AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0790440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790440 MtrunA17_Chr2g0276961 95.356 323 4 3 1 323 1 312 0.0 616
Msa0790440 MtrunA17_Chr3g0080071 49.536 323 114 12 14 321 3 291 1.21e-85 259
Msa0790440 MtrunA17_Chr8g0334451 52.874 261 107 5 63 323 32 276 2.00e-82 251
Msa0790440 MtrunA17_Chr3g0108401 50.558 269 115 7 58 321 5 260 1.71e-79 243
Msa0790440 MtrunA17_Chr7g0245301 50.951 263 118 4 63 323 28 281 6.08e-79 242
Msa0790440 MtrunA17_Chr5g0432901 50.746 268 112 6 58 321 28 279 2.84e-78 240
Msa0790440 MtrunA17_Chr4g0018581 46.774 124 59 3 173 296 217 333 7.61e-26 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0790440 AT1G09660.1 59.547 309 89 8 19 321 18 296 8.53e-110 321
Msa0790440 AT1G09660.3 59.547 309 89 8 19 321 18 296 8.53e-110 321
Msa0790440 AT4G26480.3 49.837 307 123 9 21 321 25 306 2.78e-84 257
Msa0790440 AT4G26480.1 49.837 307 123 9 21 321 25 306 2.78e-84 257
Msa0790440 AT1G09660.2 56.538 260 82 6 19 274 18 250 3.05e-83 253
Msa0790440 AT5G56140.1 50.340 294 123 7 32 321 38 312 1.14e-81 250
Msa0790440 AT3G08620.1 52.091 263 115 4 63 323 30 283 6.68e-80 244
Msa0790440 AT2G38610.2 50.923 271 112 8 60 322 28 285 2.11e-76 236
Msa0790440 AT2G38610.1 50.923 271 112 8 60 322 28 285 2.11e-76 236
Msa0790440 AT3G08620.2 51.012 247 110 4 79 323 1 238 1.20e-70 219
Msa0790440 AT4G26480.2 64.000 175 57 4 148 321 52 221 4.69e-69 215
Msa0790440 AT5G51300.1 47.581 124 58 3 173 296 244 360 1.77e-25 107
Msa0790440 AT5G51300.2 47.581 124 58 3 173 296 244 360 1.77e-25 107
Msa0790440 AT5G51300.3 47.581 124 58 3 173 296 244 360 1.77e-25 107

Find 147 sgRNAs with CRISPR-Local

Find 654 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATCTGATTTAGAATTTA+TGG 0.074104 5_3:+1225366 Msa0790440:three_prime_UTR
CGGTGCCAGCGGCTTTATTA+TGG 0.231411 5_3:+1222533 Msa0790440:CDS
ACAAGTGCAATGGCTCTTTA+AGG 0.242643 5_3:-1224959 None:intergenic
TGCAATGCATTACCTCTCTA+TGG 0.254875 5_3:-1222644 None:intergenic
CTTGAAAGGATCCCATTCTT+TGG 0.276158 5_3:-1224166 None:intergenic
CGCAGCAGTTGGGGTTCTCT+TGG 0.297747 5_3:+1221703 None:intergenic
TTGTGGGAGAACTTGCAAAA+AGG 0.318876 5_3:-1222469 None:intergenic
CTCTGTGAAGGATTCGATTA+AGG 0.328927 5_3:+1224475 Msa0790440:CDS
GACTCCCTCCTTCTCCTATC+AGG 0.330439 5_3:+1222271 Msa0790440:CDS
GGAGGAGGAGGAGCGGGAGC+AGG 0.333878 5_3:-1222207 None:intergenic
ATTATTATTATTCCCAGATT+GGG 0.340347 5_3:-1222139 None:intergenic
CATATTCCACAATCAAATTC+CGG 0.343097 5_3:-1225797 None:intergenic
AAGATTGACTGTTAACATAC+TGG 0.343921 5_3:-1225319 None:intergenic
TATTATTATTATTCCCAGAT+TGG 0.356424 5_3:-1222140 None:intergenic
ATTTATGGTGGCCTTTCTGC+AGG 0.366745 5_3:+1225381 Msa0790440:three_prime_UTR
GCTTCGCTGCGTGTGGAGTT+TGG 0.373802 5_3:+1221725 Msa0790440:five_prime_UTR
CAGGAGCATGAGGAGGGAAT+TGG 0.377923 5_3:-1222188 None:intergenic
CTGATAACTCTCTTCACTAT+AGG 0.381788 5_3:-1224233 None:intergenic
GCATCTCCAGTGGGTTGGCA+TGG 0.392051 5_3:+1224188 Msa0790440:CDS
TCGCGATCGGAGAACCTGAT+AGG 0.403053 5_3:-1222285 None:intergenic
CTTTCTGCAGGGCTGGTCGA+TGG 0.412461 5_3:+1225393 Msa0790440:three_prime_UTR
TAGATATTTGGCCGAACTCT+TGG 0.413533 5_3:+1222425 Msa0790440:intron
CTATAGTGAAGAGAGTTATC+AGG 0.414243 5_3:+1224234 Msa0790440:CDS
CTATTGAAAGGTGACATACT+TGG 0.416568 5_3:-1225260 None:intergenic
TAAAGAGCCATTGCACTTGT+TGG 0.421722 5_3:+1224962 Msa0790440:CDS
GACATACTTGGACTCATACT+AGG 0.423494 5_3:-1225248 None:intergenic
AAGGATAGAAGATGGGAGAG+TGG 0.428420 5_3:+1222112 Msa0790440:exon
TATGATCAATGGTACTTTGA+GGG 0.439845 5_3:+1225205 Msa0790440:CDS
CTGGGGTCATCTTCCTGTCT+TGG 0.441491 5_3:-1225300 None:intergenic
AGAAGAAGAAGGATAGAAGA+TGG 0.445365 5_3:+1222104 Msa0790440:exon
CAATGGGAATATCCAAAGAA+TGG 0.459480 5_3:+1224154 Msa0790440:CDS
GCAATGCATTACCTCTCTAT+GGG 0.459763 5_3:-1222643 None:intergenic
ACATTTGGATATTTGTCGAC+AGG 0.460627 5_3:-1224266 None:intergenic
GGAGCGGGAGCAGGAGCATG+AGG 0.461728 5_3:-1222198 None:intergenic
TTGTCTCTCAGCCAAGAGTT+CGG 0.463348 5_3:-1222436 None:intergenic
TGGTGGCCTTTCTGCAGGGC+TGG 0.464791 5_3:+1225386 Msa0790440:three_prime_UTR
ACATCCTATCACCAGGCCTA+TGG 0.465082 5_3:+1222608 Msa0790440:CDS
ATTAAAGTACCTTTCGCGAT+CGG 0.471477 5_3:-1222298 None:intergenic
TTAAGAGTCGGGTAGATTGT+GGG 0.477974 5_3:-1222485 None:intergenic
CTTGGCTGAGAGACAAAAGT+TGG 0.478339 5_3:+1222443 Msa0790440:CDS
CAGATGGTCATAATCTAGCT+TGG 0.478587 5_3:-1225351 None:intergenic
CATAATAAAGCCGCTGGCAC+CGG 0.478992 5_3:-1222532 None:intergenic
GCGGGAGCAGGAGCATGAGG+AGG 0.483859 5_3:-1222195 None:intergenic
CTATGATCAATGGTACTTTG+AGG 0.483911 5_3:+1225204 Msa0790440:CDS
CAAACTAGAAGTATGCTACT+AGG 0.491503 5_3:-1225535 None:intergenic
AATGGGAATATCCAAAGAAT+GGG 0.494069 5_3:+1224155 Msa0790440:CDS
TTCATTCCATTACTATTGAA+AGG 0.494268 5_3:-1225272 None:intergenic
TGTTCCCTATGCAGGACAAT+GGG 0.496093 5_3:+1224138 Msa0790440:intron
TTCAAGCATCTCCAGTGGGT+TGG 0.497725 5_3:+1224183 Msa0790440:CDS
AGATGGTCATAATCTAGCTT+GGG 0.498351 5_3:-1225350 None:intergenic
AGAGCCATTGCACTTGTTGG+TGG 0.501510 5_3:+1224965 Msa0790440:CDS
AAAGGAGTAGTAGAAGAGTC+AGG 0.501586 5_3:-1222567 None:intergenic
TCTCTTGGCTTCGCTGCGTG+TGG 0.502862 5_3:+1221718 Msa0790440:five_prime_UTR
TGTGGCCCATGCCAACCCAC+TGG 0.504009 5_3:-1224194 None:intergenic
AAATCCATAGGCCTGGTGAT+AGG 0.504456 5_3:-1222612 None:intergenic
GCCATTGCACTTGTTGGTGG+AGG 0.504952 5_3:+1224968 Msa0790440:CDS
AAACTAGAAGTATGCTACTA+GGG 0.508603 5_3:-1225534 None:intergenic
GGAATGAAACGTGCCAAGAC+AGG 0.508950 5_3:+1225287 Msa0790440:CDS
GAAGAAGAAGGATAGAAGAT+GGG 0.509491 5_3:+1222105 Msa0790440:exon
CTCATACTAGGGCTCATGCT+TGG 0.511219 5_3:-1225236 None:intergenic
ACTACAAGAAGCAGCAATTG+AGG 0.513008 5_3:+1225174 Msa0790440:CDS
GAAATCAGACGTATCTCATC+CGG 0.516750 5_3:+1222513 Msa0790440:CDS
ATGTCACCTTTCAATAGTAA+TGG 0.520448 5_3:+1225266 Msa0790440:CDS
TCCTTTCAAGCATCTCCAGT+GGG 0.523241 5_3:+1224179 Msa0790440:CDS
TGGAAGCCATGACAGAATGT+AGG 0.523637 5_3:+1224432 Msa0790440:CDS
CATCGACCAGCCCTGCAGAA+AGG 0.524029 5_3:-1225392 None:intergenic
TCTTTAAGGTGCTCATAACC+AGG 0.524384 5_3:-1224945 None:intergenic
TTATTATTATTCCCAGATTG+GGG 0.527052 5_3:-1222138 None:intergenic
GTTAAGAGTCGGGTAGATTG+TGG 0.529482 5_3:-1222486 None:intergenic
CGGGAATTGATTATATCCTC+AGG 0.529551 5_3:-1224999 None:intergenic
AGATTGACTGTTAACATACT+GGG 0.532125 5_3:-1225318 None:intergenic
CATCTCCAGTGGGTTGGCAT+GGG 0.533583 5_3:+1224189 Msa0790440:CDS
ACCCACTGGAGATGCTTGAA+AGG 0.533812 5_3:-1224180 None:intergenic
CTCTTCACTATAGGAGTCGT+CGG 0.537410 5_3:-1224224 None:intergenic
CGGGAGCAGGAGCATGAGGA+GGG 0.543247 5_3:-1222194 None:intergenic
TGTGGCGTGGTGATTGACTC+TGG 0.544819 5_3:+1221751 Msa0790440:five_prime_UTR
GTGATAGGATGTTGAGGTAA+GGG 0.547615 5_3:-1222597 None:intergenic
CTACAAGAAGCAGCAATTGA+GGG 0.548640 5_3:+1225175 Msa0790440:CDS
ACCATAAATTCTAAATCAGA+TGG 0.550364 5_3:-1225367 None:intergenic
CATTTGGATATTTGTCGACA+GGG 0.550943 5_3:-1224265 None:intergenic
TGATTTCCTGAGTTAAGAGT+CGG 0.551617 5_3:-1222497 None:intergenic
ATGTTCCATAATAAAGCCGC+TGG 0.554356 5_3:-1222538 None:intergenic
GAAGAGAAGTGAGTGAGTGA+AGG 0.555009 5_3:-1221786 None:intergenic
TGATAGGATGTTGAGGTAAG+GGG 0.555715 5_3:-1222596 None:intergenic
TCAGGTTCTCCGATCGCGAA+AGG 0.557194 5_3:+1222289 Msa0790440:CDS
CCAGTCGAAATCCATAGGCC+TGG 0.557763 5_3:-1222619 None:intergenic
GATTTCCTGAGTTAAGAGTC+GGG 0.558765 5_3:-1222496 None:intergenic
GGTGATAGGATGTTGAGGTA+AGG 0.559417 5_3:-1222598 None:intergenic
ACATACTTGGACTCATACTA+GGG 0.560928 5_3:-1225247 None:intergenic
TTTATGGTGGCCTTTCTGCA+GGG 0.561741 5_3:+1225382 Msa0790440:three_prime_UTR
GATAGGATGTTGAGGTAAGG+GGG 0.563174 5_3:-1222595 None:intergenic
CATGGTCATGGACATGGACA+TGG 0.563740 5_3:+1222243 Msa0790440:CDS
TTGGCTGAGAGACAAAAGTT+GGG 0.564376 5_3:+1222444 Msa0790440:CDS
TAAATAAACAAATGTAGTAG+TGG 0.564796 5_3:+1225666 Msa0790440:three_prime_UTR
AGGGTTTACATCAGAGGCTG+TGG 0.564960 5_3:+1224452 Msa0790440:CDS
CAGAGGCTGTGGCTCTGTGA+AGG 0.566382 5_3:+1224463 Msa0790440:CDS
