AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1375600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375600 MtrunA17_Chr3g0145921 96.167 574 14 4 1 568 1 572 0.0 1127
Msa1375600 MtrunA17_Chr7g0264491 35.641 390 245 2 181 565 164 552 1.63e-76 252
Msa1375600 MtrunA17_Chr1g0180881 34.752 423 264 6 150 565 139 556 1.35e-74 247
Msa1375600 MtrunA17_Chr1g0146481 31.008 387 247 5 188 566 173 547 1.72e-59 207
Msa1375600 MtrunA17_Chr3g0090001 32.558 301 198 1 267 567 108 403 1.05e-46 168
Msa1375600 MtrunA17_Chr4g0021031 31.475 305 199 6 270 567 201 502 2.02e-42 159
Msa1375600 MtrunA17_Chr3g0126401 29.191 346 217 8 242 567 177 514 2.26e-32 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1375600 AT1G08540.1 56.902 594 200 12 6 568 2 570 0.0 588
Msa1375600 AT2G36990.1 37.640 356 221 1 210 565 188 542 9.74e-78 256
Msa1375600 AT3G53920.1 34.405 311 198 2 257 566 264 569 3.39e-61 212
Msa1375600 AT5G13730.1 33.882 304 188 2 270 568 122 417 4.13e-52 184
Msa1375600 AT1G64860.1 29.775 356 228 9 220 567 159 500 1.03e-38 149
Msa1375600 AT5G24120.1 30.233 301 205 3 270 567 219 517 2.21e-37 145
Msa1375600 AT5G24120.3 30.233 301 205 3 270 567 219 517 2.21e-37 145
Msa1375600 AT5G24120.2 30.233 301 205 3 270 567 219 517 2.21e-37 145
Msa1375600 AT1G64860.2 29.677 310 197 8 220 521 159 455 5.10e-31 127
Msa1375600 AT3G53920.2 32.895 152 97 1 257 408 264 410 3.52e-28 117

Find 157 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCTTCTTCTCTTCTCTTC+TGG 0.135700 tig0019730:+42192 None:intergenic
TCTAGAGATCTGGGAGCTTT+TGG 0.189205 tig0019730:+39247 None:intergenic
GCCAGAAGAGTCAGAGCTTC+TGG 0.195456 tig0019730:-41365 Msa1375600:CDS
CTAAGAAAACGTTTGAATTA+TGG 0.201254 tig0019730:-40471 Msa1375600:CDS
CGCTTCTTCTCTTCTCTTCT+GGG 0.212244 tig0019730:+42193 None:intergenic
TCTTCGGCTGTTTCAGCTTC+AGG 0.261013 tig0019730:+39077 None:intergenic
GTGTCTTGTAATTGTTGTTT+TGG 0.271370 tig0019730:+41907 None:intergenic
GAGAGAAACAGGTGATTAAA+TGG 0.275402 tig0019730:-38992 Msa1375600:CDS
CTGAAAATTTACTTCTCAAA+TGG 0.275681 tig0019730:-41598 Msa1375600:CDS
ATCAGTTGCTAAGAATTATC+AGG 0.278584 tig0019730:-40400 Msa1375600:CDS
CCCAGAAGCTCTGACTCTTC+TGG 0.279014 tig0019730:+41364 None:intergenic
AAACAGTTGTACAGTGAAAA+TGG 0.280971 tig0019730:-39346 Msa1375600:CDS
GATAATGATGTTTAAAATAG+AGG 0.293318 tig0019730:-38569 Msa1375600:three_prime_UTR
AACTTTCTGTTCTAGAGATC+TGG 0.306670 tig0019730:+39237 None:intergenic
TATTGAAGTTAGCTTATTAC+AGG 0.306792 tig0019730:-38800 Msa1375600:three_prime_UTR
CATTAAGCAGTTCATGAAAA+AGG 0.308002 tig0019730:-39048 Msa1375600:CDS
CAGGTGATTAAATGGAGATT+TGG 0.320492 tig0019730:-38984 Msa1375600:CDS
GAAGAAGTTGCCGAAGCAAC+TGG 0.327598 tig0019730:-39307 Msa1375600:CDS
AGAGAAGTATGATGCTTCTA+AGG 0.329199 tig0019730:-39974 Msa1375600:CDS
TTCAGAGAACTTAATTTCTT+CGG 0.359443 tig0019730:+41202 None:intergenic
CCAGCCCACATTTGCTCAAT+GGG 0.361480 tig0019730:-40523 Msa1375600:CDS
GTGGTTGTTGATTATGTTGT+GGG 0.362716 tig0019730:+41639 None:intergenic
AAATGAAGTTTGTACGGTAT+TGG 0.371842 tig0019730:-42398 Msa1375600:five_prime_UTR
TTAAAGTCATCCTCTTGGTT+GGG 0.376197 tig0019730:+41488 None:intergenic
GCTAAGAATTATCAGGGATC+TGG 0.378393 tig0019730:-40393 Msa1375600:CDS
AAGCTAACTTCAATATTTGA+TGG 0.382497 tig0019730:+38808 None:intergenic
TGAAGACACTGCAAGAGATT+GGG 0.385412 tig0019730:-38944 Msa1375600:CDS
TCGGCAACTTCTTCATCGTC+AGG 0.396141 tig0019730:+39316 None:intergenic
ATGAAGACACTGCAAGAGAT+TGG 0.396405 tig0019730:-38945 Msa1375600:CDS
GCTCAATGGGCTACAATGGC+AGG 0.402429 tig0019730:-40510 Msa1375600:CDS
AGTTCTCAACCTATGCTCAT+TGG 0.407789 tig0019730:-39945 Msa1375600:CDS
TGAAGATGTTCCATTATATC+TGG 0.410021 tig0019730:+41518 None:intergenic
TGAAAATTTACTTCTCAAAT+GGG 0.410175 tig0019730:-41597 Msa1375600:CDS
TTAATCACCTGTTTCTCTCT+AGG 0.411679 tig0019730:+38996 None:intergenic
TCTCAATCCTAGAGAGAAAC+AGG 0.412404 tig0019730:-39003 Msa1375600:CDS
GGGATTCTGATGAAAGTGTC+TGG 0.416791 tig0019730:+42053 None:intergenic
GCCAGCCCACATTTGCTCAA+TGG 0.421203 tig0019730:-40524 Msa1375600:CDS
CCAGAAGAGTCAGAGCTTCT+GGG 0.422406 tig0019730:-41364 Msa1375600:CDS
TTAGTTAATTGTTCGGAGAA+AGG 0.423808 tig0019730:-42127 Msa1375600:five_prime_UTR
GATGATGATGGCGGTGGGTA+GGG 0.432222 tig0019730:+42033 None:intergenic
AAAGGACCTGGAAAAGGTAT+TGG 0.433707 tig0019730:-39030 Msa1375600:CDS
CATCGACAGCCCAGTTGCTT+CGG 0.435866 tig0019730:+39297 None:intergenic
TTATTCAAGAGAAAACAAAA+AGG 0.440516 tig0019730:-38726 Msa1375600:three_prime_UTR
GGCAATGGATACAGCATCTT+CGG 0.444268 tig0019730:+41556 None:intergenic
CTGCTTAATGAGCTGTTCTT+CGG 0.445939 tig0019730:+39061 None:intergenic
TGCTCATTGGTGGATTAAAC+AGG 0.447444 tig0019730:-39932 Msa1375600:CDS
ACCAGCAGGACCAGATATAA+TGG 0.448188 tig0019730:-41528 Msa1375600:CDS
GGTGGTGGAACCAGACTTGA+AGG 0.448899 tig0019730:+41319 None:intergenic
