AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001540 MtrunA17_Chr3g0145921 95.819 574 13 5 1 565 1 572 0.0 1115
Msa0001540 MtrunA17_Chr7g0264491 35.641 390 245 2 178 562 164 552 1.60e-76 252
Msa0001540 MtrunA17_Chr1g0180881 34.752 423 264 6 147 562 139 556 1.09e-74 248
Msa0001540 MtrunA17_Chr1g0146481 31.008 387 247 5 185 563 173 547 1.70e-59 207
Msa0001540 MtrunA17_Chr3g0090001 32.558 301 198 1 264 564 108 403 9.46e-47 169
Msa0001540 MtrunA17_Chr4g0021031 31.475 305 199 6 267 564 201 502 1.70e-42 159
Msa0001540 MtrunA17_Chr3g0126401 29.191 346 217 8 239 564 177 514 1.75e-32 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001540 AT1G08540.1 56.566 594 199 11 6 565 2 570 0.0 587
Msa0001540 AT2G36990.1 37.640 356 221 1 207 562 188 542 8.93e-78 256
Msa0001540 AT3G53920.1 34.405 311 198 2 254 563 264 569 2.46e-61 213
Msa0001540 AT5G13730.1 33.882 304 188 2 267 565 122 417 4.29e-52 184
Msa0001540 AT1G64860.1 29.775 356 228 9 217 564 159 500 9.59e-39 149
Msa0001540 AT5G24120.1 30.233 301 205 3 267 564 219 517 1.81e-37 145
Msa0001540 AT5G24120.3 30.233 301 205 3 267 564 219 517 1.81e-37 145
Msa0001540 AT5G24120.2 30.233 301 205 3 267 564 219 517 1.81e-37 145
Msa0001540 AT1G64860.2 29.677 310 197 8 217 518 159 455 5.01e-31 127
Msa0001540 AT3G53920.2 32.895 152 97 1 254 405 264 410 3.52e-28 117

Find 158 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCTTCTTCTCTTCTCTTC+TGG 0.135700 1_1:+3224293 None:intergenic
TCTAGAGATCTGGGAGCTTT+TGG 0.189205 1_1:+3221356 None:intergenic
GCCAGAAGAGTCAGAGCTTC+TGG 0.195456 1_1:-3223475 Msa0001540:CDS
CTAAGAAAACGTTTGAATTA+TGG 0.201254 1_1:-3222580 Msa0001540:CDS
CGCTTCTTCTCTTCTCTTCT+GGG 0.212244 1_1:+3224294 None:intergenic
TCTTCGGCTGTTTCAGCTTC+AGG 0.261013 1_1:+3221185 None:intergenic
GTGTCTTGTAATTGTTGTTT+TGG 0.271370 1_1:+3224017 None:intergenic
GAGAGAAACAGGTGATTAAA+TGG 0.275402 1_1:-3221100 Msa0001540:CDS
CTGAAAATTTACTTCTCAAA+TGG 0.275681 1_1:-3223708 Msa0001540:CDS
ATCAGTTGCTAAGAATTATC+AGG 0.278584 1_1:-3222509 Msa0001540:CDS
CCCAGAAGCTCTGACTCTTC+TGG 0.279014 1_1:+3223474 None:intergenic
AAACAGTTGTACAGTGAAAA+TGG 0.280971 1_1:-3221455 Msa0001540:CDS
AGAGATAATGATGTTTAAAA+TGG 0.300023 1_1:-3220680 Msa0001540:three_prime_UTR
CGGTGGGTAGGGATTCTGTC+TGG 0.304390 1_1:+3224154 None:intergenic
AACTTTCTGTTCTAGAGATC+TGG 0.306670 1_1:+3221346 None:intergenic
TATTGAAGTTAGCTTATTAC+AGG 0.306792 1_1:-3220908 Msa0001540:three_prime_UTR
CATTAAGCAGTTCATGAAAA+AGG 0.308002 1_1:-3221156 Msa0001540:CDS
CAGGTGATTAAATGGAGATT+TGG 0.320492 1_1:-3221092 Msa0001540:CDS
AAATGAAATTTGTACGGTAT+TGG 0.326814 1_1:-3224509 Msa0001540:five_prime_UTR
GAAGAAGTTGCCGAAGCAAC+TGG 0.327598 1_1:-3221416 Msa0001540:CDS
AGAGAAGTATGATGCTTCTA+AGG 0.329199 1_1:-3222083 Msa0001540:CDS
TTCAGAGAACTTAATTTCTT+CGG 0.359443 1_1:+3223312 None:intergenic
CCAGCCCACATTTGCTCAAT+GGG 0.361480 1_1:-3222632 Msa0001540:CDS
GTGGTTGTTGATTATGTTGT+GGG 0.362716 1_1:+3223749 None:intergenic
TTAAAGTCATCCTCTTGGTT+GGG 0.376197 1_1:+3223598 None:intergenic
GCTAAGAATTATCAGGGATC+TGG 0.378393 1_1:-3222502 Msa0001540:CDS
AAGCTAACTTCAATATTTGA+TGG 0.382497 1_1:+3220916 None:intergenic
TGAAGACACTGCAAGAGATT+GGG 0.385412 1_1:-3221052 Msa0001540:CDS
TCGGCAACTTCTTCATCGTC+AGG 0.396141 1_1:+3221425 None:intergenic
ATGAAGACACTGCAAGAGAT+TGG 0.396405 1_1:-3221053 Msa0001540:CDS
GCTCAATGGGCTACAATGGC+AGG 0.402429 1_1:-3222619 Msa0001540:CDS
AGTTCTCAACCTATGCTCAT+TGG 0.407789 1_1:-3222054 Msa0001540:CDS
TGAAGATGTTCCATTATATC+TGG 0.410021 1_1:+3223628 None:intergenic
TGAAAATTTACTTCTCAAAT+GGG 0.410175 1_1:-3223707 Msa0001540:CDS
TTAATCACCTGTTTCTCTCT+AGG 0.411679 1_1:+3221104 None:intergenic
TCTCAATCCTAGAGAGAAAC+AGG 0.412404 1_1:-3221111 Msa0001540:CDS
GCCAGCCCACATTTGCTCAA+TGG 0.421203 1_1:-3222633 Msa0001540:CDS
CCAGAAGAGTCAGAGCTTCT+GGG 0.422406 1_1:-3223474 Msa0001540:CDS
TTAGTTAATTGTTCGGAGAA+AGG 0.423808 1_1:-3224228 Msa0001540:five_prime_UTR
GATGATGATGGCGGTGGGTA+GGG 0.432222 1_1:+3224143 None:intergenic
AAAGGACCTGGAAAAGGTAT+TGG 0.433707 1_1:-3221138 Msa0001540:CDS
CATCGACAGCCCAGTTGCTT+CGG 0.435866 1_1:+3221406 None:intergenic
TTATTCAAGAGAAAACAAAA+AGG 0.440516 1_1:-3220834 Msa0001540:three_prime_UTR
GGCAATGGATACAGCATCTT+CGG 0.444268 1_1:+3223666 None:intergenic
CTGCTTAATGAGCTGTTCTT+CGG 0.445939 1_1:+3221169 None:intergenic
TGCTCATTGGTGGATTAAAC+AGG 0.447444 1_1:-3222041 Msa0001540:CDS
ACCAGCAGGACCAGATATAA+TGG 0.448188 1_1:-3223638 Msa0001540:CDS
GGTGGTGGAACCAGACTTGA+AGG 0.448899 1_1:+3223429 None:intergenic
TGGGATGAGTCTGCAAGATC+TGG 0.448927 1_1:-3222482 Msa0001540:CDS
GCTTAACAGTTCCACATGGT+GGG 0.453802 1_1:-3221506 Msa0001540:intron
CTTCCCATTCGGATAAGAAA+AGG 0.454639 1_1:+3224344 None:intergenic
GGAGTTTGCCTGAGAGACAT+AGG 0.455446 1_1:+3223909 None:intergenic