CATGGACATGGACATGGACA+TGG 0.568563 5_3:+1222249 Msa0790440:CDS
ATGTTCCCTATGCAGGACAA+TGG 0.568763 5_3:+1224137 Msa0790440:intron
GGAAGCCATGACAGAATGTA+GGG 0.569325 5_3:+1224433 Msa0790440:CDS
AGGGAGTTAGCTATGATCAA+TGG 0.569405 5_3:+1225194 Msa0790440:CDS
GGATATAATCAATTCCCGCT+TGG 0.572726 5_3:+1225004 Msa0790440:CDS
GTGGGTTGGCATGGGCCACA+AGG 0.575059 5_3:+1224197 Msa0790440:CDS
CGGGAACTCGTTGAAAAGAG+TGG 0.575178 5_3:+1224412 Msa0790440:CDS
TGCCACAGCATGGTCCAAGC+GGG 0.575252 5_3:-1225018 None:intergenic
GCCTCCACCAACAAGTGCAA+TGG 0.578150 5_3:-1224969 None:intergenic
AACAAAACAGAGAAATTAAG+CGG 0.580450 5_3:-1225421 None:intergenic
ATCCTTTCAAGCATCTCCAG+TGG 0.582822 5_3:+1224178 Msa0790440:CDS
TGGGGCCAGTCGAAATCCAT+AGG 0.583655 5_3:-1222624 None:intergenic
TCGGAGAACCTGATAGGAGA+AGG 0.584650 5_3:-1222279 None:intergenic
GGTCGAATTCTGGGACCTCG+CGG 0.587318 5_3:+1224392 Msa0790440:CDS
GGTGATTGACTCTGGTGTCG+TGG 0.589163 5_3:+1221759 Msa0790440:five_prime_UTR
GTCGAATTCTGGGACCTCGC+GGG 0.589903 5_3:+1224393 Msa0790440:CDS
TACCTCAACATCCTATCACC+AGG 0.590777 5_3:+1222601 Msa0790440:CDS
TTCCCGCTTGGACCATGCTG+TGG 0.591859 5_3:+1225016 Msa0790440:CDS
GAATGTAGGGTTTACATCAG+AGG 0.599054 5_3:+1224446 Msa0790440:CDS
GAGAACCTGATAGGAGAAGG+AGG 0.599547 5_3:-1222276 None:intergenic
TTTCGACTGGCCCCATAGAG+AGG 0.600627 5_3:+1222632 Msa0790440:CDS
ATCTGATTTAGAATTTATGG+TGG 0.604203 5_3:+1225369 Msa0790440:three_prime_UTR
GTAAACCCTACATTCTGTCA+TGG 0.604388 5_3:-1224438 None:intergenic
CCAGGCCTATGGATTTCGAC+TGG 0.604436 5_3:+1222619 Msa0790440:CDS
TGTGTATATCTAAATATGCA+TGG 0.607204 5_3:+1225628 Msa0790440:three_prime_UTR
GAGTAGTAGAAGAGTCAGGA+TGG 0.607680 5_3:-1222563 None:intergenic
ATCTACCCGACTCTTAACTC+AGG 0.612173 5_3:+1222491 Msa0790440:CDS
GTACAGTCTTAACTAAGTTG+CGG 0.616322 5_3:+1225506 Msa0790440:three_prime_UTR
CGTATCTCATCCGGTGCCAG+CGG 0.617661 5_3:+1222522 Msa0790440:CDS
TATGTACCGGAATTTGATTG+TGG 0.618105 5_3:+1225791 Msa0790440:three_prime_UTR
TGTCCATGTCCATGACCATG+TGG 0.623116 5_3:-1222240 None:intergenic
GTCCATGTCCATGACCATGT+GGG 0.624947 5_3:-1222239 None:intergenic
AGAACCTGATAGGAGAAGGA+GGG 0.630410 5_3:-1222275 None:intergenic
TGGAGTTTGGCAGTGTGGCG+TGG 0.631308 5_3:+1221738 Msa0790440:five_prime_UTR
TCCATGTCCATGACCATGTG+GGG 0.635978 5_3:-1222238 None:intergenic
TTTCTAGTACTGCCACAGCA+TGG 0.639735 5_3:-1225028 None:intergenic
GGCCTGGTGATAGGATGTTG+AGG 0.640500 5_3:-1222603 None:intergenic
GAGAAGCTTAAAGATAAACC+TGG 0.641028 5_3:+1224927 Msa0790440:CDS
TACGACAGTCAATATTCTAG+CGG 0.652455 5_3:-1225470 None:intergenic
CTGCCACAGCATGGTCCAAG+CGG 0.660407 5_3:-1225019 None:intergenic
GATCAATGGTACTTTGAGGG+AGG 0.660469 5_3:+1225208 Msa0790440:CDS
GCGTGTGGAGTTTGGCAGTG+TGG 0.676441 5_3:+1221733 Msa0790440:five_prime_UTR
TATTATTATTCCCAGATTGG+GGG 0.682416 5_3:-1222137 None:intergenic
CAATGCATTACCTCTCTATG+GGG 0.692728 5_3:-1222642 None:intergenic
ATAGGATGTTGAGGTAAGGG+GGG 0.693945 5_3:-1222594 None:intergenic
GATTGACTGTTAACATACTG+GGG 0.695271 5_3:-1225317 None:intergenic
GGTGGAGGCAGAGTTTCCTG+AGG 0.696347 5_3:+1224983 Msa0790440:CDS
GGAGTCGTCGGAACTCCTTG+TGG 0.702280 5_3:-1224212 None:intergenic
CCATGTCCATGACCATGTGG+GGG 0.710004 5_3:-1222237 None:intergenic
GGTACATAAAACTACCACGA+TGG 0.733035 5_3:-1225776 None:intergenic
GAGTTTGCAAGTGACCATCG+TGG 0.769746 5_3:+1225762 Msa0790440:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAATAATAATAAT+AGG + chr5_3:1221926-1221945 Msa0790440:intron 0.0%
!! AATAATAATAATAATAATAA+TGG + chr5_3:1221925-1221944 Msa0790440:intron 0.0%
!! ATAATAATAATAATAATAAT+AGG + chr5_3:1221926-1221945 Msa0790440:intron 0.0%
!! AATAATAATAATAATAATAA+TGG + chr5_3:1221925-1221944 Msa0790440:intron 0.0%
!!! AAAAGATTTTATGAATTTTA+AGG + chr5_3:1223343-1223362 Msa0790440:intron 10.0%
!!! TTTAATAAATTAGATTTTGA+TGG - chr5_3:1223762-1223781 None:intergenic 10.0%
!!! AATATTGACTAAATAAATTT+AGG + chr5_3:1224754-1224773 Msa0790440:intron 10.0%
!!! AAAAGATTTTATGAATTTTA+AGG + chr5_3:1223343-1223362 Msa0790440:intron 10.0%
!!! TTTAATAAATTAGATTTTGA+TGG - chr5_3:1223762-1223781 None:intergenic 10.0%
!!! AATATTGACTAAATAAATTT+AGG + chr5_3:1224754-1224773 Msa0790440:intron 10.0%
!!! ATCAATCATTTTTAGATATT+TGG + chr5_3:1222413-1222432 Msa0790440:intron 15.0%
!!! AAGATTTTAAAAGATTTTGT+AGG + chr5_3:1223213-1223232 Msa0790440:intron 15.0%
!!! TTTACATCATAAGATTTTAA+AGG + chr5_3:1223297-1223316 Msa0790440:intron 15.0%
!!! TAAGATTTTAAAGGATTTTA+TGG + chr5_3:1223306-1223325 Msa0790440:intron 15.0%
!! TATATAATTCTTCAAATTGA+AGG - chr5_3:1224648-1224667 None:intergenic 15.0%
!!! TTTTTTATTTCTCATATGAA+TGG + chr5_3:1224840-1224859 Msa0790440:intron 15.0%
!! ATATTAATGAAAATTAGGAA+AGG - chr5_3:1224902-1224921 None:intergenic 15.0%
!!! TTCCTAATTTTCATTAATAT+AGG + chr5_3:1224902-1224921 Msa0790440:intron 15.0%
!! TTCCTATATTAATGAAAATT+AGG - chr5_3:1224907-1224926 None:intergenic 15.0%
!!! ATCAATCATTTTTAGATATT+TGG + chr5_3:1222413-1222432 Msa0790440:intron 15.0%
!!! AAGATTTTAAAAGATTTTGT+AGG + chr5_3:1223213-1223232 Msa0790440:intron 15.0%
!!! TTTACATCATAAGATTTTAA+AGG + chr5_3:1223297-1223316 Msa0790440:intron 15.0%
!!! TAAGATTTTAAAGGATTTTA+TGG + chr5_3:1223306-1223325 Msa0790440:intron 15.0%
!! TATATAATTCTTCAAATTGA+AGG - chr5_3:1224648-1224667 None:intergenic 15.0%
!!! TTTTTTATTTCTCATATGAA+TGG + chr5_3:1224840-1224859 Msa0790440:intron 15.0%
!! ATATTAATGAAAATTAGGAA+AGG - chr5_3:1224902-1224921 None:intergenic 15.0%
!!! TTCCTAATTTTCATTAATAT+AGG + chr5_3:1224902-1224921 Msa0790440:intron 15.0%
!! TTCCTATATTAATGAAAATT+AGG - chr5_3:1224907-1224926 None:intergenic 15.0%
!! ATTATTATTATTCCCAGATT+GGG - chr5_3:1222142-1222161 None:intergenic 20.0%
!! TATTATTATTATTCCCAGAT+TGG - chr5_3:1222143-1222162 None:intergenic 20.0%
!!! CTAAGATCAATTTTGAAAAA+TGG - chr5_3:1222875-1222894 None:intergenic 20.0%
!!! CATTTTTCAAAATTGATCTT+AGG + chr5_3:1222873-1222892 Msa0790440:intron 20.0%
!!! ATTTTCAATTTGGATTTCAA+TGG + chr5_3:1223273-1223292 Msa0790440:intron 20.0%
!! CAAAATCATTCAAATTTCAA+AGG - chr5_3:1223789-1223808 None:intergenic 20.0%
!! TTAATTATGAAAAAGACTTG+TGG - chr5_3:1223942-1223961 None:intergenic 20.0%
!!! ACTCTAAAGAACTATAAAAA+GGG + chr5_3:1224520-1224539 Msa0790440:intron 20.0%
!! TAAATAAACAAATGTAGTAG+TGG + chr5_3:1225666-1225685 Msa0790440:three_prime_UTR 20.0%
!! ATTATTATTATTCCCAGATT+GGG - chr5_3:1222142-1222161 None:intergenic 20.0%
!! TATTATTATTATTCCCAGAT+TGG - chr5_3:1222143-1222162 None:intergenic 20.0%
!!! CTAAGATCAATTTTGAAAAA+TGG - chr5_3:1222875-1222894 None:intergenic 20.0%
!!! CATTTTTCAAAATTGATCTT+AGG + chr5_3:1222873-1222892 Msa0790440:intron 20.0%
!!! ATTTTCAATTTGGATTTCAA+TGG + chr5_3:1223273-1223292 Msa0790440:intron 20.0%
!! CAAAATCATTCAAATTTCAA+AGG - chr5_3:1223789-1223808 None:intergenic 20.0%
!! TTAATTATGAAAAAGACTTG+TGG - chr5_3:1223942-1223961 None:intergenic 20.0%
!!! ACTCTAAAGAACTATAAAAA+GGG + chr5_3:1224520-1224539 Msa0790440:intron 20.0%
!! TAAATAAACAAATGTAGTAG+TGG + chr5_3:1225666-1225685 Msa0790440:three_prime_UTR 20.0%
! GAGAGAAATAACGATAAAAA+AGG - chr5_3:1221833-1221852 None:intergenic 25.0%
! ATTCTGAATGAATGAATGAA+TGG + chr5_3:1221992-1222011 Msa0790440:intron 25.0%
! TTATTATTATTCCCAGATTG+GGG - chr5_3:1222141-1222160 None:intergenic 25.0%
!! AATAAAATGATGGGAAAGTA+AGG - chr5_3:1222335-1222354 None:intergenic 25.0%
! ATTCACTCAAGCATTAAAAA+TGG + chr5_3:1222681-1222700 Msa0790440:intron 25.0%
!!! AAGCATATAGACTTGTTTTA+AGG - chr5_3:1222968-1222987 None:intergenic 25.0%
! CTTAACATATGTATTGGATT+AGG + chr5_3:1223155-1223174 Msa0790440:intron 25.0%
!!! CATGATTTTAAAAGACAATC+AGG + chr5_3:1223250-1223269 Msa0790440:intron 25.0%
! ATCACTTAAAAAAAGTCTCA+TGG - chr5_3:1223816-1223835 None:intergenic 25.0%
!!! GTCATTTTAAAAAAGTCTTG+AGG - chr5_3:1223858-1223877 None:intergenic 25.0%
! GCAATTTAAAAAAAGTCTTG+TGG - chr5_3:1223900-1223919 None:intergenic 25.0%
! AAAAAAACTATTGCATTGTG+AGG + chr5_3:1224041-1224060 Msa0790440:intron 25.0%
! GAAGATAAACAGATATGATT+CGG - chr5_3:1224316-1224335 None:intergenic 25.0%