TGGGATGAGTCTGCAAGATC+TGG 0.448927 tig0019730:-40373 Msa1375600:CDS
GCTTAACAGTTCCACATGGT+GGG 0.453802 tig0019730:-39397 Msa1375600:intron
CTTCCCATTCGGATAAGAAA+AGG 0.454639 tig0019730:+42243 None:intergenic
GAGAACTTAATTTCTTCGGA+TGG 0.458689 tig0019730:+41206 None:intergenic
GGAAATGATGGGTGTAAGTA+GGG 0.462570 tig0019730:-38922 Msa1375600:CDS
TCATTTCATTCATTCATTCA+AGG 0.463108 tig0019730:+42165 None:intergenic
TAAGTTCTCTGAAGGAATAC+AGG 0.465978 tig0019730:-41192 Msa1375600:intron
GGGAAATGATGGGTGTAAGT+AGG 0.467729 tig0019730:-38923 Msa1375600:CDS
CTTGAAGGAGACGATGTTTG+TGG 0.468675 tig0019730:+41334 None:intergenic
TCCATTATATCTGGTCCTGC+TGG 0.469713 tig0019730:+41527 None:intergenic
TAGTTAGTTAGTTAATTGTT+CGG 0.470287 tig0019730:-42134 Msa1375600:five_prime_UTR
GGATGCCGCGGGCTTGTAAG+AGG 0.472869 tig0019730:-40000 Msa1375600:CDS
TCCTGCTGGTCCAGTGGCAA+TGG 0.473175 tig0019730:+41541 None:intergenic
AGATCTCTAGAACAGAAAGT+TGG 0.474573 tig0019730:-39235 Msa1375600:CDS
AGCTAACTTCAATATTTGAT+GGG 0.478315 tig0019730:+38809 None:intergenic
AAGTAAGAGAAAGCAAATGA+AGG 0.478974 tig0019730:-38539 None:intergenic
TTTCTTATCCGAATGGGAAG+GGG 0.479510 tig0019730:-42240 Msa1375600:five_prime_UTR
AACATCGTCTCCTTCAAGTC+TGG 0.484299 tig0019730:-41329 Msa1375600:CDS
ATTAAAGTCATCCTCTTGGT+TGG 0.488896 tig0019730:+41487 None:intergenic
GAGCATCAAATTTGAAATCA+AGG 0.489172 tig0019730:+41855 None:intergenic
CTAAGAATTATCAGGGATCT+GGG 0.490714 tig0019730:-40392 Msa1375600:CDS
GATCTCTAGAACAGAAAGTT+GGG 0.490872 tig0019730:-39234 Msa1375600:CDS
GGCTTAACAGTTCCACATGG+TGG 0.491941 tig0019730:-39398 Msa1375600:intron
ACTTTCTGTTCTAGAGATCT+GGG 0.492366 tig0019730:+39238 None:intergenic
ACCTTGGCCCTATGTCGCTC+AGG 0.493051 tig0019730:-41807 Msa1375600:CDS
GGAGTTTGCCTGAGCGACAT+AGG 0.494093 tig0019730:+41799 None:intergenic
GCAAGAGATTGGGGAAATGA+TGG 0.494350 tig0019730:-38934 Msa1375600:CDS
TCTCAACCTATGCTCATTGG+TGG 0.502003 tig0019730:-39942 Msa1375600:CDS
GGTAAAATTAGACAGAGGTA+AGG 0.503347 tig0019730:-42333 Msa1375600:five_prime_UTR
AGTAAGAGAAAGCAAATGAA+GGG 0.503463 tig0019730:-38538 None:intergenic
GGTGGATTAAACAGGCAGTT+CGG 0.505718 tig0019730:-39924 Msa1375600:CDS
TCCATTGCCACTGGACCAGC+AGG 0.505748 tig0019730:-41542 Msa1375600:CDS
TGAAGCTCTTACTCTTGCTA+AGG 0.508265 tig0019730:-41711 Msa1375600:CDS
TAAAGTCATCCTCTTGGTTG+GGG 0.508635 tig0019730:+41489 None:intergenic
AAAATACTGCTGCAAATGCT+TGG 0.508949 tig0019730:+38842 None:intergenic
TTCTACAGATGAGGAGGAGG+AGG 0.510283 tig0019730:+41778 None:intergenic
TGATTCTACAGATGAGGAGG+AGG 0.513896 tig0019730:+41775 None:intergenic
TGGAGATTTGGTATGGATGA+TGG 0.516643 tig0019730:-38972 Msa1375600:CDS
CATCATTAAAGTCATCCTCT+TGG 0.522501 tig0019730:+41483 None:intergenic
ATCTGGTCCTGCTGGTCCAG+TGG 0.527770 tig0019730:+41535 None:intergenic
CCCATTGAGCAAATGTGGGC+TGG 0.527803 tig0019730:+40523 None:intergenic
GTTGTTCTTAAGTAACGCAA+TGG 0.530950 tig0019730:+41254 None:intergenic
TGATGATGATGGCGGTGGGT+AGG 0.533434 tig0019730:+42032 None:intergenic
TCAAGTCTGGTTCCACCACC+AGG 0.536953 tig0019730:-41316 Msa1375600:CDS
TAAACAAAATGAAGTTTGTA+CGG 0.538230 tig0019730:-42404 Msa1375600:five_prime_UTR
GATTAAATGGAGATTTGGTA+TGG 0.540033 tig0019730:-38979 Msa1375600:CDS
TTCTTATCCGAATGGGAAGG+GGG 0.540429 tig0019730:-42239 Msa1375600:five_prime_UTR
CTTAACAGTTCCACATGGTG+GGG 0.543723 tig0019730:-39396 Msa1375600:intron
ATAATGATGTTTAAAATAGA+GGG 0.546672 tig0019730:-38568 Msa1375600:three_prime_UTR
GGTGGTTGTTGATTATGTTG+TGG 0.547660 tig0019730:+41638 None:intergenic
AGACTGAAAGTTTAAGACTC+TGG 0.548233 tig0019730:+39206 None:intergenic
CTTGAATAATGAAGAAAATG+TGG 0.549898 tig0019730:+38740 None:intergenic
TTCCCATTCGGATAAGAAAA+GGG 0.550030 tig0019730:+42244 None:intergenic
TGTAGCCCATTGAGCAAATG+TGG 0.553613 tig0019730:+40518 None:intergenic
CTCAATGGGCTACAATGGCA+GGG 0.555592 tig0019730:-40509 Msa1375600:CDS
TGGTTGTTGATTATGTTGTG+GGG 0.556371 tig0019730:+41640 None:intergenic
CAATTAAGAAGGGTGAAGGA+AGG 0.557782 tig0019730:-42354 Msa1375600:five_prime_UTR
TCTCAAATGGGTTCAACACA+TGG 0.558500 tig0019730:-41585 Msa1375600:CDS
TCAGGGGTGGAAGGAAGTTG+CGG 0.559046 tig0019730:+41617 None:intergenic
ATTTGCTCAATGGGCTACAA+TGG 0.559335 tig0019730:-40514 Msa1375600:CDS
GAAGAAATTAAGTTCTCTGA+AGG 0.563158 tig0019730:-41200 Msa1375600:CDS
GAAGACACTGCAAGAGATTG+GGG 0.566948 tig0019730:-38943 Msa1375600:CDS
GGCTGCTGCAAAGCTTGCAA+AGG 0.568821 tig0019730:-41690 Msa1375600:CDS
GAGAAGTATGATGCTTCTAA+GGG 0.570079 tig0019730:-39973 Msa1375600:CDS
GAGTTTGCCTGAGCGACATA+GGG 0.570107 tig0019730:+41800 None:intergenic
CAACTGGGCTGTCGATGAAG+AGG 0.570194 tig0019730:-39291 Msa1375600:CDS
AAGTGATTCTACAGATGAGG+AGG 0.571659 tig0019730:+41772 None:intergenic
GTTGTTGATTATGTTGTGGG+GGG 0.573629 tig0019730:+41642 None:intergenic
GGTTGTTGATTATGTTGTGG+GGG 0.579454 tig0019730:+41641 None:intergenic
