tig0024566:-52533 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGTATAATGAAATAA+AGG - tig0024566:52677-52696 None:intergenic 10.0%
!! AAAAACAATTTAACATAATT+TGG - tig0024566:52970-52989 None:intergenic 10.0%
!! ATTAAAAATATATATCCATA+AGG - tig0024566:55218-55237 None:intergenic 10.0%
!!! GATATATATTTTTAATACTA+AGG + tig0024566:55222-55241 Msa1418280:intron 10.0%
!! TGAATCAAATTAATGAAAAT+TGG - tig0024566:52758-52777 None:intergenic 15.0%
!!! AAGCAAAAAAATAAGTTTTT+AGG + tig0024566:53096-53115 Msa1418280:intron 15.0%
!!! AAGTAAAAACCATTTTTTTT+AGG - tig0024566:53184-53203 None:intergenic 15.0%
!!! TATAATGATATGATAATGAT+AGG + tig0024566:53798-53817 Msa1418280:intron 15.0%
!!! TATTCTATATATTTTTGTGA+CGG + tig0024566:54083-54102 Msa1418280:intron 15.0%
!! GCTTAATAAATTATTACATA+AGG - tig0024566:55520-55539 None:intergenic 15.0%
!! AATTCGTATAAAGTTAAATT+GGG - tig0024566:56004-56023 None:intergenic 15.0%
!! AAATTCGTATAAAGTTAAAT+TGG - tig0024566:56005-56024 None:intergenic 15.0%
!!! ATTTAACTTTATACGAATTT+TGG + tig0024566:56005-56024 Msa1418280:three_prime_UTR 15.0%
!! TATTTATTTATGATGTGATA+TGG + tig0024566:56071-56090 Msa1418280:three_prime_UTR 15.0%
!! AATGAAATAAAGGATCTATA+TGG - tig0024566:52667-52686 None:intergenic 20.0%
!! AAGTATGTATGATCTAATAT+TGG - tig0024566:52719-52738 None:intergenic 20.0%
!! AAAACACACAAAAAACTAAA+GGG - tig0024566:52813-52832 None:intergenic 20.0%
!! AAAAACACACAAAAAACTAA+AGG - tig0024566:52814-52833 None:intergenic 20.0%
!!! TTTTTTGTGTGTTTTTCATT+TGG + tig0024566:52818-52837 Msa1418280:intron 20.0%
!! TTCAATGAACCTAAAAAAAA+TGG + tig0024566:53172-53191 Msa1418280:intron 20.0%
!! TTACTTATAAATGTAACCAA+AGG + tig0024566:53198-53217 Msa1418280:intron 20.0%
!! TACTTATAAATGTAACCAAA+GGG + tig0024566:53199-53218 Msa1418280:intron 20.0%
!!! AACTTATTATTATCCTTTTG+TGG + tig0024566:53346-53365 Msa1418280:intron 20.0%
!! TGCTAAAGTTATTGTTAATT+TGG + tig0024566:53592-53611 Msa1418280:intron 20.0%
!! TATAAGAAATACCAATTTGA+TGG + tig0024566:53887-53906 Msa1418280:intron 20.0%
!!! GTTTGATAATATCTTAAAAG+AGG + tig0024566:54361-54380 Msa1418280:CDS 20.0%
!!! TTTTTAATACTAAGGAAGTA+AGG + tig0024566:55230-55249 Msa1418280:intron 20.0%
!! TATATCTTTGATACAATCAA+CGG - tig0024566:55346-55365 None:intergenic 20.0%
!! TGATTGTATCAAAGATATAA+AGG + tig0024566:55347-55366 Msa1418280:CDS 20.0%
!!! AAATAAAGCATTTCTTCATT+TGG - tig0024566:55589-55608 None:intergenic 20.0%
!!! TTTAACTTTGTGTGTATATT+AGG + tig0024566:55641-55660 Msa1418280:three_prime_UTR 20.0%
!! GTCAAAAAATATATAATCTC+TGG + tig0024566:55671-55690 Msa1418280:three_prime_UTR 20.0%
!!! AAAAATCCAGTTTTTAGAAT+AGG - tig0024566:55977-55996 None:intergenic 20.0%
!! ATTCGTATAAAGTTAAATTG+GGG - tig0024566:56003-56022 None:intergenic 20.0%
! CCATAAAAAAGAAAGAAACA+CGG + tig0024566:52454-52473 Msa1418280:five_prime_UTR 25.0%
!! TGGTGGACAATAATTATTTA+TGG - tig0024566:52519-52538 None:intergenic 25.0%
! TTTGAGGAAGAAATTAAGAA+AGG - tig0024566:52574-52593 None:intergenic 25.0%
! AGATATTCTTCATAAGATGA+AGG + tig0024566:52634-52653 Msa1418280:CDS 25.0%
! AAACACACAAAAAACTAAAG+GGG - tig0024566:52812-52831 None:intergenic 25.0%
!!! TTTGACTTGTATTTGACTAA+AGG + tig0024566:52855-52874 Msa1418280:intron 25.0%
! CATTGAATAACGAATGTATT+TGG - tig0024566:53159-53178 None:intergenic 25.0%
! GATAATAATAAGTTCGTGTT+TGG - tig0024566:53340-53359 None:intergenic 25.0%
! CAATTTAGCAAAATTCTTGA+TGG - tig0024566:53503-53522 None:intergenic 25.0%
!! TTATTGTTAATTTGGTGAAG+AGG + tig0024566:53600-53619 Msa1418280:intron 25.0%
!! TATTGTTAATTTGGTGAAGA+GGG + tig0024566:53601-53620 Msa1418280:intron 25.0%
! ACAAACAAACTAAAATGTTC+TGG - tig0024566:53650-53669 None:intergenic 25.0%
!!! AGAACATTTTAGTTTGTTTG+TGG + tig0024566:53649-53668 Msa1418280:intron 25.0%
! TCAATTAATTCTGATATCGT+TGG - tig0024566:53682-53701 None:intergenic 25.0%
! AGAAAAACATTCCATCAAAT+TGG - tig0024566:53901-53920 None:intergenic 25.0%
! AAACTTTAATTAGCTAATGG+AGG - tig0024566:54006-54025 None:intergenic 25.0%
! TGCAAACTTTAATTAGCTAA+TGG - tig0024566:54009-54028 None:intergenic 25.0%
! ATATATAGAATACTAAGCGA+GGG - tig0024566:54075-54094 None:intergenic 25.0%
! AATATATAGAATACTAAGCG+AGG - tig0024566:54076-54095 None:intergenic 25.0%
!! CAAATTGATAACCATGAATT+AGG + tig0024566:54275-54294 Msa1418280:CDS 25.0%
!!! TTGTTCAAGTTGATTCTTTT+AGG - tig0024566:54480-54499 None:intergenic 25.0%
!!! CTTCTCTAAAATACTAGAAT+CGG - tig0024566:54617-54636 None:intergenic 25.0%
! CATGAGGATATAAAAAATAG+AGG + tig0024566:54793-54812 Msa1418280:CDS 25.0%
! ATTATAAAGTGTATCATACC+TGG - tig0024566:54838-54857 None:intergenic 25.0%
! AGGTATGATACACTTTATAA+TGG + tig0024566:54837-54856 Msa1418280:intron 25.0%
!!! ATCTTTTTTGTCATCTAATC+AGG + tig0024566:55004-55023 Msa1418280:intron 25.0%
!!! TCTTTTTTGTCATCTAATCA+GGG + tig0024566:55005-55024 Msa1418280:intron 25.0%
! TATGCATGCATATTTAACTA+GGG + tig0024566:55270-55289 Msa1418280:intron 25.0%
! GTTTATTCATATATGATTCC+AGG + tig0024566:55302-55321 Msa1418280:intron 25.0%
! TAAGCTTAATATCCATTAGA+TGG + tig0024566:55535-55554 Msa1418280:three_prime_UTR 25.0%
! AGCAAAATAATACCATCTAA+TGG - tig0024566:55550-55569 None:intergenic 25.0%
! CTTATATTGACCAAACTTAA+TGG - tig0024566:55719-55738 None:intergenic 25.0%
! TTCGTATAAAGTTAAATTGG+GGG - tig0024566:56002-56021 None:intergenic 25.0%
! AATGACCTAAAAATAAGATG+AGG - tig0024566:56032-56051 None:intergenic 25.0%
!!! CCGTGTTTCTTTCTTTTTTA+TGG - tig0024566:52457-52476 None:intergenic 30.0%
ATATATTTCCCTACAGATCA+GGG - tig0024566:52898-52917 None:intergenic 30.0%
! ATTGTGTGTATCTTTGTTTC+TGG + tig0024566:52925-52944 Msa1418280:intron 30.0%
! TTGTGTGTATCTTTGTTTCT+GGG + tig0024566:52926-52945 Msa1418280:intron 30.0%
! TTTTTGCTTACAAATGTGAC+CGG - tig0024566:53085-53104 None:intergenic 30.0%
CATTGCATAACTAATGTATC+CGG + tig0024566:53121-53140 Msa1418280:intron 30.0%
AATGTATCCGGTCTATATAT+AGG + tig0024566:53133-53152 Msa1418280:intron 30.0%
TATTTGGCCTATATATAGAC+CGG - tig0024566:53143-53162 None:intergenic 30.0%
TTAGTACATGTTTGGTATCA+CGG + tig0024566:53228-53247 Msa1418280:intron 30.0%
TGATACAAGTTAACAAGAGA+CGG - tig0024566:53376-53395 None:intergenic 30.0%
AACTTGTATCATCACCAATT+TGG + tig0024566:53385-53404 Msa1418280:intron 30.0%
TTATACCTCCATATGTTGTT+TGG + tig0024566:53821-53840 Msa1418280:intron 30.0%
TTATGCATCCAAACAACATA+TGG - tig0024566:53832-53851 None:intergenic 30.0%
ATGCATAAGATTTCCTATTG+TGG + tig0024566:53844-53863 Msa1418280:intron 30.0%
AAGATCATATCATGAAATGG+AGG + tig0024566:54229-54248 Msa1418280:CDS 30.0%
GTTAAGAAGTAACCAGAAAA+GGG - tig0024566:54393-54412 None:intergenic 30.0%
AGTTAAGAAGTAACCAGAAA+AGG - tig0024566:54394-54413 None:intergenic 30.0%
!! TCTAGTATTTTAGAGAAGTC+AGG + tig0024566:54619-54638 Msa1418280:CDS 30.0%
AAGTTAGTAGTAGCCAATAT+CGG + tig0024566:54697-54716 Msa1418280:CDS 30.0%
GAGGATATAAAAAATAGAGG+TGG + tig0024566:54796-54815 Msa1418280:CDS 30.0%
TGCTTAGTAAAAAGTTCGAT+CGG + tig0024566:54948-54967 Msa1418280:intron 30.0%
!!! CTTTTTTGTCATCTAATCAG+GGG + tig0024566:55006-55025 Msa1418280:intron 30.0%
! TTTGTTATATTAGCCAGTGA+TGG + tig0024566:55148-55167 Msa1418280:CDS 30.0%
AGCATAATGCAAATACCTTA+TGG + tig0024566:55200-55219 Msa1418280:intron 30.0%
GTTAAATATGCATGCATACA+TGG - tig0024566:55268-55287 None:intergenic 30.0%
GTATGCATGCATATTTAACT+AGG + tig0024566:55269-55288 Msa1418280:intron 30.0%
TCAAAGATATAAAGGATGCT+CGG + tig0024566:55355-55374 Msa1418280:CDS 30.0%
CATAAGGTATATGTTACACT+TGG - tig0024566:55504-55523 None:intergenic 30.0%
!! TCTTCATTTGGTTTGTATGA+AGG - tig0024566:55577-55596 None:intergenic 30.0%
TGTGTGTATATTAGGAACTT+TGG + tig0024566:55649-55668 Msa1418280:three_prime_UTR 30.0%
AGATACTTTGCCATTAAGTT+TGG + tig0024566:55706-55725 Msa1418280:three_prime_UTR 30.0%
GTCAATATAAGTGATCTATG+TGG + tig0024566:55728-55747 Msa1418280:three_prime_UTR 30.0%
AAAGTTTCTTACACACAGAA+GGG + tig0024566:55762-55781 Msa1418280:three_prime_UTR 30.0%
!!! TTGGTCCTCATCTTATTTTT+AGG + tig0024566:56024-56043 Msa1418280:three_prime_UTR 30.0%
!! GTAGATATGTCTTTTCAAGC+TGG + tig0024566:52476-52495 Msa1418280:five_prime_UTR 35.0%
ACAGATCAGGGTTATTTGAA+AGG - tig0024566:52886-52905 None:intergenic 35.0%
TTCAAATAACCCTGATCTGT+AGG + tig0024566:52886-52905 Msa1418280:intron 35.0%
TCAAATAACCCTGATCTGTA+GGG + tig0024566:52887-52906 Msa1418280:intron 35.0%
GATATATTTCCCTACAGATC+AGG - tig0024566:52899-52918 None:intergenic 35.0%
GTGTGAATTGTTCAAAGTGA+AGG + tig0024566:53001-53020 Msa1418280:intron 35.0%
!! AGCTGTCACTTTCTTTATCA+CGG + tig0024566:53042-53061 Msa1418280:intron 35.0%
! ATGTACTAAAGTACTCCCTT+TGG - tig0024566:53217-53236 None:intergenic 35.0%
! GGAGTACTTTAGTACATGTT+TGG + tig0024566:53220-53239 Msa1418280:intron 35.0%
TAAGTTCGTGTTTGGTATCA+TGG - tig0024566:53332-53351 None:intergenic 35.0%
TGTATCATCACCAATTTGGA+TGG + tig0024566:53389-53408 Msa1418280:intron 35.0%
AGTTTAACTATACACACCCT+AGG - tig0024566:53475-53494 None:intergenic 35.0%
!!! TTTTAGTTTGTTTGTGGCCA+CGG + tig0024566:53655-53674 Msa1418280:intron 35.0%
GTGATTGTCTATGAAGAAAG+AGG - tig0024566:53714-53733 None:intergenic 35.0%
CTTTCTTCATAGACAATCAC+TGG + tig0024566:53714-53733 Msa1418280:intron 35.0%
TTGTCGTTACTCTTTCACAA+TGG - tig0024566:53769-53788 None:intergenic 35.0%
GACTGGTAACTTCTAATACT+TGG - tig0024566:53950-53969 None:intergenic 35.0%
TCATGCAAAGATTGAGAAGA+TGG + tig0024566:53968-53987 Msa1418280:intron 35.0%
GTCATTTGACATTAGCATGT+TGG + tig0024566:54105-54124 Msa1418280:intron 35.0%
ATGTCGAAACACATAACTCA+CGG + tig0024566:54188-54207 Msa1418280:CDS 35.0%
GGGAAGATCATATCATGAAA+TGG + tig0024566:54226-54245 Msa1418280:CDS 35.0%
TTGCAAACAAGCCTAATTCA+TGG - tig0024566:54289-54308 None:intergenic 35.0%
! GGCTTGTTTGCAATATTTGA+TGG + tig0024566:54296-54315 Msa1418280:CDS 35.0%
AAATGAGACTGCAAGTAGTT+AGG - tig0024566:54341-54360 None:intergenic 35.0%
TTTAGAGAAGTCAGGTGAAT+TGG + tig0024566:54627-54646 Msa1418280:CDS 35.0%
TTAGAGAAGTCAGGTGAATT+GGG + tig0024566:54628-54647 Msa1418280:CDS 35.0%
AGTTAGTAGTAGCCAATATC+GGG + tig0024566:54698-54717 Msa1418280:CDS 35.0%
TGTCTTATCAAAGAAAGGTG+TGG + tig0024566:54732-54751 Msa1418280:CDS 35.0%
ATATCCTCATGTTCTGTGTT+TGG - tig0024566:54784-54803 None:intergenic 35.0%
!! GGTTTTGTATCAAGATTTCC+AGG + tig0024566:54817-54836 Msa1418280:CDS 35.0%
TAGACTTTAATCCAGTACTG+AGG + tig0024566:54977-54996 Msa1418280:intron 35.0%
AAAAGATGTATCCTCAGTAC+TGG - tig0024566:54991-55010 None:intergenic 35.0%
! AAGGAAGTAAGGATTAGTGT+TGG + tig0024566:55241-55260 Msa1418280:intron 35.0%
! CTTCTTGATTTGACATTACC+TGG - tig0024566:55323-55342 None:intergenic 35.0%
CAAAGATATAAAGGATGCTC+GGG + tig0024566:55356-55375 Msa1418280:CDS 35.0%
! AATGGCAAAGTATCTGCAAA+TGG - tig0024566:55701-55720 None:intergenic 35.0%
CTTCTGTGTGTAAGAAACTT+TGG - tig0024566:55763-55782 None:intergenic 35.0%
CAAAGTTTCTTACACACAGA+AGG + tig0024566:55761-55780 Msa1418280:three_prime_UTR 35.0%
CTGTGTTGGGTACAATAATT+TGG - tig0024566:55817-55836 None:intergenic 35.0%
AACACATGAGAAGTTCTTCA+AGG + tig0024566:55851-55870 Msa1418280:three_prime_UTR 35.0%
ACACATGAGAAGTTCTTCAA+GGG + tig0024566:55852-55871 Msa1418280:three_prime_UTR 35.0%
! TGGTCTCCTATTCTAAAAAC+TGG + tig0024566:55968-55987 Msa1418280:three_prime_UTR 35.0%
CTTGAGAGTGATGAAGATGA+TGG - tig0024566:52539-52558 None:intergenic 40.0%
!! GTTTGGTTTGGTTTGGTTTG+AGG - tig0024566:52590-52609 None:intergenic 40.0%
!! ATGAGTGGTTTGGTTTGGTT+TGG - tig0024566:52597-52616 None:intergenic 40.0%
AATATCTCTAGCAGCCATGA+GGG - tig0024566:52621-52640 None:intergenic 40.0%
!! TGTATCTTTGTTTCTGGGTC+AGG + tig0024566:52931-52950 Msa1418280:intron 40.0%
GTGATAAAGAAAGTGACAGC+TGG - tig0024566:53043-53062 None:intergenic 40.0%
CGGTGAGTTTATCGAAATCA+TGG + tig0024566:53248-53267 Msa1418280:intron 40.0%
AAGAGACGGTAAACCACAAA+AGG - tig0024566:53362-53381 None:intergenic 40.0%
CAGAAGTCTACCATCCAAAT+TGG - tig0024566:53402-53421 None:intergenic 40.0%
ATTTGGATGGTAGACTTCTG+TGG + tig0024566:53402-53421 Msa1418280:intron 40.0%
AGCTCATTCTTTCATGACCT+AGG + tig0024566:53455-53474 Msa1418280:intron 40.0%
GCTCATTCTTTCATGACCTA+GGG + tig0024566:53456-53475 Msa1418280:intron 40.0%
CATCTTTCCTAGAAGAGAGT+AGG - tig0024566:53545-53564 None:intergenic 40.0%
! CTACTCTCTTCTAGGAAAGA+TGG + tig0024566:53543-53562 Msa1418280:intron 40.0%
!! CTTCTAGGAAAGATGGACTA+TGG + tig0024566:53550-53569 Msa1418280:intron 40.0%
TGCATCCAAACAACATATGG+AGG - tig0024566:53829-53848 None:intergenic 40.0%
AGATTTCCTATTGTGGATGC+TGG + tig0024566:53851-53870 Msa1418280:intron 40.0%
TTGTTTCCAGCATCCACAAT+AGG - tig0024566:53860-53879 None:intergenic 40.0%
CTTCTCAATCTTTGCATGAC+TGG - tig0024566:53967-53986 None:intergenic 40.0%
TTGCAGGAGAAAGTTGGATT+TGG + tig0024566:54128-54147 Msa1418280:intron 40.0%
GTTTATCAGACCCTGATTCA+GGG + tig0024566:54150-54169 Msa1418280:CDS 40.0%
TCTTTCCTTTCCCTGAATCA+GGG - tig0024566:54163-54182 None:intergenic 40.0%
! AAGAGGTAACTTCCCTTTTC+TGG + tig0024566:54378-54397 Msa1418280:intron 40.0%
CATGGGAAAAAATGGATGGT+TGG - tig0024566:54539-54558 None:intergenic 40.0%
GCTACATGGGAAAAAATGGA+TGG - tig0024566:54543-54562 None:intergenic 40.0%
TCAGGCTACATGGGAAAAAA+TGG - tig0024566:54547-54566 None:intergenic 40.0%
AGAACCTGTAAATGCTGTCA+AGG + tig0024566:54576-54595 Msa1418280:CDS 40.0%
! GTTACCGCGATATTGATTGA+TGG + tig0024566:54670-54689 Msa1418280:CDS 40.0%
CTGACCATCAATCAATATCG+CGG - tig0024566:54677-54696 None:intergenic 40.0%
GTTAGTAGTAGCCAATATCG+GGG + tig0024566:54699-54718 Msa1418280:CDS 40.0%
ATGATCCACTGACAGTTGTT+TGG - tig0024566:54758-54777 None:intergenic 40.0%
TGAACCAAACACAGAACATG+AGG + tig0024566:54777-54796 Msa1418280:CDS 40.0%
ATCTTCTCTACTGTCACATG+TGG - tig0024566:55112-55131 None:intergenic 40.0%
!! TATTAGCCAGTGATGGATTG+TGG + tig0024566:55155-55174 Msa1418280:CDS 40.0%
TGTTAACTGCTTCTTCAGTG+AGG - tig0024566:55395-55414 None:intergenic 40.0%
TCACTGAAGAAGCAGTTAAC+AGG + tig0024566:55394-55413 Msa1418280:CDS 40.0%
GATAACTCTGCATCTGTGTT+GGG - tig0024566:55830-55849 None:intergenic 40.0%
AGATAACTCTGCATCTGTGT+TGG - tig0024566:55831-55850 None:intergenic 40.0%
CACATGAGAAGTTCTTCAAG+GGG + tig0024566:55853-55872 Msa1418280:three_prime_UTR 40.0%
TAGTAGGTAACGCGTGAAAG+TGG + tig0024566:52395-52414 Msa1418280:five_prime_UTR 45.0%
! GAGAGTGATGAAGATGATGG+TGG - tig0024566:52536-52555 None:intergenic 45.0%
!! AGGGAATGAGTGGTTTGGTT+TGG - tig0024566:52602-52621 None:intergenic 45.0%
GAATATCTCTAGCAGCCATG+AGG - tig0024566:52622-52641 None:intergenic 45.0%
! AGTGACAGCTGGTTAGTTCT+AGG - tig0024566:53032-53051 None:intergenic 45.0%
TGCTTACAAATGTGACCGGA+CGG - tig0024566:53081-53100 None:intergenic 45.0%
GTGCTTACCTACTCTCTTCT+AGG + tig0024566:53535-53554 Msa1418280:intron 45.0%
ATTCTGATATCGTTGGTCCG+TGG - tig0024566:53675-53694 None:intergenic 45.0%
! GACATTAGCATGTTGGTTGC+AGG + tig0024566:54112-54131 Msa1418280:intron 45.0%
! TGTTGGTTGCAGGAGAAAGT+TGG + tig0024566:54122-54141 Msa1418280:intron 45.0%
GGTTTATCAGACCCTGATTC+AGG + tig0024566:54149-54168 Msa1418280:CDS 45.0%
CTCTTTCCTTTCCCTGAATC+AGG - tig0024566:54164-54183 None:intergenic 45.0%
CATAACTCACGGCTTTCACT+TGG + tig0024566:54199-54218 Msa1418280:CDS 45.0%
TCACGGCTTTCACTTGGTAA+AGG + tig0024566:54205-54224 Msa1418280:CDS 45.0%
CACGGCTTTCACTTGGTAAA+GGG + tig0024566:54206-54225 Msa1418280:CDS 45.0%
! GCAATATTTGATGGCCATGC+TGG + tig0024566:54305-54324 Msa1418280:CDS 45.0%
TAGGTACATTGTGACCAGCA+TGG - tig0024566:54322-54341 None:intergenic 45.0%
GCTTCCTTGACAGCATTTAC+AGG - tig0024566:54583-54602 None:intergenic 45.0%
AAGTCAGGTGAATTGGGAAG+AGG + tig0024566:54634-54653 Msa1418280:CDS 45.0%
AGTCAGGTGAATTGGGAAGA+GGG + tig0024566:54635-54654 Msa1418280:CDS 45.0%
TAGCCAATATCGGGGATTCT+CGG + tig0024566:54707-54726 Msa1418280:CDS 45.0%
CGGGCTGTCTTATCAAAGAA+AGG + tig0024566:54727-54746 Msa1418280:CDS 45.0%
AGATATAAAGGATGCTCGGG+CGG + tig0024566:55359-55378 Msa1418280:CDS 45.0%
GAAAAGCAGCGACGATATCT+CGG + tig0024566:55416-55435 Msa1418280:CDS 45.0%
!!! ACTTTTTATTTTAAAATATA+GGG - tig0024566:55946-55965 None:intergenic 5.0%
!!! AACTTTTTATTTTAAAATAT+AGG - tig0024566:55947-55966 None:intergenic 5.0%
!!! TATTTTAAAATAAAAAGTTT+TGG + tig0024566:55948-55967 Msa1418280:three_prime_UTR 5.0%
CCATGAGGGAATGAGTGGTT+TGG - tig0024566:52607-52626 None:intergenic 50.0%
CCAAACCACTCATTCCCTCA+TGG + tig0024566:52604-52623 Msa1418280:exon 50.0%
GAAGAGGGTGAGAAAGTTGC+TGG + tig0024566:53616-53635 Msa1418280:intron 50.0%
TCAGACCCTGATTCAGGGAA+AGG + tig0024566:54155-54174 Msa1418280:CDS 50.0%
TTCCCATGTAGCCTGACTTC+TGG + tig0024566:54551-54570 Msa1418280:intron 50.0%
GTCCAGAAGTCAGGCTACAT+GGG - tig0024566:54556-54575 None:intergenic 50.0%
TGTCCAGAAGTCAGGCTACA+TGG - tig0024566:54557-54576 None:intergenic 50.0%
ACAGGTTCTGTCCAGAAGTC+AGG - tig0024566:54565-54584 None:intergenic 50.0%
GTCAGGTGAATTGGGAAGAG+GGG + tig0024566:54636-54655 Msa1418280:CDS 50.0%
TCAGGTGAATTGGGAAGAGG+GGG + tig0024566:54637-54656 Msa1418280:CDS 50.0%
AGCCAATATCGGGGATTCTC+GGG + tig0024566:54708-54727 Msa1418280:CDS 50.0%
TGTGGCCAAACAACTGTCAG+TGG + tig0024566:54750-54769 Msa1418280:CDS 50.0%
!! ACGTTCCACGAGTTGATGGA+CGG + tig0024566:55029-55048 Msa1418280:CDS 50.0%
!! AGCCAGTGATGGATTGTGGA+AGG + tig0024566:55159-55178 Msa1418280:CDS 50.0%
GACCTTCCACAATCCATCAC+TGG - tig0024566:55164-55183 None:intergenic 50.0%
AGCAGCCATGAGGGAATGAG+TGG - tig0024566:52612-52631 None:intergenic 55.0%
! GGCATGCTGTTTACTCCGTC+CGG + tig0024566:53063-53082 Msa1418280:intron 55.0%
AGCCCGAGAATCCCCGATAT+TGG - tig0024566:54713-54732 None:intergenic 55.0%
!! TCCACGAGTTGATGGACGGT+TGG + tig0024566:55033-55052 Msa1418280:CDS 55.0%
!! TTGGCAGTGTCGAGGGCATT+TGG + tig0024566:55052-55071 Msa1418280:CDS 55.0%
! GGGGACGTTCCACGAGTTGA+TGG + tig0024566:55025-55044 Msa1418280:intron 60.0%
GCCAACCGTCCATCAACTCG+TGG - tig0024566:55037-55056 None:intergenic 60.0%
ATGGACGGTTGGCAGTGTCG+AGG + tig0024566:55044-55063 Msa1418280:CDS 60.0%
! TGGACGGTTGGCAGTGTCGA+GGG + tig0024566:55045-55064 Msa1418280:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0024566 gene 52390 56125 52390 ID=Msa1418280;Name=Msa1418280
tig0024566 mRNA 52390 56125 52390 ID=Msa1418280-mRNA-1;Parent=Msa1418280;Name=Msa1418280-mRNA-1;_AED=0.07;_eAED=0.07;_QI=233|1|1|1|1|1|5|664|283
tig0024566 exon 52390 52655 52390 ID=Msa1418280-mRNA-1:exon:274;Parent=Msa1418280-mRNA-1
tig0024566 exon 54134 54382 54134 ID=Msa1418280-mRNA-1:exon:275;Parent=Msa1418280-mRNA-1
tig0024566 exon 54562 54838 54562 ID=Msa1418280-mRNA-1:exon:276;Parent=Msa1418280-mRNA-1
tig0024566 exon 55026 55180 55026 ID=Msa1418280-mRNA-1:exon:277;Parent=Msa1418280-mRNA-1
tig0024566 exon 55324 56125 55324 ID=Msa1418280-mRNA-1:exon:278;Parent=Msa1418280-mRNA-1
tig0024566 five_prime_UTR 52390 52622 52390 ID=Msa1418280-mRNA-1:five_prime_utr;Parent=Msa1418280-mRNA-1
tig0024566 CDS 52623 52655 52623 ID=Msa1418280-mRNA-1:cds;Parent=Msa1418280-mRNA-1
tig0024566 CDS 54134 54382 54134 ID=Msa1418280-mRNA-1:cds;Parent=Msa1418280-mRNA-1
tig0024566 CDS 54562 54838 54562 ID=Msa1418280-mRNA-1:cds;Parent=Msa1418280-mRNA-1
tig0024566 CDS 55026 55180 55026 ID=Msa1418280-mRNA-1:cds;Parent=Msa1418280-mRNA-1
tig0024566 CDS 55324 55461 55324 ID=Msa1418280-mRNA-1:cds;Parent=Msa1418280-mRNA-1
tig0024566 three_prime_UTR 55462 56125 55462 ID=Msa1418280-mRNA-1:three_prime_utr;Parent=Msa1418280-mRNA-1
Gene Sequence

>Msa1418280

ATGGCTGCTAGAGATATTCTTCATAAGATGAAGGAGAAAGTTGGATTTGGTTTATCAGACCCTGATTCAGGGAAAGGAAAGAGCAAGATGTCGAAACACATAACTCACGGCTTTCACTTGGTAAAGGGAAGATCATATCATGAAATGGAGGATTATCTTGTTGCTAGATTTAAGCAAATTGATAACCATGAATTAGGCTTGTTTGCAATATTTGATGGCCATGCTGGTCACAATGTACCTAACTACTTGCAGTCTCATTTGTTTGATAATATCTTAAAAGAGCCTGACTTCTGGACAGAACCTGTAAATGCTGTCAAGGAAGCGTATAGTATAACCGATTCTAGTATTTTAGAGAAGTCAGGTGAATTGGGAAGAGGGGGTTCAACAGCAGTTACCGCGATATTGATTGATGGTCAGAAGTTAGTAGTAGCCAATATCGGGGATTCTCGGGCTGTCTTATCAAAGAAAGGTGTGGCCAAACAACTGTCAGTGGATCATGAACCAAACACAGAACATGAGGATATAAAAAATAGAGGTGGTTTTGTATCAAGATTTCCAGGGGACGTTCCACGAGTTGATGGACGGTTGGCAGTGTCGAGGGCATTTGGTGACAAAAGCTTGAAGAAACACTTGAGTTCAGAGCCACATGTGACAGTAGAGAAGATAAGTGAAGATGCAGAGTTTGTTATATTAGCCAGTGATGGATTGTGGAAGGTAATGTCAAATCAAGAAGCCGTTGATTGTATCAAAGATATAAAGGATGCTCGGGCGGCAGCAAAGCGCCTCACTGAAGAAGCAGTTAACAGGAAAAGCAGCGACGATATCTCGGTCATCGTTGTGAAACTTCAGTGA

Protein sequence

>Msa1418280

MAARDILHKMKEKVGFGLSDPDSGKGKSKMSKHITHGFHLVKGRSYHEMEDYLVARFKQIDNHELGLFAIFDGHAGHNVPNYLQSHLFDNILKEPDFWTEPVNAVKEAYSITDSSILEKSGELGRGGSTAVTAILIDGQKLVVANIGDSRAVLSKKGVAKQLSVDHEPNTEHEDIKNRGGFVSRFPGDVPRVDGRLAVSRAFGDKSLKKHLSSEPHVTVEKISEDAEFVILASDGLWKVMSNQEAVDCIKDIKDARAAAKRLTEEAVNRKSSDDISVIVVKLQ*