Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235140 | XP_003626805.1 | 97.778 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 9.74e-91 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235140 | sp|Q9M1C2|CH101_ARATH | 60.432 | 139 | 50 | 3 | 1 | 135 | 1 | 138 | 5.41e-55 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235140 | G7LDE7 | 97.778 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 4.65e-91 | 269 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001540 | Msa1235140 | 0.836931 | 7.008300e-57 | -8.615850e-47 |
| Msa0025830 | Msa1235140 | 0.813327 | 2.707796e-51 | -8.615850e-47 |
| Msa0049990 | Msa1235140 | 0.858339 | 8.818311e-63 | -8.615850e-47 |
| Msa0061320 | Msa1235140 | 0.803312 | 3.702156e-49 | -8.615850e-47 |
| Msa0073350 | Msa1235140 | 0.811297 | 7.511228e-51 | -8.615850e-47 |
| Msa0091550 | Msa1235140 | 0.816486 | 5.395425e-52 | -8.615850e-47 |
| Msa0092660 | Msa1235140 | 0.803364 | 3.612100e-49 | -8.615850e-47 |
| Msa0092730 | Msa1235140 | 0.803319 | 3.688842e-49 | -8.615850e-47 |
| Msa0094700 | Msa1235140 | 0.818419 | 1.979610e-52 | -8.615850e-47 |
| Msa0112290 | Msa1235140 | 0.834587 | 2.750193e-56 | -8.615850e-47 |
| Msa0115410 | Msa1235140 | 0.810571 | 1.078675e-50 | -8.615850e-47 |
| Msa0604700 | Msa1235140 | 0.802378 | 5.772630e-49 | -8.615850e-47 |
| Msa0624700 | Msa1235140 | 0.813895 | 2.030289e-51 | -8.615850e-47 |
| Msa0629500 | Msa1235140 | 0.821500 | 3.905861e-53 | -8.615850e-47 |
| Msa0629820 | Msa1235140 | 0.803630 | 3.181263e-49 | -8.615850e-47 |
| Msa0629980 | Msa1235140 | 0.817156 | 3.817190e-52 | -8.615850e-47 |
| Msa0637850 | Msa1235140 | 0.804094 | 2.547535e-49 | -8.615850e-47 |
| Msa0639370 | Msa1235140 | 0.836730 | 7.883310e-57 | -8.615850e-47 |
| Msa0645820 | Msa1235140 | 0.818966 | 1.487521e-52 | -8.615850e-47 |
| Msa0653090 | Msa1235140 | 0.822856 | 1.893498e-53 | -8.615850e-47 |
| Msa0661490 | Msa1235140 | 0.829444 | 5.129083e-55 | -8.615850e-47 |
| Msa0677030 | Msa1235140 | 0.806969 | 6.352740e-50 | -8.615850e-47 |
| Msa0682460 | Msa1235140 | 0.817005 | 4.127209e-52 | -8.615850e-47 |
| Msa0685540 | Msa1235140 | 0.800887 | 1.166960e-48 | -8.615850e-47 |
| Msa0687540 | Msa1235140 | 0.814982 | 1.167629e-51 | -8.615850e-47 |
| Msa0695470 | Msa1235140 | 0.803102 | 4.092471e-49 | -8.615850e-47 |
| Msa0703760 | Msa1235140 | 0.824690 | 7.040218e-54 | -8.615850e-47 |
| Msa0706490 | Msa1235140 | 0.819352 | 1.215186e-52 | -8.615850e-47 |
| Msa0710950 | Msa1235140 | 0.813377 | 2.639214e-51 | -8.615850e-47 |
| Msa0716430 | Msa1235140 | 0.808283 | 3.341968e-50 | -8.615850e-47 |
| Msa0748890 | Msa1235140 | 0.800792 | 1.220680e-48 | -8.615850e-47 |
| Msa0752290 | Msa1235140 | 0.819611 | 1.060291e-52 | -8.615850e-47 |
| Msa0756470 | Msa1235140 | 0.800719 | 1.263309e-48 | -8.615850e-47 |
| Msa0779790 | Msa1235140 | 0.822839 | 1.910563e-53 | -8.615850e-47 |
| Msa0790180 | Msa1235140 | 0.833275 | 5.856992e-56 | -8.615850e-47 |
| Msa0795850 | Msa1235140 | 0.822134 | 2.785995e-53 | -8.615850e-47 |
| Msa0810370 | Msa1235140 | 0.817084 | 3.962120e-52 | -8.615850e-47 |
| Msa0824140 | Msa1235140 | 0.802581 | 5.241609e-49 | -8.615850e-47 |
| Msa0832270 | Msa1235140 | 0.805890 | 1.072902e-49 | -8.615850e-47 |
| Msa0139050 | Msa1235140 | 0.829195 | 5.895726e-55 | -8.615850e-47 |
| Msa0144340 | Msa1235140 | 0.803887 | 2.812827e-49 | -8.615850e-47 |
| Msa0152380 | Msa1235140 | 0.802445 | 5.590263e-49 | -8.615850e-47 |
| Msa0164540 | Msa1235140 | 0.802629 | 5.123817e-49 | -8.615850e-47 |
| Msa0171930 | Msa1235140 | 0.815403 | 9.413445e-52 | -8.615850e-47 |
| Msa0173610 | Msa1235140 | 0.802458 | 5.557220e-49 | -8.615850e-47 |
| Msa0175280 | Msa1235140 | 0.836066 | 1.163653e-56 | -8.615850e-47 |
| Msa0176710 | Msa1235140 | 0.803425 | 3.507305e-49 | -8.615850e-47 |
| Msa0179200 | Msa1235140 | 0.819449 | 1.154533e-52 | -8.615850e-47 |
| Msa0204030 | Msa1235140 | 0.806016 | 1.009475e-49 | -8.615850e-47 |
| Msa0215890 | Msa1235140 | 0.808867 | 2.507448e-50 | -8.615850e-47 |
| Msa0217300 | Msa1235140 | 0.823245 | 1.536401e-53 | -8.615850e-47 |
| Msa0235180 | Msa1235140 | 0.825172 | 5.417573e-54 | -8.615850e-47 |
| Msa1235140 | Msa1243860 | 0.807108 | 5.937821e-50 | -8.615850e-47 |
| Msa1235140 | Msa1244380 | 0.826200 | 3.090917e-54 | -8.615850e-47 |
| Msa1235140 | Msa1257520 | 0.809000 | 2.349275e-50 | -8.615850e-47 |
| Msa1235140 | Msa1258940 | 0.812893 | 3.371813e-51 | -8.615850e-47 |
| Msa1235140 | Msa1269550 | 0.802295 | 6.002375e-49 | -8.615850e-47 |
| Msa1235140 | Msa1272200 | 0.876767 | 1.074432e-68 | -8.615850e-47 |
| Msa1235140 | Msa1279700 | 0.816337 | 5.825496e-52 | -8.615850e-47 |
| Msa1235140 | Msa1293060 | 0.811934 | 5.460665e-51 | -8.615850e-47 |
| Msa1235140 | Msa1293530 | 0.813998 | 1.926582e-51 | -8.615850e-47 |
| Msa1235140 | Msa1294940 | 0.803376 | 3.590465e-49 | -8.615850e-47 |
| Msa1235140 | Msa1302750 | 0.831194 | 1.916908e-55 | -8.615850e-47 |
| Msa1235140 | Msa1303810 | 0.830430 | 2.949153e-55 | -8.615850e-47 |
| Msa1235140 | Msa1305650 | 0.838807 | 2.308872e-57 | -8.615850e-47 |
| Msa1235140 | Msa1318180 | 0.800935 | 1.141328e-48 | -8.615850e-47 |
| Msa1235140 | Msa1329290 | 0.823537 | 1.313006e-53 | -8.615850e-47 |
| Msa1235140 | Msa1344430 | 0.803557 | 3.293690e-49 | -8.615850e-47 |
| Msa1235140 | Msa1344940 | 0.801534 | 8.607104e-49 | -8.615850e-47 |
| Msa1235140 | Msa1356410 | 0.817546 | 3.117512e-52 | -8.615850e-47 |
| Msa1235140 | Msa1369900 | 0.805975 | 1.029776e-49 | -8.615850e-47 |
| Msa1235140 | Msa1375600 | 0.846705 | 1.836120e-59 | -8.615850e-47 |
| Msa1235140 | Msa1376560 | 0.831755 | 1.394131e-55 | -8.615850e-47 |
| Msa1235140 | Msa1398840 | 0.806923 | 6.496325e-50 | -8.615850e-47 |
| Msa1235140 | Msa1406550 | 0.800884 | 1.169041e-48 | -8.615850e-47 |
| Msa1235140 | Msa1407710 | 0.821377 | 4.169938e-53 | -8.615850e-47 |
| Msa1235140 | Msa1411690 | 0.835363 | 1.753329e-56 | -8.615850e-47 |
| Msa1235140 | Msa1415250 | 0.850358 | 1.788584e-60 | -8.615850e-47 |
| Msa1235140 | Msa1416460 | 0.807359 | 5.254668e-50 | -8.615850e-47 |
| Msa1235140 | Msa1418600 | 0.875938 | 2.075283e-68 | -8.615850e-47 |
| Msa1235140 | Msa1422900 | 0.807035 | 6.153255e-50 | -8.615850e-47 |
| Msa1235140 | Msa1425510 | 0.829781 | 4.248859e-55 | -8.615850e-47 |
| Msa1235140 | Msa1437320 | 0.833327 | 5.683089e-56 | -8.615850e-47 |
| Msa1235140 | Msa1438380 | 0.828444 | 8.958034e-55 | -8.615850e-47 |
| Msa0367370 | Msa1235140 | 0.835731 | 1.414692e-56 | -8.615850e-47 |
| Msa0379390 | Msa1235140 | 0.826157 | 3.164867e-54 | -8.615850e-47 |
| Msa0379450 | Msa1235140 | 0.844966 | 5.448741e-59 | -8.615850e-47 |
| Msa0380360 | Msa1235140 | 0.823666 | 1.225041e-53 | -8.615850e-47 |
| Msa0380390 | Msa1235140 | 0.811655 | 6.282042e-51 | -8.615850e-47 |
| Msa0380440 | Msa1235140 | 0.840321 | 9.329591e-58 | -8.615850e-47 |
| Msa0383110 | Msa1235140 | 0.811025 | 8.605791e-51 | -8.615850e-47 |
| Msa0399180 | Msa1235140 | 0.805206 | 1.492648e-49 | -8.615850e-47 |
| Msa0419030 | Msa1235140 | 0.828428 | 9.041458e-55 | -8.615850e-47 |
| Msa0423820 | Msa1235140 | 0.855252 | 7.147150e-62 | -8.615850e-47 |
| Msa0425150 | Msa1235140 | 0.802505 | 5.435631e-49 | -8.615850e-47 |
| Msa0438990 | Msa1235140 | 0.819080 | 1.401059e-52 | -8.615850e-47 |
| Msa0446480 | Msa1235140 | 0.805713 | 1.168948e-49 | -8.615850e-47 |
| Msa0455200 | Msa1235140 | 0.847020 | 1.505762e-59 | -8.615850e-47 |
| Msa0456940 | Msa1235140 | 0.802348 | 5.853705e-49 | -8.615850e-47 |
| Msa0473010 | Msa1235140 | 0.812335 | 4.465777e-51 | -8.615850e-47 |
| Msa1002980 | Msa1235140 | 0.801312 | 9.555839e-49 | -8.615850e-47 |
| Msa1011240 | Msa1235140 | 0.811891 | 5.579205e-51 | -8.615850e-47 |
| Msa1032140 | Msa1235140 | 0.826349 | 2.849123e-54 | -8.615850e-47 |
| Msa1033120 | Msa1235140 | 0.855052 | 8.172492e-62 | -8.615850e-47 |
| Msa1052600 | Msa1235140 | 0.801805 | 7.572961e-49 | -8.615850e-47 |
| Msa1067430 | Msa1235140 | 0.850223 | 1.951210e-60 | -8.615850e-47 |
| Msa1074730 | Msa1235140 | 0.837557 | 4.846748e-57 | -8.615850e-47 |
| Msa1080620 | Msa1235140 | 0.815142 | 1.075833e-51 | -8.615850e-47 |
| Msa1080690 | Msa1235140 | 0.819008 | 1.455022e-52 | -8.615850e-47 |
| Msa1084150 | Msa1235140 | 0.808499 | 3.006258e-50 | -8.615850e-47 |
| Msa0258380 | Msa1235140 | 0.826675 | 2.382021e-54 | -8.615850e-47 |
| Msa0258410 | Msa1235140 | 0.832789 | 7.733606e-56 | -8.615850e-47 |
| Msa0265440 | Msa1235140 | 0.808807 | 2.583694e-50 | -8.615850e-47 |
| Msa0269830 | Msa1235140 | 0.828755 | 7.538174e-55 | -8.615850e-47 |
| Msa0273550 | Msa1235140 | 0.810376 | 1.188851e-50 | -8.615850e-47 |
| Msa0280140 | Msa1235140 | 0.818556 | 1.842729e-52 | -8.615850e-47 |
| Msa0282070 | Msa1235140 | 0.866716 | 2.326790e-65 | -8.615850e-47 |
| Msa0282090 | Msa1235140 | 0.863278 | 2.790579e-64 | -8.615850e-47 |
| Msa0285740 | Msa1235140 | 0.801066 | 1.072901e-48 | -8.615850e-47 |
| Msa0288360 | Msa1235140 | 0.811238 | 7.736585e-51 | -8.615850e-47 |
| Msa0308430 | Msa1235140 | 0.838929 | 2.146808e-57 | -8.615850e-47 |
| Msa0313550 | Msa1235140 | 0.817877 | 2.624718e-52 | -8.615850e-47 |
| Msa0313800 | Msa1235140 | 0.805172 | 1.517568e-49 | -8.615850e-47 |
| Msa0321060 | Msa1235140 | 0.800731 | 1.256078e-48 | -8.615850e-47 |
| Msa0323990 | Msa1235140 | 0.836131 | 1.120114e-56 | -8.615850e-47 |
| Msa0334780 | Msa1235140 | 0.811158 | 8.051102e-51 | -8.615850e-47 |
| Msa0335740 | Msa1235140 | 0.827900 | 1.211541e-54 | -8.615850e-47 |
| Msa0362840 | Msa1235140 | 0.859287 | 4.590598e-63 | -8.615850e-47 |
| Msa1110350 | Msa1235140 | 0.833349 | 5.613681e-56 | -8.615850e-47 |
| Msa1118390 | Msa1235140 | 0.803877 | 2.825894e-49 | -8.615850e-47 |
| Msa1126310 | Msa1235140 | 0.812224 | 4.721001e-51 | -8.615850e-47 |
| Msa1127510 | Msa1235140 | 0.803376 | 3.590429e-49 | -8.615850e-47 |
| Msa1154020 | Msa1235140 | 0.829142 | 6.073356e-55 | -8.615850e-47 |
| Msa1161390 | Msa1235140 | 0.802473 | 5.518159e-49 | -8.615850e-47 |
| Msa1167160 | Msa1235140 | 0.816223 | 6.176815e-52 | -8.615850e-47 |
| Msa1198870 | Msa1235140 | 0.803910 | 2.781965e-49 | -8.615850e-47 |
| Msa1202170 | Msa1235140 | 0.813833 | 2.094874e-51 | -8.615850e-47 |
| Msa1208630 | Msa1235140 | 0.836646 | 8.282314e-57 | -8.615850e-47 |
| Msa1208750 | Msa1235140 | 0.807716 | 4.411960e-50 | -8.615850e-47 |
| Msa1209150 | Msa1235140 | 0.823520 | 1.325376e-53 | -8.615850e-47 |
| Msa0485350 | Msa1235140 | 0.815869 | 7.409134e-52 | -8.615850e-47 |
| Msa0503120 | Msa1235140 | 0.855622 | 5.575020e-62 | -8.615850e-47 |
| Msa0504740 | Msa1235140 | 0.804236 | 2.379871e-49 | -8.615850e-47 |
| Msa0506740 | Msa1235140 | 0.820566 | 6.408714e-53 | -8.615850e-47 |
| Msa0510540 | Msa1235140 | 0.828685 | 7.837443e-55 | -8.615850e-47 |
| Msa0515730 | Msa1235140 | 0.809234 | 2.092915e-50 | -8.615850e-47 |
| Msa0524570 | Msa1235140 | 0.814471 | 1.515210e-51 | -8.615850e-47 |
| Msa0555940 | Msa1235140 | 0.832961 | 7.011215e-56 | -8.615850e-47 |
| Msa0557770 | Msa1235140 | 0.827575 | 1.450162e-54 | -8.615850e-47 |
| Msa0567290 | Msa1235140 | 0.820980 | 5.147612e-53 | -8.615850e-47 |
| Msa0583180 | Msa1235140 | 0.832007 | 1.208149e-55 | -8.615850e-47 |
| Msa0864150 | Msa1235140 | 0.826122 | 3.225003e-54 | -8.615850e-47 |
| Msa0879820 | Msa1235140 | 0.805473 | 1.312452e-49 | -8.615850e-47 |
| Msa0881050 | Msa1235140 | 0.804132 | 2.501839e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235140 | MtrunA17_Chr8g0336931 | 97.778 | 135 | 3 | 0 | 1 | 135 | 1 | 135 | 8.96e-95 | 269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235140 | AT3G60210.1 | 60.432 | 139 | 50 | 3 | 1 | 135 | 1 | 138 | 5.50e-56 | 171 |