AAGAGTCAGAGCTTCTGGGA+AGG 0.580062 tig0019730:-41360 Msa1375600:CDS
GATGCTGTATCCATTGCCAC+TGG 0.580093 tig0019730:-41551 Msa1375600:CDS
TGAGGAACTTGAAGATGTAG+AGG 0.581553 tig0019730:-41444 Msa1375600:CDS
ACTAGTATAGATGCAAGATC+CGG 0.582105 tig0019730:-41407 Msa1375600:CDS
TTTAATCCACCAATGAGCAT+AGG 0.584506 tig0019730:+39936 None:intergenic
GAAAGAGATGATGATGATGA+TGG 0.585942 tig0019730:+42021 None:intergenic
AATCACTTTCTGTTCAGTCA+AGG 0.588234 tig0019730:-39900 Msa1375600:CDS
GAGTCTGCAAGATCTGGTCC+AGG 0.588401 tig0019730:-40367 Msa1375600:intron
GGTTACAGGAAGGATGCCGC+GGG 0.590724 tig0019730:-40011 Msa1375600:intron
CTTATCCGAATGGGAAGGGG+GGG 0.592421 tig0019730:-42237 Msa1375600:five_prime_UTR
AAGAAGTGATTCTACAGATG+AGG 0.593743 tig0019730:+41769 None:intergenic
TCTTATCCGAATGGGAAGGG+GGG 0.597773 tig0019730:-42238 Msa1375600:five_prime_UTR
GAAAAGGGTGAGATGAGATG+AGG 0.599335 tig0019730:+42259 None:intergenic
GCCTGAGCGACATAGGGCCA+AGG 0.599872 tig0019730:+41806 None:intergenic
TTAACAGTTCCACATGGTGG+GGG 0.603234 tig0019730:-39395 Msa1375600:intron
AAGAAGTTGCCGAAGCAACT+GGG 0.609388 tig0019730:-39306 Msa1375600:CDS
TCTTCAAGTTCCTCAGAGGT+AGG 0.609680 tig0019730:+41452 None:intergenic
TCAGTTGCTAAGAATTATCA+GGG 0.610615 tig0019730:-40399 Msa1375600:CDS
AATCTGAAAACTCACCACCT+TGG 0.611811 tig0019730:-41823 Msa1375600:CDS
GGGTTACAGGAAGGATGCCG+CGG 0.612454 tig0019730:-40012 Msa1375600:intron
CAAGAGATTGGGGAAATGAT+GGG 0.622941 tig0019730:-38933 Msa1375600:CDS
GGATTCTGATGAAAGTGTCT+GGG 0.624779 tig0019730:+42054 None:intergenic
GATTTGGTATGGATGATGGA+AGG 0.625281 tig0019730:-38968 Msa1375600:CDS
TCAATGGGCTACAATGGCAG+GGG 0.637790 tig0019730:-40508 Msa1375600:CDS
TGTTCGGAGAAAGGATAATG+TGG 0.639946 tig0019730:-42118 Msa1375600:exon
TCACATTAGCCCCAACCAAG+AGG 0.641102 tig0019730:-41498 Msa1375600:CDS
GAACAACAACTAGAACTACA+AGG 0.641229 tig0019730:-41238 Msa1375600:CDS
TCTGGGTTGCAGATGAATTG+TGG 0.645434 tig0019730:+42071 None:intergenic
AAAGCGTGTTCGTACACAAG+AGG 0.653089 tig0019730:-41291 Msa1375600:CDS
AGGAAGGTAAAATTAGACAG+AGG 0.653464 tig0019730:-42338 Msa1375600:five_prime_UTR
TGAGCGACATAGGGCCAAGG+TGG 0.654691 tig0019730:+41809 None:intergenic
GAATAATGAAGAAAATGTGG+AGG 0.655093 tig0019730:+38743 None:intergenic
GGGGTGGAAGGAAGTTGCGG+TGG 0.664288 tig0019730:+41620 None:intergenic
GGCAACTTACAAAGTGAAGG+AGG 0.666025 tig0019730:-39374 Msa1375600:CDS
CTGCACCTCTTACAAGCCCG+CGG 0.671463 tig0019730:+39995 None:intergenic
TTTGGCTTAACAGTTCCACA+TGG 0.676694 tig0019730:-39401 Msa1375600:intron
TACATCTTCAAGTTCCTCAG+AGG 0.677856 tig0019730:+41448 None:intergenic
TGTCGACGAGCCTACCTCTG+AGG 0.690720 tig0019730:-41462 Msa1375600:CDS
GTAGCCCATTGAGCAAATGT+GGG 0.718383 tig0019730:+40519 None:intergenic
AGGTAAGGAATTGAGTGACG+AGG 0.724366 tig0019730:-42318 Msa1375600:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAGTTTTCAATTAAGA+AGG - tig0019730:38577-38596 Msa1375600:three_prime_UTR 15.0%
!!! AAAAAGTTTTCAATTAAGAA+GGG - tig0019730:38578-38597 Msa1375600:three_prime_UTR 15.0%
!! AAGATATAACGATAAATATT+GGG + tig0019730:40019-40038 None:intergenic 15.0%
!!! ATGACAAATTTTAAAACTAT+AGG - tig0019730:40688-40707 Msa1375600:intron 15.0%
!!! ATAATGATGTTTAAAATAGA+GGG - tig0019730:42374-42393 Msa1375600:five_prime_UTR 15.0%
!! TAGTTAGTTAGTTAATTGTT+CGG - tig0019730:38808-38827 Msa1375600:three_prime_UTR 20.0%
!!! ATTTGAGAAGTAAATTTTCA+GGG + tig0019730:39345-39364 None:intergenic 20.0%
!! TGAAAATTTACTTCTCAAAT+GGG - tig0019730:39345-39364 Msa1375600:CDS 20.0%
!! GAAGATATAACGATAAATAT+TGG + tig0019730:40020-40039 None:intergenic 20.0%
!! GAAAGAATATTAATAGTGAA+AGG - tig0019730:40157-40176 Msa1375600:intron 20.0%
!!! ATAATTCAAACGTTTTCTTA+GGG + tig0019730:40472-40491 None:intergenic 20.0%
!!! ATATAATTTGAAATATGCAC+TGG - tig0019730:40662-40681 Msa1375600:intron 20.0%
!!! TATAATTTGAAATATGCACT+GGG - tig0019730:40663-40682 Msa1375600:intron 20.0%
!!! AGACTTTTTTGCAATATTTT+TGG - tig0019730:41523-41542 Msa1375600:CDS 20.0%
!!! TATTCATTTTTCTGATACAT+TGG - tig0019730:41810-41829 Msa1375600:CDS 20.0%
!! ATAAAAAGAACAAAGATATC+AGG + tig0019730:42169-42188 None:intergenic 20.0%
!! TTATTCAAGAGAAAACAAAA+AGG - tig0019730:42216-42235 Msa1375600:five_prime_UTR 20.0%
!! AAAAAATAATGATGAACTCT+TGG + tig0019730:42293-42312 None:intergenic 20.0%
!!! ATCATTATTTTTTTTGTACG+TGG - tig0019730:42300-42319 Msa1375600:five_prime_UTR 20.0%
!!! ATTACTTTCTCCAATTTTTA+AGG + tig0019730:42347-42366 None:intergenic 20.0%
!!! GATAATGATGTTTAAAATAG+AGG - tig0019730:42373-42392 Msa1375600:five_prime_UTR 20.0%
! TCATTTCATTCATTCATTCA+AGG + tig0019730:38780-38799 None:intergenic 25.0%
!!! TGTCTTGTAATTGTTGTTTT+GGG + tig0019730:39037-39056 None:intergenic 25.0%
!! TATTTTGTCTTCTTCATCAA+CGG - tig0019730:39060-39079 Msa1375600:CDS 25.0%
!! TTTGAGAAGTAAATTTTCAG+GGG + tig0019730:39344-39363 None:intergenic 25.0%