!! CACTCTAAAGAACTATAAAA+AGG + chr5_3:1224519-1224538 Msa0790440:intron 25.0%
!! CTCTAAAGAACTATAAAAAG+GGG + chr5_3:1224521-1224540 Msa0790440:intron 25.0%
! TTCATTCCATTACTATTGAA+AGG - chr5_3:1225275-1225294 None:intergenic 25.0%
!! ACCATCTGATTTAGAATTTA+TGG + chr5_3:1225366-1225385 Msa0790440:three_prime_UTR 25.0%
! ACCATAAATTCTAAATCAGA+TGG - chr5_3:1225370-1225389 None:intergenic 25.0%
!! ATCTGATTTAGAATTTATGG+TGG + chr5_3:1225369-1225388 Msa0790440:three_prime_UTR 25.0%
! AACAAAACAGAGAAATTAAG+CGG - chr5_3:1225424-1225443 None:intergenic 25.0%
! TGTGTATATCTAAATATGCA+TGG + chr5_3:1225628-1225647 Msa0790440:three_prime_UTR 25.0%
! GAGAGAAATAACGATAAAAA+AGG - chr5_3:1221833-1221852 None:intergenic 25.0%
! ATTCTGAATGAATGAATGAA+TGG + chr5_3:1221992-1222011 Msa0790440:intron 25.0%
! TTATTATTATTCCCAGATTG+GGG - chr5_3:1222141-1222160 None:intergenic 25.0%
!! AATAAAATGATGGGAAAGTA+AGG - chr5_3:1222335-1222354 None:intergenic 25.0%
! ATTCACTCAAGCATTAAAAA+TGG + chr5_3:1222681-1222700 Msa0790440:intron 25.0%
!!! AAGCATATAGACTTGTTTTA+AGG - chr5_3:1222968-1222987 None:intergenic 25.0%
! CTTAACATATGTATTGGATT+AGG + chr5_3:1223155-1223174 Msa0790440:intron 25.0%
!!! CATGATTTTAAAAGACAATC+AGG + chr5_3:1223250-1223269 Msa0790440:intron 25.0%
! ATCACTTAAAAAAAGTCTCA+TGG - chr5_3:1223816-1223835 None:intergenic 25.0%
!!! GTCATTTTAAAAAAGTCTTG+AGG - chr5_3:1223858-1223877 None:intergenic 25.0%
! GCAATTTAAAAAAAGTCTTG+TGG - chr5_3:1223900-1223919 None:intergenic 25.0%
! AAAAAAACTATTGCATTGTG+AGG + chr5_3:1224041-1224060 Msa0790440:intron 25.0%
! GAAGATAAACAGATATGATT+CGG - chr5_3:1224316-1224335 None:intergenic 25.0%
!! CACTCTAAAGAACTATAAAA+AGG + chr5_3:1224519-1224538 Msa0790440:intron 25.0%
!! CTCTAAAGAACTATAAAAAG+GGG + chr5_3:1224521-1224540 Msa0790440:intron 25.0%
! TTCATTCCATTACTATTGAA+AGG - chr5_3:1225275-1225294 None:intergenic 25.0%
!! ACCATCTGATTTAGAATTTA+TGG + chr5_3:1225366-1225385 Msa0790440:three_prime_UTR 25.0%
! ACCATAAATTCTAAATCAGA+TGG - chr5_3:1225370-1225389 None:intergenic 25.0%
!! ATCTGATTTAGAATTTATGG+TGG + chr5_3:1225369-1225388 Msa0790440:three_prime_UTR 25.0%
! AACAAAACAGAGAAATTAAG+CGG - chr5_3:1225424-1225443 None:intergenic 25.0%
! TGTGTATATCTAAATATGCA+TGG + chr5_3:1225628-1225647 Msa0790440:three_prime_UTR 25.0%
TCCTACTTAGTACTTAACTA+GGG + chr5_3:1222027-1222046 Msa0790440:intron 30.0%
! TAGTACTTAACTAGGGTTTT+TGG + chr5_3:1222034-1222053 Msa0790440:intron 30.0%
TATTATTATTCCCAGATTGG+GGG - chr5_3:1222140-1222159 None:intergenic 30.0%
!!! CAAGTGTAACTTGTTTTTGT+AGG + chr5_3:1222765-1222784 Msa0790440:intron 30.0%
TTCAGAACTTAAGATCAAGA+AGG - chr5_3:1222910-1222929 None:intergenic 30.0%
! TAAATAGCTCTGTAATCCTA+CGG + chr5_3:1222990-1223009 Msa0790440:intron 30.0%
GAGTGTCTTAACATATGTAT+TGG + chr5_3:1223149-1223168 Msa0790440:intron 30.0%
!! GTATTGGATTAGGATTTTGA+AGG + chr5_3:1223165-1223184 Msa0790440:intron 30.0%
! GACAATCAGGATTTTCAATT+TGG + chr5_3:1223263-1223282 Msa0790440:intron 30.0%
! TTTTTATGAGAGATAGAGAG+AGG + chr5_3:1223441-1223460 Msa0790440:intron 30.0%
! TTTTATGAGAGATAGAGAGA+GGG + chr5_3:1223442-1223461 Msa0790440:intron 30.0%
! GTATTGGATTAGGATTCTAA+GGG - chr5_3:1223980-1223999 None:intergenic 30.0%
! TGTATTGGATTAGGATTCTA+AGG - chr5_3:1223981-1224000 None:intergenic 30.0%
!!! TAGTTTTTTTTTATCACGCC+TGG - chr5_3:1224031-1224050 None:intergenic 30.0%
TCACAACTTCTGTTTATAGA+CGG + chr5_3:1224095-1224114 Msa0790440:intron 30.0%
AATGGGAATATCCAAAGAAT+GGG + chr5_3:1224155-1224174 Msa0790440:CDS 30.0%
! TCACAGCAGTATAATTTTGT+TGG + chr5_3:1224371-1224390 Msa0790440:intron 30.0%
! TAATTTTGTTGGTCGAATTC+TGG + chr5_3:1224382-1224401 Msa0790440:CDS 30.0%
! AATTTTGTTGGTCGAATTCT+GGG + chr5_3:1224383-1224402 Msa0790440:CDS 30.0%
AGTTGTTACATCTTTCAACT+TGG + chr5_3:1224787-1224806 Msa0790440:intron 30.0%
AAATAAAAAAGCAGCAGGAT+GGG - chr5_3:1224830-1224849 None:intergenic 30.0%
ATGAGAAATAAAAAAGCAGC+AGG - chr5_3:1224835-1224854 None:intergenic 30.0%
GAAATACATCAGGAAAAATG+AGG - chr5_3:1224878-1224897 None:intergenic 30.0%
GTGAAAATAATCTATACCAC+AGG - chr5_3:1225065-1225084 None:intergenic 30.0%
TATGATCAATGGTACTTTGA+GGG + chr5_3:1225205-1225224 Msa0790440:CDS 30.0%
ATGTCACCTTTCAATAGTAA+TGG + chr5_3:1225266-1225285 Msa0790440:CDS 30.0%
AGATTGACTGTTAACATACT+GGG - chr5_3:1225321-1225340 None:intergenic 30.0%
AAGATTGACTGTTAACATAC+TGG - chr5_3:1225322-1225341 None:intergenic 30.0%
! AAACTAGAAGTATGCTACTA+GGG - chr5_3:1225537-1225556 None:intergenic 30.0%
TCCTACTTAGTACTTAACTA+GGG + chr5_3:1222027-1222046 Msa0790440:intron 30.0%
! TAGTACTTAACTAGGGTTTT+TGG + chr5_3:1222034-1222053 Msa0790440:intron 30.0%
TATTATTATTCCCAGATTGG+GGG - chr5_3:1222140-1222159 None:intergenic 30.0%
!!! CAAGTGTAACTTGTTTTTGT+AGG + chr5_3:1222765-1222784 Msa0790440:intron 30.0%
TTCAGAACTTAAGATCAAGA+AGG - chr5_3:1222910-1222929 None:intergenic 30.0%
! TAAATAGCTCTGTAATCCTA+CGG + chr5_3:1222990-1223009 Msa0790440:intron 30.0%
GAGTGTCTTAACATATGTAT+TGG + chr5_3:1223149-1223168 Msa0790440:intron 30.0%
!! GTATTGGATTAGGATTTTGA+AGG + chr5_3:1223165-1223184 Msa0790440:intron 30.0%
! GACAATCAGGATTTTCAATT+TGG + chr5_3:1223263-1223282 Msa0790440:intron 30.0%
! TTTTTATGAGAGATAGAGAG+AGG + chr5_3:1223441-1223460 Msa0790440:intron 30.0%
! TTTTATGAGAGATAGAGAGA+GGG + chr5_3:1223442-1223461 Msa0790440:intron 30.0%
! GTATTGGATTAGGATTCTAA+GGG - chr5_3:1223980-1223999 None:intergenic 30.0%
! TGTATTGGATTAGGATTCTA+AGG - chr5_3:1223981-1224000 None:intergenic 30.0%
!!! TAGTTTTTTTTTATCACGCC+TGG - chr5_3:1224031-1224050 None:intergenic 30.0%
TCACAACTTCTGTTTATAGA+CGG + chr5_3:1224095-1224114 Msa0790440:intron 30.0%
AATGGGAATATCCAAAGAAT+GGG + chr5_3:1224155-1224174 Msa0790440:CDS 30.0%
! TCACAGCAGTATAATTTTGT+TGG + chr5_3:1224371-1224390 Msa0790440:intron 30.0%
! TAATTTTGTTGGTCGAATTC+TGG + chr5_3:1224382-1224401 Msa0790440:CDS 30.0%
! AATTTTGTTGGTCGAATTCT+GGG + chr5_3:1224383-1224402 Msa0790440:CDS 30.0%
AGTTGTTACATCTTTCAACT+TGG + chr5_3:1224787-1224806 Msa0790440:intron 30.0%
AAATAAAAAAGCAGCAGGAT+GGG - chr5_3:1224830-1224849 None:intergenic 30.0%
ATGAGAAATAAAAAAGCAGC+AGG - chr5_3:1224835-1224854 None:intergenic 30.0%
GAAATACATCAGGAAAAATG+AGG - chr5_3:1224878-1224897 None:intergenic 30.0%
GTGAAAATAATCTATACCAC+AGG - chr5_3:1225065-1225084 None:intergenic 30.0%
TATGATCAATGGTACTTTGA+GGG + chr5_3:1225205-1225224 Msa0790440:CDS 30.0%
ATGTCACCTTTCAATAGTAA+TGG + chr5_3:1225266-1225285 Msa0790440:CDS 30.0%
AGATTGACTGTTAACATACT+GGG - chr5_3:1225321-1225340 None:intergenic 30.0%
AAGATTGACTGTTAACATAC+TGG - chr5_3:1225322-1225341 None:intergenic 30.0%
! AAACTAGAAGTATGCTACTA+GGG - chr5_3:1225537-1225556 None:intergenic 30.0%
GTCCTACTTAGTACTTAACT+AGG + chr5_3:1222026-1222045 Msa0790440:intron 35.0%
ACCCTAGTTAAGTACTAAGT+AGG - chr5_3:1222031-1222050 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr5_3:1222081-1222100 Msa0790440:intron 35.0%
AGAAGAAGAAGGATAGAAGA+TGG + chr5_3:1222104-1222123 Msa0790440:exon 35.0%
GAAGAAGAAGGATAGAAGAT+GGG + chr5_3:1222105-1222124 Msa0790440:exon 35.0%
! ATTAAAGTACCTTTCGCGAT+CGG - chr5_3:1222301-1222320 None:intergenic 35.0%
TGATTTCCTGAGTTAAGAGT+CGG - chr5_3:1222500-1222519 None:intergenic 35.0%
! ACTCTTCTACTACTCCTTTT+AGG + chr5_3:1222571-1222590 Msa0790440:CDS 35.0%
TTCATCACCAAAAAACATCC+AGG + chr5_3:1222792-1222811 Msa0790440:intron 35.0%
!!! CTAGTATCCTGGATGTTTTT+TGG - chr5_3:1222802-1222821 None:intergenic 35.0%
!! CTTAAGTTCTGAACAAGTCT+TGG + chr5_3:1222917-1222936 Msa0790440:intron 35.0%
GTAGGATTACAGAGCTATTT+AGG - chr5_3:1222991-1223010 None:intergenic 35.0%
TACAGGATCTTTATAGCACT+AGG - chr5_3:1223019-1223038 None:intergenic 35.0%
GTGCTATAAAGATCCTGTAA+TGG + chr5_3:1223020-1223039 Msa0790440:intron 35.0%
ATAAAGATCCTGTAATGGCA+AGG + chr5_3:1223025-1223044 Msa0790440:intron 35.0%
! AGCTATTTGTTGCTAGACTT+TGG + chr5_3:1223104-1223123 Msa0790440:intron 35.0%
TTTATGAGAGATAGAGAGAG+GGG + chr5_3:1223443-1223462 Msa0790440:intron 35.0%
TGCATTGTGAGGAAAATTGA+TGG + chr5_3:1224052-1224071 Msa0790440:intron 35.0%
CACAACTTCTGTTTATAGAC+GGG + chr5_3:1224096-1224115 Msa0790440:intron 35.0%
ACAACTTCTGTTTATAGACG+GGG + chr5_3:1224097-1224116 Msa0790440:intron 35.0%
CAATGGGAATATCCAAAGAA+TGG + chr5_3:1224154-1224173 Msa0790440:CDS 35.0%
CTGATAACTCTCTTCACTAT+AGG - chr5_3:1224236-1224255 None:intergenic 35.0%
CTATAGTGAAGAGAGTTATC+AGG + chr5_3:1224234-1224253 Msa0790440:CDS 35.0%
CATTTGGATATTTGTCGACA+GGG - chr5_3:1224268-1224287 None:intergenic 35.0%
ACATTTGGATATTTGTCGAC+AGG - chr5_3:1224269-1224288 None:intergenic 35.0%
! TGATTCGGAGTGAAAAAACA+CGG - chr5_3:1224301-1224320 None:intergenic 35.0%
CTACAATGGTAAGAGCTTTA+TGG - chr5_3:1224556-1224575 None:intergenic 35.0%
TGTAGCAATTGCAAGGTAAA+AGG - chr5_3:1224614-1224633 None:intergenic 35.0%
ACCTTGCAATTGCTACATTT+AGG + chr5_3:1224617-1224636 Msa0790440:intron 35.0%
ACCTAAATGTAGCAATTGCA+AGG - chr5_3:1224621-1224640 None:intergenic 35.0%
TATCACTTTGTGCAAGTCAA+TGG - chr5_3:1224705-1224724 None:intergenic 35.0%
AATAAAAAAGCAGCAGGATG+GGG - chr5_3:1224829-1224848 None:intergenic 35.0%
GAAATAAAAAAGCAGCAGGA+TGG - chr5_3:1224831-1224850 None:intergenic 35.0%
ATACATCAGGAAAAATGAGG+CGG - chr5_3:1224875-1224894 None:intergenic 35.0%
TAGGAAAGGTGAAATACATC+AGG - chr5_3:1224888-1224907 None:intergenic 35.0%
GAGAAGCTTAAAGATAAACC+TGG + chr5_3:1224927-1224946 Msa0790440:CDS 35.0%
!!! AGAAAATCTTTTGAAGCCTG+TGG + chr5_3:1225046-1225065 Msa0790440:CDS 35.0%
! GAAAGACTAGCCCTAAAAAA+GGG - chr5_3:1225117-1225136 None:intergenic 35.0%
! AGAAAGACTAGCCCTAAAAA+AGG - chr5_3:1225118-1225137 None:intergenic 35.0%
CTATGATCAATGGTACTTTG+AGG + chr5_3:1225204-1225223 Msa0790440:CDS 35.0%
ACATACTTGGACTCATACTA+GGG - chr5_3:1225250-1225269 None:intergenic 35.0%
CTATTGAAAGGTGACATACT+TGG - chr5_3:1225263-1225282 None:intergenic 35.0%
GATTGACTGTTAACATACTG+GGG - chr5_3:1225320-1225339 None:intergenic 35.0%
! AGATGGTCATAATCTAGCTT+GGG - chr5_3:1225353-1225372 None:intergenic 35.0%
TACGACAGTCAATATTCTAG+CGG - chr5_3:1225473-1225492 None:intergenic 35.0%
GTACAGTCTTAACTAAGTTG+CGG + chr5_3:1225506-1225525 Msa0790440:three_prime_UTR 35.0%
! CAAACTAGAAGTATGCTACT+AGG - chr5_3:1225538-1225557 None:intergenic 35.0%
!!! ATCGTGGTAGTTTTATGTAC+CGG + chr5_3:1225778-1225797 Msa0790440:three_prime_UTR 35.0%
GTCCTACTTAGTACTTAACT+AGG + chr5_3:1222026-1222045 Msa0790440:intron 35.0%
ACCCTAGTTAAGTACTAAGT+AGG - chr5_3:1222031-1222050 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr5_3:1222081-1222100 Msa0790440:intron 35.0%
AGAAGAAGAAGGATAGAAGA+TGG + chr5_3:1222104-1222123 Msa0790440:exon 35.0%
GAAGAAGAAGGATAGAAGAT+GGG + chr5_3:1222105-1222124 Msa0790440:exon 35.0%
! ATTAAAGTACCTTTCGCGAT+CGG - chr5_3:1222301-1222320 None:intergenic 35.0%
TGATTTCCTGAGTTAAGAGT+CGG - chr5_3:1222500-1222519 None:intergenic 35.0%
! ACTCTTCTACTACTCCTTTT+AGG + chr5_3:1222571-1222590 Msa0790440:CDS 35.0%
TTCATCACCAAAAAACATCC+AGG + chr5_3:1222792-1222811 Msa0790440:intron 35.0%
!!! CTAGTATCCTGGATGTTTTT+TGG - chr5_3:1222802-1222821 None:intergenic 35.0%
!! CTTAAGTTCTGAACAAGTCT+TGG + chr5_3:1222917-1222936 Msa0790440:intron 35.0%
GTAGGATTACAGAGCTATTT+AGG - chr5_3:1222991-1223010 None:intergenic 35.0%
TACAGGATCTTTATAGCACT+AGG - chr5_3:1223019-1223038 None:intergenic 35.0%
GTGCTATAAAGATCCTGTAA+TGG + chr5_3:1223020-1223039 Msa0790440:intron 35.0%
ATAAAGATCCTGTAATGGCA+AGG + chr5_3:1223025-1223044 Msa0790440:intron 35.0%
! AGCTATTTGTTGCTAGACTT+TGG + chr5_3:1223104-1223123 Msa0790440:intron 35.0%
TTTATGAGAGATAGAGAGAG+GGG + chr5_3:1223443-1223462 Msa0790440:intron 35.0%
TGCATTGTGAGGAAAATTGA+TGG + chr5_3:1224052-1224071 Msa0790440:intron 35.0%
CACAACTTCTGTTTATAGAC+GGG + chr5_3:1224096-1224115 Msa0790440:intron 35.0%
ACAACTTCTGTTTATAGACG+GGG + chr5_3:1224097-1224116 Msa0790440:intron 35.0%
CAATGGGAATATCCAAAGAA+TGG + chr5_3:1224154-1224173 Msa0790440:CDS 35.0%
CTGATAACTCTCTTCACTAT+AGG - chr5_3:1224236-1224255 None:intergenic 35.0%
CTATAGTGAAGAGAGTTATC+AGG + chr5_3:1224234-1224253 Msa0790440:CDS 35.0%
CATTTGGATATTTGTCGACA+GGG - chr5_3:1224268-1224287 None:intergenic 35.0%
ACATTTGGATATTTGTCGAC+AGG - chr5_3:1224269-1224288 None:intergenic 35.0%
! TGATTCGGAGTGAAAAAACA+CGG - chr5_3:1224301-1224320 None:intergenic 35.0%
CTACAATGGTAAGAGCTTTA+TGG - chr5_3:1224556-1224575 None:intergenic 35.0%
TGTAGCAATTGCAAGGTAAA+AGG - chr5_3:1224614-1224633 None:intergenic 35.0%
ACCTTGCAATTGCTACATTT+AGG + chr5_3:1224617-1224636 Msa0790440:intron 35.0%
ACCTAAATGTAGCAATTGCA+AGG - chr5_3:1224621-1224640 None:intergenic 35.0%
TATCACTTTGTGCAAGTCAA+TGG - chr5_3:1224705-1224724 None:intergenic 35.0%
AATAAAAAAGCAGCAGGATG+GGG - chr5_3:1224829-1224848 None:intergenic 35.0%
GAAATAAAAAAGCAGCAGGA+TGG - chr5_3:1224831-1224850 None:intergenic 35.0%
ATACATCAGGAAAAATGAGG+CGG - chr5_3:1224875-1224894 None:intergenic 35.0%
TAGGAAAGGTGAAATACATC+AGG - chr5_3:1224888-1224907 None:intergenic 35.0%
GAGAAGCTTAAAGATAAACC+TGG + chr5_3:1224927-1224946 Msa0790440:CDS 35.0%
!!! AGAAAATCTTTTGAAGCCTG+TGG + chr5_3:1225046-1225065 Msa0790440:CDS 35.0%
! GAAAGACTAGCCCTAAAAAA+GGG - chr5_3:1225117-1225136 None:intergenic 35.0%
! AGAAAGACTAGCCCTAAAAA+AGG - chr5_3:1225118-1225137 None:intergenic 35.0%
CTATGATCAATGGTACTTTG+AGG + chr5_3:1225204-1225223 Msa0790440:CDS 35.0%
ACATACTTGGACTCATACTA+GGG - chr5_3:1225250-1225269 None:intergenic 35.0%
CTATTGAAAGGTGACATACT+TGG - chr5_3:1225263-1225282 None:intergenic 35.0%
GATTGACTGTTAACATACTG+GGG - chr5_3:1225320-1225339 None:intergenic 35.0%
! AGATGGTCATAATCTAGCTT+GGG - chr5_3:1225353-1225372 None:intergenic 35.0%
TACGACAGTCAATATTCTAG+CGG - chr5_3:1225473-1225492 None:intergenic 35.0%
GTACAGTCTTAACTAAGTTG+CGG + chr5_3:1225506-1225525 Msa0790440:three_prime_UTR 35.0%
! CAAACTAGAAGTATGCTACT+AGG - chr5_3:1225538-1225557 None:intergenic 35.0%
!!! ATCGTGGTAGTTTTATGTAC+CGG + chr5_3:1225778-1225797 Msa0790440:three_prime_UTR 35.0%
CAAGGATCGAATTCGAACAA+AGG - chr5_3:1221898-1221917 None:intergenic 40.0%
! AATGATGGGAAAGTAAGGAG+AGG - chr5_3:1222330-1222349 None:intergenic 40.0%
TAGATATTTGGCCGAACTCT+TGG + chr5_3:1222425-1222444 Msa0790440:intron 40.0%
TTGGCTGAGAGACAAAAGTT+GGG + chr5_3:1222444-1222463 Msa0790440:CDS 40.0%
TGTGGGAGAACTTGCAAAAA+GGG - chr5_3:1222471-1222490 None:intergenic 40.0%
TTGTGGGAGAACTTGCAAAA+AGG - chr5_3:1222472-1222491 None:intergenic 40.0%
TTAAGAGTCGGGTAGATTGT+GGG - chr5_3:1222488-1222507 None:intergenic 40.0%
GATTTCCTGAGTTAAGAGTC+GGG - chr5_3:1222499-1222518 None:intergenic 40.0%
GAAATCAGACGTATCTCATC+CGG + chr5_3:1222513-1222532 Msa0790440:CDS 40.0%
ATGTTCCATAATAAAGCCGC+TGG - chr5_3:1222541-1222560 None:intergenic 40.0%
AAAGGAGTAGTAGAAGAGTC+AGG - chr5_3:1222570-1222589 None:intergenic 40.0%
TGATAGGATGTTGAGGTAAG+GGG - chr5_3:1222599-1222618 None:intergenic 40.0%
GTGATAGGATGTTGAGGTAA+GGG - chr5_3:1222600-1222619 None:intergenic 40.0%
CAATGCATTACCTCTCTATG+GGG - chr5_3:1222645-1222664 None:intergenic 40.0%
GCAATGCATTACCTCTCTAT+GGG - chr5_3:1222646-1222665 None:intergenic 40.0%
TGCAATGCATTACCTCTCTA+TGG - chr5_3:1222647-1222666 None:intergenic 40.0%
ACAGCATACTTCTAGTATCC+TGG - chr5_3:1222813-1222832 None:intergenic 40.0%
GAACTTAAGATCAAGAAGGC+AGG - chr5_3:1222906-1222925 None:intergenic 40.0%
!! AAGTTCTGAACAAGTCTTGG+AGG + chr5_3:1222920-1222939 Msa0790440:intron 40.0%
TTATAGCACTAGGTTTCCGT+AGG - chr5_3:1223009-1223028 None:intergenic 40.0%
! AAATAGACCCACAATGGGTT+TGG - chr5_3:1223062-1223081 None:intergenic 40.0%
! ACCCATTGTGGGTCTATTTT+AGG + chr5_3:1223063-1223082 Msa0790440:intron 40.0%
GCCTAAAATAGACCCACAAT+GGG - chr5_3:1223067-1223086 None:intergenic 40.0%
TGCCTAAAATAGACCCACAA+TGG - chr5_3:1223068-1223087 None:intergenic 40.0%
!! TTGCTAGACTTTGGCTCTTT+GGG + chr5_3:1223113-1223132 Msa0790440:intron 40.0%
TTATGAGAGATAGAGAGAGG+GGG + chr5_3:1223444-1223463 Msa0790440:intron 40.0%
AAAAGAGATGAGAGAGGGAA+GGG + chr5_3:1223607-1223626 Msa0790440:intron 40.0%
GGAGAAGAGAGAAGGAATAA+GGG + chr5_3:1223628-1223647 Msa0790440:intron 40.0%
ATATTGCCCATGTGTGAGAA+GGG - chr5_3:1224007-1224026 None:intergenic 40.0%
TATATTGCCCATGTGTGAGA+AGG - chr5_3:1224008-1224027 None:intergenic 40.0%
! AGGAAAATTGATGGCAAGAG+AGG + chr5_3:1224061-1224080 Msa0790440:intron 40.0%
AATACCAATGTTCCCTATGC+AGG + chr5_3:1224130-1224149 Msa0790440:intron 40.0%
TATTCCCATTGTCCTGCATA+GGG - chr5_3:1224145-1224164 None:intergenic 40.0%
ATATTCCCATTGTCCTGCAT+AGG - chr5_3:1224146-1224165 None:intergenic 40.0%
CTTGAAAGGATCCCATTCTT+TGG - chr5_3:1224169-1224188 None:intergenic 40.0%
! ACACGGTTTGGACTTACATT+TGG - chr5_3:1224284-1224303 None:intergenic 40.0%
GTAAACCCTACATTCTGTCA+TGG - chr5_3:1224441-1224460 None:intergenic 40.0%
GAATGTAGGGTTTACATCAG+AGG + chr5_3:1224446-1224465 Msa0790440:CDS 40.0%
CTCTGTGAAGGATTCGATTA+AGG + chr5_3:1224475-1224494 Msa0790440:CDS 40.0%
!! TTCCGTGGTGGATTTATTGT+TGG + chr5_3:1224586-1224605 Msa0790440:intron 40.0%
TGCCAACAATAAATCCACCA+CGG - chr5_3:1224591-1224610 None:intergenic 40.0%
!! TCTTTAAGGTGCTCATAACC+AGG - chr5_3:1224948-1224967 None:intergenic 40.0%
ACAAGTGCAATGGCTCTTTA+AGG - chr5_3:1224962-1224981 None:intergenic 40.0%
TAAAGAGCCATTGCACTTGT+TGG + chr5_3:1224962-1224981 Msa0790440:CDS 40.0%
CGGGAATTGATTATATCCTC+AGG - chr5_3:1225002-1225021 None:intergenic 40.0%
GGATATAATCAATTCCCGCT+TGG + chr5_3:1225004-1225023 Msa0790440:CDS 40.0%
! CTTTCTAACACTTGGTAACC+TGG + chr5_3:1225132-1225151 Msa0790440:intron 40.0%
ACTACAAGAAGCAGCAATTG+AGG + chr5_3:1225174-1225193 Msa0790440:CDS 40.0%
CTACAAGAAGCAGCAATTGA+GGG + chr5_3:1225175-1225194 Msa0790440:CDS 40.0%
AGGGAGTTAGCTATGATCAA+TGG + chr5_3:1225194-1225213 Msa0790440:CDS 40.0%
GACATACTTGGACTCATACT+AGG - chr5_3:1225251-1225270 None:intergenic 40.0%
CAGATGGTCATAATCTAGCT+TGG - chr5_3:1225354-1225373 None:intergenic 40.0%
GGTACATAAAACTACCACGA+TGG - chr5_3:1225779-1225798 None:intergenic 40.0%
CAAGGATCGAATTCGAACAA+AGG - chr5_3:1221898-1221917 None:intergenic 40.0%
! AATGATGGGAAAGTAAGGAG+AGG - chr5_3:1222330-1222349 None:intergenic 40.0%
TAGATATTTGGCCGAACTCT+TGG + chr5_3:1222425-1222444 Msa0790440:intron 40.0%
TTGGCTGAGAGACAAAAGTT+GGG + chr5_3:1222444-1222463 Msa0790440:CDS 40.0%
TGTGGGAGAACTTGCAAAAA+GGG - chr5_3:1222471-1222490 None:intergenic 40.0%
TTGTGGGAGAACTTGCAAAA+AGG - chr5_3:1222472-1222491 None:intergenic 40.0%
TTAAGAGTCGGGTAGATTGT+GGG - chr5_3:1222488-1222507 None:intergenic 40.0%
GATTTCCTGAGTTAAGAGTC+GGG - chr5_3:1222499-1222518 None:intergenic 40.0%
GAAATCAGACGTATCTCATC+CGG + chr5_3:1222513-1222532 Msa0790440:CDS 40.0%
ATGTTCCATAATAAAGCCGC+TGG - chr5_3:1222541-1222560 None:intergenic 40.0%
AAAGGAGTAGTAGAAGAGTC+AGG - chr5_3:1222570-1222589 None:intergenic 40.0%
TGATAGGATGTTGAGGTAAG+GGG - chr5_3:1222599-1222618 None:intergenic 40.0%
GTGATAGGATGTTGAGGTAA+GGG - chr5_3:1222600-1222619 None:intergenic 40.0%
CAATGCATTACCTCTCTATG+GGG - chr5_3:1222645-1222664 None:intergenic 40.0%
GCAATGCATTACCTCTCTAT+GGG - chr5_3:1222646-1222665 None:intergenic 40.0%
TGCAATGCATTACCTCTCTA+TGG - chr5_3:1222647-1222666 None:intergenic 40.0%
ACAGCATACTTCTAGTATCC+TGG - chr5_3:1222813-1222832 None:intergenic 40.0%
GAACTTAAGATCAAGAAGGC+AGG - chr5_3:1222906-1222925 None:intergenic 40.0%
!! AAGTTCTGAACAAGTCTTGG+AGG + chr5_3:1222920-1222939 Msa0790440:intron 40.0%
TTATAGCACTAGGTTTCCGT+AGG - chr5_3:1223009-1223028 None:intergenic 40.0%
! AAATAGACCCACAATGGGTT+TGG - chr5_3:1223062-1223081 None:intergenic 40.0%
! ACCCATTGTGGGTCTATTTT+AGG + chr5_3:1223063-1223082 Msa0790440:intron 40.0%
GCCTAAAATAGACCCACAAT+GGG - chr5_3:1223067-1223086 None:intergenic 40.0%
TGCCTAAAATAGACCCACAA+TGG - chr5_3:1223068-1223087 None:intergenic 40.0%
!! TTGCTAGACTTTGGCTCTTT+GGG + chr5_3:1223113-1223132 Msa0790440:intron 40.0%
TTATGAGAGATAGAGAGAGG+GGG + chr5_3:1223444-1223463 Msa0790440:intron 40.0%
AAAAGAGATGAGAGAGGGAA+GGG + chr5_3:1223607-1223626 Msa0790440:intron 40.0%
GGAGAAGAGAGAAGGAATAA+GGG + chr5_3:1223628-1223647 Msa0790440:intron 40.0%
ATATTGCCCATGTGTGAGAA+GGG - chr5_3:1224007-1224026 None:intergenic 40.0%
TATATTGCCCATGTGTGAGA+AGG - chr5_3:1224008-1224027 None:intergenic 40.0%
! AGGAAAATTGATGGCAAGAG+AGG + chr5_3:1224061-1224080 Msa0790440:intron 40.0%
AATACCAATGTTCCCTATGC+AGG + chr5_3:1224130-1224149 Msa0790440:intron 40.0%
TATTCCCATTGTCCTGCATA+GGG - chr5_3:1224145-1224164 None:intergenic 40.0%
ATATTCCCATTGTCCTGCAT+AGG - chr5_3:1224146-1224165 None:intergenic 40.0%
CTTGAAAGGATCCCATTCTT+TGG - chr5_3:1224169-1224188 None:intergenic 40.0%
! ACACGGTTTGGACTTACATT+TGG - chr5_3:1224284-1224303 None:intergenic 40.0%
GTAAACCCTACATTCTGTCA+TGG - chr5_3:1224441-1224460 None:intergenic 40.0%
GAATGTAGGGTTTACATCAG+AGG + chr5_3:1224446-1224465 Msa0790440:CDS 40.0%
CTCTGTGAAGGATTCGATTA+AGG + chr5_3:1224475-1224494 Msa0790440:CDS 40.0%
!! TTCCGTGGTGGATTTATTGT+TGG + chr5_3:1224586-1224605 Msa0790440:intron 40.0%
TGCCAACAATAAATCCACCA+CGG - chr5_3:1224591-1224610 None:intergenic 40.0%
!! TCTTTAAGGTGCTCATAACC+AGG - chr5_3:1224948-1224967 None:intergenic 40.0%
ACAAGTGCAATGGCTCTTTA+AGG - chr5_3:1224962-1224981 None:intergenic 40.0%
TAAAGAGCCATTGCACTTGT+TGG + chr5_3:1224962-1224981 Msa0790440:CDS 40.0%
CGGGAATTGATTATATCCTC+AGG - chr5_3:1225002-1225021 None:intergenic 40.0%
GGATATAATCAATTCCCGCT+TGG + chr5_3:1225004-1225023 Msa0790440:CDS 40.0%
! CTTTCTAACACTTGGTAACC+TGG + chr5_3:1225132-1225151 Msa0790440:intron 40.0%
ACTACAAGAAGCAGCAATTG+AGG + chr5_3:1225174-1225193 Msa0790440:CDS 40.0%
CTACAAGAAGCAGCAATTGA+GGG + chr5_3:1225175-1225194 Msa0790440:CDS 40.0%
AGGGAGTTAGCTATGATCAA+TGG + chr5_3:1225194-1225213 Msa0790440:CDS 40.0%
GACATACTTGGACTCATACT+AGG - chr5_3:1225251-1225270 None:intergenic 40.0%
CAGATGGTCATAATCTAGCT+TGG - chr5_3:1225354-1225373 None:intergenic 40.0%
GGTACATAAAACTACCACGA+TGG - chr5_3:1225779-1225798 None:intergenic 40.0%
GAAGAGAAGTGAGTGAGTGA+AGG - chr5_3:1221789-1221808 None:intergenic 45.0%
ATGAATGAATGGTGTGTGCG+TGG + chr5_3:1222003-1222022 Msa0790440:intron 45.0%
TGAATGAATGGTGTGTGCGT+GGG + chr5_3:1222004-1222023 Msa0790440:intron 45.0%
AAGGATAGAAGATGGGAGAG+TGG + chr5_3:1222112-1222131 Msa0790440:exon 45.0%
AGAACCTGATAGGAGAAGGA+GGG - chr5_3:1222278-1222297 None:intergenic 45.0%
TTGTCTCTCAGCCAAGAGTT+CGG - chr5_3:1222439-1222458 None:intergenic 45.0%
CTTGGCTGAGAGACAAAAGT+TGG + chr5_3:1222443-1222462 Msa0790440:CDS 45.0%
GTTAAGAGTCGGGTAGATTG+TGG - chr5_3:1222489-1222508 None:intergenic 45.0%
ATCTACCCGACTCTTAACTC+AGG + chr5_3:1222491-1222510 Msa0790440:CDS 45.0%
GAGTAGTAGAAGAGTCAGGA+TGG - chr5_3:1222566-1222585 None:intergenic 45.0%
ATAGGATGTTGAGGTAAGGG+GGG - chr5_3:1222597-1222616 None:intergenic 45.0%
GATAGGATGTTGAGGTAAGG+GGG - chr5_3:1222598-1222617 None:intergenic 45.0%
GGTGATAGGATGTTGAGGTA+AGG - chr5_3:1222601-1222620 None:intergenic 45.0%
TACCTCAACATCCTATCACC+AGG + chr5_3:1222601-1222620 Msa0790440:CDS 45.0%
AAATCCATAGGCCTGGTGAT+AGG - chr5_3:1222615-1222634 None:intergenic 45.0%
TGCATCACTGCTTCGTATAC+GGG - chr5_3:1222707-1222726 None:intergenic 45.0%
CTGCATCACTGCTTCGTATA+CGG - chr5_3:1222708-1222727 None:intergenic 45.0%
GTGTTGCGCTTAGAAGAACT+AGG + chr5_3:1222831-1222850 Msa0790440:intron 45.0%
TTTCGTGACCTTGCCATTAC+AGG - chr5_3:1223036-1223055 None:intergenic 45.0%
TGTAATGGCAAGGTCACGAA+AGG + chr5_3:1223035-1223054 Msa0790440:intron 45.0%
GTAATGGCAAGGTCACGAAA+GGG + chr5_3:1223036-1223055 Msa0790440:intron 45.0%
!! GTTGCTAGACTTTGGCTCTT+TGG + chr5_3:1223112-1223131 Msa0790440:intron 45.0%
!! TGCTAGACTTTGGCTCTTTG+GGG + chr5_3:1223114-1223133 Msa0790440:intron 45.0%
GGAGAGAAGGGAGAAAATAG+AGG + chr5_3:1223477-1223496 Msa0790440:intron 45.0%
AAGAGAGAGACGAAGAGAGA+AGG + chr5_3:1223566-1223585 Msa0790440:intron 45.0%
AGAGAGAGACGAAGAGAGAA+GGG + chr5_3:1223567-1223586 Msa0790440:intron 45.0%
AGGGAGAAAAGAGATGAGAG+AGG + chr5_3:1223601-1223620 Msa0790440:intron 45.0%
GGGAGAAAAGAGATGAGAGA+GGG + chr5_3:1223602-1223621 Msa0790440:intron 45.0%
GAAAAGAGATGAGAGAGGGA+AGG + chr5_3:1223606-1223625 Msa0790440:intron 45.0%
GGGAGAAGAGAGAAGGAATA+AGG + chr5_3:1223627-1223646 Msa0790440:intron 45.0%
GAAGGGGGATGTATTGGATT+AGG - chr5_3:1223990-1224009 None:intergenic 45.0%
TATTGCCCATGTGTGAGAAG+GGG - chr5_3:1224006-1224025 None:intergenic 45.0%
TCACACATGGGCAATATACC+AGG + chr5_3:1224010-1224029 Msa0790440:intron 45.0%
TTGTCCTGCATAGGGAACAT+TGG - chr5_3:1224137-1224156 None:intergenic 45.0%
ATGTTCCCTATGCAGGACAA+TGG + chr5_3:1224137-1224156 Msa0790440:intron 45.0%
TGTTCCCTATGCAGGACAAT+GGG + chr5_3:1224138-1224157 Msa0790440:intron 45.0%
ATCCTTTCAAGCATCTCCAG+TGG + chr5_3:1224178-1224197 Msa0790440:CDS 45.0%
TCCTTTCAAGCATCTCCAGT+GGG + chr5_3:1224179-1224198 Msa0790440:CDS 45.0%
CTCTTCACTATAGGAGTCGT+CGG - chr5_3:1224227-1224246 None:intergenic 45.0%
CGGAGTGAAAAAACACGGTT+TGG - chr5_3:1224296-1224315 None:intergenic 45.0%
TGGAAGCCATGACAGAATGT+AGG + chr5_3:1224432-1224451 Msa0790440:CDS 45.0%
GGAAGCCATGACAGAATGTA+GGG + chr5_3:1224433-1224452 Msa0790440:CDS 45.0%
GGAACTGAAGGACACTACAA+TGG - chr5_3:1224570-1224589 None:intergenic 45.0%
TAAATCCACCACGGAACTGA+AGG - chr5_3:1224582-1224601 None:intergenic 45.0%
! TTTCTAGTACTGCCACAGCA+TGG - chr5_3:1225031-1225050 None:intergenic 45.0%
!!! ACTGCACCTCTCCCTTTTTT+AGG + chr5_3:1225103-1225122 Msa0790440:intron 45.0%
!!! CTGCACCTCTCCCTTTTTTA+GGG + chr5_3:1225104-1225123 Msa0790440:intron 45.0%
ACTAGCCCTAAAAAAGGGAG+AGG - chr5_3:1225112-1225131 None:intergenic 45.0%
!! GGGCTAGTCTTTCTAACACT+TGG + chr5_3:1225124-1225143 Msa0790440:intron 45.0%
ATCAAGTGATTCATCCTGCC+AGG - chr5_3:1225153-1225172 None:intergenic 45.0%
! GATCAATGGTACTTTGAGGG+AGG + chr5_3:1225208-1225227 Msa0790440:CDS 45.0%
ATTTATGGTGGCCTTTCTGC+AGG + chr5_3:1225381-1225400 Msa0790440:three_prime_UTR 45.0%
TTTATGGTGGCCTTTCTGCA+GGG + chr5_3:1225382-1225401 Msa0790440:three_prime_UTR 45.0%
GAAGAGAAGTGAGTGAGTGA+AGG - chr5_3:1221789-1221808 None:intergenic 45.0%
ATGAATGAATGGTGTGTGCG+TGG + chr5_3:1222003-1222022 Msa0790440:intron 45.0%
TGAATGAATGGTGTGTGCGT+GGG + chr5_3:1222004-1222023 Msa0790440:intron 45.0%
AAGGATAGAAGATGGGAGAG+TGG + chr5_3:1222112-1222131 Msa0790440:exon 45.0%
AGAACCTGATAGGAGAAGGA+GGG - chr5_3:1222278-1222297 None:intergenic 45.0%
TTGTCTCTCAGCCAAGAGTT+CGG - chr5_3:1222439-1222458 None:intergenic 45.0%
CTTGGCTGAGAGACAAAAGT+TGG + chr5_3:1222443-1222462 Msa0790440:CDS 45.0%
GTTAAGAGTCGGGTAGATTG+TGG - chr5_3:1222489-1222508 None:intergenic 45.0%
ATCTACCCGACTCTTAACTC+AGG + chr5_3:1222491-1222510 Msa0790440:CDS 45.0%
GAGTAGTAGAAGAGTCAGGA+TGG - chr5_3:1222566-1222585 None:intergenic 45.0%
ATAGGATGTTGAGGTAAGGG+GGG - chr5_3:1222597-1222616 None:intergenic 45.0%
GATAGGATGTTGAGGTAAGG+GGG - chr5_3:1222598-1222617 None:intergenic 45.0%
GGTGATAGGATGTTGAGGTA+AGG - chr5_3:1222601-1222620 None:intergenic 45.0%
TACCTCAACATCCTATCACC+AGG + chr5_3:1222601-1222620 Msa0790440:CDS 45.0%
AAATCCATAGGCCTGGTGAT+AGG - chr5_3:1222615-1222634 None:intergenic 45.0%
TGCATCACTGCTTCGTATAC+GGG - chr5_3:1222707-1222726 None:intergenic 45.0%
CTGCATCACTGCTTCGTATA+CGG - chr5_3:1222708-1222727 None:intergenic 45.0%
GTGTTGCGCTTAGAAGAACT+AGG + chr5_3:1222831-1222850 Msa0790440:intron 45.0%
TTTCGTGACCTTGCCATTAC+AGG - chr5_3:1223036-1223055 None:intergenic 45.0%
TGTAATGGCAAGGTCACGAA+AGG + chr5_3:1223035-1223054 Msa0790440:intron 45.0%
GTAATGGCAAGGTCACGAAA+GGG + chr5_3:1223036-1223055 Msa0790440:intron 45.0%
!! GTTGCTAGACTTTGGCTCTT+TGG + chr5_3:1223112-1223131 Msa0790440:intron 45.0%
!! TGCTAGACTTTGGCTCTTTG+GGG + chr5_3:1223114-1223133 Msa0790440:intron 45.0%
GGAGAGAAGGGAGAAAATAG+AGG + chr5_3:1223477-1223496 Msa0790440:intron 45.0%
AAGAGAGAGACGAAGAGAGA+AGG + chr5_3:1223566-1223585 Msa0790440:intron 45.0%
AGAGAGAGACGAAGAGAGAA+GGG + chr5_3:1223567-1223586 Msa0790440:intron 45.0%
AGGGAGAAAAGAGATGAGAG+AGG + chr5_3:1223601-1223620 Msa0790440:intron 45.0%
GGGAGAAAAGAGATGAGAGA+GGG + chr5_3:1223602-1223621 Msa0790440:intron 45.0%
GAAAAGAGATGAGAGAGGGA+AGG + chr5_3:1223606-1223625 Msa0790440:intron 45.0%
GGGAGAAGAGAGAAGGAATA+AGG + chr5_3:1223627-1223646 Msa0790440:intron 45.0%
GAAGGGGGATGTATTGGATT+AGG - chr5_3:1223990-1224009 None:intergenic 45.0%
TATTGCCCATGTGTGAGAAG+GGG - chr5_3:1224006-1224025 None:intergenic 45.0%
TCACACATGGGCAATATACC+AGG + chr5_3:1224010-1224029 Msa0790440:intron 45.0%
TTGTCCTGCATAGGGAACAT+TGG - chr5_3:1224137-1224156 None:intergenic 45.0%
ATGTTCCCTATGCAGGACAA+TGG + chr5_3:1224137-1224156 Msa0790440:intron 45.0%
TGTTCCCTATGCAGGACAAT+GGG + chr5_3:1224138-1224157 Msa0790440:intron 45.0%
ATCCTTTCAAGCATCTCCAG+TGG + chr5_3:1224178-1224197 Msa0790440:CDS 45.0%
TCCTTTCAAGCATCTCCAGT+GGG + chr5_3:1224179-1224198 Msa0790440:CDS 45.0%
CTCTTCACTATAGGAGTCGT+CGG - chr5_3:1224227-1224246 None:intergenic 45.0%
CGGAGTGAAAAAACACGGTT+TGG - chr5_3:1224296-1224315 None:intergenic 45.0%
TGGAAGCCATGACAGAATGT+AGG + chr5_3:1224432-1224451 Msa0790440:CDS 45.0%
GGAAGCCATGACAGAATGTA+GGG + chr5_3:1224433-1224452 Msa0790440:CDS 45.0%
GGAACTGAAGGACACTACAA+TGG - chr5_3:1224570-1224589 None:intergenic 45.0%
TAAATCCACCACGGAACTGA+AGG - chr5_3:1224582-1224601 None:intergenic 45.0%
! TTTCTAGTACTGCCACAGCA+TGG - chr5_3:1225031-1225050 None:intergenic 45.0%
!!! ACTGCACCTCTCCCTTTTTT+AGG + chr5_3:1225103-1225122 Msa0790440:intron 45.0%
!!! CTGCACCTCTCCCTTTTTTA+GGG + chr5_3:1225104-1225123 Msa0790440:intron 45.0%
ACTAGCCCTAAAAAAGGGAG+AGG - chr5_3:1225112-1225131 None:intergenic 45.0%
!! GGGCTAGTCTTTCTAACACT+TGG + chr5_3:1225124-1225143 Msa0790440:intron 45.0%
ATCAAGTGATTCATCCTGCC+AGG - chr5_3:1225153-1225172 None:intergenic 45.0%
! GATCAATGGTACTTTGAGGG+AGG + chr5_3:1225208-1225227 Msa0790440:CDS 45.0%
ATTTATGGTGGCCTTTCTGC+AGG + chr5_3:1225381-1225400 Msa0790440:three_prime_UTR 45.0%
TTTATGGTGGCCTTTCTGCA+GGG + chr5_3:1225382-1225401 Msa0790440:three_prime_UTR 45.0%
!! TTATTATTATTTATTAAACA+AGG - chr5_3:1221916-1221935 None:intergenic 5.0%
!! AATAATAATAATAAAATGAT+GGG - chr5_3:1222344-1222363 None:intergenic 5.0%
!! TAATAATAATAATAAAATGA+TGG - chr5_3:1222345-1222364 None:intergenic 5.0%
!! AAAAAAGTAAAAAAAAAAAA+AGG - chr5_3:1225564-1225583 None:intergenic 5.0%
!! TTATTATTATTTATTAAACA+AGG - chr5_3:1221916-1221935 None:intergenic 5.0%
!! AATAATAATAATAAAATGAT+GGG - chr5_3:1222344-1222363 None:intergenic 5.0%
!! TAATAATAATAATAAAATGA+TGG - chr5_3:1222345-1222364 None:intergenic 5.0%
!! AAAAAAGTAAAAAAAAAAAA+AGG - chr5_3:1225564-1225583 None:intergenic 5.0%
TCCATGTCCATGACCATGTG+GGG - chr5_3:1222241-1222260 None:intergenic 50.0%
GTCCATGTCCATGACCATGT+GGG - chr5_3:1222242-1222261 None:intergenic 50.0%
TGTCCATGTCCATGACCATG+TGG - chr5_3:1222243-1222262 None:intergenic 50.0%
CATGGTCATGGACATGGACA+TGG + chr5_3:1222243-1222262 Msa0790440:CDS 50.0%
CATGGACATGGACATGGACA+TGG + chr5_3:1222249-1222268 Msa0790440:CDS 50.0%
GAGAACCTGATAGGAGAAGG+AGG - chr5_3:1222279-1222298 None:intergenic 50.0%
TCGGAGAACCTGATAGGAGA+AGG - chr5_3:1222282-1222301 None:intergenic 50.0%
CATAATAAAGCCGCTGGCAC+CGG - chr5_3:1222535-1222554 None:intergenic 50.0%
ACATCCTATCACCAGGCCTA+TGG + chr5_3:1222608-1222627 Msa0790440:CDS 50.0%
CGTATACGAAGCAGTGATGC+AGG + chr5_3:1222706-1222725 Msa0790440:intron 50.0%
GCAGTGATGCAGGTCTTCTA+AGG + chr5_3:1222716-1222735 Msa0790440:intron 50.0%
GAAAGGGCCAAACCCATTGT+GGG + chr5_3:1223052-1223071 Msa0790440:intron 50.0%
GGAAGAGAGGAAGGAGAGAA+GGG + chr5_3:1223465-1223484 Msa0790440:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr5_3:1223504-1223523 Msa0790440:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr5_3:1223505-1223524 Msa0790440:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+GGG + chr5_3:1223504-1223523 Msa0790440:intron 50.0%
AGAGAGAGGGGAGAAAAGAG+AGG + chr5_3:1223522-1223541 Msa0790440:intron 50.0%
AGAGGAGAGAGAGAGAGAGA+AGG + chr5_3:1223540-1223559 Msa0790440:intron 50.0%
GAGGAGAGAGAGAGAGAGAA+GGG + chr5_3:1223541-1223560 Msa0790440:intron 50.0%
AAGAGAGAAGGGAGAGAGAG+AGG + chr5_3:1223578-1223597 Msa0790440:intron 50.0%
GTGTGAGAAGGGGGATGTAT+TGG - chr5_3:1223996-1224015 None:intergenic 50.0%
TACATCCCCCTTCTCACACA+TGG + chr5_3:1223997-1224016 Msa0790440:intron 50.0%
ACATCCCCCTTCTCACACAT+GGG + chr5_3:1223998-1224017 Msa0790440:intron 50.0%
ATTGCCCATGTGTGAGAAGG+GGG - chr5_3:1224005-1224024 None:intergenic 50.0%
ACCCACTGGAGATGCTTGAA+AGG - chr5_3:1224183-1224202 None:intergenic 50.0%
TTCAAGCATCTCCAGTGGGT+TGG + chr5_3:1224183-1224202 Msa0790440:CDS 50.0%
CGGGAACTCGTTGAAAAGAG+TGG + chr5_3:1224412-1224431 Msa0790440:CDS 50.0%
AGGGTTTACATCAGAGGCTG+TGG + chr5_3:1224452-1224471 Msa0790440:CDS 50.0%
TGTAGTGTCCTTCAGTTCCG+TGG + chr5_3:1224571-1224590 Msa0790440:intron 50.0%
! AGAGCCATTGCACTTGTTGG+TGG + chr5_3:1224965-1224984 Msa0790440:CDS 50.0%
! CTAACACTTGGTAACCTGGC+AGG + chr5_3:1225136-1225155 Msa0790440:intron 50.0%
CTCATACTAGGGCTCATGCT+TGG - chr5_3:1225239-1225258 None:intergenic 50.0%
GGAATGAAACGTGCCAAGAC+AGG + chr5_3:1225287-1225306 Msa0790440:CDS 50.0%
GAGTTTGCAAGTGACCATCG+TGG + chr5_3:1225762-1225781 Msa0790440:three_prime_UTR 50.0%
TCCATGTCCATGACCATGTG+GGG - chr5_3:1222241-1222260 None:intergenic 50.0%
GTCCATGTCCATGACCATGT+GGG - chr5_3:1222242-1222261 None:intergenic 50.0%
TGTCCATGTCCATGACCATG+TGG - chr5_3:1222243-1222262 None:intergenic 50.0%
CATGGTCATGGACATGGACA+TGG + chr5_3:1222243-1222262 Msa0790440:CDS 50.0%
CATGGACATGGACATGGACA+TGG + chr5_3:1222249-1222268 Msa0790440:CDS 50.0%
GAGAACCTGATAGGAGAAGG+AGG - chr5_3:1222279-1222298 None:intergenic 50.0%
TCGGAGAACCTGATAGGAGA+AGG - chr5_3:1222282-1222301 None:intergenic 50.0%
CATAATAAAGCCGCTGGCAC+CGG - chr5_3:1222535-1222554 None:intergenic 50.0%
ACATCCTATCACCAGGCCTA+TGG + chr5_3:1222608-1222627 Msa0790440:CDS 50.0%
CGTATACGAAGCAGTGATGC+AGG + chr5_3:1222706-1222725 Msa0790440:intron 50.0%
GCAGTGATGCAGGTCTTCTA+AGG + chr5_3:1222716-1222735 Msa0790440:intron 50.0%
GAAAGGGCCAAACCCATTGT+GGG + chr5_3:1223052-1223071 Msa0790440:intron 50.0%
GGAAGAGAGGAAGGAGAGAA+GGG + chr5_3:1223465-1223484 Msa0790440:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr5_3:1223504-1223523 Msa0790440:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr5_3:1223505-1223524 Msa0790440:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+GGG + chr5_3:1223504-1223523 Msa0790440:intron 50.0%
AGAGAGAGGGGAGAAAAGAG+AGG + chr5_3:1223522-1223541 Msa0790440:intron 50.0%
AGAGGAGAGAGAGAGAGAGA+AGG + chr5_3:1223540-1223559 Msa0790440:intron 50.0%
GAGGAGAGAGAGAGAGAGAA+GGG + chr5_3:1223541-1223560 Msa0790440:intron 50.0%
AAGAGAGAAGGGAGAGAGAG+AGG + chr5_3:1223578-1223597 Msa0790440:intron 50.0%
GTGTGAGAAGGGGGATGTAT+TGG - chr5_3:1223996-1224015 None:intergenic 50.0%
TACATCCCCCTTCTCACACA+TGG + chr5_3:1223997-1224016 Msa0790440:intron 50.0%
ACATCCCCCTTCTCACACAT+GGG + chr5_3:1223998-1224017 Msa0790440:intron 50.0%
ATTGCCCATGTGTGAGAAGG+GGG - chr5_3:1224005-1224024 None:intergenic 50.0%
ACCCACTGGAGATGCTTGAA+AGG - chr5_3:1224183-1224202 None:intergenic 50.0%
TTCAAGCATCTCCAGTGGGT+TGG + chr5_3:1224183-1224202 Msa0790440:CDS 50.0%
CGGGAACTCGTTGAAAAGAG+TGG + chr5_3:1224412-1224431 Msa0790440:CDS 50.0%
AGGGTTTACATCAGAGGCTG+TGG + chr5_3:1224452-1224471 Msa0790440:CDS 50.0%
TGTAGTGTCCTTCAGTTCCG+TGG + chr5_3:1224571-1224590 Msa0790440:intron 50.0%
! AGAGCCATTGCACTTGTTGG+TGG + chr5_3:1224965-1224984 Msa0790440:CDS 50.0%
! CTAACACTTGGTAACCTGGC+AGG + chr5_3:1225136-1225155 Msa0790440:intron 50.0%
CTCATACTAGGGCTCATGCT+TGG - chr5_3:1225239-1225258 None:intergenic 50.0%
GGAATGAAACGTGCCAAGAC+AGG + chr5_3:1225287-1225306 Msa0790440:CDS 50.0%
GAGTTTGCAAGTGACCATCG+TGG + chr5_3:1225762-1225781 Msa0790440:three_prime_UTR 50.0%
! TGTGGCGTGGTGATTGACTC+TGG + chr5_3:1221751-1221770 Msa0790440:five_prime_UTR 55.0%
! GGTGATTGACTCTGGTGTCG+TGG + chr5_3:1221759-1221778 Msa0790440:five_prime_UTR 55.0%
GAGAGTGGATCCCCCAATCT+GGG + chr5_3:1222127-1222146 Msa0790440:CDS 55.0%
! CAGGAGCATGAGGAGGGAAT+TGG - chr5_3:1222191-1222210 None:intergenic 55.0%
CCATGTCCATGACCATGTGG+GGG - chr5_3:1222240-1222259 None:intergenic 55.0%
GACTCCCTCCTTCTCCTATC+AGG + chr5_3:1222271-1222290 Msa0790440:CDS 55.0%
TCGCGATCGGAGAACCTGAT+AGG - chr5_3:1222288-1222307 None:intergenic 55.0%
TCAGGTTCTCCGATCGCGAA+AGG + chr5_3:1222289-1222308 Msa0790440:CDS 55.0%
!! CGGTGCCAGCGGCTTTATTA+TGG + chr5_3:1222533-1222552 Msa0790440:CDS 55.0%
TGAGGTAAGGGGGGCCTAAA+AGG - chr5_3:1222588-1222607 None:intergenic 55.0%
GGCCTGGTGATAGGATGTTG+AGG - chr5_3:1222606-1222625 None:intergenic 55.0%
CCAGTCGAAATCCATAGGCC+TGG - chr5_3:1222622-1222641 None:intergenic 55.0%
CCAGGCCTATGGATTTCGAC+TGG + chr5_3:1222619-1222638 Msa0790440:CDS 55.0%
TGGGGCCAGTCGAAATCCAT+AGG - chr5_3:1222627-1222646 None:intergenic 55.0%
! TTTCGACTGGCCCCATAGAG+AGG + chr5_3:1222632-1222651 Msa0790440:CDS 55.0%
CGAAAGGGCCAAACCCATTG+TGG + chr5_3:1223051-1223070 Msa0790440:intron 55.0%
GATAGAGAGAGGGGGAAGAG+AGG + chr5_3:1223452-1223471 Msa0790440:intron 55.0%
GGGAAGAGAGGAAGGAGAGA+AGG + chr5_3:1223464-1223483 Msa0790440:intron 55.0%
AGAGAAGGGAGAGAGAGAGG+AGG + chr5_3:1223581-1223600 Msa0790440:intron 55.0%
GAGAAGGGAGAGAGAGAGGA+GGG + chr5_3:1223582-1223601 Msa0790440:intron 55.0%
GAGGGAAGGGAGAAGAGAGA+AGG + chr5_3:1223620-1223639 Msa0790440:intron 55.0%
!! CATCTCCAGTGGGTTGGCAT+GGG + chr5_3:1224189-1224208 Msa0790440:CDS 55.0%
! CTTTTCAACGAGTTCCCGCG+AGG - chr5_3:1224410-1224429 None:intergenic 55.0%
AGTGTCCTTCAGTTCCGTGG+TGG + chr5_3:1224574-1224593 Msa0790440:intron 55.0%
! GCCATTGCACTTGTTGGTGG+AGG + chr5_3:1224968-1224987 Msa0790440:CDS 55.0%
GCCTCCACCAACAAGTGCAA+TGG - chr5_3:1224972-1224991 None:intergenic 55.0%
CTGGGGTCATCTTCCTGTCT+TGG - chr5_3:1225303-1225322 None:intergenic 55.0%
! TGTGGCGTGGTGATTGACTC+TGG + chr5_3:1221751-1221770 Msa0790440:five_prime_UTR 55.0%
! GGTGATTGACTCTGGTGTCG+TGG + chr5_3:1221759-1221778 Msa0790440:five_prime_UTR 55.0%
GAGAGTGGATCCCCCAATCT+GGG + chr5_3:1222127-1222146 Msa0790440:CDS 55.0%
! CAGGAGCATGAGGAGGGAAT+TGG - chr5_3:1222191-1222210 None:intergenic 55.0%
CCATGTCCATGACCATGTGG+GGG - chr5_3:1222240-1222259 None:intergenic 55.0%
GACTCCCTCCTTCTCCTATC+AGG + chr5_3:1222271-1222290 Msa0790440:CDS 55.0%
TCGCGATCGGAGAACCTGAT+AGG - chr5_3:1222288-1222307 None:intergenic 55.0%
TCAGGTTCTCCGATCGCGAA+AGG + chr5_3:1222289-1222308 Msa0790440:CDS 55.0%
!! CGGTGCCAGCGGCTTTATTA+TGG + chr5_3:1222533-1222552 Msa0790440:CDS 55.0%
TGAGGTAAGGGGGGCCTAAA+AGG - chr5_3:1222588-1222607 None:intergenic 55.0%
GGCCTGGTGATAGGATGTTG+AGG - chr5_3:1222606-1222625 None:intergenic 55.0%
CCAGTCGAAATCCATAGGCC+TGG - chr5_3:1222622-1222641 None:intergenic 55.0%
CCAGGCCTATGGATTTCGAC+TGG + chr5_3:1222619-1222638 Msa0790440:CDS 55.0%
TGGGGCCAGTCGAAATCCAT+AGG - chr5_3:1222627-1222646 None:intergenic 55.0%
! TTTCGACTGGCCCCATAGAG+AGG + chr5_3:1222632-1222651 Msa0790440:CDS 55.0%
CGAAAGGGCCAAACCCATTG+TGG + chr5_3:1223051-1223070 Msa0790440:intron 55.0%
GATAGAGAGAGGGGGAAGAG+AGG + chr5_3:1223452-1223471 Msa0790440:intron 55.0%
GGGAAGAGAGGAAGGAGAGA+AGG + chr5_3:1223464-1223483 Msa0790440:intron 55.0%
AGAGAAGGGAGAGAGAGAGG+AGG + chr5_3:1223581-1223600 Msa0790440:intron 55.0%
GAGAAGGGAGAGAGAGAGGA+GGG + chr5_3:1223582-1223601 Msa0790440:intron 55.0%
GAGGGAAGGGAGAAGAGAGA+AGG + chr5_3:1223620-1223639 Msa0790440:intron 55.0%
!! CATCTCCAGTGGGTTGGCAT+GGG + chr5_3:1224189-1224208 Msa0790440:CDS 55.0%
! CTTTTCAACGAGTTCCCGCG+AGG - chr5_3:1224410-1224429 None:intergenic 55.0%
AGTGTCCTTCAGTTCCGTGG+TGG + chr5_3:1224574-1224593 Msa0790440:intron 55.0%
! GCCATTGCACTTGTTGGTGG+AGG + chr5_3:1224968-1224987 Msa0790440:CDS 55.0%
GCCTCCACCAACAAGTGCAA+TGG - chr5_3:1224972-1224991 None:intergenic 55.0%
CTGGGGTCATCTTCCTGTCT+TGG - chr5_3:1225303-1225322 None:intergenic 55.0%
TCTCTTGGCTTCGCTGCGTG+TGG + chr5_3:1221718-1221737 Msa0790440:five_prime_UTR 60.0%
GCTTCGCTGCGTGTGGAGTT+TGG + chr5_3:1221725-1221744 Msa0790440:five_prime_UTR 60.0%
GCGTGTGGAGTTTGGCAGTG+TGG + chr5_3:1221733-1221752 Msa0790440:five_prime_UTR 60.0%
TGGAGTTTGGCAGTGTGGCG+TGG + chr5_3:1221738-1221757 Msa0790440:five_prime_UTR 60.0%
GGAGAGTGGATCCCCCAATC+TGG + chr5_3:1222126-1222145 Msa0790440:CDS 60.0%
ATGAGGAGGAGGAGGAGGAG+CGG - chr5_3:1222217-1222236 None:intergenic 60.0%
TGACCATGTGGGGGATGAGG+AGG - chr5_3:1222231-1222250 None:intergenic 60.0%
CCATGACCATGTGGGGGATG+AGG - chr5_3:1222234-1222253 None:intergenic 60.0%
CCTCATCCCCCACATGGTCA+TGG + chr5_3:1222231-1222250 Msa0790440:CDS 60.0%
CCCCCACATGGTCATGGACA+TGG + chr5_3:1222237-1222256 Msa0790440:CDS 60.0%
! CGTATCTCATCCGGTGCCAG+CGG + chr5_3:1222522-1222541 Msa0790440:CDS 60.0%
GAGAGAGGGGGAAGAGAGGA+AGG + chr5_3:1223456-1223475 Msa0790440:intron 60.0%
!! GCATCTCCAGTGGGTTGGCA+TGG + chr5_3:1224188-1224207 Msa0790440:CDS 60.0%
GGAGTCGTCGGAACTCCTTG+TGG - chr5_3:1224215-1224234 None:intergenic 60.0%
!! GGTCGAATTCTGGGACCTCG+CGG + chr5_3:1224392-1224411 Msa0790440:CDS 60.0%
!! GTCGAATTCTGGGACCTCGC+GGG + chr5_3:1224393-1224412 Msa0790440:CDS 60.0%
! CAGAGGCTGTGGCTCTGTGA+AGG + chr5_3:1224463-1224482 Msa0790440:CDS 60.0%
GGTGGAGGCAGAGTTTCCTG+AGG + chr5_3:1224983-1225002 Msa0790440:CDS 60.0%
TTCCCGCTTGGACCATGCTG+TGG + chr5_3:1225016-1225035 Msa0790440:CDS 60.0%
TGCCACAGCATGGTCCAAGC+GGG - chr5_3:1225021-1225040 None:intergenic 60.0%
CTGCCACAGCATGGTCCAAG+CGG - chr5_3:1225022-1225041 None:intergenic 60.0%
CATCGACCAGCCCTGCAGAA+AGG - chr5_3:1225395-1225414 None:intergenic 60.0%
!! CTTTCTGCAGGGCTGGTCGA+TGG + chr5_3:1225393-1225412 Msa0790440:three_prime_UTR 60.0%
TCTCTTGGCTTCGCTGCGTG+TGG + chr5_3:1221718-1221737 Msa0790440:five_prime_UTR 60.0%
GCTTCGCTGCGTGTGGAGTT+TGG + chr5_3:1221725-1221744 Msa0790440:five_prime_UTR 60.0%
GCGTGTGGAGTTTGGCAGTG+TGG + chr5_3:1221733-1221752 Msa0790440:five_prime_UTR 60.0%
TGGAGTTTGGCAGTGTGGCG+TGG + chr5_3:1221738-1221757 Msa0790440:five_prime_UTR 60.0%
GGAGAGTGGATCCCCCAATC+TGG + chr5_3:1222126-1222145 Msa0790440:CDS 60.0%
ATGAGGAGGAGGAGGAGGAG+CGG - chr5_3:1222217-1222236 None:intergenic 60.0%
TGACCATGTGGGGGATGAGG+AGG - chr5_3:1222231-1222250 None:intergenic 60.0%
CCATGACCATGTGGGGGATG+AGG - chr5_3:1222234-1222253 None:intergenic 60.0%
CCTCATCCCCCACATGGTCA+TGG + chr5_3:1222231-1222250 Msa0790440:CDS 60.0%
CCCCCACATGGTCATGGACA+TGG + chr5_3:1222237-1222256 Msa0790440:CDS 60.0%
! CGTATCTCATCCGGTGCCAG+CGG + chr5_3:1222522-1222541 Msa0790440:CDS 60.0%
GAGAGAGGGGGAAGAGAGGA+AGG + chr5_3:1223456-1223475 Msa0790440:intron 60.0%
!! GCATCTCCAGTGGGTTGGCA+TGG + chr5_3:1224188-1224207 Msa0790440:CDS 60.0%
GGAGTCGTCGGAACTCCTTG+TGG - chr5_3:1224215-1224234 None:intergenic 60.0%
!! GGTCGAATTCTGGGACCTCG+CGG + chr5_3:1224392-1224411 Msa0790440:CDS 60.0%
!! GTCGAATTCTGGGACCTCGC+GGG + chr5_3:1224393-1224412 Msa0790440:CDS 60.0%
! CAGAGGCTGTGGCTCTGTGA+AGG + chr5_3:1224463-1224482 Msa0790440:CDS 60.0%
GGTGGAGGCAGAGTTTCCTG+AGG + chr5_3:1224983-1225002 Msa0790440:CDS 60.0%
TTCCCGCTTGGACCATGCTG+TGG + chr5_3:1225016-1225035 Msa0790440:CDS 60.0%
TGCCACAGCATGGTCCAAGC+GGG - chr5_3:1225021-1225040 None:intergenic 60.0%
CTGCCACAGCATGGTCCAAG+CGG - chr5_3:1225022-1225041 None:intergenic 60.0%
CATCGACCAGCCCTGCAGAA+AGG - chr5_3:1225395-1225414 None:intergenic 60.0%
!! CTTTCTGCAGGGCTGGTCGA+TGG + chr5_3:1225393-1225412 Msa0790440:three_prime_UTR 60.0%
! CGGGAGCAGGAGCATGAGGA+GGG - chr5_3:1222197-1222216 None:intergenic 65.0%
TGAGGAGGAGGAGGAGGAGC+GGG - chr5_3:1222216-1222235 None:intergenic 65.0%
TGTGGGGGATGAGGAGGAGG+AGG - chr5_3:1222225-1222244 None:intergenic 65.0%
CCATGTGGGGGATGAGGAGG+AGG - chr5_3:1222228-1222247 None:intergenic 65.0%
CCTCCTCCTCATCCCCCACA+TGG + chr5_3:1222225-1222244 Msa0790440:CDS 65.0%
TGTGGCCCATGCCAACCCAC+TGG - chr5_3:1224197-1224216 None:intergenic 65.0%
!! GTGGGTTGGCATGGGCCACA+AGG + chr5_3:1224197-1224216 Msa0790440:CDS 65.0%
TGGTGGCCTTTCTGCAGGGC+TGG + chr5_3:1225386-1225405 Msa0790440:three_prime_UTR 65.0%
! CGGGAGCAGGAGCATGAGGA+GGG - chr5_3:1222197-1222216 None:intergenic 65.0%
TGAGGAGGAGGAGGAGGAGC+GGG - chr5_3:1222216-1222235 None:intergenic 65.0%
TGTGGGGGATGAGGAGGAGG+AGG - chr5_3:1222225-1222244 None:intergenic 65.0%
CCATGTGGGGGATGAGGAGG+AGG - chr5_3:1222228-1222247 None:intergenic 65.0%
CCTCCTCCTCATCCCCCACA+TGG + chr5_3:1222225-1222244 Msa0790440:CDS 65.0%
TGTGGCCCATGCCAACCCAC+TGG - chr5_3:1224197-1224216 None:intergenic 65.0%
!! GTGGGTTGGCATGGGCCACA+AGG + chr5_3:1224197-1224216 Msa0790440:CDS 65.0%
TGGTGGCCTTTCTGCAGGGC+TGG + chr5_3:1225386-1225405 Msa0790440:three_prime_UTR 65.0%
! GCGGGAGCAGGAGCATGAGG+AGG - chr5_3:1222198-1222217 None:intergenic 70.0%
! GGAGCGGGAGCAGGAGCATG+AGG - chr5_3:1222201-1222220 None:intergenic 70.0%
GGGGGATGAGGAGGAGGAGG+AGG - chr5_3:1222222-1222241 None:intergenic 70.0%
! GCGGGAGCAGGAGCATGAGG+AGG - chr5_3:1222198-1222217 None:intergenic 70.0%
! GGAGCGGGAGCAGGAGCATG+AGG - chr5_3:1222201-1222220 None:intergenic 70.0%
GGGGGATGAGGAGGAGGAGG+AGG - chr5_3:1222222-1222241 None:intergenic 70.0%
GGAGGAGGAGGAGCGGGAGC+AGG - chr5_3:1222210-1222229 None:intergenic 75.0%
GGAGGAGGAGGAGCGGGAGC+AGG - chr5_3:1222210-1222229 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 1221713 1225813 1221713 ID=Msa0790440;Name=Msa0790440
chr5_3 mRNA 1221713 1225813 1221713 ID=Msa0790440-mRNA-1;Parent=Msa0790440;Name=Msa0790440-mRNA-1;_AED=0.09;_eAED=0.09;_QI=137|1|1|1|0.83|0.71|7|497|323
chr5_3 exon 1221713 1221811 1221713 ID=Msa0790440-mRNA-1:exon:426;Parent=Msa0790440-mRNA-1
chr5_3 exon 1222085 1222310 1222085 ID=Msa0790440-mRNA-1:exon:427;Parent=Msa0790440-mRNA-1
chr5_3 exon 1222428 1222653 1222428 ID=Msa0790440-mRNA-1:exon:428;Parent=Msa0790440-mRNA-1
chr5_3 exon 1224152 1224286 1224152 ID=Msa0790440-mRNA-1:exon:429;Parent=Msa0790440-mRNA-1
chr5_3 exon 1224377 1224496 1224377 ID=Msa0790440-mRNA-1:exon:430;Parent=Msa0790440-mRNA-1
chr5_3 exon 1224924 1225067 1224924 ID=Msa0790440-mRNA-1:exon:431;Parent=Msa0790440-mRNA-1
chr5_3 exon 1225158 1225813 1225158 ID=Msa0790440-mRNA-1:exon:432;Parent=Msa0790440-mRNA-1
chr5_3 five_prime_UTR 1221713 1221811 1221713 ID=Msa0790440-mRNA-1:five_prime_utr;Parent=Msa0790440-mRNA-1
chr5_3 five_prime_UTR 1222085 1222122 1222085 ID=Msa0790440-mRNA-1:five_prime_utr;Parent=Msa0790440-mRNA-1
chr5_3 CDS 1222123 1222310 1222123 ID=Msa0790440-mRNA-1:cds;Parent=Msa0790440-mRNA-1
chr5_3 CDS 1222428 1222653 1222428 ID=Msa0790440-mRNA-1:cds;Parent=Msa0790440-mRNA-1
chr5_3 CDS 1224152 1224286 1224152 ID=Msa0790440-mRNA-1:cds;Parent=Msa0790440-mRNA-1
chr5_3 CDS 1224377 1224496 1224377 ID=Msa0790440-mRNA-1:cds;Parent=Msa0790440-mRNA-1
chr5_3 CDS 1224924 1225067 1224924 ID=Msa0790440-mRNA-1:cds;Parent=Msa0790440-mRNA-1
chr5_3 CDS 1225158 1225316 1225158 ID=Msa0790440-mRNA-1:cds;Parent=Msa0790440-mRNA-1
chr5_3 three_prime_UTR 1225317 1225813 1225317 ID=Msa0790440-mRNA-1:three_prime_utr;Parent=Msa0790440-mRNA-1
Gene Sequence

>Msa0790440

ATGGGAGAGTGGATCCCCCAATCTGGGAATAATAATAATAATAATAATAATAATGGTAGTTATTTCCAATTCCCTCCTCATGCTCCTGCTCCCGCTCCTCCTCCTCCTCCTCATCCCCCACATGGTCATGGACATGGACATGGACATGGACTCCCTCCTTCTCCTATCAGGTTCTCCGATCGCGAAAGATATTTGGCCGAACTCTTGGCTGAGAGACAAAAGTTGGGACCCTTTTTGCAAGTTCTCCCACAATCTACCCGACTCTTAACTCAGGAAATCAGACGTATCTCATCCGGTGCCAGCGGCTTTATTATGGAACATGACCATCCTGACTCTTCTACTACTCCTTTTAGGCCCCCCTTACCTCAACATCCTATCACCAGGCCTATGGATTTCGACTGGCCCCATAGAGAGGACAATGGGAATATCCAAAGAATGGGATCCTTTCAAGCATCTCCAGTGGGTTGGCATGGGCCACAAGGAGTTCCGACGACTCCTATAGTGAAGAGAGTTATCAGGCTTGATGTCCCTGTCGACAAATATCCAAATCAGTATAATTTTGTTGGTCGAATTCTGGGACCTCGCGGGAACTCGTTGAAAAGAGTGGAAGCCATGACAGAATGTAGGGTTTACATCAGAGGCTGTGGCTCTGTGAAGGATTCGATTAAGGAAGAGAAGCTTAAAGATAAACCTGGTTATGAGCACCTTAAAGAGCCATTGCACTTGTTGGTGGAGGCAGAGTTTCCTGAGGATATAATCAATTCCCGCTTGGACCATGCTGTGGCAGTACTAGAAAATCTTTTGAAGCCTGTGGATGAATCACTTGATCACTACAAGAAGCAGCAATTGAGGGAGTTAGCTATGATCAATGGTACTTTGAGGGAGGAAAGTCCAAGCATGAGCCCTAGTATGAGTCCAAGTATGTCACCTTTCAATAGTAATGGAATGAAACGTGCCAAGACAGGAAGATGA
Protein sequence

>Msa0790440

MGEWIPQSGNNNNNNNNNGSYFQFPPHAPAPAPPPPPHPPHGHGHGHGHGLPPSPIRFSDRERYLAELLAERQKLGPFLQVLPQSTRLLTQEIRRISSGASGFIMEHDHPDSSTTPFRPPLPQHPITRPMDFDWPHREDNGNIQRMGSFQASPVGWHGPQGVPTTPIVKRVIRLDVPVDKYPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHLKEPLHLLVEAEFPEDIINSRLDHAVAVLENLLKPVDESLDHYKKQQLRELAMINGTLREESPSMSPSMSPSMSPFNSNGMKRAKTGR*