| Msa1235140 | AT2G44650.1 | 58.273 | 139 | 54 | 2 | 1 | 135 | 1 | 139 | 2.79e-53 | 164 |
Find 60 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAGAATGGATTGGAATT+TGG | 0.115284 | 8_2:-12914116 | None:intergenic |
| CAAAGAATGGATTGGAATTT+GGG | 0.188113 | 8_2:-12914115 | None:intergenic |
| CAGCCTCGGCACCAACATTT+AGG | 0.253224 | 8_2:-12915695 | None:intergenic |
| TATTCTTTGTTGACATTCCT+TGG | 0.313698 | 8_2:+12918038 | Msa1235140:three_prime_UTR |
| GTATTCATGGCAAATGTATT+AGG | 0.331892 | 8_2:+12917979 | Msa1235140:three_prime_UTR |
| TAAGAAATGGGAACCCTCTA+AGG | 0.340240 | 8_2:+12914397 | Msa1235140:CDS |
| AGGTTGTGCCTCAGGCTGAT+AGG | 0.348377 | 8_2:+12914514 | Msa1235140:intron |
| CATTAAATCAAGTGACTTGT+TGG | 0.348829 | 8_2:+12917893 | Msa1235140:CDS |
| TTATGATAATAATGTATTCA+TGG | 0.353406 | 8_2:+12917966 | Msa1235140:three_prime_UTR |
| AGAAATTGGAATAACCTTAG+AGG | 0.365531 | 8_2:-12914411 | None:intergenic |
| TTAATGCAATTGCTAAGAAA+TGG | 0.381136 | 8_2:+12914384 | Msa1235140:CDS |
| GGCCGTCGTTGAGTAGGGTT+TGG | 0.386350 | 8_2:+12917914 | Msa1235140:exon |
| ATTCTTTGTTGACATTCCTT+GGG | 0.391711 | 8_2:+12918039 | Msa1235140:three_prime_UTR |
| GAATTATACTTGGGAGTCTC+TGG | 0.395066 | 8_2:-12914245 | None:intergenic |
| TGAATACATTATTATCATAA+AGG | 0.395561 | 8_2:-12917963 | None:intergenic |
| CTCAAATTTAACAGCTGACT+TGG | 0.404760 | 8_2:-12915565 | None:intergenic |
| TGGATTGCAGGTTGTGCCTC+AGG | 0.408276 | 8_2:+12914506 | Msa1235140:intron |
| CACCGACATAAATGCTTATG+AGG | 0.413729 | 8_2:+12917574 | Msa1235140:CDS |
| CTTGTTGGCCGTCGTTGAGT+AGG | 0.414558 | 8_2:+12917908 | Msa1235140:CDS |
| TTGTGAAGGAAGGGAGTTGT+TGG | 0.416342 | 8_2:-12914198 | None:intergenic |
| TTTGAAGAGGAACTCTTTGA+AGG | 0.442390 | 8_2:+12914361 | Msa1235140:CDS |
| TTATCTCTTATCCATTATCA+TGG | 0.443311 | 8_2:+12914155 | Msa1235140:exon |
| AAATGTGGAAGCCATGATAA+TGG | 0.443462 | 8_2:-12914166 | None:intergenic |
| TTAACATTAATCAAAATCCT+TGG | 0.446289 | 8_2:+12918244 | Msa1235140:three_prime_UTR |
| AGTGACGCAATGATACCTTT+AGG | 0.447922 | 8_2:+12918195 | Msa1235140:three_prime_UTR |
| AATGAACTGTTATCAATCAT+TGG | 0.459294 | 8_2:+12918007 | Msa1235140:three_prime_UTR |
| TAATGCAATTGCTAAGAAAT+GGG | 0.473150 | 8_2:+12914385 | Msa1235140:CDS |
| GGTTGTGCCTCAGGCTGATA+GGG | 0.488435 | 8_2:+12914515 | Msa1235140:intron |
| GTGAACTGAACAACAAAGAA+TGG | 0.490758 | 8_2:-12914128 | None:intergenic |
| TGATACCTTTAGGCTGGAGT+TGG | 0.494840 | 8_2:+12918205 | Msa1235140:three_prime_UTR |
| TTGTTGGCCGTCGTTGAGTA+GGG | 0.502146 | 8_2:+12917909 | Msa1235140:CDS |
| CTGAACAACAAAGAATGGAT+TGG | 0.502168 | 8_2:-12914123 | None:intergenic |
| AGGTATCATTGCGTCACTAA+AGG | 0.503317 | 8_2:-12918190 | None:intergenic |
| AAATTTGAGCGATATCTTGT+GGG | 0.511491 | 8_2:+12915579 | Msa1235140:CDS |
| GAAATTGGAATAACCTTAGA+GGG | 0.512239 | 8_2:-12914410 | None:intergenic |
| TAAATTTGAGCGATATCTTG+TGG | 0.516085 | 8_2:+12915578 | Msa1235140:CDS |
| TAGGGTTCTTATTCGTCTTG+AGG | 0.524050 | 8_2:+12914533 | Msa1235140:CDS |
| TTGTCTCAGGTCCTAAATGT+TGG | 0.526187 | 8_2:+12915684 | Msa1235140:intron |
| ACGCAATGATACCTTTAGGC+TGG | 0.535276 | 8_2:+12918199 | Msa1235140:three_prime_UTR |
| TTCTTTGTTGACATTCCTTG+GGG | 0.545808 | 8_2:+12918040 | Msa1235140:three_prime_UTR |
| TCAAATTTAACAGCTGACTT+GGG | 0.548423 | 8_2:-12915564 | None:intergenic |
| TGTTGGTATGGTGAGAAATG+TGG | 0.554797 | 8_2:-12914181 | None:intergenic |
| GAGGCTGAAAATGTAAAAGC+TGG | 0.554966 | 8_2:+12915711 | Msa1235140:CDS |
| TATACTTGGGAGTCTCTGGT+TGG | 0.556109 | 8_2:-12914241 | None:intergenic |
| GATTTCCAACTCCAGCCTAA+AGG | 0.557997 | 8_2:-12918210 | None:intergenic |
| TGTCAAGATTGAAGACAAGC+GGG | 0.586481 | 8_2:-12914035 | None:intergenic |
| CTGGTTGGAGAAAGAAGCGG+TGG | 0.589531 | 8_2:-12914226 | None:intergenic |
| TTTGGGCAGAAAACTGCTGG+TGG | 0.594539 | 8_2:+12915531 | Msa1235140:intron |
| AAGGAAGGGAGTTGTTGGTA+TGG | 0.597282 | 8_2:-12914193 | None:intergenic |
| AAATGTAAAAGCTGGCTCGA+AGG | 0.601859 | 8_2:+12915719 | Msa1235140:CDS |
| AAAGAATGGATTGGAATTTG+GGG | 0.602324 | 8_2:-12914114 | None:intergenic |
| ATGTCAAGATTGAAGACAAG+CGG | 0.603037 | 8_2:-12914036 | None:intergenic |
| GGTCCTAAATGTTGGTGCCG+AGG | 0.611786 | 8_2:+12915692 | Msa1235140:intron |
| CTGCTCTTTGTCTCACAAAG+CGG | 0.654255 | 8_2:-12917937 | None:intergenic |
| GGTTGGAGAAAGAAGCGGTG+GGG | 0.659685 | 8_2:-12914224 | None:intergenic |
| AACCTCATAAGCATTTATGT+CGG | 0.663411 | 8_2:-12917576 | None:intergenic |
| GGCCAAACCCTACTCAACGA+CGG | 0.678555 | 8_2:-12917916 | None:intergenic |
| TGGTTGGAGAAAGAAGCGGT+GGG | 0.681233 | 8_2:-12914225 | None:intergenic |
| ATAAGAACCCTATCAGCCTG+AGG | 0.720606 | 8_2:-12914522 | None:intergenic |
| TCTCTGGTTGGAGAAAGAAG+CGG | 0.732198 | 8_2:-12914229 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAACTTTTTTTTCATTT+GGG | + | chr8_2:12914327-12914346 | Msa1235140:intron | 10.0% |
| !!! | TTATAATTTTAAATATGGAA+TGG | - | chr8_2:12917526-12917545 | None:intergenic | 10.0% |
| !!! | GTATTAACTTTTTTTTCATT+TGG | + | chr8_2:12914326-12914345 | Msa1235140:intron | 15.0% |
| !!! | TATGATTTTTGGTTATTTTT+TGG | + | chr8_2:12914486-12914505 | Msa1235140:intron | 15.0% |
| !! | GTATATAACAATAAGTTATA+GGG | - | chr8_2:12915366-12915385 | None:intergenic | 15.0% |
| !! | AGTATATAACAATAAGTTAT+AGG | - | chr8_2:12915367-12915386 | None:intergenic | 15.0% |
| !!! | TGATTGTGAATATAATTTTT+TGG | + | chr8_2:12915513-12915532 | Msa1235140:intron | 15.0% |
| !!! | GATTGTGAATATAATTTTTT+GGG | + | chr8_2:12915514-12915533 | Msa1235140:intron | 15.0% |
| !!! | TTTTGTAATATGAGATATTT+CGG | + | chr8_2:12916822-12916841 | Msa1235140:intron | 15.0% |
| !! | TTAAATGAATTAATCAATGT+CGG | + | chr8_2:12917645-12917664 | Msa1235140:intron | 15.0% |
| !! | TGAATACATTATTATCATAA+AGG | - | chr8_2:12917966-12917985 | None:intergenic | 15.0% |
| !! | TTATGATAATAATGTATTCA+TGG | + | chr8_2:12917966-12917985 | Msa1235140:three_prime_UTR | 15.0% |
| !! | ATTAATGTTAAAAAGAGATA+AGG | - | chr8_2:12918235-12918254 | None:intergenic | 15.0% |
| !! | TGGATAATAAACCTAAAAAA+GGG | + | chr8_2:12914071-12914090 | Msa1235140:five_prime_UTR | 20.0% |
| !! | CTTCGTTAAAATGAATAAAA+GGG | - | chr8_2:12914307-12914326 | None:intergenic | 20.0% |
| !! | ACTTCGTTAAAATGAATAAA+AGG | - | chr8_2:12914308-12914327 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGCATATGATTTT+TGG | + | chr8_2:12914475-12914494 | Msa1235140:intron | 20.0% |
| !!! | AATTTTTTTGGATAAGATTG+TGG | - | chr8_2:12914575-12914594 | None:intergenic | 20.0% |
| !!! | TAAGGGAATATTTCTTTTTT+TGG | - | chr8_2:12915226-12915245 | None:intergenic | 20.0% |
| !! | CAAATATAGAAACAATGTAT+CGG | - | chr8_2:12915304-12915323 | None:intergenic | 20.0% |
| !! | TTGTTTAATTACTATGAAAG+AGG | + | chr8_2:12915746-12915765 | Msa1235140:intron | 20.0% |
| !! | TTACTAATTAATTAGTTGTG+AGG | + | chr8_2:12916657-12916676 | Msa1235140:intron | 20.0% |
| !! | TTTGTAATATGAGATATTTC+GGG | + | chr8_2:12916823-12916842 | Msa1235140:intron | 20.0% |
| !!! | AATCATTATGGTAATTTGTT+GGG | + | chr8_2:12916908-12916927 | Msa1235140:intron | 20.0% |
| !! | ATTTATTAATCAAATGACCA+TGG | + | chr8_2:12917318-12917337 | Msa1235140:intron | 20.0% |
| !! | TAGTTCAAATGACAAAATAA+AGG | + | chr8_2:12917454-12917473 | Msa1235140:intron | 20.0% |
| !! | AAATAAAGGAAAATAGTTAG+TGG | + | chr8_2:12917468-12917487 | Msa1235140:intron | 20.0% |
| !!! | AATCATAATTATTCTTTTGC+AGG | + | chr8_2:12917544-12917563 | Msa1235140:intron | 20.0% |
| !! | ACATTTGTACTTATGTATAA+AGG | + | chr8_2:12917611-12917630 | Msa1235140:intron | 20.0% |
| !!! | AATTCTAATTTGTAACTCAA+CGG | + | chr8_2:12917789-12917808 | Msa1235140:intron | 20.0% |
| ! | GTGGATAATAAACCTAAAAA+AGG | + | chr8_2:12914070-12914089 | Msa1235140:five_prime_UTR | 25.0% |
| ! | TTATCTCTTATCCATTATCA+TGG | + | chr8_2:12914155-12914174 | Msa1235140:exon | 25.0% |
| ! | GTAGAAGAAGAATTATACTT+GGG | - | chr8_2:12914257-12914276 | None:intergenic | 25.0% |
| ! | AGTAGAAGAAGAATTATACT+TGG | - | chr8_2:12914258-12914277 | None:intergenic | 25.0% |
| ! | TTAATGCAATTGCTAAGAAA+TGG | + | chr8_2:12914384-12914403 | Msa1235140:CDS | 25.0% |
| ! | TAATGCAATTGCTAAGAAAT+GGG | + | chr8_2:12914385-12914404 | Msa1235140:CDS | 25.0% |
| ! | CAGAAAATGAAAAGAGAAAT+TGG | - | chr8_2:12914428-12914447 | None:intergenic | 25.0% |
| !! | CAATTTCTCTTTTCATTTTC+TGG | + | chr8_2:12914426-12914445 | Msa1235140:intron | 25.0% |
| !!! | TCTGGTTTTTTGTTTTTGAA+AGG | + | chr8_2:12914444-12914463 | Msa1235140:intron | 25.0% |
| ! | ATTGAATGCACAAAGTTTAA+GGG | - | chr8_2:12915243-12915262 | None:intergenic | 25.0% |
| ! | AATTGAATGCACAAAGTTTA+AGG | - | chr8_2:12915244-12915263 | None:intergenic | 25.0% |
| !!! | CGATACATTGTTTCTATATT+TGG | + | chr8_2:12915302-12915321 | Msa1235140:intron | 25.0% |
| !! | ATTTTACTATAATGTCCGTA+AGG | + | chr8_2:12915454-12915473 | Msa1235140:intron | 25.0% |
| ! | TGTAATTGGCACTTATAAAT+TGG | + | chr8_2:12915482-12915501 | Msa1235140:intron | 25.0% |
| ! | ATTATATTCACAATCATGCA+CGG | - | chr8_2:12915509-12915528 | None:intergenic | 25.0% |
| ! | AGTAAGTATACATATTGCAT+AGG | + | chr8_2:12915605-12915624 | Msa1235140:intron | 25.0% |
| ! | TTTAATTACTATGAAAGAGG+TGG | + | chr8_2:12915749-12915768 | Msa1235140:intron | 25.0% |
| !! | ACTTTTAGCAATGAAAGTTT+AGG | + | chr8_2:12916476-12916495 | Msa1235140:intron | 25.0% |
| ! | ACACTTAAAATATGATGAGA+AGG | + | chr8_2:12916634-12916653 | Msa1235140:intron | 25.0% |
| !! | ATGTGATACAACATTTTTGA+AGG | + | chr8_2:12916849-12916868 | Msa1235140:intron | 25.0% |
| ! | AGACATTAGTTCAATCATTA+TGG | + | chr8_2:12916896-12916915 | Msa1235140:intron | 25.0% |
| !! | CAATCATTATGGTAATTTGT+TGG | + | chr8_2:12916907-12916926 | Msa1235140:intron | 25.0% |
| !!! | ATAACACAATTTTGAAGAAG+CGG | - | chr8_2:12917079-12917098 | None:intergenic | 25.0% |
| ! | TTATTTGTACAGTATCTATC+TGG | + | chr8_2:12917121-12917140 | Msa1235140:intron | 25.0% |
| ! | TATGAACAAGTTCATAACTT+GGG | - | chr8_2:12917187-12917206 | None:intergenic | 25.0% |
| ! | TTATGAACAAGTTCATAACT+TGG | - | chr8_2:12917188-12917207 | None:intergenic | 25.0% |
| !! | TTGTGTCTAAAGAAATTTTC+AGG | + | chr8_2:12917230-12917249 | Msa1235140:intron | 25.0% |
| !! | GTCTAAACTTGATAATATAG+AGG | + | chr8_2:12917366-12917385 | Msa1235140:intron | 25.0% |
| !!! | TATTGGTCTAATTGTTTTTC+AGG | + | chr8_2:12917839-12917858 | Msa1235140:intron | 25.0% |
| ! | AATGAACTGTTATCAATCAT+TGG | + | chr8_2:12918007-12918026 | Msa1235140:three_prime_UTR | 25.0% |
| !!! | GTGTTGTTAAACCCTTTTTT+AGG | - | chr8_2:12914085-12914104 | None:intergenic | 30.0% |
| !! | AAAGAATGGATTGGAATTTG+GGG | - | chr8_2:12914117-12914136 | None:intergenic | 30.0% |
| !! | CAAAGAATGGATTGGAATTT+GGG | - | chr8_2:12914118-12914137 | None:intergenic | 30.0% |
| !! | ACAAAGAATGGATTGGAATT+TGG | - | chr8_2:12914119-12914138 | None:intergenic | 30.0% |
| GAAATTGGAATAACCTTAGA+GGG | - | chr8_2:12914413-12914432 | None:intergenic | 30.0% | |
| AGAAATTGGAATAACCTTAG+AGG | - | chr8_2:12914414-12914433 | None:intergenic | 30.0% | |
| !!! | TTGGTTATTTTTTGGATTGC+AGG | + | chr8_2:12914494-12914513 | Msa1235140:intron | 30.0% |
| !! | CTTGTTATTGTTCCAATGTT+TGG | + | chr8_2:12914743-12914762 | Msa1235140:intron | 30.0% |
| ! | TGAATGTTGGATTTGTTTGT+AGG | + | chr8_2:12914813-12914832 | Msa1235140:intron | 30.0% |
| ! | GAATGTTGGATTTGTTTGTA+GGG | + | chr8_2:12914814-12914833 | Msa1235140:intron | 30.0% |
| AACACATCAAAATCATGACA+CGG | - | chr8_2:12914876-12914895 | None:intergenic | 30.0% | |
| !! | TGTCATGATTTTGATGTGTT+TGG | + | chr8_2:12914876-12914895 | Msa1235140:intron | 30.0% |
| AAAACTAAGCTGTATCACAT+TGG | + | chr8_2:12914918-12914937 | Msa1235140:intron | 30.0% | |
| CAATGAGGATATATCAGATT+AGG | - | chr8_2:12914958-12914977 | None:intergenic | 30.0% | |
| TGCAGTTATCTCGATAATAA+GGG | - | chr8_2:12915035-12915054 | None:intergenic | 30.0% | |
| TTGCAGTTATCTCGATAATA+AGG | - | chr8_2:12915036-12915055 | None:intergenic | 30.0% | |
| TACTCATAAGTCATGTAAGA+AGG | + | chr8_2:12915090-12915109 | Msa1235140:intron | 30.0% | |
| ! | ATGTAAGAAGGTATAGACTA+GGG | + | chr8_2:12915102-12915121 | Msa1235140:intron | 30.0% |
| TGATGCCATACATATAACTT+AGG | + | chr8_2:12915160-12915179 | Msa1235140:intron | 30.0% | |
| GATGCCATACATATAACTTA+GGG | + | chr8_2:12915161-12915180 | Msa1235140:intron | 30.0% | |
| ACTACCCTAAGTTATATGTA+TGG | - | chr8_2:12915168-12915187 | None:intergenic | 30.0% | |
| GTGAATGTGATTTAACTAGT+TGG | + | chr8_2:12915403-12915422 | Msa1235140:intron | 30.0% | |
| ! | TCAAATTTAACAGCTGACTT+GGG | - | chr8_2:12915567-12915586 | None:intergenic | 30.0% |
| TAAATTTGAGCGATATCTTG+TGG | + | chr8_2:12915578-12915597 | Msa1235140:CDS | 30.0% | |
| AAATTTGAGCGATATCTTGT+GGG | + | chr8_2:12915579-12915598 | Msa1235140:CDS | 30.0% | |
| TTCAGCTGTAAAACAACATA+AGG | - | chr8_2:12915633-12915652 | None:intergenic | 30.0% | |
| ! | ATTCCTTTTGTATTTGTCTC+AGG | + | chr8_2:12915671-12915690 | Msa1235140:intron | 30.0% |
| ! | AAAGGACCCTAATTTTACAA+TGG | + | chr8_2:12915884-12915903 | Msa1235140:intron | 30.0% |
| TGCTTGCCATTGTAAAATTA+GGG | - | chr8_2:12915893-12915912 | None:intergenic | 30.0% | |
| TTGCTTGCCATTGTAAAATT+AGG | - | chr8_2:12915894-12915913 | None:intergenic | 30.0% | |
| ! | TTACGTTGCTATTGTAAACT+GGG | - | chr8_2:12916015-12916034 | None:intergenic | 30.0% |
| TAAGTTACCGATATTCAATG+TGG | + | chr8_2:12916032-12916051 | Msa1235140:intron | 30.0% | |
| AATGAAAGTTTAGGTGTGTT+GGG | + | chr8_2:12916485-12916504 | Msa1235140:intron | 30.0% | |
| !! | AATTTTGAAGAAGCGGATAA+GGG | - | chr8_2:12917072-12917091 | None:intergenic | 30.0% |
| !!! | TGTTATTTTGCAACTCTGTT+TGG | + | chr8_2:12917093-12917112 | Msa1235140:intron | 30.0% |
| !!! | CATTTTTTAAGAACCACGTT+CGG | + | chr8_2:12917276-12917295 | Msa1235140:intron | 30.0% |
| !!! | ATTTTTTAAGAACCACGTTC+GGG | + | chr8_2:12917277-12917296 | Msa1235140:intron | 30.0% |
| AACCTCATAAGCATTTATGT+CGG | - | chr8_2:12917579-12917598 | None:intergenic | 30.0% | |
| ! | TATCTGAAGAACAACTTTTG+TGG | + | chr8_2:12917680-12917699 | Msa1235140:intron | 30.0% |
| ! | ATCTGAAGAACAACTTTTGT+GGG | + | chr8_2:12917681-12917700 | Msa1235140:intron | 30.0% |
| !!! | AATTGTTTTTCAGGTGGATT+TGG | + | chr8_2:12917848-12917867 | Msa1235140:intron | 30.0% |
| !!! | ATTGTTTTTCAGGTGGATTT+GGG | + | chr8_2:12917849-12917868 | Msa1235140:intron | 30.0% |
| ! | CATTAAATCAAGTGACTTGT+TGG | + | chr8_2:12917893-12917912 | Msa1235140:CDS | 30.0% |
| GTATTCATGGCAAATGTATT+AGG | + | chr8_2:12917979-12917998 | Msa1235140:three_prime_UTR | 30.0% | |
| TATTCTTTGTTGACATTCCT+TGG | + | chr8_2:12918038-12918057 | Msa1235140:three_prime_UTR | 30.0% | |
| ATTCTTTGTTGACATTCCTT+GGG | + | chr8_2:12918039-12918058 | Msa1235140:three_prime_UTR | 30.0% | |
| !!! | TCTGCTTTTTTCAATATTGC+TGG | + | chr8_2:12918091-12918110 | Msa1235140:three_prime_UTR | 30.0% |
| !!! | CTGCTTTTTTCAATATTGCT+GGG | + | chr8_2:12918092-12918111 | Msa1235140:three_prime_UTR | 30.0% |
| ATGTCAAGATTGAAGACAAG+CGG | - | chr8_2:12914039-12914058 | None:intergenic | 35.0% | |
| ! | CTTGACATTTTGTGACTTTG+TGG | + | chr8_2:12914051-12914070 | Msa1235140:five_prime_UTR | 35.0% |
| CTGAACAACAAAGAATGGAT+TGG | - | chr8_2:12914126-12914145 | None:intergenic | 35.0% | |
| GTGAACTGAACAACAAAGAA+TGG | - | chr8_2:12914131-12914150 | None:intergenic | 35.0% | |
| AAATGTGGAAGCCATGATAA+TGG | - | chr8_2:12914169-12914188 | None:intergenic | 35.0% | |
| !!! | GGTATGTTTCAGTTTTGAAG+AGG | + | chr8_2:12914348-12914367 | Msa1235140:intron | 35.0% |
| TTTGAAGAGGAACTCTTTGA+AGG | + | chr8_2:12914361-12914380 | Msa1235140:CDS | 35.0% | |
| GCAGTCTTGAAATAATCACT+AGG | + | chr8_2:12914771-12914790 | Msa1235140:intron | 35.0% | |
| CTAGGATAAGTTCAAACTGT+AGG | + | chr8_2:12914789-12914808 | Msa1235140:intron | 35.0% | |
| ! | GATTTGTTTGTAGGGATCAT+TGG | + | chr8_2:12914822-12914841 | Msa1235140:intron | 35.0% |
| !! | GTTGTTTTGTCAGTGAAAAC+AGG | + | chr8_2:12914997-12915016 | Msa1235140:intron | 35.0% |
| TCTCGATAATAAGGGAACAT+CGG | - | chr8_2:12915027-12915046 | None:intergenic | 35.0% | |
| ! | CATGTAAGAAGGTATAGACT+AGG | + | chr8_2:12915101-12915120 | Msa1235140:intron | 35.0% |
| TTTCTTAACATGTGCCCTAA+GGG | - | chr8_2:12915202-12915221 | None:intergenic | 35.0% | |
| ATTTCTTAACATGTGCCCTA+AGG | - | chr8_2:12915203-12915222 | None:intergenic | 35.0% | |
| CTTCTAAACTTGTGCCTTAA+GGG | + | chr8_2:12915325-12915344 | Msa1235140:intron | 35.0% | |
| !! | AATGTTAACTTGTGCCCTTA+AGG | - | chr8_2:12915342-12915361 | None:intergenic | 35.0% |
| ! | TCCGTAAGGTATTCTGTAAT+TGG | + | chr8_2:12915468-12915487 | Msa1235140:intron | 35.0% |
| GCCAATTACAGAATACCTTA+CGG | - | chr8_2:12915472-12915491 | None:intergenic | 35.0% | |
| CTCAAATTTAACAGCTGACT+TGG | - | chr8_2:12915568-12915587 | None:intergenic | 35.0% | |
| ! | AGCTTTTACATTTTCAGCCT+CGG | - | chr8_2:12915712-12915731 | None:intergenic | 35.0% |
| ! | TAGTTGACTCAGATTCTGAA+AGG | + | chr8_2:12915866-12915885 | Msa1235140:intron | 35.0% |
| TGACATAAATCCTAATCCCA+AGG | + | chr8_2:12915924-12915943 | Msa1235140:intron | 35.0% | |
| TGGTTACTTGTTTGTACCTT+GGG | - | chr8_2:12915943-12915962 | None:intergenic | 35.0% | |
| ATGGTTACTTGTTTGTACCT+TGG | - | chr8_2:12915944-12915963 | None:intergenic | 35.0% | |
| TTTCATCACCAATAACTCCA+GGG | - | chr8_2:12915970-12915989 | None:intergenic | 35.0% | |
| ATTTCATCACCAATAACTCC+AGG | - | chr8_2:12915971-12915990 | None:intergenic | 35.0% | |
| ! | TAAACTGGGAATTGGAGTTT+TGG | - | chr8_2:12916001-12916020 | None:intergenic | 35.0% |
| TGCTATTGTAAACTGGGAAT+TGG | - | chr8_2:12916009-12916028 | None:intergenic | 35.0% | |
| ! | CTTACGTTGCTATTGTAAAC+TGG | - | chr8_2:12916016-12916035 | None:intergenic | 35.0% |
| CCATAGACCACATTGAATAT+CGG | - | chr8_2:12916042-12916061 | None:intergenic | 35.0% | |
| ATATTCAATGTGGTCTATGG+CGG | + | chr8_2:12916042-12916061 | Msa1235140:intron | 35.0% | |
| !!! | GCTGTCATTTTAGATTATGG+CGG | + | chr8_2:12916111-12916130 | Msa1235140:intron | 35.0% |
| !!! | GCTGTCATTTTAGATTATGG+CGG | + | chr8_2:12916111-12916130 | Msa1235140:intron | 35.0% |
| ACGAACAGATTTGGGAATAT+TGG | - | chr8_2:12916337-12916356 | None:intergenic | 35.0% | |
| AAGCTCATAGATGGTTTATC+TGG | + | chr8_2:12916359-12916378 | Msa1235140:intron | 35.0% | |
| CAATGAAAGTTTAGGTGTGT+TGG | + | chr8_2:12916484-12916503 | Msa1235140:intron | 35.0% | |
| ! | TGTTAGATCTTGCTATCACA+AGG | - | chr8_2:12916967-12916986 | None:intergenic | 35.0% |
| GATAGCAAGATCTAACAACT+TGG | + | chr8_2:12916970-12916989 | Msa1235140:intron | 35.0% | |
| ! | AACTTGGAAGTCTCTTTTGT+TGG | + | chr8_2:12916986-12917005 | Msa1235140:intron | 35.0% |
| ! | ACTTGGAAGTCTCTTTTGTT+GGG | + | chr8_2:12916987-12917006 | Msa1235140:intron | 35.0% |
| !! | CAATTTTGAAGAAGCGGATA+AGG | - | chr8_2:12917073-12917092 | None:intergenic | 35.0% |
| ! | TCCACATAGTTCTTAACTTG+TGG | + | chr8_2:12917144-12917163 | Msa1235140:intron | 35.0% |
| TCCACAAGTTAAGAACTATG+TGG | - | chr8_2:12917148-12917167 | None:intergenic | 35.0% | |
| AACAAGTTCATAACTTGGGA+AGG | - | chr8_2:12917183-12917202 | None:intergenic | 35.0% | |
| TATAATAAGTATCCCGAACG+TGG | - | chr8_2:12917292-12917311 | None:intergenic | 35.0% | |
| ACAAAGCGAAATAGAAACCA+TGG | - | chr8_2:12917338-12917357 | None:intergenic | 35.0% | |
| ! | GTATTTGAGCAAGTGCTATT+TGG | + | chr8_2:12917706-12917725 | Msa1235140:intron | 35.0% |
| !!! | CTTTTTTCAAGAAAGCAGTG+TGG | - | chr8_2:12917758-12917777 | None:intergenic | 35.0% |
| !!! | TGGTCTAATTGTTTTTCAGG+TGG | + | chr8_2:12917842-12917861 | Msa1235140:intron | 35.0% |
| !!! | TTGTTTTTCAGGTGGATTTG+GGG | + | chr8_2:12917850-12917869 | Msa1235140:intron | 35.0% |
| TTCTTTGTTGACATTCCTTG+GGG | + | chr8_2:12918040-12918059 | Msa1235140:three_prime_UTR | 35.0% | |
| TGTCAAGATTGAAGACAAGC+GGG | - | chr8_2:12914038-12914057 | None:intergenic | 40.0% | |
| TGTTGGTATGGTGAGAAATG+TGG | - | chr8_2:12914184-12914203 | None:intergenic | 40.0% | |
| GAATTATACTTGGGAGTCTC+TGG | - | chr8_2:12914248-12914267 | None:intergenic | 40.0% | |
| TAAGAAATGGGAACCCTCTA+AGG | + | chr8_2:12914397-12914416 | Msa1235140:CDS | 40.0% | |
| TAGGGTTCTTATTCGTCTTG+AGG | + | chr8_2:12914533-12914552 | Msa1235140:CDS | 40.0% | |
| TCAAACTGTAGGCTGAATGT+TGG | + | chr8_2:12914800-12914819 | Msa1235140:intron | 40.0% | |
| TGACACGGTACAACATCAAA+CGG | - | chr8_2:12914861-12914880 | None:intergenic | 40.0% | |
| ACTAAGCTGTATCACATTGG+TGG | + | chr8_2:12914921-12914940 | Msa1235140:intron | 40.0% | |
| CAAGCTGATGACATTCAATG+AGG | - | chr8_2:12914973-12914992 | None:intergenic | 40.0% | |
| CTCATTGAATGTCATCAGCT+TGG | + | chr8_2:12914971-12914990 | Msa1235140:intron | 40.0% | |
| !! | TAGTGTTAACTTGTGCCCTT+AGG | + | chr8_2:12915184-12915203 | Msa1235140:intron | 40.0% |
| !! | AGTGTTAACTTGTGCCCTTA+GGG | + | chr8_2:12915185-12915204 | Msa1235140:intron | 40.0% |
| GCTTCTAAACTTGTGCCTTA+AGG | + | chr8_2:12915324-12915343 | Msa1235140:intron | 40.0% | |
| !!! | TTTTTTGGGCAGAAAACTGC+TGG | + | chr8_2:12915528-12915547 | Msa1235140:intron | 40.0% |
| GGACCTGAGACAAATACAAA+AGG | - | chr8_2:12915677-12915696 | None:intergenic | 40.0% | |
| TTGTCTCAGGTCCTAAATGT+TGG | + | chr8_2:12915684-12915703 | Msa1235140:intron | 40.0% | |
| GAGGCTGAAAATGTAAAAGC+TGG | + | chr8_2:12915711-12915730 | Msa1235140:CDS | 40.0% | |
| !! | AAATGTAAAAGCTGGCTCGA+AGG | + | chr8_2:12915719-12915738 | Msa1235140:CDS | 40.0% |
| TGAAAGAGGTGGAGTAGAAA+CGG | + | chr8_2:12915760-12915779 | Msa1235140:intron | 40.0% | |
| CTTGTTTGTACCTTGGGATT+AGG | - | chr8_2:12915937-12915956 | None:intergenic | 40.0% | |
| AAACAAGTAACCATGAACCC+TGG | + | chr8_2:12915950-12915969 | Msa1235140:intron | 40.0% | |
| CCGATATTCAATGTGGTCTA+TGG | + | chr8_2:12916039-12916058 | Msa1235140:intron | 40.0% | |
| !!! | GGCGCTGTCATTTTAGATTA+TGG | + | chr8_2:12916108-12916127 | Msa1235140:intron | 40.0% |
| CTGCCATATCTGCTGAAATT+GGG | + | chr8_2:12916140-12916159 | Msa1235140:intron | 40.0% | |
| ATGCCCAATTTCAGCAGATA+TGG | - | chr8_2:12916146-12916165 | None:intergenic | 40.0% | |
| ATATCTGCTGAAATTGGGCA+TGG | + | chr8_2:12916145-12916164 | Msa1235140:intron | 40.0% | |
| !!! | GGCGCTGTCATTTTAGATTA+TGG | + | chr8_2:12916108-12916127 | Msa1235140:intron | 40.0% |
| CTGCCATATCTGCTGAAATT+GGG | + | chr8_2:12916140-12916159 | Msa1235140:intron | 40.0% | |
| ATGCCCAATTTCAGCAGATA+TGG | - | chr8_2:12916146-12916165 | None:intergenic | 40.0% | |
| ATATCTGCTGAAATTGGGCA+TGG | + | chr8_2:12916145-12916164 | Msa1235140:intron | 40.0% | |
| TTGTCAAATATCAGCCATGG+CGG | - | chr8_2:12916296-12916315 | None:intergenic | 40.0% | |
| GTGTTGTCAAATATCAGCCA+TGG | - | chr8_2:12916299-12916318 | None:intergenic | 40.0% | |
| GAGCTTCAACGAACAGATTT+GGG | - | chr8_2:12916345-12916364 | None:intergenic | 40.0% | |
| TGAGCTTCAACGAACAGATT+TGG | - | chr8_2:12916346-12916365 | None:intergenic | 40.0% | |
| TGTTCGTTGAAGCTCATAGA+TGG | + | chr8_2:12916350-12916369 | Msa1235140:intron | 40.0% | |
| TGTCCAAGGTTTAAGTCCAA+AGG | - | chr8_2:12916406-12916425 | None:intergenic | 40.0% | |
| TAAACCTTGGACAATACCAC+TGG | + | chr8_2:12916413-12916432 | Msa1235140:intron | 40.0% | |
| AAACCTTGGACAATACCACT+GGG | + | chr8_2:12916414-12916433 | Msa1235140:intron | 40.0% | |
| TTGACTCTAATCAGCCCAAA+AGG | - | chr8_2:12916443-12916462 | None:intergenic | 40.0% | |
| ! | CTTGGAAGTCTCTTTTGTTG+GGG | + | chr8_2:12916988-12917007 | Msa1235140:intron | 40.0% |
| ACACAAATTCGTCTGCTGAA+GGG | - | chr8_2:12917216-12917235 | None:intergenic | 40.0% | |
| TCACATATTTGCATGCCATG+CGG | + | chr8_2:12917400-12917419 | Msa1235140:intron | 40.0% | |
| CACCGACATAAATGCTTATG+AGG | + | chr8_2:12917574-12917593 | Msa1235140:CDS | 40.0% | |
| TTTCAAGAAAGCAGTGTGGT+TGG | - | chr8_2:12917754-12917773 | None:intergenic | 40.0% | |
| AGGTATCATTGCGTCACTAA+AGG | - | chr8_2:12918193-12918212 | None:intergenic | 40.0% | |
| AGTGACGCAATGATACCTTT+AGG | + | chr8_2:12918195-12918214 | Msa1235140:three_prime_UTR | 40.0% | |
| AAGGAAGGGAGTTGTTGGTA+TGG | - | chr8_2:12914196-12914215 | None:intergenic | 45.0% | |
| TTGTGAAGGAAGGGAGTTGT+TGG | - | chr8_2:12914201-12914220 | None:intergenic | 45.0% | |
| ! | GTGGGGTTTTTGTGAAGGAA+GGG | - | chr8_2:12914210-12914229 | None:intergenic | 45.0% |
| TCTCTGGTTGGAGAAAGAAG+CGG | - | chr8_2:12914232-12914251 | None:intergenic | 45.0% | |
| TATACTTGGGAGTCTCTGGT+TGG | - | chr8_2:12914244-12914263 | None:intergenic | 45.0% | |
| ATAAGAACCCTATCAGCCTG+AGG | - | chr8_2:12914525-12914544 | None:intergenic | 45.0% | |
| AGACTGCAGACACCAAACAT+TGG | - | chr8_2:12914758-12914777 | None:intergenic | 45.0% | |
| ACCATGAACCCTGGAGTTAT+TGG | + | chr8_2:12915959-12915978 | Msa1235140:intron | 45.0% | |
| ACCAATAACTCCAGGGTTCA+TGG | - | chr8_2:12915963-12915982 | None:intergenic | 45.0% | |
| CCAATTTCAGCAGATATGGC+AGG | - | chr8_2:12916142-12916161 | None:intergenic | 45.0% | |
| CCTGCCATATCTGCTGAAAT+TGG | + | chr8_2:12916139-12916158 | Msa1235140:intron | 45.0% | |
| CCAATTTCAGCAGATATGGC+AGG | - | chr8_2:12916142-12916161 | None:intergenic | 45.0% | |
| CCTGCCATATCTGCTGAAAT+TGG | + | chr8_2:12916139-12916158 | Msa1235140:intron | 45.0% | |
| !! | ATATCAGCCATGGCGGATAT+CGG | - | chr8_2:12916289-12916308 | None:intergenic | 45.0% |
| CAAAGGCCTTCTGTTTGAGA+GGG | - | chr8_2:12916389-12916408 | None:intergenic | 45.0% | |
| AGGCCTTTGGACTTAAACCT+TGG | + | chr8_2:12916400-12916419 | Msa1235140:intron | 45.0% | |
| ACTCTAATCAGCCCAAAAGG+TGG | - | chr8_2:12916440-12916459 | None:intergenic | 45.0% | |
| TACACGTTCGTTGAGCCTTA+AGG | - | chr8_2:12916540-12916559 | None:intergenic | 45.0% | |
| CTGTGTGTTATGAGCTGCTT+AGG | - | chr8_2:12916689-12916708 | None:intergenic | 45.0% | |
| ! | AAGTCTCTTTTGTTGGGGTG+AGG | + | chr8_2:12916993-12917012 | Msa1235140:intron | 45.0% |
| TTGTTGGGGTGAGGATTCAT+TGG | + | chr8_2:12917002-12917021 | Msa1235140:intron | 45.0% | |
| GACACAAATTCGTCTGCTGA+AGG | - | chr8_2:12917217-12917236 | None:intergenic | 45.0% | |
| CACATATTTGCATGCCATGC+GGG | + | chr8_2:12917401-12917420 | Msa1235140:intron | 45.0% | |
| CTGCTCTTTGTCTCACAAAG+CGG | - | chr8_2:12917940-12917959 | None:intergenic | 45.0% | |
| GCAGAATCAAAAACTCCCCA+AGG | - | chr8_2:12918058-12918077 | None:intergenic | 45.0% | |
| ACGCAATGATACCTTTAGGC+TGG | + | chr8_2:12918199-12918218 | Msa1235140:three_prime_UTR | 45.0% | |
| TGATACCTTTAGGCTGGAGT+TGG | + | chr8_2:12918205-12918224 | Msa1235140:three_prime_UTR | 45.0% | |
| GATTTCCAACTCCAGCCTAA+AGG | - | chr8_2:12918213-12918232 | None:intergenic | 45.0% | |
| !!! | AAAAAAAAAACTAATTTTTT+TGG | - | chr8_2:12914587-12914606 | None:intergenic | 5.0% |
| !!! | TAGTTTTTTTTTTTTTAATT+TGG | + | chr8_2:12914594-12914613 | Msa1235140:intron | 5.0% |
| !!! | AGTTTTTTTTTTTTTAATTT+GGG | + | chr8_2:12914595-12914614 | Msa1235140:intron | 5.0% |
| !!! | TATGATTATAATTTTAAATA+TGG | - | chr8_2:12917531-12917550 | None:intergenic | 5.0% |
| !! | CATTAATAAATAATAAATAT+TGG | + | chr8_2:12917822-12917841 | Msa1235140:intron | 5.0% |
| ! | GGTGGGGTTTTTGTGAAGGA+AGG | - | chr8_2:12914211-12914230 | None:intergenic | 50.0% |
| ! | AAGCGGTGGGGTTTTTGTGA+AGG | - | chr8_2:12914215-12914234 | None:intergenic | 50.0% |
| TGGTTGGAGAAAGAAGCGGT+GGG | - | chr8_2:12914228-12914247 | None:intergenic | 50.0% | |
| !! | TGTATCACATTGGTGGCGTG+CGG | + | chr8_2:12914928-12914947 | Msa1235140:intron | 50.0% |
| TTTGGGCAGAAAACTGCTGG+TGG | + | chr8_2:12915531-12915550 | Msa1235140:intron | 50.0% | |
| TCTGCTGAAATTGGGCATGG+CGG | + | chr8_2:12916148-12916167 | Msa1235140:intron | 50.0% | |
| ! | GATATCGGTGGGGGGTTTTT+GGG | - | chr8_2:12916274-12916293 | None:intergenic | 50.0% |
| CCAAAGGCCTTCTGTTTGAG+AGG | - | chr8_2:12916390-12916409 | None:intergenic | 50.0% | |
| CCTCTCAAACAGAAGGCCTT+TGG | + | chr8_2:12916387-12916406 | Msa1235140:intron | 50.0% | |
| ! | AATACCACTGGGCCACCTTT+TGG | + | chr8_2:12916425-12916444 | Msa1235140:intron | 50.0% |
| ! | ATACCACTGGGCCACCTTTT+GGG | + | chr8_2:12916426-12916445 | Msa1235140:intron | 50.0% |
| AGTTTAGGTGTGTTGGGCTC+CGG | + | chr8_2:12916491-12916510 | Msa1235140:intron | 50.0% | |
| GGCTCAACGAACGTGTACAA+AGG | + | chr8_2:12916543-12916562 | Msa1235140:intron | 50.0% | |
| TGACCAAAGAGTCCTCACAC+TGG | + | chr8_2:12916580-12916599 | Msa1235140:intron | 50.0% | |
| GACCAAAGAGTCCTCACACT+GGG | + | chr8_2:12916581-12916600 | Msa1235140:intron | 50.0% | |
| TTGTTGGCCGTCGTTGAGTA+GGG | + | chr8_2:12917909-12917928 | Msa1235140:CDS | 50.0% | |
| GGTTGGAGAAAGAAGCGGTG+GGG | - | chr8_2:12914227-12914246 | None:intergenic | 55.0% | |
| CTGGTTGGAGAAAGAAGCGG+TGG | - | chr8_2:12914229-12914248 | None:intergenic | 55.0% | |
| TGGATTGCAGGTTGTGCCTC+AGG | + | chr8_2:12914506-12914525 | Msa1235140:intron | 55.0% | |
| AGGTTGTGCCTCAGGCTGAT+AGG | + | chr8_2:12914514-12914533 | Msa1235140:intron | 55.0% | |
| GGTTGTGCCTCAGGCTGATA+GGG | + | chr8_2:12914515-12914534 | Msa1235140:intron | 55.0% | |
| !! | GGTCCTAAATGTTGGTGCCG+AGG | + | chr8_2:12915692-12915711 | Msa1235140:intron | 55.0% |
| CAGCCTCGGCACCAACATTT+AGG | - | chr8_2:12915698-12915717 | None:intergenic | 55.0% | |
| ATGTGGTCTATGGCGGTCCA+TGG | + | chr8_2:12916049-12916068 | Msa1235140:intron | 55.0% | |
| ACAAAGCGACCGGTATGGCA+GGG | - | chr8_2:12916088-12916107 | None:intergenic | 55.0% | |
| ACAAAGCGACCGGTATGGCA+GGG | - | chr8_2:12916088-12916107 | None:intergenic | 55.0% | |
| ! | GGATATCGGTGGGGGGTTTT+TGG | - | chr8_2:12916275-12916294 | None:intergenic | 55.0% |
| GGCATGCCCTCTCAAACAGA+AGG | + | chr8_2:12916380-12916399 | Msa1235140:intron | 55.0% | |
| TGGCCCAGTGGTATTGTCCA+AGG | - | chr8_2:12916420-12916439 | None:intergenic | 55.0% | |
| CTCCCAGTGTGAGGACTCTT+TGG | - | chr8_2:12916586-12916605 | None:intergenic | 55.0% | |
| AAGAGTCCTCACACTGGGAG+CGG | + | chr8_2:12916586-12916605 | Msa1235140:intron | 55.0% | |
| TATATCCCGCTCCCAGTGTG+AGG | - | chr8_2:12916595-12916614 | None:intergenic | 55.0% | |
| TTTGCATGCCATGCGGGTAG+TGG | + | chr8_2:12917407-12917426 | Msa1235140:intron | 55.0% | |
| CTTGTTGGCCGTCGTTGAGT+AGG | + | chr8_2:12917908-12917927 | Msa1235140:CDS | 55.0% | |
| GGCCAAACCCTACTCAACGA+CGG | - | chr8_2:12917919-12917938 | None:intergenic | 55.0% | |
| ! | AGGGTCTTGGCTCTCAGCCA+TGG | - | chr8_2:12916069-12916088 | None:intergenic | 60.0% |
| GAGCCAAGACCCTGCCATAC+CGG | + | chr8_2:12916076-12916095 | Msa1235140:intron | 60.0% | |
| CACAAAGCGACCGGTATGGC+AGG | - | chr8_2:12916089-12916108 | None:intergenic | 60.0% | |
| ! | CTGCCATACCGGTCGCTTTG+TGG | + | chr8_2:12916087-12916106 | Msa1235140:intron | 60.0% |
| TGACAGCGCCACAAAGCGAC+CGG | - | chr8_2:12916098-12916117 | None:intergenic | 60.0% | |
| GAGCCAAGACCCTGCCATAC+CGG | + | chr8_2:12916076-12916095 | Msa1235140:intron | 60.0% | |
| CACAAAGCGACCGGTATGGC+AGG | - | chr8_2:12916089-12916108 | None:intergenic | 60.0% | |
| ! | CTGCCATACCGGTCGCTTTG+TGG | + | chr8_2:12916087-12916106 | Msa1235140:intron | 60.0% |
| TGACAGCGCCACAAAGCGAC+CGG | - | chr8_2:12916098-12916117 | None:intergenic | 60.0% | |
| !! | AGCCATGGCGGATATCGGTG+GGG | - | chr8_2:12916284-12916303 | None:intergenic | 60.0% |
| !! | CAGCCATGGCGGATATCGGT+GGG | - | chr8_2:12916285-12916304 | None:intergenic | 60.0% |
| !! | TCAGCCATGGCGGATATCGG+TGG | - | chr8_2:12916286-12916305 | None:intergenic | 60.0% |
| TTAGGTGTGTTGGGCTCCGG+AGG | + | chr8_2:12916494-12916513 | Msa1235140:intron | 60.0% | |
| CTTAAGGCCTGCCTTGACCC+TGG | - | chr8_2:12916524-12916543 | None:intergenic | 60.0% | |
| CAGGGTCAAGGCAGGCCTTA+AGG | + | chr8_2:12916522-12916541 | Msa1235140:intron | 60.0% | |
| AGAGTCCTCACACTGGGAGC+GGG | + | chr8_2:12916587-12916606 | Msa1235140:intron | 60.0% | |
| ! | CATGCGGGTAGTGGTGTGCA+GGG | + | chr8_2:12917416-12917435 | Msa1235140:intron | 60.0% |
| ! | ATGCGGGTAGTGGTGTGCAG+GGG | + | chr8_2:12917417-12917436 | Msa1235140:intron | 60.0% |
| GGCCGTCGTTGAGTAGGGTT+TGG | + | chr8_2:12917914-12917933 | Msa1235140:exon | 60.0% | |
| CGACCGGTATGGCAGGGTCT+TGG | - | chr8_2:12916082-12916101 | None:intergenic | 65.0% | |
| GCGCCACAAAGCGACCGGTA+TGG | - | chr8_2:12916093-12916112 | None:intergenic | 65.0% | |
| CGACCGGTATGGCAGGGTCT+TGG | - | chr8_2:12916082-12916101 | None:intergenic | 65.0% | |
| GCGCCACAAAGCGACCGGTA+TGG | - | chr8_2:12916093-12916112 | None:intergenic | 65.0% | |
| !! | CCATGGCGGATATCGGTGGG+GGG | - | chr8_2:12916282-12916301 | None:intergenic | 65.0% |
| !! | GCCATGGCGGATATCGGTGG+GGG | - | chr8_2:12916283-12916302 | None:intergenic | 65.0% |
| CAGCCCAAAAGGTGGCCCAG+TGG | - | chr8_2:12916432-12916451 | None:intergenic | 65.0% | |
| CCTTGACCCTGGTGAGCCTC+CGG | - | chr8_2:12916513-12916532 | None:intergenic | 65.0% | |
| AGGCTCACCAGGGTCAAGGC+AGG | + | chr8_2:12916514-12916533 | Msa1235140:intron | 65.0% | |
| CCTGCACACCACTACCCGCA+TGG | - | chr8_2:12917418-12917437 | None:intergenic | 65.0% | |
| ! | CCATGCGGGTAGTGGTGTGC+AGG | + | chr8_2:12917415-12917434 | Msa1235140:intron | 65.0% |
| CCCCCCACCGATATCCGCCA+TGG | + | chr8_2:12916279-12916298 | Msa1235140:intron | 70.0% | |
| TTGGGCTCCGGAGGCTCACC+AGG | + | chr8_2:12916503-12916522 | Msa1235140:intron | 70.0% | |
| TGGGCTCCGGAGGCTCACCA+GGG | + | chr8_2:12916504-12916523 | Msa1235140:intron | 70.0% | |
| CCGGAGGCTCACCAGGGTCA+AGG | + | chr8_2:12916510-12916529 | Msa1235140:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 12914029 | 12918265 | 12914029 | ID=Msa1235140;Name=Msa1235140 |
| chr8_2 | mRNA | 12914029 | 12918265 | 12914029 | ID=Msa1235140-mRNA-1;Parent=Msa1235140;Name=Msa1235140-mRNA-1;_AED=0.08;_eAED=0.08;_QI=145|1|1|1|1|1|7|336|135 |
| chr8_2 | exon | 12914029 | 12914258 | 12914029 | ID=Msa1235140-mRNA-1:exon:5019;Parent=Msa1235140-mRNA-1 |
| chr8_2 | exon | 12914360 | 12914418 | 12914360 | ID=Msa1235140-mRNA-1:exon:5020;Parent=Msa1235140-mRNA-1 |
| chr8_2 | exon | 12914516 | 12914566 | 12914516 | ID=Msa1235140-mRNA-1:exon:5021;Parent=Msa1235140-mRNA-1 |
| chr8_2 | exon | 12915540 | 12915605 | 12915540 | ID=Msa1235140-mRNA-1:exon:5022;Parent=Msa1235140-mRNA-1 |
| chr8_2 | exon | 12915693 | 12915740 | 12915693 | ID=Msa1235140-mRNA-1:exon:5023;Parent=Msa1235140-mRNA-1 |
| chr8_2 | exon | 12917566 | 12917595 | 12917566 | ID=Msa1235140-mRNA-1:exon:5024;Parent=Msa1235140-mRNA-1 |
| chr8_2 | exon | 12917861 | 12918265 | 12917861 | ID=Msa1235140-mRNA-1:exon:5025;Parent=Msa1235140-mRNA-1 |
| chr8_2 | five_prime_UTR | 12914029 | 12914173 | 12914029 | ID=Msa1235140-mRNA-1:five_prime_utr;Parent=Msa1235140-mRNA-1 |
| chr8_2 | CDS | 12914174 | 12914258 | 12914174 | ID=Msa1235140-mRNA-1:cds;Parent=Msa1235140-mRNA-1 |
| chr8_2 | CDS | 12914360 | 12914418 | 12914360 | ID=Msa1235140-mRNA-1:cds;Parent=Msa1235140-mRNA-1 |
| chr8_2 | CDS | 12914516 | 12914566 | 12914516 | ID=Msa1235140-mRNA-1:cds;Parent=Msa1235140-mRNA-1 |
| chr8_2 | CDS | 12915540 | 12915605 | 12915540 | ID=Msa1235140-mRNA-1:cds;Parent=Msa1235140-mRNA-1 |
| chr8_2 | CDS | 12915693 | 12915740 | 12915693 | ID=Msa1235140-mRNA-1:cds;Parent=Msa1235140-mRNA-1 |
| chr8_2 | CDS | 12917566 | 12917595 | 12917566 | ID=Msa1235140-mRNA-1:cds;Parent=Msa1235140-mRNA-1 |
| chr8_2 | CDS | 12917861 | 12917929 | 12917861 | ID=Msa1235140-mRNA-1:cds;Parent=Msa1235140-mRNA-1 |
| chr8_2 | three_prime_UTR | 12917930 | 12918265 | 12917930 | ID=Msa1235140-mRNA-1:three_prime_utr;Parent=Msa1235140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