!! CATTTGAGAAGTAAATTTTC+AGG + tig0019730:39346-39365 None:intergenic 25.0%
! CTGAAAATTTACTTCTCAAA+TGG - tig0019730:39344-39363 Msa1375600:CDS 25.0%
! TTCAGAGAACTTAATTTCTT+CGG + tig0019730:39743-39762 None:intergenic 25.0%
!!! AGACTTTTGTTATAAAACCT+AGG + tig0019730:39804-39823 None:intergenic 25.0%
!! AAAGCTTGTTTAGAACAATA+TGG - tig0019730:39938-39957 Msa1375600:CDS 25.0%
! ATCAACTGAATTATCAATCT+AGG - tig0019730:40218-40237 Msa1375600:intron 25.0%
! TATGAGATCCTGAATTATAT+TGG + tig0019730:40355-40374 None:intergenic 25.0%
!! CATAATTCAAACGTTTTCTT+AGG + tig0019730:40473-40492 None:intergenic 25.0%
! CTAAGAAAACGTTTGAATTA+TGG - tig0019730:40471-40490 Msa1375600:CDS 25.0%
!! TTTCTAGCAAAATATTGTAC+AGG + tig0019730:40611-40630 None:intergenic 25.0%
!! CAATATTTTGCTAGAAAGTA+CGG - tig0019730:40614-40633 Msa1375600:intron 25.0%
! AACACATCTTAAATCAAAAG+AGG - tig0019730:40752-40771 Msa1375600:intron 25.0%
! ATAGTTAAATGGTTGATTAC+TGG + tig0019730:40902-40921 None:intergenic 25.0%
!!! ACCATTTAACTATTTTTCGT+TGG - tig0019730:40909-40928 Msa1375600:intron 25.0%
!!! CCATTTAACTATTTTTCGTT+GGG - tig0019730:40910-40929 Msa1375600:intron 25.0%
! AAGATAAAGATAATACTCAC+TGG + tig0019730:41080-41099 None:intergenic 25.0%
! AATGAAAATATTTCCATGCA+TGG + tig0019730:41120-41139 None:intergenic 25.0%
!! TTGGCAATTTTCAAATAAAC+AGG + tig0019730:41144-41163 None:intergenic 25.0%
! CACAAATTTGAACAAGATTA+GGG + tig0019730:41764-41783 None:intergenic 25.0%
! TCAGAAAAATGAATATCACA+TGG + tig0019730:41805-41824 None:intergenic 25.0%
! AGCTAACTTCAATATTTGAT+GGG + tig0019730:42136-42155 None:intergenic 25.0%
! AAGCTAACTTCAATATTTGA+TGG + tig0019730:42137-42156 None:intergenic 25.0%
!! TATTGAAGTTAGCTTATTAC+AGG - tig0019730:42142-42161 Msa1375600:five_prime_UTR 25.0%
! CTTGAATAATGAAGAAAATG+TGG + tig0019730:42205-42224 None:intergenic 25.0%
!!! AAGGTTATTTTCAGTATACT+AGG - tig0019730:42235-42254 Msa1375600:five_prime_UTR 25.0%
!!! ATTATTTTTTTTGTACGTGG+TGG - tig0019730:42303-42322 Msa1375600:five_prime_UTR 25.0%
AAATGAAGTTTGTACGGTAT+TGG - tig0019730:38544-38563 Msa1375600:three_prime_UTR 30.0%
! TTTTCAATTAAGAAGGGTGA+AGG - tig0019730:38584-38603 Msa1375600:three_prime_UTR 30.0%
TTAGTTAATTGTTCGGAGAA+AGG - tig0019730:38815-38834 Msa1375600:exon 30.0%
!!! GTGTCTTGTAATTGTTGTTT+TGG + tig0019730:39038-39057 None:intergenic 30.0%
! GAGCATCAAATTTGAAATCA+AGG + tig0019730:39090-39109 None:intergenic 30.0%
TGAAGATGTTCCATTATATC+TGG + tig0019730:39427-39446 None:intergenic 30.0%
GAAGAAATTAAGTTCTCTGA+AGG - tig0019730:39742-39761 Msa1375600:intron 30.0%
!! TATAAAACCTAGGTTCTAAG+TGG + tig0019730:39794-39813 None:intergenic 30.0%
ATAACAAAAGTCTACTATCG+CGG - tig0019730:39811-39830 Msa1375600:intron 30.0%
CGATAAATATTGGGTGATTT+AGG + tig0019730:40010-40029 None:intergenic 30.0%
! TGTAACATTCTTTCCTTTTC+TGG + tig0019730:40112-40131 None:intergenic 30.0%
ATAACTGTTCATTTGATCAC+AGG - tig0019730:40135-40154 Msa1375600:intron 30.0%
ATCAGTTGCTAAGAATTATC+AGG - tig0019730:40542-40561 Msa1375600:CDS 30.0%
TCAGTTGCTAAGAATTATCA+GGG - tig0019730:40543-40562 Msa1375600:CDS 30.0%
TTTCAAATTATATCCGTGTG+TGG + tig0019730:40655-40674 None:intergenic 30.0%
CATGTTGAATATCACAAGAA+TGG + tig0019730:40842-40861 None:intergenic 30.0%
CATTCTTGTGATATTCAACA+TGG - tig0019730:40840-40859 Msa1375600:intron 30.0%
CCCAACGAAAAATAGTTAAA+TGG + tig0019730:40913-40932 None:intergenic 30.0%
! CTCTATGAGCTTCTATTTTA+CGG + tig0019730:41192-41211 None:intergenic 30.0%
!! ATGTTGGTTCAACAAAAACA+AGG - tig0019730:41256-41275 Msa1375600:CDS 30.0%
TCGTTGAACAATCATCAATT+AGG - tig0019730:41332-41351 Msa1375600:CDS 30.0%
ACTATCTATAAAGTGGTACA+CGG - tig0019730:41460-41479 Msa1375600:CDS 30.0%
AAACAGTTGTACAGTGAAAA+TGG - tig0019730:41596-41615 Msa1375600:CDS 30.0%
GCACAAATTTGAACAAGATT+AGG + tig0019730:41765-41784 None:intergenic 30.0%
CATTAAGCAGTTCATGAAAA+AGG - tig0019730:41894-41913 Msa1375600:CDS 30.0%
! GATTAAATGGAGATTTGGTA+TGG - tig0019730:41963-41982 Msa1375600:intron 30.0%
! AAATTGAGTCATGTGCTTTT+AGG - tig0019730:42055-42074 Msa1375600:CDS 30.0%
GAATAATGAAGAAAATGTGG+AGG + tig0019730:42202-42221 None:intergenic 30.0%
!!! CAATTTTTAAGGCTCTTTTC+TGG + tig0019730:42336-42355 None:intergenic 30.0%
CAGAAAAGAGCCTTAAAAAT+TGG - tig0019730:42334-42353 Msa1375600:five_prime_UTR 30.0%
AGGAAGGTAAAATTAGACAG+AGG - tig0019730:38604-38623 Msa1375600:three_prime_UTR 35.0%
GGTAAAATTAGACAGAGGTA+AGG - tig0019730:38609-38628 Msa1375600:three_prime_UTR 35.0%
TTCCCATTCGGATAAGAAAA+GGG + tig0019730:38701-38720 None:intergenic 35.0%
! TTTTCTTATCCGAATGGGAA+GGG - tig0019730:38701-38720 Msa1375600:three_prime_UTR 35.0%
! GAAAGAGATGATGATGATGA+TGG + tig0019730:38924-38943 None:intergenic 35.0%
AAGAAGTGATTCTACAGATG+AGG + tig0019730:39176-39195 None:intergenic 35.0%
! TGGTTGTTGATTATGTTGTG+GGG + tig0019730:39305-39324 None:intergenic 35.0%