GAGAACTTAATTTCTTCGGA+TGG 0.458689 1_1:+3223316 None:intergenic
GGAAATGATGGGTGTAAGTA+GGG 0.462570 1_1:-3221030 Msa0001540:CDS
TCATTTCATTCATTCATTCA+AGG 0.463108 1_1:+3224266 None:intergenic
TAAGTTCTCTGAAGGAATAC+AGG 0.465978 1_1:-3223302 Msa0001540:intron
GATAATGATGTTTAAAATGG+AGG 0.467356 1_1:-3220677 Msa0001540:three_prime_UTR
GGGAAATGATGGGTGTAAGT+AGG 0.467729 1_1:-3221031 Msa0001540:CDS
CTTGAAGGAGACGATGTTTG+TGG 0.468675 1_1:+3223444 None:intergenic
TCCATTATATCTGGTCCTGC+TGG 0.469713 1_1:+3223637 None:intergenic
TAGTTAGTTAGTTAATTGTT+CGG 0.470287 1_1:-3224235 Msa0001540:five_prime_UTR
GGATGCCGCGGGCTTGTAAG+AGG 0.472869 1_1:-3222109 Msa0001540:CDS
TCCTGCTGGTCCAGTGGCAA+TGG 0.473175 1_1:+3223651 None:intergenic
AGATCTCTAGAACAGAAAGT+TGG 0.474573 1_1:-3221344 Msa0001540:CDS
ACCTTGGCCCTATGTCTCTC+AGG 0.475145 1_1:-3223917 Msa0001540:CDS
AGCTAACTTCAATATTTGAT+GGG 0.478315 1_1:+3220917 None:intergenic
AAGTAAGAGAAAGCAAATGA+AGG 0.478974 1_1:-3220647 None:intergenic
TTTCTTATCCGAATGGGAAG+GGG 0.479510 1_1:-3224341 Msa0001540:five_prime_UTR
AACATCGTCTCCTTCAAGTC+TGG 0.484299 1_1:-3223439 Msa0001540:CDS
ATTAAAGTCATCCTCTTGGT+TGG 0.488896 1_1:+3223597 None:intergenic
GAGCATCAAATTTGAAATCA+AGG 0.489172 1_1:+3223965 None:intergenic
CTAAGAATTATCAGGGATCT+GGG 0.490714 1_1:-3222501 Msa0001540:CDS
GATCTCTAGAACAGAAAGTT+GGG 0.490872 1_1:-3221343 Msa0001540:CDS
GGCTTAACAGTTCCACATGG+TGG 0.491941 1_1:-3221507 Msa0001540:intron
ACTTTCTGTTCTAGAGATCT+GGG 0.492366 1_1:+3221347 None:intergenic
GCAAGAGATTGGGGAAATGA+TGG 0.494350 1_1:-3221042 Msa0001540:CDS
GGTGGGTAGGGATTCTGTCT+GGG 0.501734 1_1:+3224155 None:intergenic
TCTCAACCTATGCTCATTGG+TGG 0.502003 1_1:-3222051 Msa0001540:CDS
GGTAAAATTAGACAGAGGTA+AGG 0.503347 1_1:-3224444 Msa0001540:five_prime_UTR
AGTAAGAGAAAGCAAATGAA+GGG 0.503463 1_1:-3220646 None:intergenic
GGTGGATTAAACAGGCAGTT+CGG 0.505718 1_1:-3222033 Msa0001540:CDS
TCCATTGCCACTGGACCAGC+AGG 0.505748 1_1:-3223652 Msa0001540:CDS
TGAAGCTCTTACTCTTGCTA+AGG 0.508265 1_1:-3223821 Msa0001540:CDS
TAAAGTCATCCTCTTGGTTG+GGG 0.508635 1_1:+3223599 None:intergenic
AAAATACTGCTGCAAATGCT+TGG 0.508949 1_1:+3220950 None:intergenic
TTCTACAGATGAGGAGGAGG+AGG 0.510283 1_1:+3223888 None:intergenic
TGATTCTACAGATGAGGAGG+AGG 0.513896 1_1:+3223885 None:intergenic
TGGAGATTTGGTATGGATGA+TGG 0.516643 1_1:-3221080 Msa0001540:CDS
CATCATTAAAGTCATCCTCT+TGG 0.522501 1_1:+3223593 None:intergenic
ATCTGGTCCTGCTGGTCCAG+TGG 0.527770 1_1:+3223645 None:intergenic
CCCATTGAGCAAATGTGGGC+TGG 0.527803 1_1:+3222632 None:intergenic
GTTGTTCTTAAGTAACGCAA+TGG 0.530950 1_1:+3223364 None:intergenic
TGATGATGATGGCGGTGGGT+AGG 0.533434 1_1:+3224142 None:intergenic
TCAAGTCTGGTTCCACCACC+AGG 0.536953 1_1:-3223426 Msa0001540:CDS
GATTAAATGGAGATTTGGTA+TGG 0.540033 1_1:-3221087 Msa0001540:CDS
TTCTTATCCGAATGGGAAGG+GGG 0.540429 1_1:-3224340 Msa0001540:five_prime_UTR
CTTAACAGTTCCACATGGTG+GGG 0.543723 1_1:-3221505 Msa0001540:intron
GGTGGTTGTTGATTATGTTG+TGG 0.547660 1_1:+3223748 None:intergenic
AGACTGAAAGTTTAAGACTC+TGG 0.548233 1_1:+3221315 None:intergenic
TAAACAAAATGAAATTTGTA+CGG 0.548254 1_1:-3224515 Msa0001540:five_prime_UTR
CTTGAATAATGAAGAAAATG+TGG 0.549898 1_1:+3220848 None:intergenic
TTCCCATTCGGATAAGAAAA+GGG 0.550030 1_1:+3224345 None:intergenic
TGTAGCCCATTGAGCAAATG+TGG 0.553613 1_1:+3222627 None:intergenic
CTCAATGGGCTACAATGGCA+GGG 0.555592 1_1:-3222618 Msa0001540:CDS
TGGTTGTTGATTATGTTGTG+GGG 0.556371 1_1:+3223750 None:intergenic
CAATTAAGAAGGGTGAAGGA+AGG 0.557782 1_1:-3224465 Msa0001540:five_prime_UTR
TCTCAAATGGGTTCAACACA+TGG 0.558500 1_1:-3223695 Msa0001540:CDS
ATAATGATGTTTAAAATGGA+GGG 0.558653 1_1:-3220676 Msa0001540:three_prime_UTR
TCAGGGGTGGAAGGAAGTTG+CGG 0.559046 1_1:+3223727 None:intergenic
ATTTGCTCAATGGGCTACAA+TGG 0.559335 1_1:-3222623 Msa0001540:CDS
GAAGAAATTAAGTTCTCTGA+AGG 0.563158 1_1:-3223310 Msa0001540:CDS
GAAGACACTGCAAGAGATTG+GGG 0.566948 1_1:-3221051 Msa0001540:CDS
GGCTGCTGCAAAGCTTGCAA+AGG 0.568821 1_1:-3223800 Msa0001540:CDS
GAGAAGTATGATGCTTCTAA+GGG 0.570079 1_1:-3222082 Msa0001540:CDS
CAACTGGGCTGTCGATGAAG+AGG 0.570194 1_1:-3221400 Msa0001540:CDS
AAGTGATTCTACAGATGAGG+AGG 0.571659 1_1:+3223882 None:intergenic
GTTGTTGATTATGTTGTGGG+GGG 0.573629 1_1:+3223752 None:intergenic
GGTTGTTGATTATGTTGTGG+GGG 0.579454 1_1:+3223751 None:intergenic
AAGAGTCAGAGCTTCTGGGA+AGG 0.580062 1_1:-3223470 Msa0001540:CDS
GATGCTGTATCCATTGCCAC+TGG 0.580093 1_1:-3223661 Msa0001540:CDS
TGAGGAACTTGAAGATGTAG+AGG 0.581553 1_1:-3223554 Msa0001540:CDS
ACTAGTATAGATGCAAGATC+CGG 0.582105 1_1:-3223517 Msa0001540:CDS
TTTAATCCACCAATGAGCAT+AGG 0.584506 1_1:+3222045 None:intergenic
GAAAGAGATGATGATGATGA+TGG 0.585942 1_1:+3224131 None:intergenic
AATCACTTTCTGTTCAGTCA+AGG 0.588234 1_1:-3222009 Msa0001540:CDS
GAGTCTGCAAGATCTGGTCC+AGG 0.588401 1_1:-3222476 Msa0001540:intron
GGTTACAGGAAGGATGCCGC+GGG 0.590724 1_1:-3222120 Msa0001540:intron
CTTATCCGAATGGGAAGGGG+GGG 0.592421 1_1:-3224338 Msa0001540:five_prime_UTR
AAGAAGTGATTCTACAGATG+AGG 0.593743 1_1:+3223879 None:intergenic
TCTTATCCGAATGGGAAGGG+GGG 0.597773 1_1:-3224339 Msa0001540:five_prime_UTR
GCCTGAGAGACATAGGGCCA+AGG 0.601892 1_1:+3223916 None:intergenic
TTAACAGTTCCACATGGTGG+GGG 0.603234 1_1:-3221504 Msa0001540:intron
AAGAAGTTGCCGAAGCAACT+GGG 0.609388 1_1:-3221415 Msa0001540:CDS
TCTTCAAGTTCCTCAGAGGT+AGG 0.609680 1_1:+3223562 None:intergenic
TCAGTTGCTAAGAATTATCA+GGG 0.610615 1_1:-3222508 Msa0001540:CDS
AATCTGAAAACTCACCACCT+TGG 0.611811 1_1:-3223933 Msa0001540:CDS
GAGTTTGCCTGAGAGACATA+GGG 0.611941 1_1:+3223910 None:intergenic
GGGTTACAGGAAGGATGCCG+CGG 0.612454 1_1:-3222121 Msa0001540:intron
TCTGGGTTGCAGATGAATTG+TGG 0.622138 1_1:+3224172 None:intergenic
CAAGAGATTGGGGAAATGAT+GGG 0.622941 1_1:-3221041 Msa0001540:CDS
GATTTGGTATGGATGATGGA+AGG 0.625281 1_1:-3221076 Msa0001540:CDS
AGATGAGATGAGATGAGATG+AGG 0.630119 1_1:+3224370 None:intergenic
TCAATGGGCTACAATGGCAG+GGG 0.637790 1_1:-3222617 Msa0001540:CDS
TGTTCGGAGAAAGGATAATG+TGG 0.639946 1_1:-3224219 Msa0001540:exon
TCACATTAGCCCCAACCAAG+AGG 0.641102 1_1:-3223608 Msa0001540:CDS
GAACAACAACTAGAACTACA+AGG 0.641229 1_1:-3223348 Msa0001540:CDS
AAAGCGTGTTCGTACACAAG+AGG 0.653089 1_1:-3223401 Msa0001540:CDS
AGGAAGGTAAAATTAGACAG+AGG 0.653464 1_1:-3224449 Msa0001540:five_prime_UTR
GAATAATGAAGAAAATGTGG+AGG 0.655093 1_1:+3220851 None:intergenic
GGGGTGGAAGGAAGTTGCGG+TGG 0.664288 1_1:+3223730 None:intergenic
GGCAACTTACAAAGTGAAGG+AGG 0.666025 1_1:-3221483 Msa0001540:CDS
TGAGAGACATAGGGCCAAGG+TGG 0.668285 1_1:+3223919 None:intergenic
CTGCACCTCTTACAAGCCCG+CGG 0.671463 1_1:+3222104 None:intergenic
TTTGGCTTAACAGTTCCACA+TGG 0.676694 1_1:-3221510 Msa0001540:intron
TACATCTTCAAGTTCCTCAG+AGG 0.677856 1_1:+3223558 None:intergenic
TGTCGACGAGCCTACCTCTG+AGG 0.690720 1_1:-3223572 Msa0001540:CDS
GTAGCCCATTGAGCAAATGT+GGG 0.718383 1_1:+3222628 None:intergenic
AGGTAAGGAATTGAGTGACG+AGG 0.724366 1_1:-3224429 Msa0001540:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAGTTTTCAATTAAGA+AGG - chr1_1:3220685-3220704 Msa0001540:three_prime_UTR 15.0%
!!! AAAAAGTTTTCAATTAAGAA+GGG - chr1_1:3220686-3220705 Msa0001540:three_prime_UTR 15.0%
!! AAGATATAACGATAAATATT+GGG + chr1_1:3222128-3222147 None:intergenic 15.0%
!!! ATGACAAATTTTAAAACTAT+AGG - chr1_1:3222798-3222817 Msa0001540:intron 15.0%
!! TAGTTAGTTAGTTAATTGTT+CGG - chr1_1:3220926-3220945 Msa0001540:exon 20.0%
!!! ATTTGAGAAGTAAATTTTCA+GGG + chr1_1:3221454-3221473 None:intergenic 20.0%
!! TGAAAATTTACTTCTCAAAT+GGG - chr1_1:3221454-3221473 Msa0001540:CDS 20.0%
!! GAAGATATAACGATAAATAT+TGG + chr1_1:3222129-3222148 None:intergenic 20.0%
!! GAAAGAATATTAATAGTGAA+AGG - chr1_1:3222266-3222285 Msa0001540:intron 20.0%
!!! ATAATTCAAACGTTTTCTTA+GGG + chr1_1:3222582-3222601 None:intergenic 20.0%
!!! ATATAATTTGAAATATGCAC+TGG - chr1_1:3222772-3222791 Msa0001540:intron 20.0%
!!! TATAATTTGAAATATGCACT+GGG - chr1_1:3222773-3222792 Msa0001540:intron 20.0%
!!! AGACTTTTTTGCAATATTTT+TGG - chr1_1:3223633-3223652 Msa0001540:CDS 20.0%
!!! TATTCATTTTTCTGATACAT+TGG - chr1_1:3223921-3223940 Msa0001540:CDS 20.0%
!! ATAAAAAGAACAAAGATATC+AGG + chr1_1:3224280-3224299 None:intergenic 20.0%
!! TTATTCAAGAGAAAACAAAA+AGG - chr1_1:3224327-3224346 Msa0001540:five_prime_UTR 20.0%
!! AAAAAATAATGATGAACTCT+TGG + chr1_1:3224404-3224423 None:intergenic 20.0%
!!! ATCATTATTTTTTTTGTACG+TGG - chr1_1:3224411-3224430 Msa0001540:five_prime_UTR 20.0%
!!! ATTACTTTCTCCAATTTTTA+AGG + chr1_1:3224458-3224477 None:intergenic 20.0%
!! AGAGATAATGATGTTTAAAA+TGG - chr1_1:3224481-3224500 Msa0001540:five_prime_UTR 20.0%
!!! ATAATGATGTTTAAAATGGA+GGG - chr1_1:3224485-3224504 Msa0001540:five_prime_UTR 20.0%
! AAATGAAATTTGTACGGTAT+TGG - chr1_1:3220652-3220671 Msa0001540:three_prime_UTR 25.0%
! TCATTTCATTCATTCATTCA+AGG + chr1_1:3220898-3220917 None:intergenic 25.0%
!!! TGTCTTGTAATTGTTGTTTT+GGG + chr1_1:3221146-3221165 None:intergenic 25.0%
!! TATTTTGTCTTCTTCATCAA+CGG - chr1_1:3221169-3221188 Msa0001540:CDS 25.0%
!! TTTGAGAAGTAAATTTTCAG+GGG + chr1_1:3221453-3221472 None:intergenic 25.0%
!! CATTTGAGAAGTAAATTTTC+AGG + chr1_1:3221455-3221474 None:intergenic 25.0%
! CTGAAAATTTACTTCTCAAA+TGG - chr1_1:3221453-3221472 Msa0001540:CDS 25.0%
! TTCAGAGAACTTAATTTCTT+CGG + chr1_1:3221852-3221871 None:intergenic 25.0%
!!! AGACTTTTGTTATAAAACCT+AGG + chr1_1:3221913-3221932 None:intergenic 25.0%
!! AAAGCTTGTTTAGAACAATA+TGG - chr1_1:3222047-3222066 Msa0001540:CDS 25.0%
! ATCAACTGAATTATCAATCT+AGG - chr1_1:3222327-3222346 Msa0001540:intron 25.0%
! TATGAGATCCTGAATTATAT+TGG + chr1_1:3222465-3222484 None:intergenic 25.0%
!! CATAATTCAAACGTTTTCTT+AGG + chr1_1:3222583-3222602 None:intergenic 25.0%
! CTAAGAAAACGTTTGAATTA+TGG - chr1_1:3222581-3222600 Msa0001540:CDS 25.0%
!! TTTCTAGCAAAATATTGTAC+AGG + chr1_1:3222721-3222740 None:intergenic 25.0%
!! CAATATTTTGCTAGAAAGTA+CGG - chr1_1:3222724-3222743 Msa0001540:intron 25.0%
! AACACATCTTAAATCAAAAG+AGG - chr1_1:3222862-3222881 Msa0001540:intron 25.0%
! ATAGTTAAATGGTTGATTAC+TGG + chr1_1:3223012-3223031 None:intergenic 25.0%
!!! ACCATTTAACTATTTTTCGT+TGG - chr1_1:3223019-3223038 Msa0001540:intron 25.0%
!!! CCATTTAACTATTTTTCGTT+GGG - chr1_1:3223020-3223039 Msa0001540:intron 25.0%
! AAGATAAAGATAATACTCAC+TGG + chr1_1:3223190-3223209 None:intergenic 25.0%
! AATGAAAATATTTCCATGCA+TGG + chr1_1:3223230-3223249 None:intergenic 25.0%
!! TTGGCAATTTTCAAATAAAC+AGG + chr1_1:3223254-3223273 None:intergenic 25.0%
! CACAAATTTGAACAAGATTA+GGG + chr1_1:3223874-3223893 None:intergenic 25.0%
! CAGAAAAATGAATATCACAT+GGG + chr1_1:3223915-3223934 None:intergenic 25.0%
! TCAGAAAAATGAATATCACA+TGG + chr1_1:3223916-3223935 None:intergenic 25.0%
! AGCTAACTTCAATATTTGAT+GGG + chr1_1:3224247-3224266 None:intergenic 25.0%
! AAGCTAACTTCAATATTTGA+TGG + chr1_1:3224248-3224267 None:intergenic 25.0%
!! TATTGAAGTTAGCTTATTAC+AGG - chr1_1:3224253-3224272 Msa0001540:five_prime_UTR 25.0%
! CTTGAATAATGAAGAAAATG+TGG + chr1_1:3224316-3224335 None:intergenic 25.0%
!!! AAGGTTATTTTCAGTATACT+AGG - chr1_1:3224346-3224365 Msa0001540:five_prime_UTR 25.0%
!!! ATTATTTTTTTTGTACGTGG+TGG - chr1_1:3224414-3224433 Msa0001540:five_prime_UTR 25.0%
!! GATAATGATGTTTAAAATGG+AGG - chr1_1:3224484-3224503 Msa0001540:five_prime_UTR 25.0%
! TTTTCAATTAAGAAGGGTGA+AGG - chr1_1:3220692-3220711 Msa0001540:three_prime_UTR 30.0%
TTAGTTAATTGTTCGGAGAA+AGG - chr1_1:3220933-3220952 Msa0001540:exon 30.0%
!!! GTGTCTTGTAATTGTTGTTT+TGG + chr1_1:3221147-3221166 None:intergenic 30.0%
! GAGCATCAAATTTGAAATCA+AGG + chr1_1:3221199-3221218 None:intergenic 30.0%
TGAAGATGTTCCATTATATC+TGG + chr1_1:3221536-3221555 None:intergenic 30.0%
GAAGAAATTAAGTTCTCTGA+AGG - chr1_1:3221851-3221870 Msa0001540:intron 30.0%
!! TATAAAACCTAGGTTCTAAG+TGG + chr1_1:3221903-3221922 None:intergenic 30.0%
ATAACAAAAGTCTACTATCG+CGG - chr1_1:3221920-3221939 Msa0001540:intron 30.0%
CGATAAATATTGGGTGATTT+AGG + chr1_1:3222119-3222138 None:intergenic 30.0%
! TGTAACATTCTTTCCTTTTC+TGG + chr1_1:3222221-3222240 None:intergenic 30.0%
ATAACTGTTCATTTGATCAC+AGG - chr1_1:3222244-3222263 Msa0001540:intron 30.0%
ATCAGTTGCTAAGAATTATC+AGG - chr1_1:3222652-3222671 Msa0001540:CDS 30.0%
TCAGTTGCTAAGAATTATCA+GGG - chr1_1:3222653-3222672 Msa0001540:CDS 30.0%
TTTCAAATTATATCCGTGTG+TGG + chr1_1:3222765-3222784 None:intergenic 30.0%
CATGTTGAATATCACAAGAA+TGG + chr1_1:3222952-3222971 None:intergenic 30.0%
CATTCTTGTGATATTCAACA+TGG - chr1_1:3222950-3222969 Msa0001540:intron 30.0%
CCCAACGAAAAATAGTTAAA+TGG + chr1_1:3223023-3223042 None:intergenic 30.0%
! CTCTATGAGCTTCTATTTTA+CGG + chr1_1:3223302-3223321 None:intergenic 30.0%
!! ATGTTGGTTCAACAAAAACA+AGG - chr1_1:3223366-3223385 Msa0001540:CDS 30.0%
TCGTTGAACAATCATCAATT+AGG - chr1_1:3223442-3223461 Msa0001540:CDS 30.0%
ACTATCTATAAAGTGGTACA+CGG - chr1_1:3223570-3223589 Msa0001540:CDS 30.0%
AAACAGTTGTACAGTGAAAA+TGG - chr1_1:3223706-3223725 Msa0001540:CDS 30.0%
GCACAAATTTGAACAAGATT+AGG + chr1_1:3223875-3223894 None:intergenic 30.0%
CATTAAGCAGTTCATGAAAA+AGG - chr1_1:3224005-3224024 Msa0001540:CDS 30.0%
! GATTAAATGGAGATTTGGTA+TGG - chr1_1:3224074-3224093 Msa0001540:intron 30.0%
! AAATTGAGTCATGTGCTTTT+AGG - chr1_1:3224166-3224185 Msa0001540:CDS 30.0%
GAATAATGAAGAAAATGTGG+AGG + chr1_1:3224313-3224332 None:intergenic 30.0%
!!! CAATTTTTAAGGCTCTTTTC+TGG + chr1_1:3224447-3224466 None:intergenic 30.0%
CAGAAAAGAGCCTTAAAAAT+TGG - chr1_1:3224445-3224464 Msa0001540:five_prime_UTR 30.0%
AGGAAGGTAAAATTAGACAG+AGG - chr1_1:3220712-3220731 Msa0001540:three_prime_UTR 35.0%
GGTAAAATTAGACAGAGGTA+AGG - chr1_1:3220717-3220736 Msa0001540:three_prime_UTR 35.0%
TTCCCATTCGGATAAGAAAA+GGG + chr1_1:3220819-3220838 None:intergenic 35.0%
! TTTTCTTATCCGAATGGGAA+GGG - chr1_1:3220819-3220838 Msa0001540:three_prime_UTR 35.0%
! GAAAGAGATGATGATGATGA+TGG + chr1_1:3221033-3221052 None:intergenic 35.0%
AAGAAGTGATTCTACAGATG+AGG + chr1_1:3221285-3221304 None:intergenic 35.0%
! TGGTTGTTGATTATGTTGTG+GGG + chr1_1:3221414-3221433 None:intergenic 35.0%
! GTGGTTGTTGATTATGTTGT+GGG + chr1_1:3221415-3221434 None:intergenic 35.0%
TTAAAGTCATCCTCTTGGTT+GGG + chr1_1:3221566-3221585 None:intergenic 35.0%
ATTAAAGTCATCCTCTTGGT+TGG + chr1_1:3221567-3221586 None:intergenic 35.0%
CATCATTAAAGTCATCCTCT+TGG + chr1_1:3221571-3221590 None:intergenic 35.0%
ACTAGTATAGATGCAAGATC+CGG - chr1_1:3221644-3221663 Msa0001540:intron 35.0%
!!! TTCTGGCTTTTCTTTCTGTT+TGG + chr1_1:3221673-3221692 None:intergenic 35.0%
GTTGTTCTTAAGTAACGCAA+TGG + chr1_1:3221800-3221819 None:intergenic 35.0%
GAACAACAACTAGAACTACA+AGG - chr1_1:3221813-3221832 Msa0001540:intron 35.0%
GAGAACTTAATTTCTTCGGA+TGG + chr1_1:3221848-3221867 None:intergenic 35.0%
! TAAGTTCTCTGAAGGAATAC+AGG - chr1_1:3221859-3221878 Msa0001540:intron 35.0%
! ATCAAGAGCATATGAGAGAA+TGG + chr1_1:3222084-3222103 None:intergenic 35.0%
ATATATCTCAGTGCCAGAAA+AGG - chr1_1:3222205-3222224 Msa0001540:intron 35.0%
AATTATATTGGCAGGAGAAG+AGG + chr1_1:3222453-3222472 None:intergenic 35.0%
TTCTCCTGCCAATATAATTC+AGG - chr1_1:3222454-3222473 Msa0001540:intron 35.0%
AGATCCTGAATTATATTGGC+AGG + chr1_1:3222461-3222480 None:intergenic 35.0%
AAAGCTCGAAAAACTTCAAG+AGG - chr1_1:3222484-3222503 Msa0001540:CDS 35.0%
CTAAGAATTATCAGGGATCT+GGG - chr1_1:3222660-3222679 Msa0001540:CDS 35.0%
TGTACAGGTGAAAATATACC+TGG + chr1_1:3222706-3222725 None:intergenic 35.0%
! TAGAAAGTACGGACACTAAA+GGG - chr1_1:3222735-3222754 Msa0001540:intron 35.0%
TTAGTATGAGTCATTGCACT+TGG - chr1_1:3222901-3222920 Msa0001540:intron 35.0%
!! ACTATTTTTCGTTGGGTTAC+AGG - chr1_1:3223027-3223046 Msa0001540:intron 35.0%
! AGAGAAGTATGATGCTTCTA+AGG - chr1_1:3223078-3223097 Msa0001540:intron 35.0%
! GAGAAGTATGATGCTTCTAA+GGG - chr1_1:3223079-3223098 Msa0001540:intron 35.0%
TTTAATCCACCAATGAGCAT+AGG + chr1_1:3223119-3223138 None:intergenic 35.0%
AATCACTTTCTGTTCAGTCA+AGG - chr1_1:3223152-3223171 Msa0001540:intron 35.0%
TATTTCTTTCTGACCATGCA+TGG - chr1_1:3223214-3223233 Msa0001540:intron 35.0%
! AGAAGTCATTGTTGGAGTTT+TGG + chr1_1:3223273-3223292 None:intergenic 35.0%
! TGAGCTTCTATTTTACGGAA+TGG + chr1_1:3223297-3223316 None:intergenic 35.0%
TTGTTGAACCAACATCAATC+AGG + chr1_1:3223361-3223380 None:intergenic 35.0%
ATGATTGTTCAACGAGAACA+GGG + chr1_1:3223437-3223456 None:intergenic 35.0%
ACCACTTTATAGATAGTCCA+CGG + chr1_1:3223567-3223586 None:intergenic 35.0%
!! ACTTTCTGTTCTAGAGATCT+GGG + chr1_1:3223817-3223836 None:intergenic 35.0%
!! AACTTTCTGTTCTAGAGATC+TGG + chr1_1:3223818-3223837 None:intergenic 35.0%
!! AGATCTCTAGAACAGAAAGT+TGG - chr1_1:3223817-3223836 Msa0001540:CDS 35.0%
!! GATCTCTAGAACAGAAAGTT+GGG - chr1_1:3223818-3223837 Msa0001540:CDS 35.0%
! AGACTGAAAGTTTAAGACTC+TGG + chr1_1:3223849-3223868 None:intergenic 35.0%
CTTGTTCAAATTTGTGCTTC+AGG - chr1_1:3223878-3223897 Msa0001540:CDS 35.0%
! TTAATCACCTGTTTCTCTCT+AGG + chr1_1:3224060-3224079 None:intergenic 35.0%
GAGAGAAACAGGTGATTAAA+TGG - chr1_1:3224061-3224080 Msa0001540:intron 35.0%
CAGGTGATTAAATGGAGATT+TGG - chr1_1:3224069-3224088 Msa0001540:intron 35.0%
AAAATACTGCTGCAAATGCT+TGG + chr1_1:3224214-3224233 None:intergenic 35.0%
CAATTAAGAAGGGTGAAGGA+AGG - chr1_1:3220696-3220715 Msa0001540:three_prime_UTR 40.0%
AGATGAGATGAGATGAGATG+AGG + chr1_1:3220794-3220813 None:intergenic 40.0%
! TCACCCTTTTCTTATCCGAA+TGG - chr1_1:3220813-3220832 Msa0001540:three_prime_UTR 40.0%
! CACCCTTTTCTTATCCGAAT+GGG - chr1_1:3220814-3220833 Msa0001540:three_prime_UTR 40.0%
CTTCCCATTCGGATAAGAAA+AGG + chr1_1:3220820-3220839 None:intergenic 40.0%
! CTTTTCTTATCCGAATGGGA+AGG - chr1_1:3220818-3220837 Msa0001540:three_prime_UTR 40.0%
TTTCTTATCCGAATGGGAAG+GGG - chr1_1:3220820-3220839 Msa0001540:three_prime_UTR 40.0%
TGTTCGGAGAAAGGATAATG+TGG - chr1_1:3220942-3220961 Msa0001540:CDS 40.0%
!! AGAGATGATGATGATGATGG+CGG + chr1_1:3221030-3221049 None:intergenic 40.0%
AATCTGAAAACTCACCACCT+TGG - chr1_1:3221228-3221247 Msa0001540:intron 40.0%
AAGTGATTCTACAGATGAGG+AGG + chr1_1:3221282-3221301 None:intergenic 40.0%
TGAAGCTCTTACTCTTGCTA+AGG - chr1_1:3221340-3221359 Msa0001540:CDS 40.0%
! GTTGTTGATTATGTTGTGGG+GGG + chr1_1:3221412-3221431 None:intergenic 40.0%
! GGTTGTTGATTATGTTGTGG+GGG + chr1_1:3221413-3221432 None:intergenic 40.0%
! GGTGGTTGTTGATTATGTTG+TGG + chr1_1:3221416-3221435 None:intergenic 40.0%
!! AGTAAATTTTCAGGGGTGGA+AGG + chr1_1:3221446-3221465 None:intergenic 40.0%
!! GAGAAGTAAATTTTCAGGGG+TGG + chr1_1:3221450-3221469 None:intergenic 40.0%
! TCTCAAATGGGTTCAACACA+TGG - chr1_1:3221466-3221485 Msa0001540:CDS 40.0%
TAAAGTCATCCTCTTGGTTG+GGG + chr1_1:3221565-3221584 None:intergenic 40.0%
! TACATCTTCAAGTTCCTCAG+AGG + chr1_1:3221606-3221625 None:intergenic 40.0%
TGAGGAACTTGAAGATGTAG+AGG - chr1_1:3221607-3221626 Msa0001540:intron 40.0%
! TGGCTTTTCTTTCTGTTTGG+CGG + chr1_1:3221670-3221689 None:intergenic 40.0%
TGCATTACCACTTAGAACCT+AGG - chr1_1:3221893-3221912 Msa0001540:intron 40.0%
AAGAACTGCAGTCTCAATGT+TGG + chr1_1:3221972-3221991 None:intergenic 40.0%
TACCACAATCGTTAGTGTGA+CGG - chr1_1:3222017-3222036 Msa0001540:CDS 40.0%
GGAGAAGAGGCAAATGAATT+AGG + chr1_1:3222440-3222459 None:intergenic 40.0%
!! ATTTGCTCAATGGGCTACAA+TGG - chr1_1:3222538-3222557 Msa0001540:CDS 40.0%
GCTAAGAATTATCAGGGATC+TGG - chr1_1:3222659-3222678 Msa0001540:CDS 40.0%
! CTAGAAAGTACGGACACTAA+AGG - chr1_1:3222734-3222753 Msa0001540:intron 40.0%
! AGAAAGTACGGACACTAAAG+GGG - chr1_1:3222736-3222755 Msa0001540:intron 40.0%
AAGAGTCCACACTTCTTCAA+TGG - chr1_1:3222984-3223003 Msa0001540:intron 40.0%
! TTTTTCGTTGGGTTACAGGA+AGG - chr1_1:3223031-3223050 Msa0001540:intron 40.0%
AGTTCTCAACCTATGCTCAT+TGG - chr1_1:3223107-3223126 Msa0001540:intron 40.0%
!! TGCTCATTGGTGGATTAAAC+AGG - chr1_1:3223120-3223139 Msa0001540:intron 40.0%
GACATTGACCTGATTGATGT+TGG - chr1_1:3223350-3223369 Msa0001540:CDS 40.0%
TGATTGTTCAACGAGAACAG+GGG + chr1_1:3223436-3223455 None:intergenic 40.0%
GATGATTGTTCAACGAGAAC+AGG + chr1_1:3223438-3223457 None:intergenic 40.0%
ACAATCAACGAATGTTGACG+CGG + chr1_1:3223517-3223536 None:intergenic 40.0%
ATAAGTACACCAATTCACCG+TGG - chr1_1:3223547-3223566 Msa0001540:CDS 40.0%
ATAGATAGTCCACGGTGAAT+TGG + chr1_1:3223559-3223578 None:intergenic 40.0%
! ACCGTGGACTATCTATAAAG+TGG - chr1_1:3223563-3223582 Msa0001540:CDS 40.0%
! TTTGGCTTAACAGTTCCACA+TGG - chr1_1:3223651-3223670 Msa0001540:CDS 40.0%
CTGCTTAATGAGCTGTTCTT+CGG + chr1_1:3223995-3224014 None:intergenic 40.0%
CATGAAAAAGGACCTGGAAA+AGG - chr1_1:3224017-3224036 Msa0001540:CDS 40.0%
! AAAGGACCTGGAAAAGGTAT+TGG - chr1_1:3224023-3224042 Msa0001540:CDS 40.0%
TCTCAATCCTAGAGAGAAAC+AGG - chr1_1:3224050-3224069 Msa0001540:intron 40.0%
! TGGAGATTTGGTATGGATGA+TGG - chr1_1:3224081-3224100 Msa0001540:intron 40.0%
!! GATTTGGTATGGATGATGGA+AGG - chr1_1:3224085-3224104 Msa0001540:intron 40.0%
ATGAAGACACTGCAAGAGAT+TGG - chr1_1:3224108-3224127 Msa0001540:intron 40.0%
TGAAGACACTGCAAGAGATT+GGG - chr1_1:3224109-3224128 Msa0001540:intron 40.0%
CAAGAGATTGGGGAAATGAT+GGG - chr1_1:3224120-3224139 Msa0001540:intron 40.0%
!! GGAAATGATGGGTGTAAGTA+GGG - chr1_1:3224131-3224150 Msa0001540:CDS 40.0%
AGGTAAGGAATTGAGTGACG+AGG - chr1_1:3220732-3220751 Msa0001540:three_prime_UTR 45.0%
TTCTTATCCGAATGGGAAGG+GGG - chr1_1:3220821-3220840 Msa0001540:three_prime_UTR 45.0%
CGCTTCTTCTCTTCTCTTCT+GGG + chr1_1:3220870-3220889 None:intergenic 45.0%
ACGCTTCTTCTCTTCTCTTC+TGG + chr1_1:3220871-3220890 None:intergenic 45.0%
TCTGGGTTGCAGATGAATTG+TGG + chr1_1:3220992-3221011 None:intergenic 45.0%
!! ATGATGATGATGATGGCGGT+GGG + chr1_1:3221026-3221045 None:intergenic 45.0%
! GAGTTTTCAGATTCAGCAGG+AGG + chr1_1:3221221-3221240 None:intergenic 45.0%
! GGTGAGTTTTCAGATTCAGC+AGG + chr1_1:3221224-3221243 None:intergenic 45.0%
GAGTTTGCCTGAGAGACATA+GGG + chr1_1:3221254-3221273 None:intergenic 45.0%
TGATTCTACAGATGAGGAGG+AGG + chr1_1:3221279-3221298 None:intergenic 45.0%
GGCAATGGATACAGCATCTT+CGG + chr1_1:3221498-3221517 None:intergenic 45.0%
ACCAGCAGGACCAGATATAA+TGG - chr1_1:3221523-3221542 Msa0001540:intron 45.0%
TCCATTATATCTGGTCCTGC+TGG + chr1_1:3221527-3221546 None:intergenic 45.0%
! TCTTCAAGTTCCTCAGAGGT+AGG + chr1_1:3221602-3221621 None:intergenic 45.0%
! TTTTCTTTCTGTTTGGCGGC+CGG + chr1_1:3221666-3221685 None:intergenic 45.0%
CTTGAAGGAGACGATGTTTG+TGG + chr1_1:3221720-3221739 None:intergenic 45.0%
AACATCGTCTCCTTCAAGTC+TGG - chr1_1:3221722-3221741 Msa0001540:intron 45.0%
!!! TGTACGAACACGCTTTTTCC+TGG + chr1_1:3221756-3221775 None:intergenic 45.0%
AAAGCGTGTTCGTACACAAG+AGG - chr1_1:3221760-3221779 Msa0001540:intron 45.0%
GAGGACCTTGCAGAAAAATG+TGG - chr1_1:3222503-3222522 Msa0001540:CDS 45.0%
GACCTTGCAGAAAAATGTGG+CGG - chr1_1:3222506-3222525 Msa0001540:CDS 45.0%
GTAGCCCATTGAGCAAATGT+GGG + chr1_1:3222536-3222555 None:intergenic 45.0%
TGTAGCCCATTGAGCAAATG+TGG + chr1_1:3222537-3222556 None:intergenic 45.0%
! GAAAGTACGGACACTAAAGG+GGG - chr1_1:3222737-3222756 Msa0001540:intron 45.0%
CTGGAACCATTGAAGAAGTG+TGG + chr1_1:3222993-3223012 None:intergenic 45.0%
TCTCAACCTATGCTCATTGG+TGG - chr1_1:3223110-3223129 Msa0001540:intron 45.0%
!! GGTGGATTAAACAGGCAGTT+CGG - chr1_1:3223128-3223147 Msa0001540:intron 45.0%
GGAATGGCAGAAGTCATTGT+TGG + chr1_1:3223281-3223300 None:intergenic 45.0%
GATTGTTCAACGAGAACAGG+GGG + chr1_1:3223435-3223454 None:intergenic 45.0%
! AGGAGACCATGAGCTTCTTT+TGG - chr1_1:3223488-3223507 Msa0001540:CDS 45.0%
! GGAGACCATGAGCTTCTTTT+GGG - chr1_1:3223489-3223508 Msa0001540:CDS 45.0%
! GAGACCATGAGCTTCTTTTG+GGG - chr1_1:3223490-3223509 Msa0001540:CDS 45.0%
! AGACCATGAGCTTCTTTTGG+GGG - chr1_1:3223491-3223510 Msa0001540:CDS 45.0%
GCTTAACAGTTCCACATGGT+GGG - chr1_1:3223655-3223674 Msa0001540:CDS 45.0%
CTTAACAGTTCCACATGGTG+GGG - chr1_1:3223656-3223675 Msa0001540:CDS 45.0%
TTAACAGTTCCACATGGTGG+GGG - chr1_1:3223657-3223676 Msa0001540:CDS 45.0%
GGCAACTTACAAAGTGAAGG+AGG - chr1_1:3223678-3223697 Msa0001540:CDS 45.0%
AAGAAGTTGCCGAAGCAACT+GGG - chr1_1:3223746-3223765 Msa0001540:CDS 45.0%
! TAGAGATCTGGGAGCTTTTG+GGG + chr1_1:3223806-3223825 None:intergenic 45.0%
! CTAGAGATCTGGGAGCTTTT+GGG + chr1_1:3223807-3223826 None:intergenic 45.0%
! TCTAGAGATCTGGGAGCTTT+TGG + chr1_1:3223808-3223827 None:intergenic 45.0%
GCAGTTCATGAAAAAGGACC+TGG - chr1_1:3224011-3224030 Msa0001540:CDS 45.0%
! GACTGTCCAATACCTTTTCC+AGG + chr1_1:3224032-3224051 None:intergenic 45.0%
GAAGACACTGCAAGAGATTG+GGG - chr1_1:3224110-3224129 Msa0001540:intron 45.0%
GCAAGAGATTGGGGAAATGA+TGG - chr1_1:3224119-3224138 Msa0001540:intron 45.0%
!! GGGAAATGATGGGTGTAAGT+AGG - chr1_1:3224130-3224149 Msa0001540:CDS 45.0%
TCTTATCCGAATGGGAAGGG+GGG - chr1_1:3220822-3220841 Msa0001540:three_prime_UTR 50.0%
!! GATGATGATGATGATGGCGG+TGG + chr1_1:3221027-3221046 None:intergenic 50.0%
GGAGTTTGCCTGAGAGACAT+AGG + chr1_1:3221255-3221274 None:intergenic 50.0%
TTCTACAGATGAGGAGGAGG+AGG + chr1_1:3221276-3221295 None:intergenic 50.0%
GATGCTGTATCCATTGCCAC+TGG - chr1_1:3221500-3221519 Msa0001540:CDS 50.0%
TCACATTAGCCCCAACCAAG+AGG - chr1_1:3221553-3221572 Msa0001540:intron 50.0%
CCAGAAGAGTCAGAGCTTCT+GGG - chr1_1:3221687-3221706 Msa0001540:intron 50.0%
! AAGAGTCAGAGCTTCTGGGA+AGG - chr1_1:3221691-3221710 Msa0001540:intron 50.0%
!!! AACACGCTTTTTCCTGGTGG+TGG + chr1_1:3221750-3221769 None:intergenic 50.0%
!!! ACGAACACGCTTTTTCCTGG+TGG + chr1_1:3221753-3221772 None:intergenic 50.0%
AGTCTACTATCGCGGCATCA+TGG - chr1_1:3221928-3221947 Msa0001540:intron 50.0%
TGCCGTCACACTAACGATTG+TGG + chr1_1:3222022-3222041 None:intergenic 50.0%
CCAGCCCACATTTGCTCAAT+GGG - chr1_1:3222529-3222548 Msa0001540:CDS 50.0%
!! CTCAATGGGCTACAATGGCA+GGG - chr1_1:3222543-3222562 Msa0001540:CDS 50.0%
!! TCAATGGGCTACAATGGCAG+GGG - chr1_1:3222544-3222563 Msa0001540:CDS 50.0%
TGGGATGAGTCTGCAAGATC+TGG - chr1_1:3222679-3222698 Msa0001540:CDS 50.0%
AATGAGGATGAGGAGGACTG+CGG + chr1_1:3223325-3223344 None:intergenic 50.0%
TCCTCCTCATCCTCATTGGT+GGG - chr1_1:3223328-3223347 Msa0001540:CDS 50.0%
ATGTCCCACCAATGAGGATG+AGG + chr1_1:3223335-3223354 None:intergenic 50.0%
AGGTCAATGTCCCACCAATG+AGG + chr1_1:3223341-3223360 None:intergenic 50.0%
GGCTTAACAGTTCCACATGG+TGG - chr1_1:3223654-3223673 Msa0001540:CDS 50.0%
GGGGGCAACTTACAAAGTGA+AGG - chr1_1:3223675-3223694 Msa0001540:CDS 50.0%
TCGGCAACTTCTTCATCGTC+AGG + chr1_1:3223739-3223758 None:intergenic 50.0%
GAAGAAGTTGCCGAAGCAAC+TGG - chr1_1:3223745-3223764 Msa0001540:CDS 50.0%
!!! TGGGAGCTTTTGGGGTCAAA+AGG + chr1_1:3223798-3223817 None:intergenic 50.0%
ATTGGTGTGCGTTTCTGACC+AGG - chr1_1:3223939-3223958 Msa0001540:CDS 50.0%
CAGGATCAGCAAGTACTTCC+TGG + chr1_1:3223960-3223979 None:intergenic 50.0%
! TCTTCGGCTGTTTCAGCTTC+AGG + chr1_1:3223979-3223998 None:intergenic 50.0%
CTTATCCGAATGGGAAGGGG+GGG - chr1_1:3220823-3220842 Msa0001540:three_prime_UTR 55.0%
AACATCCCCCCCTTCCCATT+CGG + chr1_1:3220831-3220850 None:intergenic 55.0%
GGTGGGTAGGGATTCTGTCT+GGG + chr1_1:3221009-3221028 None:intergenic 55.0%
!! GATGATGATGGCGGTGGGTA+GGG + chr1_1:3221021-3221040 None:intergenic 55.0%
!! TGATGATGATGGCGGTGGGT+AGG + chr1_1:3221022-3221041 None:intergenic 55.0%
TGAGAGACATAGGGCCAAGG+TGG + chr1_1:3221245-3221264 None:intergenic 55.0%
ACCTTGGCCCTATGTCTCTC+AGG - chr1_1:3221244-3221263 Msa0001540:intron 55.0%
GGCTGCTGCAAAGCTTGCAA+AGG - chr1_1:3221361-3221380 Msa0001540:CDS 55.0%
TCAGGGGTGGAAGGAAGTTG+CGG + chr1_1:3221437-3221456 None:intergenic 55.0%
GCCAGAAGAGTCAGAGCTTC+TGG - chr1_1:3221686-3221705 Msa0001540:intron 55.0%
! CCCAGAAGCTCTGACTCTTC+TGG + chr1_1:3221690-3221709 None:intergenic 55.0%
!! GGTGGTGGAACCAGACTTGA+AGG + chr1_1:3221735-3221754 None:intergenic 55.0%
! TCAAGTCTGGTTCCACCACC+AGG - chr1_1:3221735-3221754 Msa0001540:intron 55.0%
! GGCCGCCACATTTTTCTGCA+AGG + chr1_1:3222511-3222530 None:intergenic 55.0%
GCCAGCCCACATTTGCTCAA+TGG - chr1_1:3222528-3222547 Msa0001540:CDS 55.0%
CCCATTGAGCAAATGTGGGC+TGG + chr1_1:3222532-3222551 None:intergenic 55.0%
!! GCTCAATGGGCTACAATGGC+AGG - chr1_1:3222542-3222561 Msa0001540:CDS 55.0%
GAGTCTGCAAGATCTGGTCC+AGG - chr1_1:3222685-3222704 Msa0001540:CDS 55.0%
!! ACTAAAGGGGGCACCACACA+CGG - chr1_1:3222749-3222768 Msa0001540:intron 55.0%
GCAGTCCTCCTCATCCTCAT+TGG - chr1_1:3223324-3223343 Msa0001540:CDS 55.0%
GTCCTCCTCATCCTCATTGG+TGG - chr1_1:3223327-3223346 Msa0001540:CDS 55.0%
TCCCACCAATGAGGATGAGG+AGG + chr1_1:3223332-3223351 None:intergenic 55.0%
AGGTCACCATCTCAGTCGTG+CGG - chr1_1:3223462-3223481 Msa0001540:CDS 55.0%
TGTAAGTTGCCCCCACCATG+TGG + chr1_1:3223669-3223688 None:intergenic 55.0%
CATCGACAGCCCAGTTGCTT+CGG + chr1_1:3223758-3223777 None:intergenic 55.0%
CAACTGGGCTGTCGATGAAG+AGG - chr1_1:3223761-3223780 Msa0001540:CDS 55.0%
CGGTGGGTAGGGATTCTGTC+TGG + chr1_1:3221010-3221029 None:intergenic 60.0%
GCCTGAGAGACATAGGGCCA+AGG + chr1_1:3221248-3221267 None:intergenic 60.0%
TCCATTGCCACTGGACCAGC+AGG - chr1_1:3221509-3221528 Msa0001540:intron 60.0%
TCCTGCTGGTCCAGTGGCAA+TGG + chr1_1:3221513-3221532 None:intergenic 60.0%
ATCTGGTCCTGCTGGTCCAG+TGG + chr1_1:3221519-3221538 None:intergenic 60.0%
TGTCGACGAGCCTACCTCTG+AGG - chr1_1:3221589-3221608 Msa0001540:intron 60.0%
GGGTTACAGGAAGGATGCCG+CGG - chr1_1:3223040-3223059 Msa0001540:intron 60.0%
GGTTACAGGAAGGATGCCGC+GGG - chr1_1:3223041-3223060 Msa0001540:intron 60.0%
CTGCACCTCTTACAAGCCCG+CGG + chr1_1:3223060-3223079 None:intergenic 60.0%
CCTCATCCGCACGACTGAGA+TGG + chr1_1:3223471-3223490 None:intergenic 60.0%
CCATCTCAGTCGTGCGGATG+AGG - chr1_1:3223468-3223487 Msa0001540:CDS 60.0%
CGGCCCCCAAAAGAAGCTCA+TGG + chr1_1:3223497-3223516 None:intergenic 60.0%
GGGGTGGAAGGAAGTTGCGG+TGG + chr1_1:3221434-3221453 None:intergenic 65.0%
GGATGCCGCGGGCTTGTAAG+AGG - chr1_1:3223052-3223071 Msa0001540:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3220649 3224534 3220649 ID=Msa0001540;Name=Msa0001540
chr1_1 mRNA 3220649 3224534 3220649 ID=Msa0001540-mRNA-1;Parent=Msa0001540;Name=Msa0001540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=310|1|1|1|1|1|6|292|565
chr1_1 exon 3220649 3221222 3220649 ID=Msa0001540-mRNA-1:exon:891;Parent=Msa0001540-mRNA-1
chr1_1 exon 3221319 3221519 3221319 ID=Msa0001540-mRNA-1:exon:890;Parent=Msa0001540-mRNA-1
chr1_1 exon 3221994 3222134 3221994 ID=Msa0001540-mRNA-1:exon:889;Parent=Msa0001540-mRNA-1
chr1_1 exon 3222477 3222707 3222477 ID=Msa0001540-mRNA-1:exon:888;Parent=Msa0001540-mRNA-1
chr1_1 exon 3223303 3224042 3223303 ID=Msa0001540-mRNA-1:exon:887;Parent=Msa0001540-mRNA-1
chr1_1 exon 3224122 3224534 3224122 ID=Msa0001540-mRNA-1:exon:886;Parent=Msa0001540-mRNA-1
chr1_1 five_prime_UTR 3224225 3224534 3224225 ID=Msa0001540-mRNA-1:five_prime_utr;Parent=Msa0001540-mRNA-1
chr1_1 CDS 3224122 3224224 3224122 ID=Msa0001540-mRNA-1:cds;Parent=Msa0001540-mRNA-1
chr1_1 CDS 3223303 3224042 3223303 ID=Msa0001540-mRNA-1:cds;Parent=Msa0001540-mRNA-1
chr1_1 CDS 3222477 3222707 3222477 ID=Msa0001540-mRNA-1:cds;Parent=Msa0001540-mRNA-1
chr1_1 CDS 3221994 3222134 3221994 ID=Msa0001540-mRNA-1:cds;Parent=Msa0001540-mRNA-1
chr1_1 CDS 3221319 3221519 3221319 ID=Msa0001540-mRNA-1:cds;Parent=Msa0001540-mRNA-1
chr1_1 CDS 3220941 3221222 3220941 ID=Msa0001540-mRNA-1:cds;Parent=Msa0001540-mRNA-1
chr1_1 three_prime_UTR 3220649 3220940 3220649 ID=Msa0001540-mRNA-1:three_prime_utr;Parent=Msa0001540-mRNA-1
Gene Sequence

>Msa0001540

ATGTGGTCATCGTCGTCGTCGTGTTTATTGCCACAATTCATCTGCAACCCAGACAGAATCCCTACCCACCGCCATCATCATCATCATCTCTTTCTTCTTCAATCACCCAAAACAACAATTACAAGACACTGTATTTTGTCTTCTTCATCAACGGCACTCCTTGATTTCAAATTTGATGCTCCTCCTGCTGAATCTGAAAACTCACCACCTTGGCCCTATGTCTCTCAGGCAAACTCCTCCTCCTCCTCATCTGTAGAATCACTTCTTACTAGTGAAGACGCTGTTATAGCTGCTGCTGCTTCTGAAGCTCTTACTCTTGCTAAGGCTGCTGCAAAGCTTGCAAAGGATGCTACTCTCTTATTCAATAACAACCCCCCACAACATAATCAACAACCACCGCAACTTCCTTCCACCCCTGAAAATTTACTTCTCAAATGGGTTCAACACATGGAAGCAGCCGAAGATGCTGTATCCATTGCCACTGGACCAGCAGGACCAGATATAATGGAACATCTTCACATTAGCCCCAACCAAGAGGATGACTTTAATGATGTCGACGAGCCTACCTCTGAGGAACTTGAAGATGTAGAGGAACAACTTTTCGATACTAGTATAGATGCAAGATCCGGCCGCCAAACAGAAAGAAAAGCCAGAAGAGTCAGAGCTTCTGGGAAGGCTGCCACAAACATCGTCTCCTTCAAGTCTGGTTCCACCACCAGGAAAAAGCGTGTTCGTACACAAGAGGTTGACTATTCTGATCCATTGCGTTACTTAAGAACAACAACTAGAACTACAAGGCTTCTCACTCCATCCGAAGAAATTAAGTTCTCTGAAGGAATACAGGATCTCATAAAGCTCGAAAAACTTCAAGAGGACCTTGCAGAAAAATGTGGCGGCCAGCCCACATTTGCTCAATGGGCTACAATGGCAGGGGTAGATCAAAAGACCCTAAGAAAACGTTTGAATTATGGTGTATTTTGCAAAGAAAAAATGATTAAAAGCAATATACGACTTGTCATATCAGTTGCTAAGAATTATCAGGGATCTGGGATGAGTCTGCAAGATCTGGTCCAGGAAGGATGCCGCGGGCTTGTAAGAGGTGCAGAGAAGTATGATGCTTCTAAGGGTTTTAAGTTCTCAACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAATCACTTTCTGTTCAGTCAAGGACTATTCGCTTGCCATTCCACATGGTGGGGGCAACTTACAAAGTGAAGGAGGCAAGAAAACAGTTGTACAGTGAAAATGGAAGACAACCTGACGATGAAGAAGTTGCCGAAGCAACTGGGCTGTCGATGAAGAGGCTTAGTGCTGTCCTTTTGACCCCAAAAGCTCCCAGATCTCTAGAACAGAAAGTTGGGATCAACCAGAGTCTTAAACTTTCAGAAGTACTTGCTGATCCTGAAGCTGAAACAGCCGAAGAACAGCTCATTAAGCAGTTCATGAAAAAGGACCTGGAAAAGGTATTGGACAGTCTCAATCCTAGAGAGAAACAGGTGATTAAATGGAGATTTGGTATGGATGATGGAAGGATGAAGACACTGCAAGAGATTGGGGAAATGATGGGTGTAAGTAGGGAGAGAATTAGACAAATTGAGTCATGTGCTTTTAGGAAGCTTAAAAATAAGAAGAGAGCCAAGCATTTGCAGCAGTATTTTGTTTCATAA

Protein sequence

>Msa0001540

MWSSSSSCLLPQFICNPDRIPTHRHHHHHLFLLQSPKTTITRHCILSSSSTALLDFKFDAPPAESENSPPWPYVSQANSSSSSSVESLLTSEDAVIAAAASEALTLAKAAAKLAKDATLLFNNNPPQHNQQPPQLPSTPENLLLKWVQHMEAAEDAVSIATGPAGPDIMEHLHISPNQEDDFNDVDEPTSEELEDVEEQLFDTSIDARSGRQTERKARRVRASGKAATNIVSFKSGSTTRKKRVRTQEVDYSDPLRYLRTTTRTTRLLTPSEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIKWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQYFVS*