AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0270170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0270170 MtrunA17_Chr2g0276961 95.652 322 4 3 1 322 1 312 0.0 616
Msa0270170 MtrunA17_Chr3g0080071 49.536 323 114 12 13 320 3 291 1.02e-85 259
Msa0270170 MtrunA17_Chr8g0334451 52.874 261 107 5 62 322 32 276 1.97e-82 251
Msa0270170 MtrunA17_Chr3g0108401 50.558 269 115 7 57 320 5 260 1.62e-79 243
Msa0270170 MtrunA17_Chr7g0245301 50.951 263 118 4 62 322 28 281 5.63e-79 242
Msa0270170 MtrunA17_Chr5g0432901 50.746 268 112 6 57 320 28 279 2.60e-78 240
Msa0270170 MtrunA17_Chr4g0018581 46.774 124 59 3 172 295 217 333 7.11e-26 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0270170 AT1G09660.1 59.547 309 89 8 18 320 18 296 8.22e-110 321
Msa0270170 AT1G09660.3 59.547 309 89 8 18 320 18 296 8.22e-110 321
Msa0270170 AT4G26480.3 49.837 307 123 9 20 320 25 306 3.72e-84 256
Msa0270170 AT4G26480.1 49.837 307 123 9 20 320 25 306 3.72e-84 256
Msa0270170 AT1G09660.2 56.538 260 82 6 18 273 18 250 3.51e-83 252
Msa0270170 AT5G56140.1 50.340 294 123 7 31 320 38 312 9.24e-82 251
Msa0270170 AT3G08620.1 52.091 263 115 4 62 322 30 283 6.18e-80 245
Msa0270170 AT2G38610.2 50.923 271 112 8 59 321 28 285 2.15e-76 236
Msa0270170 AT2G38610.1 50.923 271 112 8 59 321 28 285 2.15e-76 236
Msa0270170 AT3G08620.2 51.012 247 110 4 78 322 1 238 1.15e-70 219
Msa0270170 AT4G26480.2 64.000 175 57 4 147 320 52 221 4.35e-69 215
Msa0270170 AT5G51300.1 47.581 124 58 3 172 295 244 360 1.71e-25 107
Msa0270170 AT5G51300.2 47.581 124 58 3 172 295 244 360 1.71e-25 107
Msa0270170 AT5G51300.3 47.581 124 58 3 172 295 244 360 1.71e-25 107

Find 146 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCATCTGATTTAGAATTTA+TGG 0.074104 2_3:-1470176 Msa0270170:three_prime_UTR
CGGTGCCAGCGGCTTTATTA+TGG 0.231411 2_3:-1473043 Msa0270170:CDS
ACAAGTGCAATGGCTCTTTA+AGG 0.242643 2_3:+1470583 None:intergenic
TGCAATGCATTACCTCTCTA+TGG 0.254875 2_3:+1472932 None:intergenic
CTTGAAAGGATCCCATTCTT+TGG 0.276158 2_3:+1471377 None:intergenic
CGCAGCAGTTGGGGTTCTCT+TGG 0.297747 2_3:-1473864 None:intergenic
TTGTGGGAGAACTTGCAAAA+AGG 0.318876 2_3:+1473107 None:intergenic
CTCTGTGAAGGATTCGATTA+AGG 0.328927 2_3:-1471067 Msa0270170:intron
GACTCCCTCCTTCTCCTATC+AGG 0.330439 2_3:-1473306 Msa0270170:CDS
GGAGGAGGAGGAGCGGGAGC+AGG 0.333878 2_3:+1473370 None:intergenic
ATTATTATTATTCCCAGATT+GGG 0.340347 2_3:+1473435 None:intergenic
CATATTCCACAATCAAATTC+CGG 0.343097 2_3:+1469741 None:intergenic
AAGATTGACTGTTAACATAC+TGG 0.343921 2_3:+1470223 None:intergenic
TATTATTATTATTCCCAGAT+TGG 0.356424 2_3:+1473434 None:intergenic
ATTTATGGTGGCCTTTCTGC+AGG 0.366745 2_3:-1470161 Msa0270170:three_prime_UTR
GCTTCGCTGCGTGTGGAGTT+TGG 0.373802 2_3:-1473842 Msa0270170:five_prime_UTR
CAGGAGCATGAGGAGGGAAT+TGG 0.377923 2_3:+1473389 None:intergenic
CTGATAACTCTCTTCACTAT+AGG 0.381788 2_3:+1471310 None:intergenic
GCATCTCCAGTGGGTTGGCA+TGG 0.392051 2_3:-1471355 Msa0270170:CDS
TCGCGATCGGAGAACCTGAT+AGG 0.403053 2_3:+1473292 None:intergenic
CTTTCTGCAGGGCTGGTCGA+TGG 0.412461 2_3:-1470149 Msa0270170:three_prime_UTR
TAGATATTTGGCCGAACTCT+TGG 0.413533 2_3:-1473151 Msa0270170:CDS
CTATAGTGAAGAGAGTTATC+AGG 0.414243 2_3:-1471309 Msa0270170:CDS
CTATTGAAAGGTGACATACT+TGG 0.416568 2_3:+1470282 None:intergenic
TAAAGAGCCATTGCACTTGT+TGG 0.421722 2_3:-1470580 Msa0270170:CDS
GACATACTTGGACTCATACT+AGG 0.423494 2_3:+1470294 None:intergenic
AAGGATAGAAGATGGGAGAG+TGG 0.428420 2_3:-1473462 Msa0270170:exon
TATGATCAATGGTACTTTGA+GGG 0.439845 2_3:-1470337 Msa0270170:CDS
CTGGGGTCATCTTCCTGTCT+TGG 0.441491 2_3:+1470242 None:intergenic
AGAAGAAGAAGGATAGAAGA+TGG 0.445365 2_3:-1473470 Msa0270170:exon
CAATGGGAATATCCAAAGAA+TGG 0.459480 2_3:-1471389 Msa0270170:CDS
GCAATGCATTACCTCTCTAT+GGG 0.459763 2_3:+1472933 None:intergenic
ACATTTGGATATTTGTCGAC+AGG 0.460627 2_3:+1471277 None:intergenic
GGAGCGGGAGCAGGAGCATG+AGG 0.461728 2_3:+1473379 None:intergenic
TTGTCTCTCAGCCAAGAGTT+CGG 0.463348 2_3:+1473140 None:intergenic
TGGTGGCCTTTCTGCAGGGC+TGG 0.464791 2_3:-1470156 Msa0270170:three_prime_UTR
ACATCCTATCACCAGGCCTA+TGG 0.465082 2_3:-1472968 Msa0270170:CDS
ATTAAAGTACCTTTCGCGAT+CGG 0.471477 2_3:+1473279 None:intergenic
TTAAGAGTCGGGTAGATTGT+GGG 0.477974 2_3:+1473091 None:intergenic
CTTGGCTGAGAGACAAAAGT+TGG 0.478339 2_3:-1473133 Msa0270170:CDS
CAGATGGTCATAATCTAGCT+TGG 0.478587 2_3:+1470191 None:intergenic
CATAATAAAGCCGCTGGCAC+CGG 0.478992 2_3:+1473044 None:intergenic
GCGGGAGCAGGAGCATGAGG+AGG 0.483859 2_3:+1473382 None:intergenic
CTATGATCAATGGTACTTTG+AGG 0.483911 2_3:-1470338 Msa0270170:CDS
AATGGGAATATCCAAAGAAT+GGG 0.494069 2_3:-1471388 Msa0270170:CDS
TTCATTCCATTACTATTGAA+AGG 0.494268 2_3:+1470270 None:intergenic
TGTTCCCTATGCAGGACAAT+GGG 0.496093 2_3:-1471405 Msa0270170:intron
TTCAAGCATCTCCAGTGGGT+TGG 0.497725 2_3:-1471360 Msa0270170:CDS
AGATGGTCATAATCTAGCTT+GGG 0.498351 2_3:+1470192 None:intergenic
AGAGCCATTGCACTTGTTGG+TGG 0.501510 2_3:-1470577 Msa0270170:CDS
AAAGGAGTAGTAGAAGAGTC+AGG 0.501586 2_3:+1473009 None:intergenic
TCTCTTGGCTTCGCTGCGTG+TGG 0.502862 2_3:-1473849 Msa0270170:five_prime_UTR
TGTGGCCCATGCCAACCCAC+TGG 0.504009 2_3:+1471349 None:intergenic
AAATCCATAGGCCTGGTGAT+AGG 0.504456 2_3:+1472964 None:intergenic
GCCATTGCACTTGTTGGTGG+AGG 0.504952 2_3:-1470574 Msa0270170:CDS
GGAATGAAACGTGCCAAGAC+AGG 0.508950 2_3:-1470255 Msa0270170:CDS
GAAGAAGAAGGATAGAAGAT+GGG 0.509491 2_3:-1473469 Msa0270170:exon
CTCATACTAGGGCTCATGCT+TGG 0.511219 2_3:+1470306 None:intergenic
ACTACAAGAAGCAGCAATTG+AGG 0.513008 2_3:-1470368 Msa0270170:CDS
GAAATCAGACGTATCTCATC+CGG 0.516750 2_3:-1473063 Msa0270170:CDS
ATGTCACCTTTCAATAGTAA+TGG 0.520448 2_3:-1470276 Msa0270170:CDS
TCCTTTCAAGCATCTCCAGT+GGG 0.523241 2_3:-1471364 Msa0270170:CDS
TGGAAGCCATGACAGAATGT+AGG 0.523637 2_3:-1471110 Msa0270170:CDS
CATCGACCAGCCCTGCAGAA+AGG 0.524029 2_3:+1470150 None:intergenic
TCTTTAAGGTGCTCATAACC+AGG 0.524384 2_3:+1470597 None:intergenic
TTATTATTATTCCCAGATTG+GGG 0.527052 2_3:+1473436 None:intergenic
GTTAAGAGTCGGGTAGATTG+TGG 0.529482 2_3:+1473090 None:intergenic
CGGGAATTGATTATATCCTC+AGG 0.529551 2_3:+1470543 None:intergenic
AGATTGACTGTTAACATACT+GGG 0.532125 2_3:+1470224 None:intergenic
CATCTCCAGTGGGTTGGCAT+GGG 0.533583 2_3:-1471354 Msa0270170:CDS
ACCCACTGGAGATGCTTGAA+AGG 0.533812 2_3:+1471363 None:intergenic
CTCTTCACTATAGGAGTCGT+CGG 0.537410 2_3:+1471319 None:intergenic
CGGGAGCAGGAGCATGAGGA+GGG 0.543247 2_3:+1473383 None:intergenic
TGTGGCGTGGTGATTGACTC+TGG 0.544819 2_3:-1473816 Msa0270170:five_prime_UTR
GTGATAGGATGTTGAGGTAA+GGG 0.547615 2_3:+1472979 None:intergenic
CTACAAGAAGCAGCAATTGA+GGG 0.548640 2_3:-1470367 Msa0270170:CDS
ACCATAAATTCTAAATCAGA+TGG 0.550364 2_3:+1470175 None:intergenic
CATTTGGATATTTGTCGACA+GGG 0.550943 2_3:+1471278 None:intergenic
TGATTTCCTGAGTTAAGAGT+CGG 0.551617 2_3:+1473079 None:intergenic
CAAACTAGAAGTATGCTACT+AGG 0.554250 2_3:+1470007 None:intergenic
ATGTTCCATAATAAAGCCGC+TGG 0.554356 2_3:+1473038 None:intergenic
GAAGAGAAGTGAGTGAGTGA+AGG 0.555009 2_3:+1473781 None:intergenic
TGATAGGATGTTGAGGTAAG+GGG 0.555715 2_3:+1472980 None:intergenic
TCAGGTTCTCCGATCGCGAA+AGG 0.557194 2_3:-1473288 Msa0270170:intron
CCAGTCGAAATCCATAGGCC+TGG 0.557763 2_3:+1472957 None:intergenic
GATTTCCTGAGTTAAGAGTC+GGG 0.558765 2_3:+1473080 None:intergenic
GGTGATAGGATGTTGAGGTA+AGG 0.559417 2_3:+1472978 None:intergenic
ACATACTTGGACTCATACTA+GGG 0.560928 2_3:+1470295 None:intergenic
TTTATGGTGGCCTTTCTGCA+GGG 0.561741 2_3:-1470160 Msa0270170:three_prime_UTR
GATAGGATGTTGAGGTAAGG+GGG 0.563174 2_3:+1472981 None:intergenic
CATGGTCATGGACATGGACA+TGG 0.563740 2_3:-1473334 Msa0270170:CDS
TTGGCTGAGAGACAAAAGTT+GGG 0.564376 2_3:-1473132 Msa0270170:CDS
TAAATAAACAAATGTAGTAG+TGG 0.564796 2_3:-1469872 Msa0270170:three_prime_UTR
AGGGTTTACATCAGAGGCTG+TGG 0.564960 2_3:-1471090 Msa0270170:CDS
CAGAGGCTGTGGCTCTGTGA+AGG 0.566382 2_3:-1471079 Msa0270170:CDS
CATGGACATGGACATGGACA+TGG 0.568563 2_3:-1473328 Msa0270170:CDS
ATGTTCCCTATGCAGGACAA+TGG 0.568763 2_3:-1471406 Msa0270170:intron
GGAAGCCATGACAGAATGTA+GGG 0.569325 2_3:-1471109 Msa0270170:CDS
AGGGAGTTAGCTATGATCAA+TGG 0.569405 2_3:-1470348 Msa0270170:CDS
GGATATAATCAATTCCCGCT+TGG 0.572726 2_3:-1470538 Msa0270170:CDS
GTGGGTTGGCATGGGCCACA+AGG 0.575059 2_3:-1471346 Msa0270170:CDS
CGGGAACTCGTTGAAAAGAG+TGG 0.575178 2_3:-1471130 Msa0270170:CDS
TGCCACAGCATGGTCCAAGC+GGG 0.575252 2_3:+1470524 None:intergenic
GCCTCCACCAACAAGTGCAA+TGG 0.578150 2_3:+1470573 None:intergenic
AACAAAACAGAGAAATTAAG+CGG 0.580450 2_3:+1470121 None:intergenic
ATCCTTTCAAGCATCTCCAG+TGG 0.582822 2_3:-1471365 Msa0270170:CDS
TGGGGCCAGTCGAAATCCAT+AGG 0.583655 2_3:+1472952 None:intergenic
TCGGAGAACCTGATAGGAGA+AGG 0.584650 2_3:+1473298 None:intergenic
GGTCGAATTCTGGGACCTCG+CGG 0.587318 2_3:-1471150 Msa0270170:CDS
GGTGATTGACTCTGGTGTCG+TGG 0.589163 2_3:-1473808 Msa0270170:five_prime_UTR
GTCGAATTCTGGGACCTCGC+GGG 0.589903 2_3:-1471149 Msa0270170:CDS
TACCTCAACATCCTATCACC+AGG 0.590777 2_3:-1472975 Msa0270170:CDS
TTCCCGCTTGGACCATGCTG+TGG 0.591859 2_3:-1470526 Msa0270170:CDS
GAATGTAGGGTTTACATCAG+AGG 0.599054 2_3:-1471096 Msa0270170:CDS
GAGAACCTGATAGGAGAAGG+AGG 0.599547 2_3:+1473301 None:intergenic
TTTCGACTGGCCCCATAGAG+AGG 0.600627 2_3:-1472944 Msa0270170:intron
ATCTGATTTAGAATTTATGG+TGG 0.604203 2_3:-1470173 Msa0270170:three_prime_UTR
GTAAACCCTACATTCTGTCA+TGG 0.604388 2_3:+1471104 None:intergenic
CCAGGCCTATGGATTTCGAC+TGG 0.604436 2_3:-1472957 Msa0270170:CDS
TGTGTATATCTAAATATGCA+TGG 0.607204 2_3:-1469910 Msa0270170:three_prime_UTR
GAGTAGTAGAAGAGTCAGGA+TGG 0.607680 2_3:+1473013 None:intergenic
ATCTACCCGACTCTTAACTC+AGG 0.612173 2_3:-1473085 Msa0270170:CDS
GTACAGTCTTAACTAAGTTG+CGG 0.616322 2_3:-1470036 Msa0270170:three_prime_UTR
CGTATCTCATCCGGTGCCAG+CGG 0.617661 2_3:-1473054 Msa0270170:CDS
TATGTACCGGAATTTGATTG+TGG 0.618105 2_3:-1469747 Msa0270170:three_prime_UTR
TGTCCATGTCCATGACCATG+TGG 0.623116 2_3:+1473337 None:intergenic
GTCCATGTCCATGACCATGT+GGG 0.624947 2_3:+1473338 None:intergenic
AGAACCTGATAGGAGAAGGA+GGG 0.630410 2_3:+1473302 None:intergenic
TGGAGTTTGGCAGTGTGGCG+TGG 0.631308 2_3:-1473829 Msa0270170:five_prime_UTR
TCCATGTCCATGACCATGTG+GGG 0.635978 2_3:+1473339 None:intergenic
TTTCTAGTACTGCCACAGCA+TGG 0.639735 2_3:+1470514 None:intergenic
GGCCTGGTGATAGGATGTTG+AGG 0.640500 2_3:+1472973 None:intergenic
GAGAAGCTTAAAGATAAACC+TGG 0.641028 2_3:-1470615 Msa0270170:CDS
TACGACAGTCAATATTCTAG+CGG 0.652455 2_3:+1470072 None:intergenic
CTGCCACAGCATGGTCCAAG+CGG 0.660407 2_3:+1470523 None:intergenic
GATCAATGGTACTTTGAGGG+AGG 0.660469 2_3:-1470334 Msa0270170:CDS
GCGTGTGGAGTTTGGCAGTG+TGG 0.676441 2_3:-1473834 Msa0270170:five_prime_UTR
TATTATTATTCCCAGATTGG+GGG 0.682416 2_3:+1473437 None:intergenic
CAATGCATTACCTCTCTATG+GGG 0.692728 2_3:+1472934 None:intergenic
ATAGGATGTTGAGGTAAGGG+GGG 0.693945 2_3:+1472982 None:intergenic
GATTGACTGTTAACATACTG+GGG 0.695271 2_3:+1470225 None:intergenic
GGTGGAGGCAGAGTTTCCTG+AGG 0.696347 2_3:-1470559 Msa0270170:CDS
GGAGTCGTCGGAACTCCTTG+TGG 0.702280 2_3:+1471331 None:intergenic
CCATGTCCATGACCATGTGG+GGG 0.710004 2_3:+1473340 None:intergenic
GGTACATAAAACTACCACGA+TGG 0.733035 2_3:+1469762 None:intergenic
GAGTTTGCAAGTGACCATCG+TGG 0.769746 2_3:-1469776 Msa0270170:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATAATAATAATAAT+AGG - chr2_3:1469959-1469978 Msa0270170:three_prime_UTR 0.0%
!! AATAATAATAATAATAATAA+TGG - chr2_3:1470177-1470196 Msa0270170:three_prime_UTR 0.0%
!!! AAAAGATTTTATGAATTTTA+AGG - chr2_3:1471368-1471387 Msa0270170:CDS 10.0%
!!! TTTAATAAATTAGATTTTGA+TGG + chr2_3:1471820-1471839 None:intergenic 10.0%
!!! AATATTGACTAAATAAATTT+AGG - chr2_3:1472813-1472832 Msa0270170:intron 10.0%
!!! ATCAATCATTTTTAGATATT+TGG - chr2_3:1470438-1470457 Msa0270170:intron 15.0%
!!! AAGATTTTAAAAGATTTTGT+AGG - chr2_3:1471238-1471257 Msa0270170:intron 15.0%
!!! TTTACATCATAAGATTTTAA+AGG - chr2_3:1471322-1471341 Msa0270170:CDS 15.0%
!!! TAAGATTTTAAAGGATTTTA+TGG - chr2_3:1471331-1471350 Msa0270170:CDS 15.0%
!! TATATAATTCTTCAAATTGA+AGG + chr2_3:1472707-1472726 None:intergenic 15.0%
!!! TTTTTTATTTCTCATATGAA+TGG - chr2_3:1472899-1472918 Msa0270170:intron 15.0%
!! ATATTAATGAAAATTAGGAA+AGG + chr2_3:1472961-1472980 None:intergenic 15.0%
!!! TTCCTAATTTTCATTAATAT+AGG - chr2_3:1472961-1472980 Msa0270170:CDS 15.0%
!! TTCCTATATTAATGAAAATT+AGG + chr2_3:1472966-1472985 None:intergenic 15.0%
!! ATTATTATTATTCCCAGATT+GGG + chr2_3:1470169-1470188 None:intergenic 20.0%
!! TATTATTATTATTCCCAGAT+TGG + chr2_3:1470170-1470189 None:intergenic 20.0%
!!! CTAAGATCAATTTTGAAAAA+TGG + chr2_3:1470900-1470919 None:intergenic 20.0%
!!! CATTTTTCAAAATTGATCTT+AGG - chr2_3:1470898-1470917 Msa0270170:intron 20.0%
!!! ATTTTCAATTTGGATTTCAA+TGG - chr2_3:1471298-1471317 Msa0270170:CDS 20.0%
!! CAAAATCATTCAAATTTCAA+AGG + chr2_3:1471847-1471866 None:intergenic 20.0%
!! TTAATTATGAAAAAGACTTG+TGG + chr2_3:1472000-1472019 None:intergenic 20.0%
!!! ACTCTAAAGAACTATAAAAA+GGG - chr2_3:1472579-1472598 Msa0270170:intron 20.0%
!! TAAATAAACAAATGTAGTAG+TGG - chr2_3:1473729-1473748 Msa0270170:intron 20.0%
! GAGAGAAATAACGATAAAAA+AGG + chr2_3:1469867-1469886 None:intergenic 25.0%
! ATTCTGAATGAATGAATGAA+TGG - chr2_3:1470022-1470041 Msa0270170:three_prime_UTR 25.0%
! TTATTATTATTCCCAGATTG+GGG + chr2_3:1470168-1470187 None:intergenic 25.0%
!! AATAAAATGATGGGAAAGTA+AGG + chr2_3:1470359-1470378 None:intergenic 25.0%
! ATTCACTCAAGCATTAAAAA+TGG - chr2_3:1470706-1470725 Msa0270170:intron 25.0%
!!! AAGCATATAGACTTGTTTTA+AGG + chr2_3:1470993-1471012 None:intergenic 25.0%
! CTTAACATATGTATTGGATT+AGG - chr2_3:1471180-1471199 Msa0270170:intron 25.0%
!!! CATGATTTTAAAAGACAATC+AGG - chr2_3:1471275-1471294 Msa0270170:intron 25.0%
! ATCACTTAAAAAAAGTCTCA+TGG + chr2_3:1471874-1471893 None:intergenic 25.0%
!!! GTCATTTTAAAAAAGTCTTG+AGG + chr2_3:1471916-1471935 None:intergenic 25.0%
! GCAATTTAAAAAAAGTCTTG+TGG + chr2_3:1471958-1471977 None:intergenic 25.0%
! AAAAAAACTATTGCATTGTG+AGG - chr2_3:1472099-1472118 Msa0270170:intron 25.0%
! GAAGATAAACAGATATGATT+CGG + chr2_3:1472374-1472393 None:intergenic 25.0%
!! CACTCTAAAGAACTATAAAA+AGG - chr2_3:1472578-1472597 Msa0270170:intron 25.0%
!! CTCTAAAGAACTATAAAAAG+GGG - chr2_3:1472580-1472599 Msa0270170:intron 25.0%
! TTCATTCCATTACTATTGAA+AGG + chr2_3:1473334-1473353 None:intergenic 25.0%
!! ACCATCTGATTTAGAATTTA+TGG - chr2_3:1473425-1473444 Msa0270170:CDS 25.0%
! ACCATAAATTCTAAATCAGA+TGG + chr2_3:1473429-1473448 None:intergenic 25.0%
!! ATCTGATTTAGAATTTATGG+TGG - chr2_3:1473428-1473447 Msa0270170:CDS 25.0%
! AACAAAACAGAGAAATTAAG+CGG + chr2_3:1473483-1473502 None:intergenic 25.0%
! TGTGTATATCTAAATATGCA+TGG - chr2_3:1473691-1473710 Msa0270170:intron 25.0%
TCCTACTTAGTACTTAACTA+GGG - chr2_3:1470057-1470076 Msa0270170:three_prime_UTR 30.0%
! TAGTACTTAACTAGGGTTTT+TGG - chr2_3:1470064-1470083 Msa0270170:three_prime_UTR 30.0%
TATTATTATTCCCAGATTGG+GGG + chr2_3:1470167-1470186 None:intergenic 30.0%
!!! CAAGTGTAACTTGTTTTTGT+AGG - chr2_3:1470790-1470809 Msa0270170:intron 30.0%
TTCAGAACTTAAGATCAAGA+AGG + chr2_3:1470935-1470954 None:intergenic 30.0%
! TAAATAGCTCTGTAATCCTA+CGG - chr2_3:1471015-1471034 Msa0270170:intron 30.0%
GAGTGTCTTAACATATGTAT+TGG - chr2_3:1471174-1471193 Msa0270170:intron 30.0%
!! GTATTGGATTAGGATTTTGA+AGG - chr2_3:1471190-1471209 Msa0270170:intron 30.0%
! GACAATCAGGATTTTCAATT+TGG - chr2_3:1471288-1471307 Msa0270170:CDS 30.0%
! GTATTGGATTAGGATTCTAA+GGG + chr2_3:1472038-1472057 None:intergenic 30.0%
! TGTATTGGATTAGGATTCTA+AGG + chr2_3:1472039-1472058 None:intergenic 30.0%
!!! TAGTTTTTTTTTATCACGCC+TGG + chr2_3:1472089-1472108 None:intergenic 30.0%
TCACAACTTCTGTTTATAGA+CGG - chr2_3:1472153-1472172 Msa0270170:intron 30.0%
AATGGGAATATCCAAAGAAT+GGG - chr2_3:1472213-1472232 Msa0270170:intron 30.0%
! TCACAGCAGTATAATTTTGT+TGG - chr2_3:1472430-1472449 Msa0270170:intron 30.0%
! TAATTTTGTTGGTCGAATTC+TGG - chr2_3:1472441-1472460 Msa0270170:intron 30.0%
! AATTTTGTTGGTCGAATTCT+GGG - chr2_3:1472442-1472461 Msa0270170:intron 30.0%
AGTTGTTACATCTTTCAACT+TGG - chr2_3:1472846-1472865 Msa0270170:intron 30.0%
AAATAAAAAAGCAGCAGGAT+GGG + chr2_3:1472889-1472908 None:intergenic 30.0%
ATGAGAAATAAAAAAGCAGC+AGG + chr2_3:1472894-1472913 None:intergenic 30.0%
GAAATACATCAGGAAAAATG+AGG + chr2_3:1472937-1472956 None:intergenic 30.0%
GTGAAAATAATCTATACCAC+AGG + chr2_3:1473124-1473143 None:intergenic 30.0%
TATGATCAATGGTACTTTGA+GGG - chr2_3:1473264-1473283 Msa0270170:intron 30.0%
ATGTCACCTTTCAATAGTAA+TGG - chr2_3:1473325-1473344 Msa0270170:CDS 30.0%
AGATTGACTGTTAACATACT+GGG + chr2_3:1473380-1473399 None:intergenic 30.0%
AAGATTGACTGTTAACATAC+TGG + chr2_3:1473381-1473400 None:intergenic 30.0%
GTCCTACTTAGTACTTAACT+AGG - chr2_3:1470056-1470075 Msa0270170:three_prime_UTR 35.0%
ACCCTAGTTAAGTACTAAGT+AGG + chr2_3:1470061-1470080 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG - chr2_3:1470111-1470130 Msa0270170:three_prime_UTR 35.0%
AGAAGAAGAAGGATAGAAGA+TGG - chr2_3:1470131-1470150 Msa0270170:three_prime_UTR 35.0%
GAAGAAGAAGGATAGAAGAT+GGG - chr2_3:1470132-1470151 Msa0270170:three_prime_UTR 35.0%
! ATTAAAGTACCTTTCGCGAT+CGG + chr2_3:1470325-1470344 None:intergenic 35.0%
TGATTTCCTGAGTTAAGAGT+CGG + chr2_3:1470525-1470544 None:intergenic 35.0%
! ACTCTTCTACTACTCCTTTT+AGG - chr2_3:1470596-1470615 Msa0270170:CDS 35.0%
TTCATCACCAAAAAACATCC+AGG - chr2_3:1470817-1470836 Msa0270170:intron 35.0%
!!! CTAGTATCCTGGATGTTTTT+TGG + chr2_3:1470827-1470846 None:intergenic 35.0%
!! CTTAAGTTCTGAACAAGTCT+TGG - chr2_3:1470942-1470961 Msa0270170:intron 35.0%
GTAGGATTACAGAGCTATTT+AGG + chr2_3:1471016-1471035 None:intergenic 35.0%
TACAGGATCTTTATAGCACT+AGG + chr2_3:1471044-1471063 None:intergenic 35.0%
GTGCTATAAAGATCCTGTAA+TGG - chr2_3:1471045-1471064 Msa0270170:intron 35.0%
ATAAAGATCCTGTAATGGCA+AGG - chr2_3:1471050-1471069 Msa0270170:intron 35.0%
! AGCTATTTGTTGCTAGACTT+TGG - chr2_3:1471129-1471148 Msa0270170:CDS 35.0%
! TTTTTGTGAGAGATAGAGAG+AGG - chr2_3:1471466-1471485 Msa0270170:intron 35.0%
! TTTTGTGAGAGATAGAGAGA+GGG - chr2_3:1471467-1471486 Msa0270170:intron 35.0%
GAGAAAATAGAGGAGTTAGA+GGG - chr2_3:1471512-1471531 Msa0270170:intron 35.0%
TGCATTGTGAGGAAAATTGA+TGG - chr2_3:1472110-1472129 Msa0270170:intron 35.0%
CACAACTTCTGTTTATAGAC+GGG - chr2_3:1472154-1472173 Msa0270170:intron 35.0%
ACAACTTCTGTTTATAGACG+GGG - chr2_3:1472155-1472174 Msa0270170:intron 35.0%
CAATGGGAATATCCAAAGAA+TGG - chr2_3:1472212-1472231 Msa0270170:intron 35.0%
CTGATAACTCTCTTCACTAT+AGG + chr2_3:1472294-1472313 None:intergenic 35.0%
CTATAGTGAAGAGAGTTATC+AGG - chr2_3:1472292-1472311 Msa0270170:intron 35.0%
CATTTGGATATTTGTCGACA+GGG + chr2_3:1472326-1472345 None:intergenic 35.0%
ACATTTGGATATTTGTCGAC+AGG + chr2_3:1472327-1472346 None:intergenic 35.0%
! TGATTCGGAGTGAAAAAACA+CGG + chr2_3:1472359-1472378 None:intergenic 35.0%
CTACAATGGTAAGAGCTTTA+TGG + chr2_3:1472615-1472634 None:intergenic 35.0%
TGTAGCAATTGCAAGGTAAA+AGG + chr2_3:1472673-1472692 None:intergenic 35.0%
ACCTTGCAATTGCTACATTT+AGG - chr2_3:1472676-1472695 Msa0270170:intron 35.0%
ACCTAAATGTAGCAATTGCA+AGG + chr2_3:1472680-1472699 None:intergenic 35.0%
TATCACTTTGTGCAAGTCAA+TGG + chr2_3:1472764-1472783 None:intergenic 35.0%
AATAAAAAAGCAGCAGGATG+GGG + chr2_3:1472888-1472907 None:intergenic 35.0%
GAAATAAAAAAGCAGCAGGA+TGG + chr2_3:1472890-1472909 None:intergenic 35.0%
ATACATCAGGAAAAATGAGG+CGG + chr2_3:1472934-1472953 None:intergenic 35.0%
TAGGAAAGGTGAAATACATC+AGG + chr2_3:1472947-1472966 None:intergenic 35.0%
GAGAAGCTTAAAGATAAACC+TGG - chr2_3:1472986-1473005 Msa0270170:CDS 35.0%
!!! AGAAAATCTTTTGAAGCCTG+TGG - chr2_3:1473105-1473124 Msa0270170:CDS 35.0%
! GAAAGACTAGCCCTAAAAAA+GGG + chr2_3:1473176-1473195 None:intergenic 35.0%
! AGAAAGACTAGCCCTAAAAA+AGG + chr2_3:1473177-1473196 None:intergenic 35.0%
CTATGATCAATGGTACTTTG+AGG - chr2_3:1473263-1473282 Msa0270170:intron 35.0%
ACATACTTGGACTCATACTA+GGG + chr2_3:1473309-1473328 None:intergenic 35.0%
CTATTGAAAGGTGACATACT+TGG + chr2_3:1473322-1473341 None:intergenic 35.0%
GATTGACTGTTAACATACTG+GGG + chr2_3:1473379-1473398 None:intergenic 35.0%
! AGATGGTCATAATCTAGCTT+GGG + chr2_3:1473412-1473431 None:intergenic 35.0%
TACGACAGTCAATATTCTAG+CGG + chr2_3:1473532-1473551 None:intergenic 35.0%
GTACAGTCTTAACTAAGTTG+CGG - chr2_3:1473565-1473584 Msa0270170:intron 35.0%
! CAAACTAGAAGTATGCTACT+AGG + chr2_3:1473597-1473616 None:intergenic 35.0%
!!! ATCGTGGTAGTTTTATGTAC+CGG - chr2_3:1473841-1473860 Msa0270170:five_prime_UTR 35.0%
CAAGGATCGAATTCGAACAA+AGG + chr2_3:1469932-1469951 None:intergenic 40.0%
! AATGATGGGAAAGTAAGGAG+AGG + chr2_3:1470354-1470373 None:intergenic 40.0%
TAGATATTTGGCCGAACTCT+TGG - chr2_3:1470450-1470469 Msa0270170:intron 40.0%
TTGGCTGAGAGACAAAAGTT+GGG - chr2_3:1470469-1470488 Msa0270170:intron 40.0%
TGTGGGAGAACTTGCAAAAA+GGG + chr2_3:1470496-1470515 None:intergenic 40.0%
TTGTGGGAGAACTTGCAAAA+AGG + chr2_3:1470497-1470516 None:intergenic 40.0%
TTAAGAGTCGGGTAGATTGT+GGG + chr2_3:1470513-1470532 None:intergenic 40.0%
GATTTCCTGAGTTAAGAGTC+GGG + chr2_3:1470524-1470543 None:intergenic 40.0%
GAAATCAGACGTATCTCATC+CGG - chr2_3:1470538-1470557 Msa0270170:CDS 40.0%
ATGTTCCATAATAAAGCCGC+TGG + chr2_3:1470566-1470585 None:intergenic 40.0%
AAAGGAGTAGTAGAAGAGTC+AGG + chr2_3:1470595-1470614 None:intergenic 40.0%
TGATAGGATGTTGAGGTAAG+GGG + chr2_3:1470624-1470643 None:intergenic 40.0%
GTGATAGGATGTTGAGGTAA+GGG + chr2_3:1470625-1470644 None:intergenic 40.0%
CAATGCATTACCTCTCTATG+GGG + chr2_3:1470670-1470689 None:intergenic 40.0%
GCAATGCATTACCTCTCTAT+GGG + chr2_3:1470671-1470690 None:intergenic 40.0%
TGCAATGCATTACCTCTCTA+TGG + chr2_3:1470672-1470691 None:intergenic 40.0%
ACAGCATACTTCTAGTATCC+TGG + chr2_3:1470838-1470857 None:intergenic 40.0%
GAACTTAAGATCAAGAAGGC+AGG + chr2_3:1470931-1470950 None:intergenic 40.0%
!! AAGTTCTGAACAAGTCTTGG+AGG - chr2_3:1470945-1470964 Msa0270170:intron 40.0%
TTATAGCACTAGGTTTCCGT+AGG + chr2_3:1471034-1471053 None:intergenic 40.0%
! AAATAGACCCACAATGGGTT+TGG + chr2_3:1471087-1471106 None:intergenic 40.0%
! ACCCATTGTGGGTCTATTTT+AGG - chr2_3:1471088-1471107 Msa0270170:CDS 40.0%
GCCTAAAATAGACCCACAAT+GGG + chr2_3:1471092-1471111 None:intergenic 40.0%
TGCCTAAAATAGACCCACAA+TGG + chr2_3:1471093-1471112 None:intergenic 40.0%
!! TTGCTAGACTTTGGCTCTTT+GGG - chr2_3:1471138-1471157 Msa0270170:CDS 40.0%
TTTGTGAGAGATAGAGAGAG+GGG - chr2_3:1471468-1471487 Msa0270170:intron 40.0%
GGAGAAAATAGAGGAGTTAG+AGG - chr2_3:1471511-1471530 Msa0270170:intron 40.0%
AAAAGAGATGAGAGAGGGAA+GGG - chr2_3:1471665-1471684 Msa0270170:intron 40.0%
GGAGAAGAGAGAAGGAATAA+GGG - chr2_3:1471686-1471705 Msa0270170:intron 40.0%
ATATTGCCCATGTGTGAGAA+GGG + chr2_3:1472065-1472084 None:intergenic 40.0%
TATATTGCCCATGTGTGAGA+AGG + chr2_3:1472066-1472085 None:intergenic 40.0%
! AGGAAAATTGATGGCAAGAG+AGG - chr2_3:1472119-1472138 Msa0270170:intron 40.0%
AATACCAATGTTCCCTATGC+AGG - chr2_3:1472188-1472207 Msa0270170:intron 40.0%
TATTCCCATTGTCCTGCATA+GGG + chr2_3:1472203-1472222 None:intergenic 40.0%
ATATTCCCATTGTCCTGCAT+AGG + chr2_3:1472204-1472223 None:intergenic 40.0%
CTTGAAAGGATCCCATTCTT+TGG + chr2_3:1472227-1472246 None:intergenic 40.0%
! ACACGGTTTGGACTTACATT+TGG + chr2_3:1472342-1472361 None:intergenic 40.0%
GTAAACCCTACATTCTGTCA+TGG + chr2_3:1472500-1472519 None:intergenic 40.0%
GAATGTAGGGTTTACATCAG+AGG - chr2_3:1472505-1472524 Msa0270170:intron 40.0%
CTCTGTGAAGGATTCGATTA+AGG - chr2_3:1472534-1472553 Msa0270170:intron 40.0%
!! TTCCGTGGTGGATTTATTGT+TGG - chr2_3:1472645-1472664 Msa0270170:intron 40.0%
TGCCAACAATAAATCCACCA+CGG + chr2_3:1472650-1472669 None:intergenic 40.0%
!! TCTTTAAGGTGCTCATAACC+AGG + chr2_3:1473007-1473026 None:intergenic 40.0%
ACAAGTGCAATGGCTCTTTA+AGG + chr2_3:1473021-1473040 None:intergenic 40.0%
TAAAGAGCCATTGCACTTGT+TGG - chr2_3:1473021-1473040 Msa0270170:CDS 40.0%
CGGGAATTGATTATATCCTC+AGG + chr2_3:1473061-1473080 None:intergenic 40.0%
GGATATAATCAATTCCCGCT+TGG - chr2_3:1473063-1473082 Msa0270170:CDS 40.0%
! CTTTCTAACACTTGGTAACC+TGG - chr2_3:1473191-1473210 Msa0270170:intron 40.0%
ACTACAAGAAGCAGCAATTG+AGG - chr2_3:1473233-1473252 Msa0270170:intron 40.0%
CTACAAGAAGCAGCAATTGA+GGG - chr2_3:1473234-1473253 Msa0270170:intron 40.0%
AGGGAGTTAGCTATGATCAA+TGG - chr2_3:1473253-1473272 Msa0270170:intron 40.0%
GACATACTTGGACTCATACT+AGG + chr2_3:1473310-1473329 None:intergenic 40.0%
CAGATGGTCATAATCTAGCT+TGG + chr2_3:1473413-1473432 None:intergenic 40.0%
GGTACATAAAACTACCACGA+TGG + chr2_3:1473842-1473861 None:intergenic 40.0%
GAAGAGAAGTGAGTGAGTGA+AGG + chr2_3:1469823-1469842 None:intergenic 45.0%
ATGAATGAATGGTGTGTGCG+TGG - chr2_3:1470033-1470052 Msa0270170:three_prime_UTR 45.0%
TGAATGAATGGTGTGTGCGT+GGG - chr2_3:1470034-1470053 Msa0270170:three_prime_UTR 45.0%
AAGGATAGAAGATGGGAGAG+TGG - chr2_3:1470139-1470158 Msa0270170:three_prime_UTR 45.0%
AGAACCTGATAGGAGAAGGA+GGG + chr2_3:1470302-1470321 None:intergenic 45.0%
TTGTCTCTCAGCCAAGAGTT+CGG + chr2_3:1470464-1470483 None:intergenic 45.0%
CTTGGCTGAGAGACAAAAGT+TGG - chr2_3:1470468-1470487 Msa0270170:intron 45.0%
GTTAAGAGTCGGGTAGATTG+TGG + chr2_3:1470514-1470533 None:intergenic 45.0%
ATCTACCCGACTCTTAACTC+AGG - chr2_3:1470516-1470535 Msa0270170:CDS 45.0%
GAGTAGTAGAAGAGTCAGGA+TGG + chr2_3:1470591-1470610 None:intergenic 45.0%
ATAGGATGTTGAGGTAAGGG+GGG + chr2_3:1470622-1470641 None:intergenic 45.0%
GATAGGATGTTGAGGTAAGG+GGG + chr2_3:1470623-1470642 None:intergenic 45.0%
GGTGATAGGATGTTGAGGTA+AGG + chr2_3:1470626-1470645 None:intergenic 45.0%
TACCTCAACATCCTATCACC+AGG - chr2_3:1470626-1470645 Msa0270170:intron 45.0%
AAATCCATAGGCCTGGTGAT+AGG + chr2_3:1470640-1470659 None:intergenic 45.0%
TGCATCACTGCTTCGTATAC+GGG + chr2_3:1470732-1470751 None:intergenic 45.0%
CTGCATCACTGCTTCGTATA+CGG + chr2_3:1470733-1470752 None:intergenic 45.0%
GTGTTGCGCTTAGAAGAACT+AGG - chr2_3:1470856-1470875 Msa0270170:intron 45.0%
TTTCGTGACCTTGCCATTAC+AGG + chr2_3:1471061-1471080 None:intergenic 45.0%
TGTAATGGCAAGGTCACGAA+AGG - chr2_3:1471060-1471079 Msa0270170:intron 45.0%
GTAATGGCAAGGTCACGAAA+GGG - chr2_3:1471061-1471080 Msa0270170:intron 45.0%
!! GTTGCTAGACTTTGGCTCTT+TGG - chr2_3:1471137-1471156 Msa0270170:CDS 45.0%
!! TGCTAGACTTTGGCTCTTTG+GGG - chr2_3:1471139-1471158 Msa0270170:CDS 45.0%
TTGTGAGAGATAGAGAGAGG+GGG - chr2_3:1471469-1471488 Msa0270170:intron 45.0%
GGAGAGAAGGGAGAAAATAG+AGG - chr2_3:1471502-1471521 Msa0270170:intron 45.0%
AGAGAGAGAGAGAGAGAGAA+GGG - chr2_3:1471601-1471620 Msa0270170:intron 45.0%
AGAAGAGAGACGAAGAGAGA+AGG - chr2_3:1471624-1471643 Msa0270170:intron 45.0%
GAAGAGAGACGAAGAGAGAA+GGG - chr2_3:1471625-1471644 Msa0270170:intron 45.0%
AGGGAGAAAAGAGATGAGAG+AGG - chr2_3:1471659-1471678 Msa0270170:intron 45.0%
GGGAGAAAAGAGATGAGAGA+GGG - chr2_3:1471660-1471679 Msa0270170:intron 45.0%
GAAAAGAGATGAGAGAGGGA+AGG - chr2_3:1471664-1471683 Msa0270170:intron 45.0%
GGGAGAAGAGAGAAGGAATA+AGG - chr2_3:1471685-1471704 Msa0270170:intron 45.0%
GAAGGGGGATGTATTGGATT+AGG + chr2_3:1472048-1472067 None:intergenic 45.0%
TATTGCCCATGTGTGAGAAG+GGG + chr2_3:1472064-1472083 None:intergenic 45.0%
TCACACATGGGCAATATACC+AGG - chr2_3:1472068-1472087 Msa0270170:intron 45.0%
TTGTCCTGCATAGGGAACAT+TGG + chr2_3:1472195-1472214 None:intergenic 45.0%
ATGTTCCCTATGCAGGACAA+TGG - chr2_3:1472195-1472214 Msa0270170:intron 45.0%
TGTTCCCTATGCAGGACAAT+GGG - chr2_3:1472196-1472215 Msa0270170:intron 45.0%
ATCCTTTCAAGCATCTCCAG+TGG - chr2_3:1472236-1472255 Msa0270170:intron 45.0%
TCCTTTCAAGCATCTCCAGT+GGG - chr2_3:1472237-1472256 Msa0270170:intron 45.0%
CTCTTCACTATAGGAGTCGT+CGG + chr2_3:1472285-1472304 None:intergenic 45.0%
CGGAGTGAAAAAACACGGTT+TGG + chr2_3:1472354-1472373 None:intergenic 45.0%
TGGAAGCCATGACAGAATGT+AGG - chr2_3:1472491-1472510 Msa0270170:intron 45.0%
GGAAGCCATGACAGAATGTA+GGG - chr2_3:1472492-1472511 Msa0270170:intron 45.0%
GGAACTGAAGGACACTACAA+TGG + chr2_3:1472629-1472648 None:intergenic 45.0%
TAAATCCACCACGGAACTGA+AGG + chr2_3:1472641-1472660 None:intergenic 45.0%
! TTTCTAGTACTGCCACAGCA+TGG + chr2_3:1473090-1473109 None:intergenic 45.0%
!!! ACTGCACCTCTCCCTTTTTT+AGG - chr2_3:1473162-1473181 Msa0270170:intron 45.0%
!!! CTGCACCTCTCCCTTTTTTA+GGG - chr2_3:1473163-1473182 Msa0270170:intron 45.0%
ACTAGCCCTAAAAAAGGGAG+AGG + chr2_3:1473171-1473190 None:intergenic 45.0%
!! GGGCTAGTCTTTCTAACACT+TGG - chr2_3:1473183-1473202 Msa0270170:intron 45.0%
ATCAAGTGATTCATCCTGCC+AGG + chr2_3:1473212-1473231 None:intergenic 45.0%
! GATCAATGGTACTTTGAGGG+AGG - chr2_3:1473267-1473286 Msa0270170:intron 45.0%
ATTTATGGTGGCCTTTCTGC+AGG - chr2_3:1473440-1473459 Msa0270170:CDS 45.0%
TTTATGGTGGCCTTTCTGCA+GGG - chr2_3:1473441-1473460 Msa0270170:CDS 45.0%
!!! ATTATTATTTTTATTAAACA+AGG + chr2_3:1469950-1469969 None:intergenic 5.0%
!! AATAATAATAATAAAATGAT+GGG + chr2_3:1470368-1470387 None:intergenic 5.0%
!! TAATAATAATAATAAAATGA+TGG + chr2_3:1470369-1470388 None:intergenic 5.0%
!! AAAAAAGTAAAAAAAAAAAA+AGG + chr2_3:1473623-1473642 None:intergenic 5.0%
TCCATGTCCATGACCATGTG+GGG + chr2_3:1470265-1470284 None:intergenic 50.0%
GTCCATGTCCATGACCATGT+GGG + chr2_3:1470266-1470285 None:intergenic 50.0%
TGTCCATGTCCATGACCATG+TGG + chr2_3:1470267-1470286 None:intergenic 50.0%
CATGGTCATGGACATGGACA+TGG - chr2_3:1470267-1470286 Msa0270170:CDS 50.0%
CATGGACATGGACATGGACA+TGG - chr2_3:1470273-1470292 Msa0270170:CDS 50.0%
GAGAACCTGATAGGAGAAGG+AGG + chr2_3:1470303-1470322 None:intergenic 50.0%
TCGGAGAACCTGATAGGAGA+AGG + chr2_3:1470306-1470325 None:intergenic 50.0%
CATAATAAAGCCGCTGGCAC+CGG + chr2_3:1470560-1470579 None:intergenic 50.0%
ACATCCTATCACCAGGCCTA+TGG - chr2_3:1470633-1470652 Msa0270170:intron 50.0%
CGTATACGAAGCAGTGATGC+AGG - chr2_3:1470731-1470750 Msa0270170:intron 50.0%
GCAGTGATGCAGGTCTTCTA+AGG - chr2_3:1470741-1470760 Msa0270170:intron 50.0%
GAAAGGGCCAAACCCATTGT+GGG - chr2_3:1471077-1471096 Msa0270170:CDS 50.0%
GGAAGAGAGGAAGGAGAGAA+GGG - chr2_3:1471490-1471509 Msa0270170:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr2_3:1471535-1471554 Msa0270170:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+AGG - chr2_3:1471534-1471553 Msa0270170:intron 50.0%
AAGAGAGAAGGGAGAGAGAG+AGG - chr2_3:1471636-1471655 Msa0270170:intron 50.0%
GTGTGAGAAGGGGGATGTAT+TGG + chr2_3:1472054-1472073 None:intergenic 50.0%
TACATCCCCCTTCTCACACA+TGG - chr2_3:1472055-1472074 Msa0270170:intron 50.0%
ACATCCCCCTTCTCACACAT+GGG - chr2_3:1472056-1472075 Msa0270170:intron 50.0%
ATTGCCCATGTGTGAGAAGG+GGG + chr2_3:1472063-1472082 None:intergenic 50.0%
ACCCACTGGAGATGCTTGAA+AGG + chr2_3:1472241-1472260 None:intergenic 50.0%
TTCAAGCATCTCCAGTGGGT+TGG - chr2_3:1472241-1472260 Msa0270170:intron 50.0%
CGGGAACTCGTTGAAAAGAG+TGG - chr2_3:1472471-1472490 Msa0270170:intron 50.0%
AGGGTTTACATCAGAGGCTG+TGG - chr2_3:1472511-1472530 Msa0270170:intron 50.0%
TGTAGTGTCCTTCAGTTCCG+TGG - chr2_3:1472630-1472649 Msa0270170:intron 50.0%
! AGAGCCATTGCACTTGTTGG+TGG - chr2_3:1473024-1473043 Msa0270170:CDS 50.0%
! CTAACACTTGGTAACCTGGC+AGG - chr2_3:1473195-1473214 Msa0270170:intron 50.0%
CTCATACTAGGGCTCATGCT+TGG + chr2_3:1473298-1473317 None:intergenic 50.0%
GGAATGAAACGTGCCAAGAC+AGG - chr2_3:1473346-1473365 Msa0270170:CDS 50.0%
GAGTTTGCAAGTGACCATCG+TGG - chr2_3:1473825-1473844 Msa0270170:five_prime_UTR 50.0%
! TGTGGCGTGGTGATTGACTC+TGG - chr2_3:1469785-1469804 Msa0270170:three_prime_UTR 55.0%
! GGTGATTGACTCTGGTGTCG+TGG - chr2_3:1469793-1469812 Msa0270170:three_prime_UTR 55.0%
GAGAGTGGATCCCCCAATCT+GGG - chr2_3:1470154-1470173 Msa0270170:three_prime_UTR 55.0%
! CAGGAGCATGAGGAGGGAAT+TGG + chr2_3:1470215-1470234 None:intergenic 55.0%
CCATGTCCATGACCATGTGG+GGG + chr2_3:1470264-1470283 None:intergenic 55.0%
GACTCCCTCCTTCTCCTATC+AGG - chr2_3:1470295-1470314 Msa0270170:CDS 55.0%
TCGCGATCGGAGAACCTGAT+AGG + chr2_3:1470312-1470331 None:intergenic 55.0%
TCAGGTTCTCCGATCGCGAA+AGG - chr2_3:1470313-1470332 Msa0270170:CDS 55.0%
!! CGGTGCCAGCGGCTTTATTA+TGG - chr2_3:1470558-1470577 Msa0270170:CDS 55.0%
TGAGGTAAGGGGGGCCTAAA+AGG + chr2_3:1470613-1470632 None:intergenic 55.0%
GGCCTGGTGATAGGATGTTG+AGG + chr2_3:1470631-1470650 None:intergenic 55.0%
CCAGTCGAAATCCATAGGCC+TGG + chr2_3:1470647-1470666 None:intergenic 55.0%
CCAGGCCTATGGATTTCGAC+TGG - chr2_3:1470644-1470663 Msa0270170:intron 55.0%
TGGGGCCAGTCGAAATCCAT+AGG + chr2_3:1470652-1470671 None:intergenic 55.0%
! TTTCGACTGGCCCCATAGAG+AGG - chr2_3:1470657-1470676 Msa0270170:intron 55.0%
CGAAAGGGCCAAACCCATTG+TGG - chr2_3:1471076-1471095 Msa0270170:CDS 55.0%
GATAGAGAGAGGGGGAAGAG+AGG - chr2_3:1471477-1471496 Msa0270170:intron 55.0%
GGGAAGAGAGGAAGGAGAGA+AGG - chr2_3:1471489-1471508 Msa0270170:intron 55.0%
AGAGAAGGGAGAGAGAGAGG+AGG - chr2_3:1471639-1471658 Msa0270170:intron 55.0%
GAGAAGGGAGAGAGAGAGGA+GGG - chr2_3:1471640-1471659 Msa0270170:intron 55.0%
GAGGGAAGGGAGAAGAGAGA+AGG - chr2_3:1471678-1471697 Msa0270170:intron 55.0%
!! CATCTCCAGTGGGTTGGCAT+GGG - chr2_3:1472247-1472266 Msa0270170:intron 55.0%
! CTTTTCAACGAGTTCCCGCG+AGG + chr2_3:1472469-1472488 None:intergenic 55.0%
AGTGTCCTTCAGTTCCGTGG+TGG - chr2_3:1472633-1472652 Msa0270170:intron 55.0%
! GCCATTGCACTTGTTGGTGG+AGG - chr2_3:1473027-1473046 Msa0270170:CDS 55.0%
GCCTCCACCAACAAGTGCAA+TGG + chr2_3:1473031-1473050 None:intergenic 55.0%
CTGGGGTCATCTTCCTGTCT+TGG + chr2_3:1473362-1473381 None:intergenic 55.0%
TCTCTTGGCTTCGCTGCGTG+TGG - chr2_3:1469752-1469771 Msa0270170:three_prime_UTR 60.0%
GCTTCGCTGCGTGTGGAGTT+TGG - chr2_3:1469759-1469778 Msa0270170:three_prime_UTR 60.0%
GCGTGTGGAGTTTGGCAGTG+TGG - chr2_3:1469767-1469786 Msa0270170:three_prime_UTR 60.0%
TGGAGTTTGGCAGTGTGGCG+TGG - chr2_3:1469772-1469791 Msa0270170:three_prime_UTR 60.0%
GGAGAGTGGATCCCCCAATC+TGG - chr2_3:1470153-1470172 Msa0270170:three_prime_UTR 60.0%
ATGAGGAGGAGGAGGAGGAG+CGG + chr2_3:1470241-1470260 None:intergenic 60.0%
TGACCATGTGGGGGATGAGG+AGG + chr2_3:1470255-1470274 None:intergenic 60.0%
CCATGACCATGTGGGGGATG+AGG + chr2_3:1470258-1470277 None:intergenic 60.0%
CCTCATCCCCCACATGGTCA+TGG - chr2_3:1470255-1470274 Msa0270170:CDS 60.0%
CCCCCACATGGTCATGGACA+TGG - chr2_3:1470261-1470280 Msa0270170:CDS 60.0%
! CGTATCTCATCCGGTGCCAG+CGG - chr2_3:1470547-1470566 Msa0270170:CDS 60.0%
GAGAGAGGGGGAAGAGAGGA+AGG - chr2_3:1471481-1471500 Msa0270170:intron 60.0%
!! GCATCTCCAGTGGGTTGGCA+TGG - chr2_3:1472246-1472265 Msa0270170:intron 60.0%
GGAGTCGTCGGAACTCCTTG+TGG + chr2_3:1472273-1472292 None:intergenic 60.0%
!! GGTCGAATTCTGGGACCTCG+CGG - chr2_3:1472451-1472470 Msa0270170:intron 60.0%
!! GTCGAATTCTGGGACCTCGC+GGG - chr2_3:1472452-1472471 Msa0270170:intron 60.0%
! CAGAGGCTGTGGCTCTGTGA+AGG - chr2_3:1472522-1472541 Msa0270170:intron 60.0%
GGTGGAGGCAGAGTTTCCTG+AGG - chr2_3:1473042-1473061 Msa0270170:CDS 60.0%
TTCCCGCTTGGACCATGCTG+TGG - chr2_3:1473075-1473094 Msa0270170:CDS 60.0%
TGCCACAGCATGGTCCAAGC+GGG + chr2_3:1473080-1473099 None:intergenic 60.0%
CTGCCACAGCATGGTCCAAG+CGG + chr2_3:1473081-1473100 None:intergenic 60.0%
CATCGACCAGCCCTGCAGAA+AGG + chr2_3:1473454-1473473 None:intergenic 60.0%
!! CTTTCTGCAGGGCTGGTCGA+TGG - chr2_3:1473452-1473471 Msa0270170:CDS 60.0%
! CGGGAGCAGGAGCATGAGGA+GGG + chr2_3:1470221-1470240 None:intergenic 65.0%
TGAGGAGGAGGAGGAGGAGC+GGG + chr2_3:1470240-1470259 None:intergenic 65.0%
TGTGGGGGATGAGGAGGAGG+AGG + chr2_3:1470249-1470268 None:intergenic 65.0%
CCATGTGGGGGATGAGGAGG+AGG + chr2_3:1470252-1470271 None:intergenic 65.0%
CCTCCTCCTCATCCCCCACA+TGG - chr2_3:1470249-1470268 Msa0270170:CDS 65.0%
TGTGGCCCATGCCAACCCAC+TGG + chr2_3:1472255-1472274 None:intergenic 65.0%
!! GTGGGTTGGCATGGGCCACA+AGG - chr2_3:1472255-1472274 Msa0270170:intron 65.0%
TGGTGGCCTTTCTGCAGGGC+TGG - chr2_3:1473445-1473464 Msa0270170:CDS 65.0%
! GCGGGAGCAGGAGCATGAGG+AGG + chr2_3:1470222-1470241 None:intergenic 70.0%
! GGAGCGGGAGCAGGAGCATG+AGG + chr2_3:1470225-1470244 None:intergenic 70.0%
GGGGGATGAGGAGGAGGAGG+AGG + chr2_3:1470246-1470265 None:intergenic 70.0%
GGAGGAGGAGGAGCGGGAGC+AGG + chr2_3:1470234-1470253 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 1469747 1473876 1469747 ID=Msa0270170;Name=Msa0270170
chr2_3 mRNA 1469747 1473876 1469747 ID=Msa0270170-mRNA-1;Parent=Msa0270170;Name=Msa0270170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=137|1|1|1|0.83|0.71|7|501|322
chr2_3 exon 1469747 1470406 1469747 ID=Msa0270170-mRNA-1:exon:632;Parent=Msa0270170-mRNA-1
chr2_3 exon 1470497 1470640 1470497 ID=Msa0270170-mRNA-1:exon:631;Parent=Msa0270170-mRNA-1
chr2_3 exon 1471068 1471187 1471068 ID=Msa0270170-mRNA-1:exon:630;Parent=Msa0270170-mRNA-1
chr2_3 exon 1471279 1471413 1471279 ID=Msa0270170-mRNA-1:exon:629;Parent=Msa0270170-mRNA-1
chr2_3 exon 1472945 1473170 1472945 ID=Msa0270170-mRNA-1:exon:628;Parent=Msa0270170-mRNA-1
chr2_3 exon 1473289 1473511 1473289 ID=Msa0270170-mRNA-1:exon:627;Parent=Msa0270170-mRNA-1
chr2_3 exon 1473778 1473876 1473778 ID=Msa0270170-mRNA-1:exon:626;Parent=Msa0270170-mRNA-1
chr2_3 five_prime_UTR 1473778 1473876 1473778 ID=Msa0270170-mRNA-1:five_prime_utr;Parent=Msa0270170-mRNA-1
chr2_3 five_prime_UTR 1473474 1473511 1473474 ID=Msa0270170-mRNA-1:five_prime_utr;Parent=Msa0270170-mRNA-1
chr2_3 CDS 1473289 1473473 1473289 ID=Msa0270170-mRNA-1:cds;Parent=Msa0270170-mRNA-1
chr2_3 CDS 1472945 1473170 1472945 ID=Msa0270170-mRNA-1:cds;Parent=Msa0270170-mRNA-1
chr2_3 CDS 1471279 1471413 1471279 ID=Msa0270170-mRNA-1:cds;Parent=Msa0270170-mRNA-1
chr2_3 CDS 1471068 1471187 1471068 ID=Msa0270170-mRNA-1:cds;Parent=Msa0270170-mRNA-1
chr2_3 CDS 1470497 1470640 1470497 ID=Msa0270170-mRNA-1:cds;Parent=Msa0270170-mRNA-1
chr2_3 CDS 1470248 1470406 1470248 ID=Msa0270170-mRNA-1:cds;Parent=Msa0270170-mRNA-1
chr2_3 three_prime_UTR 1469747 1470247 1469747 ID=Msa0270170-mRNA-1:three_prime_utr;Parent=Msa0270170-mRNA-1
Gene Sequence

>Msa0270170

ATGGGAGAGTGGATCCCCCAATCTGGGAATAATAATAATAATAATAATAATGGTAGTTATTTCCAATTCCCTCCTCATGCTCCTGCTCCCGCTCCTCCTCCTCCTCCTCATCCCCCACATGGTCATGGACATGGACATGGACATGGACTCCCTCCTTCTCCTATCAGGTTCTCCGATCGCGAAAGATATTTGGCCGAACTCTTGGCTGAGAGACAAAAGTTGGGACCCTTTTTGCAAGTTCTCCCACAATCTACCCGACTCTTAACTCAGGAAATCAGACGTATCTCATCCGGTGCCAGCGGCTTTATTATGGAACATGACCATCCTGACTCTTCTACTACTCCTTTTAGGCCCCCCTTACCTCAACATCCTATCACCAGGCCTATGGATTTCGACTGGCCCCATAGAGAGGACAATGGGAATATCCAAAGAATGGGATCCTTTCAAGCATCTCCAGTGGGTTGGCATGGGCCACAAGGAGTTCCGACGACTCCTATAGTGAAGAGAGTTATCAGGCTTGATGTCCCTGTCGACAAATATCCAAATCAGTATAATTTTGTTGGTCGAATTCTGGGACCTCGCGGGAACTCGTTGAAAAGAGTGGAAGCCATGACAGAATGTAGGGTTTACATCAGAGGCTGTGGCTCTGTGAAGGATTCGATTAAGGAAGAGAAGCTTAAAGATAAACCTGGTTATGAGCACCTTAAAGAGCCATTGCACTTGTTGGTGGAGGCAGAGTTTCCTGAGGATATAATCAATTCCCGCTTGGACCATGCTGTGGCAGTACTAGAAAATCTTTTGAAGCCTGTGGATGAATCACTTGATCACTACAAGAAGCAGCAATTGAGGGAGTTAGCTATGATCAATGGTACTTTGAGGGAGGAAAGTCCAAGCATGAGCCCTAGTATGAGTCCAAGTATGTCACCTTTCAATAGTAATGGAATGAAACGTGCCAAGACAGGAAGATGA
Protein sequence

>Msa0270170

MGEWIPQSGNNNNNNNNGSYFQFPPHAPAPAPPPPPHPPHGHGHGHGHGLPPSPIRFSDRERYLAELLAERQKLGPFLQVLPQSTRLLTQEIRRISSGASGFIMEHDHPDSSTTPFRPPLPQHPITRPMDFDWPHREDNGNIQRMGSFQASPVGWHGPQGVPTTPIVKRVIRLDVPVDKYPNQYNFVGRILGPRGNSLKRVEAMTECRVYIRGCGSVKDSIKEEKLKDKPGYEHLKEPLHLLVEAEFPEDIINSRLDHAVAVLENLLKPVDESLDHYKKQQLRELAMINGTLREESPSMSPSMSPSMSPFNSNGMKRAKTGR*