! GTGGTTGTTGATTATGTTGT+GGG + tig0019730:39306-39325 None:intergenic 35.0%
TTAAAGTCATCCTCTTGGTT+GGG + tig0019730:39457-39476 None:intergenic 35.0%
ATTAAAGTCATCCTCTTGGT+TGG + tig0019730:39458-39477 None:intergenic 35.0%
CATCATTAAAGTCATCCTCT+TGG + tig0019730:39462-39481 None:intergenic 35.0%
ACTAGTATAGATGCAAGATC+CGG - tig0019730:39535-39554 Msa1375600:intron 35.0%
!!! TTCTGGCTTTTCTTTCTGTT+TGG + tig0019730:39564-39583 None:intergenic 35.0%
GTTGTTCTTAAGTAACGCAA+TGG + tig0019730:39691-39710 None:intergenic 35.0%
GAACAACAACTAGAACTACA+AGG - tig0019730:39704-39723 Msa1375600:intron 35.0%
GAGAACTTAATTTCTTCGGA+TGG + tig0019730:39739-39758 None:intergenic 35.0%
! TAAGTTCTCTGAAGGAATAC+AGG - tig0019730:39750-39769 Msa1375600:intron 35.0%
! ATCAAGAGCATATGAGAGAA+TGG + tig0019730:39975-39994 None:intergenic 35.0%
ATATATCTCAGTGCCAGAAA+AGG - tig0019730:40096-40115 Msa1375600:intron 35.0%
AATTATATTGGCAGGAGAAG+AGG + tig0019730:40343-40362 None:intergenic 35.0%
TTCTCCTGCCAATATAATTC+AGG - tig0019730:40344-40363 Msa1375600:intron 35.0%
AGATCCTGAATTATATTGGC+AGG + tig0019730:40351-40370 None:intergenic 35.0%
AAAGCTCGAAAAACTTCAAG+AGG - tig0019730:40374-40393 Msa1375600:CDS 35.0%
CTAAGAATTATCAGGGATCT+GGG - tig0019730:40550-40569 Msa1375600:CDS 35.0%
TGTACAGGTGAAAATATACC+TGG + tig0019730:40596-40615 None:intergenic 35.0%
! TAGAAAGTACGGACACTAAA+GGG - tig0019730:40625-40644 Msa1375600:intron 35.0%
TTAGTATGAGTCATTGCACT+TGG - tig0019730:40791-40810 Msa1375600:intron 35.0%
!! ACTATTTTTCGTTGGGTTAC+AGG - tig0019730:40917-40936 Msa1375600:intron 35.0%
! AGAGAAGTATGATGCTTCTA+AGG - tig0019730:40968-40987 Msa1375600:intron 35.0%
! GAGAAGTATGATGCTTCTAA+GGG - tig0019730:40969-40988 Msa1375600:intron 35.0%
TTTAATCCACCAATGAGCAT+AGG + tig0019730:41009-41028 None:intergenic 35.0%
AATCACTTTCTGTTCAGTCA+AGG - tig0019730:41042-41061 Msa1375600:intron 35.0%
TATTTCTTTCTGACCATGCA+TGG - tig0019730:41104-41123 Msa1375600:intron 35.0%
! AGAAGTCATTGTTGGAGTTT+TGG + tig0019730:41163-41182 None:intergenic 35.0%
! TGAGCTTCTATTTTACGGAA+TGG + tig0019730:41187-41206 None:intergenic 35.0%
TTGTTGAACCAACATCAATC+AGG + tig0019730:41251-41270 None:intergenic 35.0%
ATGATTGTTCAACGAGAACA+GGG + tig0019730:41327-41346 None:intergenic 35.0%
ACCACTTTATAGATAGTCCA+CGG + tig0019730:41457-41476 None:intergenic 35.0%
!! ACTTTCTGTTCTAGAGATCT+GGG + tig0019730:41707-41726 None:intergenic 35.0%
!! AACTTTCTGTTCTAGAGATC+TGG + tig0019730:41708-41727 None:intergenic 35.0%
!! AGATCTCTAGAACAGAAAGT+TGG - tig0019730:41707-41726 Msa1375600:CDS 35.0%
!! GATCTCTAGAACAGAAAGTT+GGG - tig0019730:41708-41727 Msa1375600:CDS 35.0%
! AGACTGAAAGTTTAAGACTC+TGG + tig0019730:41739-41758 None:intergenic 35.0%
CTTGTTCAAATTTGTGCTTC+AGG - tig0019730:41768-41787 Msa1375600:CDS 35.0%
! TTAATCACCTGTTTCTCTCT+AGG + tig0019730:41949-41968 None:intergenic 35.0%
GAGAGAAACAGGTGATTAAA+TGG - tig0019730:41950-41969 Msa1375600:intron 35.0%
CAGGTGATTAAATGGAGATT+TGG - tig0019730:41958-41977 Msa1375600:intron 35.0%
AAAATACTGCTGCAAATGCT+TGG + tig0019730:42103-42122 None:intergenic 35.0%
CAATTAAGAAGGGTGAAGGA+AGG - tig0019730:38588-38607 Msa1375600:three_prime_UTR 40.0%
! TCACCCTTTTCTTATCCGAA+TGG - tig0019730:38695-38714 Msa1375600:three_prime_UTR 40.0%
! CACCCTTTTCTTATCCGAAT+GGG - tig0019730:38696-38715 Msa1375600:three_prime_UTR 40.0%
CTTCCCATTCGGATAAGAAA+AGG + tig0019730:38702-38721 None:intergenic 40.0%
! CTTTTCTTATCCGAATGGGA+AGG - tig0019730:38700-38719 Msa1375600:three_prime_UTR 40.0%
TTTCTTATCCGAATGGGAAG+GGG - tig0019730:38702-38721 Msa1375600:three_prime_UTR 40.0%
TGTTCGGAGAAAGGATAATG+TGG - tig0019730:38824-38843 Msa1375600:exon 40.0%
!! GGATTCTGATGAAAGTGTCT+GGG + tig0019730:38891-38910 None:intergenic 40.0%
!! AGAGATGATGATGATGATGG+CGG + tig0019730:38921-38940 None:intergenic 40.0%
AATCTGAAAACTCACCACCT+TGG - tig0019730:39119-39138 Msa1375600:intron 40.0%
AAGTGATTCTACAGATGAGG+AGG + tig0019730:39173-39192 None:intergenic 40.0%
TGAAGCTCTTACTCTTGCTA+AGG - tig0019730:39231-39250 Msa1375600:CDS 40.0%
! GTTGTTGATTATGTTGTGGG+GGG + tig0019730:39303-39322 None:intergenic 40.0%
! GGTTGTTGATTATGTTGTGG+GGG + tig0019730:39304-39323 None:intergenic 40.0%
! GGTGGTTGTTGATTATGTTG+TGG + tig0019730:39307-39326 None:intergenic 40.0%
!! AGTAAATTTTCAGGGGTGGA+AGG + tig0019730:39337-39356 None:intergenic 40.0%
!! GAGAAGTAAATTTTCAGGGG+TGG + tig0019730:39341-39360 None:intergenic 40.0%
! TCTCAAATGGGTTCAACACA+TGG - tig0019730:39357-39376 Msa1375600:CDS 40.0%
TAAAGTCATCCTCTTGGTTG+GGG + tig0019730:39456-39475 None:intergenic 40.0%
! TACATCTTCAAGTTCCTCAG+AGG + tig0019730:39497-39516 None:intergenic 40.0%
TGAGGAACTTGAAGATGTAG+AGG - tig0019730:39498-39517 Msa1375600:intron 40.0%
! TGGCTTTTCTTTCTGTTTGG+CGG + tig0019730:39561-39580 None:intergenic 40.0%
TGCATTACCACTTAGAACCT+AGG - tig0019730:39784-39803 Msa1375600:intron 40.0%
AAGAACTGCAGTCTCAATGT+TGG + tig0019730:39863-39882 None:intergenic 40.0%
TACCACAATCGTTAGTGTGA+CGG - tig0019730:39908-39927 Msa1375600:CDS 40.0%
GGAGAAGAGGCAAATGAATT+AGG + tig0019730:40330-40349 None:intergenic 40.0%
!! ATTTGCTCAATGGGCTACAA+TGG - tig0019730:40428-40447 Msa1375600:CDS 40.0%
GCTAAGAATTATCAGGGATC+TGG - tig0019730:40549-40568 Msa1375600:CDS 40.0%
! CTAGAAAGTACGGACACTAA+AGG - tig0019730:40624-40643 Msa1375600:intron 40.0%
! AGAAAGTACGGACACTAAAG+GGG - tig0019730:40626-40645 Msa1375600:intron 40.0%
AAGAGTCCACACTTCTTCAA+TGG - tig0019730:40874-40893 Msa1375600:intron 40.0%
! TTTTTCGTTGGGTTACAGGA+AGG - tig0019730:40921-40940 Msa1375600:intron 40.0%
AGTTCTCAACCTATGCTCAT+TGG - tig0019730:40997-41016 Msa1375600:intron 40.0%
!! TGCTCATTGGTGGATTAAAC+AGG - tig0019730:41010-41029 Msa1375600:intron 40.0%
GACATTGACCTGATTGATGT+TGG - tig0019730:41240-41259 Msa1375600:CDS 40.0%
TGATTGTTCAACGAGAACAG+GGG + tig0019730:41326-41345 None:intergenic 40.0%
GATGATTGTTCAACGAGAAC+AGG + tig0019730:41328-41347 None:intergenic 40.0%
ACAATCAACGAATGTTGACG+CGG + tig0019730:41407-41426 None:intergenic 40.0%
ATAAGTACACCAATTCACCG+TGG - tig0019730:41437-41456 Msa1375600:CDS 40.0%
ATAGATAGTCCACGGTGAAT+TGG + tig0019730:41449-41468 None:intergenic 40.0%
! ACCGTGGACTATCTATAAAG+TGG - tig0019730:41453-41472 Msa1375600:CDS 40.0%
! TTTGGCTTAACAGTTCCACA+TGG - tig0019730:41541-41560 Msa1375600:CDS 40.0%
CTGCTTAATGAGCTGTTCTT+CGG + tig0019730:41884-41903 None:intergenic 40.0%
CATGAAAAAGGACCTGGAAA+AGG - tig0019730:41906-41925 Msa1375600:CDS 40.0%
! AAAGGACCTGGAAAAGGTAT+TGG - tig0019730:41912-41931 Msa1375600:CDS 40.0%
TCTCAATCCTAGAGAGAAAC+AGG - tig0019730:41939-41958 Msa1375600:intron 40.0%
! TGGAGATTTGGTATGGATGA+TGG - tig0019730:41970-41989 Msa1375600:intron 40.0%
!! GATTTGGTATGGATGATGGA+AGG - tig0019730:41974-41993 Msa1375600:intron 40.0%
ATGAAGACACTGCAAGAGAT+TGG - tig0019730:41997-42016 Msa1375600:intron 40.0%
TGAAGACACTGCAAGAGATT+GGG - tig0019730:41998-42017 Msa1375600:intron 40.0%
CAAGAGATTGGGGAAATGAT+GGG - tig0019730:42009-42028 Msa1375600:intron 40.0%
!! GGAAATGATGGGTGTAAGTA+GGG - tig0019730:42020-42039 Msa1375600:CDS 40.0%
AGGTAAGGAATTGAGTGACG+AGG - tig0019730:38624-38643 Msa1375600:three_prime_UTR 45.0%
GAAAAGGGTGAGATGAGATG+AGG + tig0019730:38686-38705 None:intergenic 45.0%
TTCTTATCCGAATGGGAAGG+GGG - tig0019730:38703-38722 Msa1375600:three_prime_UTR 45.0%
CGCTTCTTCTCTTCTCTTCT+GGG + tig0019730:38752-38771 None:intergenic 45.0%
ACGCTTCTTCTCTTCTCTTC+TGG + tig0019730:38753-38772 None:intergenic 45.0%
TCTGGGTTGCAGATGAATTG+TGG + tig0019730:38874-38893 None:intergenic 45.0%
!! GGGATTCTGATGAAAGTGTC+TGG + tig0019730:38892-38911 None:intergenic 45.0%
!! ATGATGATGATGATGGCGGT+GGG + tig0019730:38917-38936 None:intergenic 45.0%
! GAGTTTTCAGATTCAGCAGG+AGG + tig0019730:39112-39131 None:intergenic 45.0%
! GGTGAGTTTTCAGATTCAGC+AGG + tig0019730:39115-39134 None:intergenic 45.0%
TGATTCTACAGATGAGGAGG+AGG + tig0019730:39170-39189 None:intergenic 45.0%
GGCAATGGATACAGCATCTT+CGG + tig0019730:39389-39408 None:intergenic 45.0%
ACCAGCAGGACCAGATATAA+TGG - tig0019730:39414-39433 Msa1375600:intron 45.0%
TCCATTATATCTGGTCCTGC+TGG + tig0019730:39418-39437 None:intergenic 45.0%
! TCTTCAAGTTCCTCAGAGGT+AGG + tig0019730:39493-39512 None:intergenic 45.0%
! TTTTCTTTCTGTTTGGCGGC+CGG + tig0019730:39557-39576 None:intergenic 45.0%
CTTGAAGGAGACGATGTTTG+TGG + tig0019730:39611-39630 None:intergenic 45.0%
AACATCGTCTCCTTCAAGTC+TGG - tig0019730:39613-39632 Msa1375600:intron 45.0%
!!! TGTACGAACACGCTTTTTCC+TGG + tig0019730:39647-39666 None:intergenic 45.0%
AAAGCGTGTTCGTACACAAG+AGG - tig0019730:39651-39670 Msa1375600:intron 45.0%
GAGGACCTTGCAGAAAAATG+TGG - tig0019730:40393-40412 Msa1375600:CDS 45.0%
GACCTTGCAGAAAAATGTGG+CGG - tig0019730:40396-40415 Msa1375600:CDS 45.0%
GTAGCCCATTGAGCAAATGT+GGG + tig0019730:40426-40445 None:intergenic 45.0%
TGTAGCCCATTGAGCAAATG+TGG + tig0019730:40427-40446 None:intergenic 45.0%
! GAAAGTACGGACACTAAAGG+GGG - tig0019730:40627-40646 Msa1375600:intron 45.0%
CTGGAACCATTGAAGAAGTG+TGG + tig0019730:40883-40902 None:intergenic 45.0%
TCTCAACCTATGCTCATTGG+TGG - tig0019730:41000-41019 Msa1375600:intron 45.0%
!! GGTGGATTAAACAGGCAGTT+CGG - tig0019730:41018-41037 Msa1375600:intron 45.0%
GGAATGGCAGAAGTCATTGT+TGG + tig0019730:41171-41190 None:intergenic 45.0%
GATTGTTCAACGAGAACAGG+GGG + tig0019730:41325-41344 None:intergenic 45.0%
! AGGAGACCATGAGCTTCTTT+TGG - tig0019730:41378-41397 Msa1375600:CDS 45.0%
! GGAGACCATGAGCTTCTTTT+GGG - tig0019730:41379-41398 Msa1375600:CDS 45.0%
! GAGACCATGAGCTTCTTTTG+GGG - tig0019730:41380-41399 Msa1375600:CDS 45.0%
! AGACCATGAGCTTCTTTTGG+GGG - tig0019730:41381-41400 Msa1375600:CDS 45.0%
GCTTAACAGTTCCACATGGT+GGG - tig0019730:41545-41564 Msa1375600:CDS 45.0%
CTTAACAGTTCCACATGGTG+GGG - tig0019730:41546-41565 Msa1375600:CDS 45.0%
TTAACAGTTCCACATGGTGG+GGG - tig0019730:41547-41566 Msa1375600:CDS 45.0%
GGCAACTTACAAAGTGAAGG+AGG - tig0019730:41568-41587 Msa1375600:CDS 45.0%
AAGAAGTTGCCGAAGCAACT+GGG - tig0019730:41636-41655 Msa1375600:CDS 45.0%
! TAGAGATCTGGGAGCTTTTG+GGG + tig0019730:41696-41715 None:intergenic 45.0%
! CTAGAGATCTGGGAGCTTTT+GGG + tig0019730:41697-41716 None:intergenic 45.0%
! TCTAGAGATCTGGGAGCTTT+TGG + tig0019730:41698-41717 None:intergenic 45.0%
GCAGTTCATGAAAAAGGACC+TGG - tig0019730:41900-41919 Msa1375600:CDS 45.0%
! GACTGTCCAATACCTTTTCC+AGG + tig0019730:41921-41940 None:intergenic 45.0%
GAAGACACTGCAAGAGATTG+GGG - tig0019730:41999-42018 Msa1375600:intron 45.0%
GCAAGAGATTGGGGAAATGA+TGG - tig0019730:42008-42027 Msa1375600:intron 45.0%
!! GGGAAATGATGGGTGTAAGT+AGG - tig0019730:42019-42038 Msa1375600:CDS 45.0%
TCTTATCCGAATGGGAAGGG+GGG - tig0019730:38704-38723 Msa1375600:three_prime_UTR 50.0%
!! GATGATGATGATGATGGCGG+TGG + tig0019730:38918-38937 None:intergenic 50.0%
GAGTTTGCCTGAGCGACATA+GGG + tig0019730:39145-39164 None:intergenic 50.0%
TTCTACAGATGAGGAGGAGG+AGG + tig0019730:39167-39186 None:intergenic 50.0%
GATGCTGTATCCATTGCCAC+TGG - tig0019730:39391-39410 Msa1375600:CDS 50.0%
TCACATTAGCCCCAACCAAG+AGG - tig0019730:39444-39463 Msa1375600:intron 50.0%
CCAGAAGAGTCAGAGCTTCT+GGG - tig0019730:39578-39597 Msa1375600:intron 50.0%
! AAGAGTCAGAGCTTCTGGGA+AGG - tig0019730:39582-39601 Msa1375600:intron 50.0%
!!! AACACGCTTTTTCCTGGTGG+TGG + tig0019730:39641-39660 None:intergenic 50.0%
!!! ACGAACACGCTTTTTCCTGG+TGG + tig0019730:39644-39663 None:intergenic 50.0%
AGTCTACTATCGCGGCATCA+TGG - tig0019730:39819-39838 Msa1375600:intron 50.0%
TGCCGTCACACTAACGATTG+TGG + tig0019730:39913-39932 None:intergenic 50.0%
CCAGCCCACATTTGCTCAAT+GGG - tig0019730:40419-40438 Msa1375600:CDS 50.0%
!! CTCAATGGGCTACAATGGCA+GGG - tig0019730:40433-40452 Msa1375600:CDS 50.0%
!! TCAATGGGCTACAATGGCAG+GGG - tig0019730:40434-40453 Msa1375600:CDS 50.0%
TGGGATGAGTCTGCAAGATC+TGG - tig0019730:40569-40588 Msa1375600:CDS 50.0%
AATGAGGATGAGGAGGACTG+CGG + tig0019730:41215-41234 None:intergenic 50.0%
TCCTCCTCATCCTCATTGGT+GGG - tig0019730:41218-41237 Msa1375600:CDS 50.0%
ATGTCCCACCAATGAGGATG+AGG + tig0019730:41225-41244 None:intergenic 50.0%
AGGTCAATGTCCCACCAATG+AGG + tig0019730:41231-41250 None:intergenic 50.0%
GGCTTAACAGTTCCACATGG+TGG - tig0019730:41544-41563 Msa1375600:CDS 50.0%
GGGGGCAACTTACAAAGTGA+AGG - tig0019730:41565-41584 Msa1375600:CDS 50.0%
TCGGCAACTTCTTCATCGTC+AGG + tig0019730:41629-41648 None:intergenic 50.0%
GAAGAAGTTGCCGAAGCAAC+TGG - tig0019730:41635-41654 Msa1375600:CDS 50.0%
!!! TGGGAGCTTTTGGGGTCAAA+AGG + tig0019730:41688-41707 None:intergenic 50.0%
ATTGGTGTGCGTTTCTGACC+AGG - tig0019730:41828-41847 Msa1375600:CDS 50.0%
CAGGATCAGCAAGTACTTCC+TGG + tig0019730:41849-41868 None:intergenic 50.0%
! TCTTCGGCTGTTTCAGCTTC+AGG + tig0019730:41868-41887 None:intergenic 50.0%
CTTATCCGAATGGGAAGGGG+GGG - tig0019730:38705-38724 Msa1375600:three_prime_UTR 55.0%
AACATCCCCCCCTTCCCATT+CGG + tig0019730:38713-38732 None:intergenic 55.0%
!! GATGATGATGGCGGTGGGTA+GGG + tig0019730:38912-38931 None:intergenic 55.0%
!! TGATGATGATGGCGGTGGGT+AGG + tig0019730:38913-38932 None:intergenic 55.0%
GGAGTTTGCCTGAGCGACAT+AGG + tig0019730:39146-39165 None:intergenic 55.0%
GGCTGCTGCAAAGCTTGCAA+AGG - tig0019730:39252-39271 Msa1375600:CDS 55.0%
TCAGGGGTGGAAGGAAGTTG+CGG + tig0019730:39328-39347 None:intergenic 55.0%
GCCAGAAGAGTCAGAGCTTC+TGG - tig0019730:39577-39596 Msa1375600:intron 55.0%
! CCCAGAAGCTCTGACTCTTC+TGG + tig0019730:39581-39600 None:intergenic 55.0%
!! GGTGGTGGAACCAGACTTGA+AGG + tig0019730:39626-39645 None:intergenic 55.0%
! TCAAGTCTGGTTCCACCACC+AGG - tig0019730:39626-39645 Msa1375600:intron 55.0%
! GGCCGCCACATTTTTCTGCA+AGG + tig0019730:40401-40420 None:intergenic 55.0%
GCCAGCCCACATTTGCTCAA+TGG - tig0019730:40418-40437 Msa1375600:CDS 55.0%
CCCATTGAGCAAATGTGGGC+TGG + tig0019730:40422-40441 None:intergenic 55.0%
!! GCTCAATGGGCTACAATGGC+AGG - tig0019730:40432-40451 Msa1375600:CDS 55.0%
GAGTCTGCAAGATCTGGTCC+AGG - tig0019730:40575-40594 Msa1375600:CDS 55.0%
!! ACTAAAGGGGGCACCACACA+CGG - tig0019730:40639-40658 Msa1375600:intron 55.0%
GCAGTCCTCCTCATCCTCAT+TGG - tig0019730:41214-41233 Msa1375600:CDS 55.0%
GTCCTCCTCATCCTCATTGG+TGG - tig0019730:41217-41236 Msa1375600:CDS 55.0%
TCCCACCAATGAGGATGAGG+AGG + tig0019730:41222-41241 None:intergenic 55.0%
AGGTCACCATCTCAGTCGTG+CGG - tig0019730:41352-41371 Msa1375600:CDS 55.0%
TGTAAGTTGCCCCCACCATG+TGG + tig0019730:41559-41578 None:intergenic 55.0%
CATCGACAGCCCAGTTGCTT+CGG + tig0019730:41648-41667 None:intergenic 55.0%
CAACTGGGCTGTCGATGAAG+AGG - tig0019730:41651-41670 Msa1375600:CDS 55.0%
TGAGCGACATAGGGCCAAGG+TGG + tig0019730:39136-39155 None:intergenic 60.0%
ACCTTGGCCCTATGTCGCTC+AGG - tig0019730:39135-39154 Msa1375600:intron 60.0%
TCCATTGCCACTGGACCAGC+AGG - tig0019730:39400-39419 Msa1375600:intron 60.0%
TCCTGCTGGTCCAGTGGCAA+TGG + tig0019730:39404-39423 None:intergenic 60.0%
ATCTGGTCCTGCTGGTCCAG+TGG + tig0019730:39410-39429 None:intergenic 60.0%
TGTCGACGAGCCTACCTCTG+AGG - tig0019730:39480-39499 Msa1375600:intron 60.0%
GGGTTACAGGAAGGATGCCG+CGG - tig0019730:40930-40949 Msa1375600:intron 60.0%
GGTTACAGGAAGGATGCCGC+GGG - tig0019730:40931-40950 Msa1375600:intron 60.0%
CTGCACCTCTTACAAGCCCG+CGG + tig0019730:40950-40969 None:intergenic 60.0%
CCTCATCCGCACGACTGAGA+TGG + tig0019730:41361-41380 None:intergenic 60.0%
CCATCTCAGTCGTGCGGATG+AGG - tig0019730:41358-41377 Msa1375600:CDS 60.0%
CGGCCCCCAAAAGAAGCTCA+TGG + tig0019730:41387-41406 None:intergenic 60.0%
GCCTGAGCGACATAGGGCCA+AGG + tig0019730:39139-39158 None:intergenic 65.0%
GGGGTGGAAGGAAGTTGCGG+TGG + tig0019730:39325-39344 None:intergenic 65.0%
GGATGCCGCGGGCTTGTAAG+AGG - tig0019730:40942-40961 Msa1375600:intron 65.0%
Chromosome Type Strat End Strand Name
tig0019730 gene 38541 42423 38541 ID=Msa1375600;Name=Msa1375600
tig0019730 mRNA 38541 42423 38541 ID=Msa1375600-mRNA-1;Parent=Msa1375600;Name=Msa1375600-mRNA-1;_AED=0.06;_eAED=0.06;_QI=300|1|1|1|1|1|6|292|568
tig0019730 exon 38541 39114 38541 ID=Msa1375600-mRNA-1:exon:4659;Parent=Msa1375600-mRNA-1
tig0019730 exon 39210 39410 39210 ID=Msa1375600-mRNA-1:exon:4658;Parent=Msa1375600-mRNA-1
tig0019730 exon 39885 40025 39885 ID=Msa1375600-mRNA-1:exon:4657;Parent=Msa1375600-mRNA-1
tig0019730 exon 40368 40598 40368 ID=Msa1375600-mRNA-1:exon:4656;Parent=Msa1375600-mRNA-1
tig0019730 exon 41193 41932 41193 ID=Msa1375600-mRNA-1:exon:4655;Parent=Msa1375600-mRNA-1
tig0019730 exon 42012 42423 42012 ID=Msa1375600-mRNA-1:exon:4654;Parent=Msa1375600-mRNA-1
tig0019730 five_prime_UTR 42124 42423 42124 ID=Msa1375600-mRNA-1:five_prime_utr;Parent=Msa1375600-mRNA-1
tig0019730 CDS 42012 42123 42012 ID=Msa1375600-mRNA-1:cds;Parent=Msa1375600-mRNA-1
tig0019730 CDS 41193 41932 41193 ID=Msa1375600-mRNA-1:cds;Parent=Msa1375600-mRNA-1
tig0019730 CDS 40368 40598 40368 ID=Msa1375600-mRNA-1:cds;Parent=Msa1375600-mRNA-1
tig0019730 CDS 39885 40025 39885 ID=Msa1375600-mRNA-1:cds;Parent=Msa1375600-mRNA-1
tig0019730 CDS 39210 39410 39210 ID=Msa1375600-mRNA-1:cds;Parent=Msa1375600-mRNA-1
tig0019730 CDS 38833 39114 38833 ID=Msa1375600-mRNA-1:cds;Parent=Msa1375600-mRNA-1
tig0019730 three_prime_UTR 38541 38832 38541 ID=Msa1375600-mRNA-1:three_prime_utr;Parent=Msa1375600-mRNA-1
Gene Sequence

>Msa1375600

ATGTGGTCATCGTCGTCGTCGTGTTTATTGCCACAATTCATCTGCAACCCAGACACTTTCATCAGAATCCCTACCCACCGCCATCATCATCATCATCTCTTTCTTCTTCAATCACCCAAAACAACAATTACAAGACACTGTATTTTGTCTTCTTCATCAACGGCACTCCTTGATTTCAAATTTGATGCTCCTCCTGCTGAATCTGAAAACTCACCACCTTGGCCCTATGTCGCTCAGGCAAACTCCTCCTCCTCCTCATCTGTAGAATCACTTCTTACTAGTGAAGACGCTGTTATAGCTGCTGCTGCTTCTGAAGCTCTTACTCTTGCTAAGGCTGCTGCAAAGCTTGCAAAGGATGCTACTCTCTTATTCAATAACAACCCCCCACAACATAATCAACAACCACCGCAACTTCCTTCCACCCCTGAAAATTTACTTCTCAAATGGGTTCAACACATGGAAGCAGCCGAAGATGCTGTATCCATTGCCACTGGACCAGCAGGACCAGATATAATGGAACATCTTCACATTAGCCCCAACCAAGAGGATGACTTTAATGATGTCGACGAGCCTACCTCTGAGGAACTTGAAGATGTAGAGGAACAACTTTTCGATACTAGTATAGATGCAAGATCCGGCCGCCAAACAGAAAGAAAAGCCAGAAGAGTCAGAGCTTCTGGGAAGGCTGCCACAAACATCGTCTCCTTCAAGTCTGGTTCCACCACCAGGAAAAAGCGTGTTCGTACACAAGAGGTTGACTATTCTGATCCATTGCGTTACTTAAGAACAACAACTAGAACTACAAGGCTTCTCACTCCATCCGAAGAAATTAAGTTCTCTGAAGGAATACAGGATCTCATAAAGCTCGAAAAACTTCAAGAGGACCTTGCAGAAAAATGTGGCGGCCAGCCCACATTTGCTCAATGGGCTACAATGGCAGGGGTAGATCAAAAGACCCTAAGAAAACGTTTGAATTATGGTGTATTTTGCAAAGAAAAAATGATTAAAAGCAATATACGACTTGTCATATCAGTTGCTAAGAATTATCAGGGATCTGGGATGAGTCTGCAAGATCTGGTCCAGGAAGGATGCCGCGGGCTTGTAAGAGGTGCAGAGAAGTATGATGCTTCTAAGGGTTTTAAGTTCTCAACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAATCACTTTCTGTTCAGTCAAGGACTATTCGCTTGCCATTCCACATGGTGGGGGCAACTTACAAAGTGAAGGAGGCAAGAAAACAGTTGTACAGTGAAAATGGAAGACAACCTGACGATGAAGAAGTTGCCGAAGCAACTGGGCTGTCGATGAAGAGGCTTAGTGCTGTCCTTTTGACCCCAAAAGCTCCCAGATCTCTAGAACAGAAAGTTGGGATCAACCAGAGTCTTAAACTTTCAGAAGTACTTGCTGATCCTGAAGCTGAAACAGCCGAAGAACAGCTCATTAAGCAGTTCATGAAAAAGGACCTGGAAAAGGTATTGGACAGTCTCAATCCTAGAGAGAAACAGGTGATTAAATGGAGATTTGGTATGGATGATGGAAGGATGAAGACACTGCAAGAGATTGGGGAAATGATGGGTGTAAGTAGGGAGAGAATTAGACAAATTGAGTCATGTGCTTTTAGGAAGCTTAAAAATAAGAAGAGAGCCAAGCATTTGCAGCAGTATTTTGTTTCATAA

Protein sequence

>Msa1375600

MWSSSSSCLLPQFICNPDTFIRIPTHRHHHHHLFLLQSPKTTITRHCILSSSSTALLDFKFDAPPAESENSPPWPYVAQANSSSSSSVESLLTSEDAVIAAAASEALTLAKAAAKLAKDATLLFNNNPPQHNQQPPQLPSTPENLLLKWVQHMEAAEDAVSIATGPAGPDIMEHLHISPNQEDDFNDVDEPTSEELEDVEEQLFDTSIDARSGRQTERKARRVRASGKAATNIVSFKSGSTTRKKRVRTQEVDYSDPLRYLRTTTRTTRLLTPSEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIKWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQYFVS*