AlfalfaGEDB | Msa0321060

M. sativa cultivar zhongmu-4 / Msa0321060

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF00856.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0321060	XP_003594872.2	97.708	480	11	0	1	480	1	480	0.0	980

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0321060	sp\|Q84JF5\|PTA14_ARATH	69.136	486	141	6	1	480	1	483	0.0	689

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0321060	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001540	Msa0321060	0.803957	2.720283e-49	-8.615850e-47
Msa0282070	Msa0321060	0.869653	2.634547e-66	-8.615850e-47
Msa0282090	Msa0321060	0.869446	3.078463e-66	-8.615850e-47
Msa0321060	Msa0379450	0.809687	1.673045e-50	-8.615850e-47
Msa0321060	Msa0419030	0.811045	8.519633e-51	-8.615850e-47
Msa0321060	Msa0510540	0.805474	1.311648e-49	-8.615850e-47
Msa0321060	Msa0969050	0.805348	1.394115e-49	-8.615850e-47
Msa0321060	Msa1235140	0.800731	1.256078e-48	-8.615850e-47
Msa0321060	Msa1375600	0.809213	2.114226e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0321060	MtrunA17_Chr2g0296791	97.708	480	11	0	1	480	1	480	0.0	980
Msa0321060	MtrunA17_Chr4g0042701	24.883	426	244	18	95	479	80	470	5.12e-15	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0321060	AT4G20130.1	69.136	486	141	6	1	480	1	483	689
Msa0321060	AT4G20130.3	73.151	365	97	1	116	480	1	364	579
Msa0321060	AT4G20130.2	73.151	365	97	1	116	480	1	364	579

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Find 106 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACGAGCGTTAGAATTC+TGG	0.322289	2_4:-22070300	Msa0321060:CDS
AACAATTTGGCTCAAACGAA+TGG	0.492685	2_4:+22069844	None:intergenic
AACCAATGAACATGTAATGA+TGG	0.491236	2_4:+22066615	None:intergenic
AAGAAGCTTGTTTGATAAAG+TGG	0.337875	2_4:+22072084	None:intergenic
AAGCAAGACCAGAAACTGTT+AGG	0.413582	2_4:-22067540	Msa0321060:intron
AAGGAAGGGCCAAATGGTTT+TGG	0.316532	2_4:-22071091	Msa0321060:CDS
AATATGCTGATTCCTTATGC+TGG	0.547916	2_4:-22070042	Msa0321060:intron
AATCCCAAGTGAAGAAAGGA+AGG	0.592614	2_4:-22067622	Msa0321060:CDS
AATCCTATCTTGTAGAAATC+AGG	0.398262	2_4:+22071148	None:intergenic
AATCTTTGTGGCAGACAGAT+TGG	0.384792	2_4:-22070632	Msa0321060:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACTTTCTGTACAGTTCAA+AGG	-	chr2_4:22066801-22066820	Msa0321060:CDS	30.0%
AAACAAACAAGGTGCAAAAT+GGG	+	chr2_4:22066975-22066994	None:intergenic	30.0%
TAAACAAACAAGGTGCAAAA+TGG	+	chr2_4:22066976-22066995	None:intergenic	30.0%
ATTGGTTGAAAGTAACAACT+AGG	-	chr2_4:22067024-22067043	Msa0321060:CDS	30.0%
GCAATATCTTCATTCCTATA+AGG	-	chr2_4:22067459-22067478	Msa0321060:intron	30.0%
AATCCTATCTTGTAGAAATC+AGG	+	chr2_4:22067618-22067637	None:intergenic	30.0%
ATCAAATATTGGATGACCAA+GGG	+	chr2_4:22067917-22067936	None:intergenic	30.0%
TATCAAATATTGGATGACCA+AGG	+	chr2_4:22067918-22067937	None:intergenic	30.0%
AGTCAAATGAAAACAAGAGA+AGG	+	chr2_4:22068174-22068193	None:intergenic	30.0%
TTCTTATAAATGCTGGACAA+CGG	-	chr2_4:22068978-22068997	Msa0321060:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	22066620	22072165	22066620	ID=Msa0321060;Name=Msa0321060
chr2_4	mRNA	22066620	22072165	22066620	ID=Msa0321060-mRNA-1;Parent=Msa0321060;Name=Msa0321060-mRNA-1;_AED=0.10;_eAED=0.10;_QI=44\|1\|1\|1\|1\|1\|13\|163\|480
chr2_4	exon	22066620	22066861	22066620	ID=Msa0321060-mRNA-1:exon:8081;Parent=Msa0321060-mRNA-1
chr2_4	exon	22067006	22067048	22067006	ID=Msa0321060-mRNA-1:exon:8080;Parent=Msa0321060-mRNA-1
chr2_4	exon	22067541	22067738	22067541	ID=Msa0321060-mRNA-1:exon:8079;Parent=Msa0321060-mRNA-1
chr2_4	exon	22067838	22067943	22067838	ID=Msa0321060-mRNA-1:exon:8078;Parent=Msa0321060-mRNA-1
chr2_4	exon	22068358	22068429	22068358	ID=Msa0321060-mRNA-1:exon:8077;Parent=Msa0321060-mRNA-1
chr2_4	exon	22069767	22069876	22069767	ID=Msa0321060-mRNA-1:exon:8076;Parent=Msa0321060-mRNA-1
chr2_4	exon	22070043	22070193	22070043	ID=Msa0321060-mRNA-1:exon:8075;Parent=Msa0321060-mRNA-1
chr2_4	exon	22070288	22070377	22070288	ID=Msa0321060-mRNA-1:exon:8074;Parent=Msa0321060-mRNA-1
chr2_4	exon	22070512	22070640	22070512	ID=Msa0321060-mRNA-1:exon:8073;Parent=Msa0321060-mRNA-1
chr2_4	exon	22070825	22070950	22070825	ID=Msa0321060-mRNA-1:exon:8072;Parent=Msa0321060-mRNA-1
chr2_4	exon	22071048	22071185	22071048	ID=Msa0321060-mRNA-1:exon:8071;Parent=Msa0321060-mRNA-1
chr2_4	exon	22071820	22071969	22071820	ID=Msa0321060-mRNA-1:exon:8070;Parent=Msa0321060-mRNA-1
chr2_4	exon	22072071	22072165	22072071	ID=Msa0321060-mRNA-1:exon:8069;Parent=Msa0321060-mRNA-1
chr2_4	five_prime_UTR	22072122	22072165	22072122	ID=Msa0321060-mRNA-1:five_prime_utr;Parent=Msa0321060-mRNA-1
chr2_4	CDS	22072071	22072121	22072071	ID=Msa0321060-mRNA-1:cds;Parent=Msa0321060-mRNA-1
chr2_4	CDS	22071820	22071969	22071820	ID=Msa0321060-mRNA-1:cds;Parent=Msa0321060-mRNA-1
chr2_4	CDS	22071048	22071185	22071048	ID=Msa0321060-mRNA-1:cds;Parent=Msa0321060-mRNA-1
chr2_4	CDS	22070825	22070950	22070825	ID=Msa0321060-mRNA-1:cds;Parent=Msa0321060-mRNA-1
chr2_4	CDS	22070512	22070640	22070512	ID=Msa0321060-mRNA-1:cds;Parent=Msa0321060-mRNA-1
chr2_4	CDS	22070288	22070377	22070288	ID=Msa0321060-mRNA-1:cds;Parent=Msa0321060-mRNA-1
chr2_4	CDS	22070043	22070193	22070043	ID=Msa0321060-mRNA-1:cds;Parent=Msa0321060-mRNA-1
chr2_4	CDS	22069767	22069876	22069767	ID=Msa0321060-mRNA-1:cds;Parent=Msa0321060-mRNA-1
chr2_4	CDS	22068358	22068429	22068358	ID=Msa0321060-mRNA-1:cds;Parent=Msa0321060-mRNA-1
chr2_4	CDS	22067838	22067943	22067838	ID=Msa0321060-mRNA-1:cds;Parent=Msa0321060-mRNA-1
chr2_4	CDS	22067541	22067738	22067541	ID=Msa0321060-mRNA-1:cds;Parent=Msa0321060-mRNA-1
chr2_4	CDS	22067006	22067048	22067006	ID=Msa0321060-mRNA-1:cds;Parent=Msa0321060-mRNA-1
chr2_4	CDS	22066783	22066861	22066783	ID=Msa0321060-mRNA-1:cds;Parent=Msa0321060-mRNA-1
chr2_4	three_prime_UTR	22066620	22066782	22066620	ID=Msa0321060-mRNA-1:three_prime_utr;Parent=Msa0321060-mRNA-1

Gene Sequence

>Msa0321060

ATGGCTTCTTCTTTTCCACTTTATCAAACAAGCTTCTTCTCAAAAACCCAGTTCAAAGGTTTGCGCCATGGATATTTGTGGCGACCCACTTACTCGTTTGGTTTTTGTGCTGAAAACAAAGTACAACCTGTTAAAGCTTCTGTTGAAACTGCCCCATTTCCCTTGTTTCAGCCTCCTAAAGATGATGAAACAGCTTCTGAGTTGGAGCCTGTAGATCCTGATTTCTACAAGATAGGATTCGTCCGAAGTATGCGAGCTTATGGAGTTGATTTTAAGGAAGGGCCAAATGGTTTTGGTGTATATGCTTCTAAAGATGTCGAACCTCTTCGCCGACCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGCTAACCATAAGCAAGAAATTACCATGGATGTTTTTCCCTGATATAATTCCCCTTGGTCATCCAATATTTGATATTATCAACTCAACAAATCCAGAGACAGATTGGGATTTACGATTAGTATGCCTTCTCTTGTTTTCATTTGACTGCAAAGACAACTTTTGGCAGTATTACGGCGATTTCTTACCCAGTGCAGATGAAAGTACTAGCTTACTTCTAGCTACAGAGGAGGAACTTTTGGAGCTGCAGGATCCCGATCTTGCTTCTACAATGAGAGTTCAGCAACAACGAGCGTTAGAATTCTGGGAGAAGAACTGGCATAGTGGTGCACCGCTCAAAGTAAAACGTCTTGCTCGTGATCCTCAAAGGTTCATGTGGGCAGTAGGAATTGCACAGTCACGATGTATCAACATGCAAATGAGAATGTGTGCACTAACTCAACAAGCGAATATGCTGATTCCTTATGCTGATATGCTGAACCATTCGTTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAACGGATAAGAAAGGGAGATGAGATGACAGTTGATTACATGAGCGCACAGAAGAACGACATGTTAATGCAAAGATACGGATTTTCATCGCCAGTGAATCCTTGGGATGTGATCAAATTCTCAGGCAATGCACGAATCCATTTGGATTCTTTCTTGTCAGTCTTCAACATATCTGGCCTTCCTGAAGAGTATTATCGTAACGAAGTTCTATCGAGCACTGGAGATACTTTTGTTGATGGAGCTGTCATAGCTGCAGCACGAACATTGCCAACATGGTCAGATGGAGATGTACCTCCAATCCCAAGTGAAGAAAGGAAGGCTGCGAAAGCATTACAACAAGAGTGCAAACAAATGCTTGCAGAATTCGCTACCACCTCTAAGCAAGACCAGAAACTGTTAGATTCATCACCCGAAGCTACGAGAACTCTTGAAGCTGCAATAAAGTATAGATTGCACAGAAAATTGCTAATGGAAAAGGTTATCCTAGCATTGGAGATCTATCAAGAGCAAATACTATTCTGA

Protein sequence

>Msa0321060

MASSFPLYQTSFFSKTQFKGLRHGYLWRPTYSFGFCAENKVQPVKASVETAPFPLFQPPKDDETASELEPVDPDFYKIGFVRSMRAYGVDFKEGPNGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPLGHPIFDIINSTNPETDWDLRLVCLLLFSFDCKDNFWQYYGDFLPSADESTSLLLATEEELLELQDPDLASTMRVQQQRALEFWEKNWHSGAPLKVKRLARDPQRFMWAVGIAQSRCINMQMRMCALTQQANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQRIRKGDEMTVDYMSAQKNDMLMQRYGFSSPVNPWDVIKFSGNARIHLDSFLSVFNISGLPEEYYRNEVLSSTGDTFVDGAVIAAARTLPTWSDGDVPPIPSEERKAAKALQQECKQMLAEFATTSKQDQKLLDSSPEATRTLEAAIKYRLHRKLLMEKVILALEIYQEQILF*