AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0379450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379450 MtrunA17_Chr3g0132451 87.755 294 29 4 1 291 1 290 1.17e-179 496
Msa0379450 MtrunA17_Chr5g0411091 34.759 187 116 2 92 276 98 280 1.05e-26 106
Msa0379450 MtrunA17_Chr4g0058151 33.333 183 107 7 81 257 116 289 9.47e-26 103
Msa0379450 MtrunA17_Chr3g0116631 33.714 175 105 6 91 258 110 280 2.43e-24 99.8
Msa0379450 MtrunA17_Chr1g0168601 37.580 157 85 7 112 262 84 233 1.38e-21 90.9
Msa0379450 MtrunA17_Chr7g0267571 29.442 197 117 7 74 257 98 285 1.16e-20 90.1
Msa0379450 MtrunA17_Chr1g0177101 30.055 183 119 5 82 257 100 280 1.75e-20 89.4
Msa0379450 MtrunA17_Chr3g0087481 30.380 237 136 10 38 257 8 232 8.38e-18 80.5
Msa0379450 MtrunA17_Chr1g0181111 27.823 248 148 7 34 260 35 272 2.23e-17 80.1
Msa0379450 MtrunA17_Chr1g0179701 28.161 174 117 5 90 257 241 412 3.22e-15 75.9
Msa0379450 MtrunA17_Chr1g0179701 27.011 174 123 3 92 265 152 321 1.57e-12 67.8
Msa0379450 MtrunA17_Chr7g0259641 28.108 185 122 5 92 268 587 768 9.67e-15 74.3
Msa0379450 MtrunA17_Chr7g0265341 26.230 183 123 5 90 262 249 429 2.04e-14 73.6
Msa0379450 MtrunA17_Chr6g0466451 29.648 199 123 8 78 262 91 286 3.00e-14 72.8
Msa0379450 MtrunA17_Chr6g0465631 29.648 199 123 8 78 262 91 286 3.12e-14 72.8
Msa0379450 MtrunA17_Chr1g0201151 28.804 184 118 5 90 262 209 390 3.20e-13 69.7
Msa0379450 MtrunA17_Chr5g0447761 26.380 163 108 5 89 242 5 164 3.95e-12 66.2
Msa0379450 MtrunA17_Chr4g0068631 29.193 161 102 7 91 247 89 241 1.35e-11 65.1
Msa0379450 MtrunA17_Chr7g0219021 34.444 90 55 2 87 175 37 123 1.61e-11 63.2
Msa0379450 MtrunA17_Chr2g0290191 25.153 163 108 5 91 242 5 164 1.69e-11 64.3
Msa0379450 MtrunA17_Chr6g0465751 27.174 184 121 5 90 262 200 381 1.85e-11 64.3
Msa0379450 MtrunA17_Chr1g0153181 27.869 183 111 4 95 262 216 392 1.98e-11 64.3
Msa0379450 MtrunA17_Chr0c09g0493511 29.189 185 116 7 90 262 118 299 2.83e-11 63.9
Msa0379450 MtrunA17_Chr6g0465691 27.717 184 120 5 90 262 118 299 3.07e-11 63.5
Msa0379450 MtrunA17_Chr6g0466501 27.717 184 120 5 90 262 200 381 3.28e-11 63.5
Msa0379450 MtrunA17_Chr6g0481071 36.585 82 51 1 90 170 95 176 6.61e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379450 AT4G09040.1 63.043 184 66 2 85 266 89 272 1.42e-78 241
Msa0379450 AT4G09040.2 62.983 181 65 2 88 266 32 212 6.46e-78 237
Msa0379450 AT2G35410.1 37.113 194 112 2 72 255 73 266 1.20e-37 135
Msa0379450 AT1G60000.1 33.702 181 106 6 90 263 85 258 2.46e-23 96.7
Msa0379450 AT3G52380.1 32.105 190 113 7 79 257 108 292 5.58e-23 97.1
Msa0379450 AT5G50250.1 32.948 173 104 6 91 257 114 280 8.73e-23 95.9
Msa0379450 AT4G24770.1 32.184 174 106 6 90 257 150 317 3.88e-22 94.7
Msa0379450 AT4G24770.2 32.184 174 106 6 90 257 150 317 3.88e-22 94.7
Msa0379450 AT2G37220.1 31.053 190 106 5 91 258 92 278 1.25e-18 84.3
Msa0379450 AT3G16380.1 30.055 183 117 4 89 262 201 381 2.08e-15 76.6
Msa0379450 AT4G34110.1 29.508 183 117 4 90 262 215 395 3.84e-15 75.9
Msa0379450 AT2G36660.1 27.322 183 121 5 90 262 201 381 1.22e-14 74.3
Msa0379450 AT2G36660.1 26.901 171 119 4 92 262 114 278 1.77e-11 65.1
Msa0379450 AT3G52150.2 30.114 176 112 5 91 257 77 250 6.77e-13 67.4
Msa0379450 AT3G52150.1 30.114 176 112 5 91 257 77 250 6.77e-13 67.4
Msa0379450 AT1G01080.1 26.601 203 128 5 70 257 88 284 1.27e-12 67.4
Msa0379450 AT1G01080.2 26.471 204 128 5 70 257 88 285 1.50e-12 67.0
Msa0379450 AT2G23350.1 27.041 196 123 4 81 262 216 405 2.57e-12 67.4
Msa0379450 AT1G71770.1 28.108 185 121 4 88 262 237 419 4.76e-12 66.6
Msa0379450 AT1G71770.2 28.108 185 121 4 88 262 237 419 4.76e-12 66.6
Msa0379450 AT1G22760.1 28.866 194 122 7 81 262 220 409 1.74e-11 65.1
Msa0379450 AT1G01080.3 26.425 193 121 5 70 247 88 274 2.08e-11 63.5
Msa0379450 AT5G41690.1 28.507 221 123 8 57 249 33 246 5.23e-11 63.5
Msa0379450 AT5G41690.3 28.507 221 123 8 57 249 33 246 5.23e-11 63.5
Msa0379450 AT5G41690.2 28.507 221 123 8 57 249 33 246 5.23e-11 63.5
Msa0379450 AT4G19610.1 30.814 172 108 7 92 255 604 772 6.74e-11 63.2

Find 91 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTTATCTGTACTATA+TGG 0.167846 3_1:-80591966 Msa0379450:three_prime_UTR
ACAAACAAGTTATATGTTAT+TGG 0.178438 3_1:+80592793 None:intergenic
GATATGTTTATTGCTTTCTT+AGG 0.229758 3_1:+80592059 None:intergenic
GTTGTTTGGTTGTGATAATA+AGG 0.277919 3_1:+80593992 None:intergenic
GGGTTTAGCGTTTGTGGAAA+TGG 0.293091 3_1:-80593651 Msa0379450:CDS
CAAATATGCTAAGCCTAAAA+AGG 0.298308 3_1:-80592845 Msa0379450:CDS
TTTGTTCCTCGGTGGTTACT+TGG 0.304393 3_1:+80593926 None:intergenic
CTTCTTTATCTGTACTATAT+GGG 0.324672 3_1:-80591965 Msa0379450:three_prime_UTR
ATGGATAAACGAAGAGAATA+AGG 0.330328 3_1:+80594036 None:intergenic
TGTATAATAAGAACAGAAAC+AGG 0.337196 3_1:-80593673 Msa0379450:CDS
AGTTTCAGAGCATCTCAGTT+TGG 0.363763 3_1:+80594177 None:intergenic
AGAGCTGCAGAAGCTTCTTC+AGG 0.366986 3_1:+80593623 None:intergenic
GTTTCAGAGCATCTCAGTTT+GGG 0.376742 3_1:+80594178 None:intergenic
CTTCTCAATTGCTATGCTAT+GGG 0.384509 3_1:+80594212 None:intergenic
AGCTTCTTTCTTAGACTTGA+AGG 0.386679 3_1:+80592639 None:intergenic
CCTAGACGGCCATCTGGTTA+TGG 0.388895 3_1:-80592670 Msa0379450:CDS
TAGTAAGCGGTTTGTTCAAC+TGG 0.391185 3_1:-80592399 Msa0379450:CDS
CAAACATTTCTTATGAAGTA+AGG 0.396454 3_1:-80592768 Msa0379450:CDS
TTAAGAATAGGAGAAATCTT+AGG 0.397687 3_1:-80591939 Msa0379450:three_prime_UTR
TCTTCTCAATTGCTATGCTA+TGG 0.409991 3_1:+80594211 None:intergenic
AAACAGGGGTTTAGCGTTTG+TGG 0.413290 3_1:-80593657 Msa0379450:CDS
TTCTTTATCTGTACTATATG+GGG 0.415298 3_1:-80591964 Msa0379450:three_prime_UTR
GGTTTAGCGTTTGTGGAAAT+GGG 0.418798 3_1:-80593650 Msa0379450:CDS
AGTTGAACAAACCGCTTACT+AGG 0.422121 3_1:+80592401 None:intergenic
GTTAATGAATTAATTTCAAA+TGG 0.424870 3_1:-80592099 Msa0379450:three_prime_UTR
CCATAACCAGATGGCCGTCT+AGG 0.428089 3_1:+80592670 None:intergenic
GAAGCTCTTGCCGAGTTTGA+AGG 0.428323 3_1:-80592613 Msa0379450:CDS
TTACTAGGTGCCACCCTTAG+TGG 0.434877 3_1:+80592416 None:intergenic
TAAAGAAGAAATTATCAGAT+AGG 0.436196 3_1:+80591980 None:intergenic
GGGATGAAACCAAATGGATA+AGG 0.438798 3_1:+80594233 None:intergenic
ATTGGCTTCCGTTCCACTGA+TGG 0.442268 3_1:+80592811 None:intergenic
GGATGAAACCAAATGGATAA+GGG 0.442790 3_1:+80594234 None:intergenic
GAACTCTTCGGTTTGTTCCT+CGG 0.445669 3_1:+80593915 None:intergenic
CTGAGATGCTCTGAAACTAA+TGG 0.445996 3_1:-80594172 Msa0379450:exon
GGTGGTTACTTGGGTTTGTT+CGG 0.446564 3_1:+80593936 None:intergenic
ACGAAGAGAATAAGGATTGA+GGG 0.446924 3_1:+80594044 None:intergenic
TTGGTTGTGATAATAAGGGC+TGG 0.452679 3_1:+80593997 None:intergenic
AGTAGAATGAGAGAGTTGTT+TGG 0.462029 3_1:+80593978 None:intergenic
TGGTTGTGATAATAAGGGCT+GGG 0.463306 3_1:+80593998 None:intergenic
AATGCTGCGTAGGAGTTTGA+CGG 0.476117 3_1:-80592883 Msa0379450:intron
TTAATTTCAAATGGTTAGCA+AGG 0.497175 3_1:-80592090 Msa0379450:three_prime_UTR
AACGAAGAGAATAAGGATTG+AGG 0.498160 3_1:+80594043 None:intergenic
GAGAACCCTAGACGGCCATC+TGG 0.499676 3_1:-80592676 Msa0379450:CDS
TTGTTTGGTTGTGATAATAA+GGG 0.499915 3_1:+80593993 None:intergenic
CAACTGGCGGAGGAGAGTGC+AGG 0.500053 3_1:-80592383 Msa0379450:CDS
TGGAAAAGTCCTTGATGTTG+AGG 0.503374 3_1:-80593815 Msa0379450:intron
CTTGTCAAAGTCGAAAGAGT+TGG 0.505319 3_1:+80594080 None:intergenic
TTGTTCCTCGGTGGTTACTT+GGG 0.517713 3_1:+80593927 None:intergenic
CATAACCAGATGGCCGTCTA+GGG 0.521702 3_1:+80592671 None:intergenic
AAGAGTTGGTTATTATTACA+TGG 0.525296 3_1:+80594094 None:intergenic
GCTATGGGGATGAAACCAAA+TGG 0.525399 3_1:+80594227 None:intergenic
TTTGTGGAAGATAATTGAGT+TGG 0.527851 3_1:+80594120 None:intergenic
TTGGGTTTGTTCGGAAGTAG+AGG 0.540338 3_1:+80593945 None:intergenic
TCTTTATCTGTACTATATGG+GGG 0.540822 3_1:-80591963 Msa0379450:three_prime_UTR
TTTGTTTCTTTGTGAACTTG+AGG 0.542341 3_1:-80592192 Msa0379450:three_prime_UTR
CGGGCTTACATACATACGAT+TGG 0.544479 3_1:+80593591 None:intergenic
TACAACACAAACAATATACA+TGG 0.550382 3_1:+80591909 None:intergenic
TCTTGCCGAGTTTGAAGGAA+AGG 0.556428 3_1:-80592608 Msa0379450:intron
TGGTAAAGTTGTTTCTGCAG+AGG 0.561558 3_1:-80592710 Msa0379450:CDS
GGTTGTGATAATAAGGGCTG+GGG 0.563236 3_1:+80593999 None:intergenic
CCGAAGAGTTCTCTACTACC+AGG 0.563866 3_1:-80593903 Msa0379450:CDS
AAACATATCAATATTAGTGA+TGG 0.566258 3_1:-80592045 Msa0379450:three_prime_UTR
AGTTACCTTTCCTTCAAACT+CGG 0.570688 3_1:+80592603 None:intergenic
GCGGTTTGTTCAACTGGCGG+AGG 0.574915 3_1:-80592393 Msa0379450:CDS
GGAGAAAATACGGCCATCAG+TGG 0.578295 3_1:-80592824 Msa0379450:CDS
TTCTCAATTGCTATGCTATG+GGG 0.584651 3_1:+80594213 None:intergenic
CCTGGTAGTAGAGAACTCTT+CGG 0.586085 3_1:+80593903 None:intergenic
AGTAAGGTCTAAAGACCTCA+AGG 0.590952 3_1:-80592752 Msa0379450:CDS
TATGGGAAGGCCACTAAGGG+TGG 0.592174 3_1:-80592426 Msa0379450:CDS
AACATTCTGAGCAAGTAACC+TGG 0.593923 3_1:+80593885 None:intergenic
CATATTTGATATTTATTACG+CGG 0.594638 3_1:+80592860 None:intergenic
AACTGGCGGAGGAGAGTGCA+GGG 0.612225 3_1:-80592382 Msa0379450:CDS
TACTTGCTCAGAATGTTCCA+TGG 0.612581 3_1:-80593879 Msa0379450:CDS
CTCTTCGGTTTGTTCCTCGG+TGG 0.623297 3_1:+80593918 None:intergenic
CAAAGAACGAATATCTTCAG+TGG 0.626913 3_1:+80593849 None:intergenic
TAAGCGGTTTGTTCAACTGG+CGG 0.631391 3_1:-80592396 Msa0379450:CDS
GAAACCAAATGGATAAGGGG+TGG 0.639598 3_1:+80594238 None:intergenic
AAATACGGCCATCAGTGGAA+CGG 0.640291 3_1:-80592819 Msa0379450:CDS
TTCTGAGTTGAGCGTCAATG+AGG 0.642846 3_1:-80592345 Msa0379450:CDS
TGGGGTATGAGTATGAGTAA+TGG 0.648687 3_1:+80594017 None:intergenic
TCTTCAGTGGTACTTGACCA+TGG 0.649901 3_1:+80593862 None:intergenic
GACACAAATCCATAACCAGA+TGG 0.653420 3_1:+80592661 None:intergenic
TCTTTCATGAGAACCCTAGA+CGG 0.656239 3_1:-80592684 Msa0379450:CDS
TATAATAAGAACAGAAACAG+GGG 0.661478 3_1:-80593671 Msa0379450:CDS
GATGAAACCAAATGGATAAG+GGG 0.663873 3_1:+80594235 None:intergenic
GTATAATAAGAACAGAAACA+GGG 0.680373 3_1:-80593672 Msa0379450:CDS
TAAGGGTGGCACCTAGTAAG+CGG 0.686102 3_1:-80592412 Msa0379450:CDS
GAAGATAATTGAGTTGGACA+TGG 0.691814 3_1:+80594126 None:intergenic
ATAAAATTGATATTCAAACA+CGG 0.727358 3_1:-80594271 None:intergenic
GTTGAAAAGATTATTCTACG+TGG 0.746485 3_1:+80591870 None:intergenic
ACAAACCCAAGTAACCACCG+AGG 0.809424 3_1:-80593932 Msa0379450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTGTTTTTGTTT+TGG - chr3_1:80592401-80592420 Msa0379450:CDS 15.0%
!! GTTAGAAAATAGTTATTATT+AGG - chr3_1:80592915-80592934 Msa0379450:intron 15.0%
!! AATAAAAATCTTTGCATTAT+TGG + chr3_1:80593879-80593898 None:intergenic 15.0%
!!! AATAATGCAAAGATTTTTAT+TGG - chr3_1:80593878-80593897 Msa0379450:CDS 15.0%
!!! TTTAAATAATGTGTTTTTAC+AGG - chr3_1:80593901-80593920 Msa0379450:CDS 15.0%
!! GTTAATGAATTAATTTCAAA+TGG - chr3_1:80594020-80594039 Msa0379450:CDS 15.0%
!!! TCTTTTCAACTAAATTTAAA+TGG - chr3_1:80594262-80594281 Msa0379450:five_prime_UTR 15.0%
!!! TTTTTTGTTTGTTTTTGTTT+TGG - chr3_1:80592401-80592420 Msa0379450:CDS 15.0%
!! GTTAGAAAATAGTTATTATT+AGG - chr3_1:80592915-80592934 Msa0379450:intron 15.0%
!! AATAAAAATCTTTGCATTAT+TGG + chr3_1:80593879-80593898 None:intergenic 15.0%
!!! AATAATGCAAAGATTTTTAT+TGG - chr3_1:80593878-80593897 Msa0379450:CDS 15.0%
!!! TTTAAATAATGTGTTTTTAC+AGG - chr3_1:80593901-80593920 Msa0379450:CDS 15.0%
!! GTTAATGAATTAATTTCAAA+TGG - chr3_1:80594020-80594039 Msa0379450:CDS 15.0%
!!! TCTTTTCAACTAAATTTAAA+TGG - chr3_1:80594262-80594281 Msa0379450:five_prime_UTR 15.0%
!! TATTATGTTCAATTCATTTC+AGG - chr3_1:80592349-80592368 Msa0379450:CDS 20.0%
!! AGTTATTATTAGGTGAAAAT+TGG - chr3_1:80592925-80592944 Msa0379450:intron 20.0%
!! AGATAATTATCTTAGTTACT+TGG + chr3_1:80593004-80593023 None:intergenic 20.0%
!! CATATTTGATATTTATTACG+CGG + chr3_1:80593262-80593281 None:intergenic 20.0%
!! ACAAACAAGTTATATGTTAT+TGG + chr3_1:80593329-80593348 None:intergenic 20.0%
!! CCAAATTCAAATTAACAAAT+TGG + chr3_1:80593556-80593575 None:intergenic 20.0%
!!! CCAATTTGTTAATTTGAATT+TGG - chr3_1:80593553-80593572 Msa0379450:intron 20.0%
!! ATTATTTAGTATTGTGACAT+TGG - chr3_1:80593645-80593664 Msa0379450:CDS 20.0%
!!! ATATTTCTGCAGAATTTTAT+GGG - chr3_1:80593676-80593695 Msa0379450:CDS 20.0%
!!! ATAATATCAATCAGTTTTGT+CGG + chr3_1:80593806-80593825 None:intergenic 20.0%
!! AAACATATCAATATTAGTGA+TGG - chr3_1:80594074-80594093 Msa0379450:CDS 20.0%
!! TAAAGAAGAAATTATCAGAT+AGG + chr3_1:80594142-80594161 None:intergenic 20.0%
!! TATTATGTTCAATTCATTTC+AGG - chr3_1:80592349-80592368 Msa0379450:CDS 20.0%
!! AGTTATTATTAGGTGAAAAT+TGG - chr3_1:80592925-80592944 Msa0379450:intron 20.0%
!! AGATAATTATCTTAGTTACT+TGG + chr3_1:80593004-80593023 None:intergenic 20.0%
!! CATATTTGATATTTATTACG+CGG + chr3_1:80593262-80593281 None:intergenic 20.0%
!! ACAAACAAGTTATATGTTAT+TGG + chr3_1:80593329-80593348 None:intergenic 20.0%
!! CCAAATTCAAATTAACAAAT+TGG + chr3_1:80593556-80593575 None:intergenic 20.0%
!!! CCAATTTGTTAATTTGAATT+TGG - chr3_1:80593553-80593572 Msa0379450:intron 20.0%
!! ATTATTTAGTATTGTGACAT+TGG - chr3_1:80593645-80593664 Msa0379450:CDS 20.0%
!!! ATATTTCTGCAGAATTTTAT+GGG - chr3_1:80593676-80593695 Msa0379450:CDS 20.0%
!!! ATAATATCAATCAGTTTTGT+CGG + chr3_1:80593806-80593825 None:intergenic 20.0%
!! AAACATATCAATATTAGTGA+TGG - chr3_1:80594074-80594093 Msa0379450:CDS 20.0%
!! TAAAGAAGAAATTATCAGAT+AGG + chr3_1:80594142-80594161 None:intergenic 20.0%
!! TATTATTACATGGTGTTTTG+TGG + chr3_1:80592018-80592037 None:intergenic 25.0%
!! AAGAGTTGGTTATTATTACA+TGG + chr3_1:80592028-80592047 None:intergenic 25.0%
! TTGTTTGGTTGTGATAATAA+GGG + chr3_1:80592129-80592148 None:intergenic 25.0%
!! CGTTCTTTGTTTGAAAAATA+TGG - chr3_1:80592284-80592303 Msa0379450:intron 25.0%
! TGTATAATAAGAACAGAAAC+AGG - chr3_1:80592446-80592465 Msa0379450:intron 25.0%
! GTATAATAAGAACAGAAACA+GGG - chr3_1:80592447-80592466 Msa0379450:intron 25.0%
! TATAATAAGAACAGAAACAG+GGG - chr3_1:80592448-80592467 Msa0379450:intron 25.0%
! AAGAGGGTGAAATTTAATAT+CGG + chr3_1:80592551-80592570 None:intergenic 25.0%
!! AACGTGTGAATTTTATAGAT+AGG - chr3_1:80592598-80592617 Msa0379450:intron 25.0%
!! ACGTGTGAATTTTATAGATA+GGG - chr3_1:80592599-80592618 Msa0379450:intron 25.0%
!! GTAATTTTCTATGTCAAACT+CGG - chr3_1:80592848-80592867 Msa0379450:CDS 25.0%
!! GATTTGATAGAATTGGTTTA+AGG - chr3_1:80592890-80592909 Msa0379450:intron 25.0%
! GAATATGATACAATTAGAGT+AGG - chr3_1:80592963-80592982 Msa0379450:intron 25.0%
!!! GATTTGTTAGAAATGGTTTA+CGG + chr3_1:80593037-80593056 None:intergenic 25.0%
! TGTTAGATATAGTTACTAGT+TGG + chr3_1:80593061-80593080 None:intergenic 25.0%
! CAGATAAACACATCAAATTA+AGG + chr3_1:80593205-80593224 None:intergenic 25.0%
! CAAACATTTCTTATGAAGTA+AGG - chr3_1:80593351-80593370 Msa0379450:intron 25.0%
!!! AAATTTTAACCGCAATTTCT+TGG - chr3_1:80593606-80593625 Msa0379450:CDS 25.0%
!!! GATATTTCTGCAGAATTTTA+TGG - chr3_1:80593675-80593694 Msa0379450:CDS 25.0%
! TTAATTTCAAATGGTTAGCA+AGG - chr3_1:80594029-80594048 Msa0379450:CDS 25.0%
! GATATGTTTATTGCTTTCTT+AGG + chr3_1:80594063-80594082 None:intergenic 25.0%
! TCTTCTTTATCTGTACTATA+TGG - chr3_1:80594153-80594172 Msa0379450:CDS 25.0%
! CTTCTTTATCTGTACTATAT+GGG - chr3_1:80594154-80594173 Msa0379450:CDS 25.0%
! TTCTTTATCTGTACTATATG+GGG - chr3_1:80594155-80594174 Msa0379450:CDS 25.0%
! TTAAGAATAGGAGAAATCTT+AGG - chr3_1:80594180-80594199 Msa0379450:five_prime_UTR 25.0%
! TACAACACAAACAATATACA+TGG + chr3_1:80594213-80594232 None:intergenic 25.0%
!! TATTATTACATGGTGTTTTG+TGG + chr3_1:80592018-80592037 None:intergenic 25.0%
!! AAGAGTTGGTTATTATTACA+TGG + chr3_1:80592028-80592047 None:intergenic 25.0%
! TTGTTTGGTTGTGATAATAA+GGG + chr3_1:80592129-80592148 None:intergenic 25.0%
!! CGTTCTTTGTTTGAAAAATA+TGG - chr3_1:80592284-80592303 Msa0379450:intron 25.0%
! TGTATAATAAGAACAGAAAC+AGG - chr3_1:80592446-80592465 Msa0379450:intron 25.0%
! GTATAATAAGAACAGAAACA+GGG - chr3_1:80592447-80592466 Msa0379450:intron 25.0%
! TATAATAAGAACAGAAACAG+GGG - chr3_1:80592448-80592467 Msa0379450:intron 25.0%
! AAGAGGGTGAAATTTAATAT+CGG + chr3_1:80592551-80592570 None:intergenic 25.0%
!! AACGTGTGAATTTTATAGAT+AGG - chr3_1:80592598-80592617 Msa0379450:intron 25.0%
!! ACGTGTGAATTTTATAGATA+GGG - chr3_1:80592599-80592618 Msa0379450:intron 25.0%
!! GTAATTTTCTATGTCAAACT+CGG - chr3_1:80592848-80592867 Msa0379450:CDS 25.0%
!! GATTTGATAGAATTGGTTTA+AGG - chr3_1:80592890-80592909 Msa0379450:intron 25.0%
! GAATATGATACAATTAGAGT+AGG - chr3_1:80592963-80592982 Msa0379450:intron 25.0%
!!! GATTTGTTAGAAATGGTTTA+CGG + chr3_1:80593037-80593056 None:intergenic 25.0%
! TGTTAGATATAGTTACTAGT+TGG + chr3_1:80593061-80593080 None:intergenic 25.0%
! CAGATAAACACATCAAATTA+AGG + chr3_1:80593205-80593224 None:intergenic 25.0%
! CAAACATTTCTTATGAAGTA+AGG - chr3_1:80593351-80593370 Msa0379450:intron 25.0%
!!! AAATTTTAACCGCAATTTCT+TGG - chr3_1:80593606-80593625 Msa0379450:CDS 25.0%
!!! GATATTTCTGCAGAATTTTA+TGG - chr3_1:80593675-80593694 Msa0379450:CDS 25.0%
! TTAATTTCAAATGGTTAGCA+AGG - chr3_1:80594029-80594048 Msa0379450:CDS 25.0%
! GATATGTTTATTGCTTTCTT+AGG + chr3_1:80594063-80594082 None:intergenic 25.0%
! TCTTCTTTATCTGTACTATA+TGG - chr3_1:80594153-80594172 Msa0379450:CDS 25.0%
! CTTCTTTATCTGTACTATAT+GGG - chr3_1:80594154-80594173 Msa0379450:CDS 25.0%
! TTCTTTATCTGTACTATATG+GGG - chr3_1:80594155-80594174 Msa0379450:CDS 25.0%
! TTAAGAATAGGAGAAATCTT+AGG - chr3_1:80594180-80594199 Msa0379450:five_prime_UTR 25.0%
! TACAACACAAACAATATACA+TGG + chr3_1:80594213-80594232 None:intergenic 25.0%
TTTGTGGAAGATAATTGAGT+TGG + chr3_1:80592002-80592021 None:intergenic 30.0%
ATGGATAAACGAAGAGAATA+AGG + chr3_1:80592086-80592105 None:intergenic 30.0%
GTTGTTTGGTTGTGATAATA+AGG + chr3_1:80592130-80592149 None:intergenic 30.0%
GATAAAAAACCTCAACATCA+AGG + chr3_1:80592316-80592335 None:intergenic 30.0%
!!! TTGTTTTTGTTTTGGCCTTT+TGG - chr3_1:80592409-80592428 Msa0379450:CDS 30.0%
!!! TGTTTTTGTTTTGGCCTTTT+GGG - chr3_1:80592410-80592429 Msa0379450:CDS 30.0%
ATTGAAAGCTTAAACCCAAA+AGG + chr3_1:80592427-80592446 None:intergenic 30.0%
AGAGGGTGAAATTTAATATC+GGG + chr3_1:80592550-80592569 None:intergenic 30.0%
GCTTTATCAAATCGAAAAGA+GGG + chr3_1:80592567-80592586 None:intergenic 30.0%
! AGCTTTATCAAATCGAAAAG+AGG + chr3_1:80592568-80592587 None:intergenic 30.0%
!! AATCGTTGTTATTTCGCAAT+AGG - chr3_1:80592713-80592732 Msa0379450:CDS 30.0%
ATCAACAATGTTGTAACTTG+CGG + chr3_1:80592818-80592837 None:intergenic 30.0%
ACAGAGAGATTTGATAGAAT+TGG - chr3_1:80592883-80592902 Msa0379450:intron 30.0%
! TTGATAGAATTGGTTTAAGG+TGG - chr3_1:80592893-80592912 Msa0379450:intron 30.0%
CTTAGTTACTTGGATTATGA+AGG + chr3_1:80592994-80593013 None:intergenic 30.0%
!! AGTTGGAGATTTGTTAGAAA+TGG + chr3_1:80593044-80593063 None:intergenic 30.0%
! TGAAATTTTCACACCCATTA+GGG - chr3_1:80593090-80593109 Msa0379450:intron 30.0%
! TTTTTATGTGTCTTCTGTTG+TGG - chr3_1:80593152-80593171 Msa0379450:intron 30.0%
CAAATATGCTAAGCCTAAAA+AGG - chr3_1:80593274-80593293 Msa0379450:intron 30.0%
AGCCTAAAAAGGAGAAAATA+CGG - chr3_1:80593285-80593304 Msa0379450:intron 30.0%
! AATCAAAACGTTTGAAGCAA+GGG + chr3_1:80593841-80593860 None:intergenic 30.0%
! TTTGTTTCTTTGTGAACTTG+AGG - chr3_1:80593927-80593946 Msa0379450:CDS 30.0%
TCTTTATCTGTACTATATGG+GGG - chr3_1:80594156-80594175 Msa0379450:CDS 30.0%
GTTGAAAAGATTATTCTACG+TGG + chr3_1:80594252-80594271 None:intergenic 30.0%
TTTGTGGAAGATAATTGAGT+TGG + chr3_1:80592002-80592021 None:intergenic 30.0%
ATGGATAAACGAAGAGAATA+AGG + chr3_1:80592086-80592105 None:intergenic 30.0%
GTTGTTTGGTTGTGATAATA+AGG + chr3_1:80592130-80592149 None:intergenic 30.0%
GATAAAAAACCTCAACATCA+AGG + chr3_1:80592316-80592335 None:intergenic 30.0%
!!! TTGTTTTTGTTTTGGCCTTT+TGG - chr3_1:80592409-80592428 Msa0379450:CDS 30.0%
!!! TGTTTTTGTTTTGGCCTTTT+GGG - chr3_1:80592410-80592429 Msa0379450:CDS 30.0%
ATTGAAAGCTTAAACCCAAA+AGG + chr3_1:80592427-80592446 None:intergenic 30.0%
AGAGGGTGAAATTTAATATC+GGG + chr3_1:80592550-80592569 None:intergenic 30.0%
GCTTTATCAAATCGAAAAGA+GGG + chr3_1:80592567-80592586 None:intergenic 30.0%
! AGCTTTATCAAATCGAAAAG+AGG + chr3_1:80592568-80592587 None:intergenic 30.0%
!! AATCGTTGTTATTTCGCAAT+AGG - chr3_1:80592713-80592732 Msa0379450:CDS 30.0%
ATCAACAATGTTGTAACTTG+CGG + chr3_1:80592818-80592837 None:intergenic 30.0%
ACAGAGAGATTTGATAGAAT+TGG - chr3_1:80592883-80592902 Msa0379450:intron 30.0%
! TTGATAGAATTGGTTTAAGG+TGG - chr3_1:80592893-80592912 Msa0379450:intron 30.0%
CTTAGTTACTTGGATTATGA+AGG + chr3_1:80592994-80593013 None:intergenic 30.0%
!! AGTTGGAGATTTGTTAGAAA+TGG + chr3_1:80593044-80593063 None:intergenic 30.0%
! TGAAATTTTCACACCCATTA+GGG - chr3_1:80593090-80593109 Msa0379450:intron 30.0%
! TTTTTATGTGTCTTCTGTTG+TGG - chr3_1:80593152-80593171 Msa0379450:intron 30.0%
CAAATATGCTAAGCCTAAAA+AGG - chr3_1:80593274-80593293 Msa0379450:intron 30.0%
AGCCTAAAAAGGAGAAAATA+CGG - chr3_1:80593285-80593304 Msa0379450:intron 30.0%
! AATCAAAACGTTTGAAGCAA+GGG + chr3_1:80593841-80593860 None:intergenic 30.0%
! TTTGTTTCTTTGTGAACTTG+AGG - chr3_1:80593927-80593946 Msa0379450:CDS 30.0%
TCTTTATCTGTACTATATGG+GGG - chr3_1:80594156-80594175 Msa0379450:CDS 30.0%
GTTGAAAAGATTATTCTACG+TGG + chr3_1:80594252-80594271 None:intergenic 30.0%
GATGAAACCAAATGGATAAG+GGG + chr3_1:80591887-80591906 None:intergenic 35.0%
GGATGAAACCAAATGGATAA+GGG + chr3_1:80591888-80591907 None:intergenic 35.0%
TTCTCAATTGCTATGCTATG+GGG + chr3_1:80591909-80591928 None:intergenic 35.0%
CTTCTCAATTGCTATGCTAT+GGG + chr3_1:80591910-80591929 None:intergenic 35.0%
TCTTCTCAATTGCTATGCTA+TGG + chr3_1:80591911-80591930 None:intergenic 35.0%
!! GAAGATAATTGAGTTGGACA+TGG + chr3_1:80591996-80592015 None:intergenic 35.0%
ACGAAGAGAATAAGGATTGA+GGG + chr3_1:80592078-80592097 None:intergenic 35.0%
AACGAAGAGAATAAGGATTG+AGG + chr3_1:80592079-80592098 None:intergenic 35.0%
AGTAGAATGAGAGAGTTGTT+TGG + chr3_1:80592144-80592163 None:intergenic 35.0%
CAAAGAACGAATATCTTCAG+TGG + chr3_1:80592273-80592292 None:intergenic 35.0%
! GCAACTGCTATTTGACAAAA+CGG + chr3_1:80592676-80592695 None:intergenic 35.0%
TATAGCACACTATAGCATAG+CGG - chr3_1:80592777-80592796 Msa0379450:CDS 35.0%
! CTGAAATTTTCACACCCATT+AGG - chr3_1:80593089-80593108 Msa0379450:intron 35.0%
! GAAATTTTCACACCCATTAG+GGG - chr3_1:80593091-80593110 Msa0379450:intron 35.0%
GTGTTATCTTATCCCCTAAT+GGG + chr3_1:80593106-80593125 None:intergenic 35.0%
TGTGTTATCTTATCCCCTAA+TGG + chr3_1:80593107-80593126 None:intergenic 35.0%
CTTCTGTTGTGGAATTTACT+TGG - chr3_1:80593163-80593182 Msa0379450:intron 35.0%
GGAATTTACTTGGCATCTAT+AGG - chr3_1:80593173-80593192 Msa0379450:intron 35.0%
TTTACTTGGCATCTATAGGA+AGG - chr3_1:80593177-80593196 Msa0379450:intron 35.0%
TTACTTGGCATCTATAGGAA+GGG - chr3_1:80593178-80593197 Msa0379450:intron 35.0%
TTATTCTTTGAATGCTGCGT+AGG - chr3_1:80593226-80593245 Msa0379450:intron 35.0%
!!! CCTCAAGGAGTTTTTTGATT+CGG - chr3_1:80593382-80593401 Msa0379450:intron 35.0%
!!! CTCAAGGAGTTTTTTGATTC+GGG - chr3_1:80593383-80593402 Msa0379450:intron 35.0%
AGCTTCTTTCTTAGACTTGA+AGG + chr3_1:80593483-80593502 None:intergenic 35.0%
AGTTACCTTTCCTTCAAACT+CGG + chr3_1:80593519-80593538 None:intergenic 35.0%
! TTCTGCAGAATTTTATGGGA+AGG - chr3_1:80593680-80593699 Msa0379450:CDS 35.0%
! CAATCAAAACGTTTGAAGCA+AGG + chr3_1:80593842-80593861 None:intergenic 35.0%
CTATATGGGGGATTAAGAAT+AGG - chr3_1:80594168-80594187 Msa0379450:exon 35.0%
GATGAAACCAAATGGATAAG+GGG + chr3_1:80591887-80591906 None:intergenic 35.0%
GGATGAAACCAAATGGATAA+GGG + chr3_1:80591888-80591907 None:intergenic 35.0%
TTCTCAATTGCTATGCTATG+GGG + chr3_1:80591909-80591928 None:intergenic 35.0%
CTTCTCAATTGCTATGCTAT+GGG + chr3_1:80591910-80591929 None:intergenic 35.0%
TCTTCTCAATTGCTATGCTA+TGG + chr3_1:80591911-80591930 None:intergenic 35.0%
!! GAAGATAATTGAGTTGGACA+TGG + chr3_1:80591996-80592015 None:intergenic 35.0%
ACGAAGAGAATAAGGATTGA+GGG + chr3_1:80592078-80592097 None:intergenic 35.0%
AACGAAGAGAATAAGGATTG+AGG + chr3_1:80592079-80592098 None:intergenic 35.0%
AGTAGAATGAGAGAGTTGTT+TGG + chr3_1:80592144-80592163 None:intergenic 35.0%
CAAAGAACGAATATCTTCAG+TGG + chr3_1:80592273-80592292 None:intergenic 35.0%
! GCAACTGCTATTTGACAAAA+CGG + chr3_1:80592676-80592695 None:intergenic 35.0%
TATAGCACACTATAGCATAG+CGG - chr3_1:80592777-80592796 Msa0379450:CDS 35.0%
! CTGAAATTTTCACACCCATT+AGG - chr3_1:80593089-80593108 Msa0379450:intron 35.0%
! GAAATTTTCACACCCATTAG+GGG - chr3_1:80593091-80593110 Msa0379450:intron 35.0%
GTGTTATCTTATCCCCTAAT+GGG + chr3_1:80593106-80593125 None:intergenic 35.0%
TGTGTTATCTTATCCCCTAA+TGG + chr3_1:80593107-80593126 None:intergenic 35.0%
CTTCTGTTGTGGAATTTACT+TGG - chr3_1:80593163-80593182 Msa0379450:intron 35.0%
GGAATTTACTTGGCATCTAT+AGG - chr3_1:80593173-80593192 Msa0379450:intron 35.0%
TTTACTTGGCATCTATAGGA+AGG - chr3_1:80593177-80593196 Msa0379450:intron 35.0%
TTACTTGGCATCTATAGGAA+GGG - chr3_1:80593178-80593197 Msa0379450:intron 35.0%
TTATTCTTTGAATGCTGCGT+AGG - chr3_1:80593226-80593245 Msa0379450:intron 35.0%
!!! CCTCAAGGAGTTTTTTGATT+CGG - chr3_1:80593382-80593401 Msa0379450:intron 35.0%
!!! CTCAAGGAGTTTTTTGATTC+GGG - chr3_1:80593383-80593402 Msa0379450:intron 35.0%
AGCTTCTTTCTTAGACTTGA+AGG + chr3_1:80593483-80593502 None:intergenic 35.0%
AGTTACCTTTCCTTCAAACT+CGG + chr3_1:80593519-80593538 None:intergenic 35.0%
! TTCTGCAGAATTTTATGGGA+AGG - chr3_1:80593680-80593699 Msa0379450:CDS 35.0%
! CAATCAAAACGTTTGAAGCA+AGG + chr3_1:80593842-80593861 None:intergenic 35.0%
CTATATGGGGGATTAAGAAT+AGG - chr3_1:80594168-80594187 Msa0379450:exon 35.0%
! TTTTCCACCCCTTATCCATT+TGG - chr3_1:80591877-80591896 Msa0379450:three_prime_UTR 40.0%
GGGATGAAACCAAATGGATA+AGG + chr3_1:80591889-80591908 None:intergenic 40.0%
! GTTTCAGAGCATCTCAGTTT+GGG + chr3_1:80591944-80591963 None:intergenic 40.0%
! AGTTTCAGAGCATCTCAGTT+TGG + chr3_1:80591945-80591964 None:intergenic 40.0%
!! CTGAGATGCTCTGAAACTAA+TGG - chr3_1:80591947-80591966 Msa0379450:three_prime_UTR 40.0%
CTTGTCAAAGTCGAAAGAGT+TGG + chr3_1:80592042-80592061 None:intergenic 40.0%
TGGGGTATGAGTATGAGTAA+TGG + chr3_1:80592105-80592124 None:intergenic 40.0%
TGGTTGTGATAATAAGGGCT+GGG + chr3_1:80592124-80592143 None:intergenic 40.0%
TTGGTTGTGATAATAAGGGC+TGG + chr3_1:80592125-80592144 None:intergenic 40.0%
AACATTCTGAGCAAGTAACC+TGG + chr3_1:80592237-80592256 None:intergenic 40.0%
TACTTGCTCAGAATGTTCCA+TGG - chr3_1:80592240-80592259 Msa0379450:intron 40.0%
TGGAAAAGTCCTTGATGTTG+AGG - chr3_1:80592304-80592323 Msa0379450:intron 40.0%
GGTTTAGCGTTTGTGGAAAT+GGG - chr3_1:80592469-80592488 Msa0379450:intron 40.0%
GGGTGTGAAAATTTCAGTGA+TGG + chr3_1:80593086-80593105 None:intergenic 40.0%
! GGCCGTATTTTCTCCTTTTT+AGG + chr3_1:80593290-80593309 None:intergenic 40.0%
AGTAAGGTCTAAAGACCTCA+AGG - chr3_1:80593367-80593386 Msa0379450:intron 40.0%
CCGAATCAAAAAACTCCTTG+AGG + chr3_1:80593385-80593404 None:intergenic 40.0%
!!! GAGTTTTTTGATTCGGGAAC+TGG - chr3_1:80593389-80593408 Msa0379450:intron 40.0%
!! TGGTAAAGTTGTTTCTGCAG+AGG - chr3_1:80593409-80593428 Msa0379450:intron 40.0%
TCTTTCATGAGAACCCTAGA+CGG - chr3_1:80593435-80593454 Msa0379450:intron 40.0%
GACACAAATCCATAACCAGA+TGG + chr3_1:80593461-80593480 None:intergenic 40.0%
ACCGCAATTTCTTGGAGTTA+CGG - chr3_1:80593614-80593633 Msa0379450:CDS 40.0%
TCCGTAACTCCAAGAAATTG+CGG + chr3_1:80593618-80593637 None:intergenic 40.0%
! ATTTTATGGGAAGGCCACTA+AGG - chr3_1:80593689-80593708 Msa0379450:intron 40.0%
! TTTTATGGGAAGGCCACTAA+GGG - chr3_1:80593690-80593709 Msa0379450:intron 40.0%
AGTTGAACAAACCGCTTACT+AGG + chr3_1:80593721-80593740 None:intergenic 40.0%
! TAGTAAGCGGTTTGTTCAAC+TGG - chr3_1:80593720-80593739 Msa0379450:intron 40.0%
! TTTTCCACCCCTTATCCATT+TGG - chr3_1:80591877-80591896 Msa0379450:three_prime_UTR 40.0%
GGGATGAAACCAAATGGATA+AGG + chr3_1:80591889-80591908 None:intergenic 40.0%
! GTTTCAGAGCATCTCAGTTT+GGG + chr3_1:80591944-80591963 None:intergenic 40.0%
! AGTTTCAGAGCATCTCAGTT+TGG + chr3_1:80591945-80591964 None:intergenic 40.0%
!! CTGAGATGCTCTGAAACTAA+TGG - chr3_1:80591947-80591966 Msa0379450:three_prime_UTR 40.0%
CTTGTCAAAGTCGAAAGAGT+TGG + chr3_1:80592042-80592061 None:intergenic 40.0%
TGGGGTATGAGTATGAGTAA+TGG + chr3_1:80592105-80592124 None:intergenic 40.0%
TGGTTGTGATAATAAGGGCT+GGG + chr3_1:80592124-80592143 None:intergenic 40.0%
TTGGTTGTGATAATAAGGGC+TGG + chr3_1:80592125-80592144 None:intergenic 40.0%
AACATTCTGAGCAAGTAACC+TGG + chr3_1:80592237-80592256 None:intergenic 40.0%
TACTTGCTCAGAATGTTCCA+TGG - chr3_1:80592240-80592259 Msa0379450:intron 40.0%
TGGAAAAGTCCTTGATGTTG+AGG - chr3_1:80592304-80592323 Msa0379450:intron 40.0%
GGTTTAGCGTTTGTGGAAAT+GGG - chr3_1:80592469-80592488 Msa0379450:intron 40.0%
GGGTGTGAAAATTTCAGTGA+TGG + chr3_1:80593086-80593105 None:intergenic 40.0%
! GGCCGTATTTTCTCCTTTTT+AGG + chr3_1:80593290-80593309 None:intergenic 40.0%
AGTAAGGTCTAAAGACCTCA+AGG - chr3_1:80593367-80593386 Msa0379450:intron 40.0%
CCGAATCAAAAAACTCCTTG+AGG + chr3_1:80593385-80593404 None:intergenic 40.0%
!!! GAGTTTTTTGATTCGGGAAC+TGG - chr3_1:80593389-80593408 Msa0379450:intron 40.0%
!! TGGTAAAGTTGTTTCTGCAG+AGG - chr3_1:80593409-80593428 Msa0379450:intron 40.0%
TCTTTCATGAGAACCCTAGA+CGG - chr3_1:80593435-80593454 Msa0379450:intron 40.0%
GACACAAATCCATAACCAGA+TGG + chr3_1:80593461-80593480 None:intergenic 40.0%
ACCGCAATTTCTTGGAGTTA+CGG - chr3_1:80593614-80593633 Msa0379450:CDS 40.0%
TCCGTAACTCCAAGAAATTG+CGG + chr3_1:80593618-80593637 None:intergenic 40.0%
! ATTTTATGGGAAGGCCACTA+AGG - chr3_1:80593689-80593708 Msa0379450:intron 40.0%
! TTTTATGGGAAGGCCACTAA+GGG - chr3_1:80593690-80593709 Msa0379450:intron 40.0%
AGTTGAACAAACCGCTTACT+AGG + chr3_1:80593721-80593740 None:intergenic 40.0%
! TAGTAAGCGGTTTGTTCAAC+TGG - chr3_1:80593720-80593739 Msa0379450:intron 40.0%
GAAACCAAATGGATAAGGGG+TGG + chr3_1:80591884-80591903 None:intergenic 45.0%
GCTATGGGGATGAAACCAAA+TGG + chr3_1:80591895-80591914 None:intergenic 45.0%
GGTTGTGATAATAAGGGCTG+GGG + chr3_1:80592123-80592142 None:intergenic 45.0%
! TTGGGTTTGTTCGGAAGTAG+AGG + chr3_1:80592177-80592196 None:intergenic 45.0%
! GGTGGTTACTTGGGTTTGTT+CGG + chr3_1:80592186-80592205 None:intergenic 45.0%
TTGTTCCTCGGTGGTTACTT+GGG + chr3_1:80592195-80592214 None:intergenic 45.0%
TTTGTTCCTCGGTGGTTACT+TGG + chr3_1:80592196-80592215 None:intergenic 45.0%
! GAACTCTTCGGTTTGTTCCT+CGG + chr3_1:80592207-80592226 None:intergenic 45.0%
CCTGGTAGTAGAGAACTCTT+CGG + chr3_1:80592219-80592238 None:intergenic 45.0%
TCTTCAGTGGTACTTGACCA+TGG + chr3_1:80592260-80592279 None:intergenic 45.0%
AAACAGGGGTTTAGCGTTTG+TGG - chr3_1:80592462-80592481 Msa0379450:intron 45.0%
GGGTTTAGCGTTTGTGGAAA+TGG - chr3_1:80592468-80592487 Msa0379450:intron 45.0%
CGGGCTTACATACATACGAT+TGG + chr3_1:80592531-80592550 None:intergenic 45.0%
GCGTCAAATAGCAGTCATAG+TGG - chr3_1:80592751-80592770 Msa0379450:CDS 45.0%
AATGCTGCGTAGGAGTTTGA+CGG - chr3_1:80593236-80593255 Msa0379450:intron 45.0%
AAATACGGCCATCAGTGGAA+CGG - chr3_1:80593300-80593319 Msa0379450:intron 45.0%
TCTTGCCGAGTTTGAAGGAA+AGG - chr3_1:80593511-80593530 Msa0379450:intron 45.0%
! TAAGCGGTTTGTTCAACTGG+CGG - chr3_1:80593723-80593742 Msa0379450:intron 45.0%
! TTCTGAGTTGAGCGTCAATG+AGG - chr3_1:80593774-80593793 Msa0379450:intron 45.0%
GAAACCAAATGGATAAGGGG+TGG + chr3_1:80591884-80591903 None:intergenic 45.0%
GCTATGGGGATGAAACCAAA+TGG + chr3_1:80591895-80591914 None:intergenic 45.0%
GGTTGTGATAATAAGGGCTG+GGG + chr3_1:80592123-80592142 None:intergenic 45.0%
! TTGGGTTTGTTCGGAAGTAG+AGG + chr3_1:80592177-80592196 None:intergenic 45.0%
! GGTGGTTACTTGGGTTTGTT+CGG + chr3_1:80592186-80592205 None:intergenic 45.0%
TTGTTCCTCGGTGGTTACTT+GGG + chr3_1:80592195-80592214 None:intergenic 45.0%
TTTGTTCCTCGGTGGTTACT+TGG + chr3_1:80592196-80592215 None:intergenic 45.0%
! GAACTCTTCGGTTTGTTCCT+CGG + chr3_1:80592207-80592226 None:intergenic 45.0%
CCTGGTAGTAGAGAACTCTT+CGG + chr3_1:80592219-80592238 None:intergenic 45.0%
TCTTCAGTGGTACTTGACCA+TGG + chr3_1:80592260-80592279 None:intergenic 45.0%
AAACAGGGGTTTAGCGTTTG+TGG - chr3_1:80592462-80592481 Msa0379450:intron 45.0%
GGGTTTAGCGTTTGTGGAAA+TGG - chr3_1:80592468-80592487 Msa0379450:intron 45.0%
CGGGCTTACATACATACGAT+TGG + chr3_1:80592531-80592550 None:intergenic 45.0%
GCGTCAAATAGCAGTCATAG+TGG - chr3_1:80592751-80592770 Msa0379450:CDS 45.0%
AATGCTGCGTAGGAGTTTGA+CGG - chr3_1:80593236-80593255 Msa0379450:intron 45.0%
AAATACGGCCATCAGTGGAA+CGG - chr3_1:80593300-80593319 Msa0379450:intron 45.0%
TCTTGCCGAGTTTGAAGGAA+AGG - chr3_1:80593511-80593530 Msa0379450:intron 45.0%
! TAAGCGGTTTGTTCAACTGG+CGG - chr3_1:80593723-80593742 Msa0379450:intron 45.0%
! TTCTGAGTTGAGCGTCAATG+AGG - chr3_1:80593774-80593793 Msa0379450:intron 45.0%
ACAAACCCAAGTAACCACCG+AGG - chr3_1:80592187-80592206 Msa0379450:three_prime_UTR 50.0%
CCGAAGAGTTCTCTACTACC+AGG - chr3_1:80592216-80592235 Msa0379450:intron 50.0%
AGAGCTGCAGAAGCTTCTTC+AGG + chr3_1:80592499-80592518 None:intergenic 50.0%
GGAGAAAATACGGCCATCAG+TGG - chr3_1:80593295-80593314 Msa0379450:intron 50.0%
! ATTGGCTTCCGTTCCACTGA+TGG + chr3_1:80593311-80593330 None:intergenic 50.0%
CATAACCAGATGGCCGTCTA+GGG + chr3_1:80593451-80593470 None:intergenic 50.0%
GAAGCTCTTGCCGAGTTTGA+AGG - chr3_1:80593506-80593525 Msa0379450:intron 50.0%
! TTACTAGGTGCCACCCTTAG+TGG + chr3_1:80593706-80593725 None:intergenic 50.0%
TAAGGGTGGCACCTAGTAAG+CGG - chr3_1:80593707-80593726 Msa0379450:intron 50.0%
ACAAACCCAAGTAACCACCG+AGG - chr3_1:80592187-80592206 Msa0379450:three_prime_UTR 50.0%
CCGAAGAGTTCTCTACTACC+AGG - chr3_1:80592216-80592235 Msa0379450:intron 50.0%
AGAGCTGCAGAAGCTTCTTC+AGG + chr3_1:80592499-80592518 None:intergenic 50.0%
GGAGAAAATACGGCCATCAG+TGG - chr3_1:80593295-80593314 Msa0379450:intron 50.0%
! ATTGGCTTCCGTTCCACTGA+TGG + chr3_1:80593311-80593330 None:intergenic 50.0%
CATAACCAGATGGCCGTCTA+GGG + chr3_1:80593451-80593470 None:intergenic 50.0%
GAAGCTCTTGCCGAGTTTGA+AGG - chr3_1:80593506-80593525 Msa0379450:intron 50.0%
! TTACTAGGTGCCACCCTTAG+TGG + chr3_1:80593706-80593725 None:intergenic 50.0%
TAAGGGTGGCACCTAGTAAG+CGG - chr3_1:80593707-80593726 Msa0379450:intron 50.0%
! CTCTTCGGTTTGTTCCTCGG+TGG + chr3_1:80592204-80592223 None:intergenic 55.0%
CCATAACCAGATGGCCGTCT+AGG + chr3_1:80593452-80593471 None:intergenic 55.0%
CCTAGACGGCCATCTGGTTA+TGG - chr3_1:80593449-80593468 Msa0379450:intron 55.0%
TATGGGAAGGCCACTAAGGG+TGG - chr3_1:80593693-80593712 Msa0379450:intron 55.0%
! CTCTTCGGTTTGTTCCTCGG+TGG + chr3_1:80592204-80592223 None:intergenic 55.0%
CCATAACCAGATGGCCGTCT+AGG + chr3_1:80593452-80593471 None:intergenic 55.0%
CCTAGACGGCCATCTGGTTA+TGG - chr3_1:80593449-80593468 Msa0379450:intron 55.0%
TATGGGAAGGCCACTAAGGG+TGG - chr3_1:80593693-80593712 Msa0379450:intron 55.0%
GAGAACCCTAGACGGCCATC+TGG - chr3_1:80593443-80593462 Msa0379450:intron 60.0%
! GCGGTTTGTTCAACTGGCGG+AGG - chr3_1:80593726-80593745 Msa0379450:intron 60.0%
! AACTGGCGGAGGAGAGTGCA+GGG - chr3_1:80593737-80593756 Msa0379450:intron 60.0%
GAGAACCCTAGACGGCCATC+TGG - chr3_1:80593443-80593462 Msa0379450:intron 60.0%
! GCGGTTTGTTCAACTGGCGG+AGG - chr3_1:80593726-80593745 Msa0379450:intron 60.0%
! AACTGGCGGAGGAGAGTGCA+GGG - chr3_1:80593737-80593756 Msa0379450:intron 60.0%
! CAACTGGCGGAGGAGAGTGC+AGG - chr3_1:80593736-80593755 Msa0379450:intron 65.0%
! CAACTGGCGGAGGAGAGTGC+AGG - chr3_1:80593736-80593755 Msa0379450:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 80591855 80594286 80591855 ID=Msa0379450;Name=Msa0379450
chr3_1 mRNA 80591855 80594286 80591855 ID=Msa0379450-mRNA-1;Parent=Msa0379450;Name=Msa0379450-mRNA-1;_AED=0.04;_eAED=0.04;_QI=111|1|1|1|0.75|0.6|5|377|291
chr3_1 exon 80591855 80592218 80591855 ID=Msa0379450-mRNA-1:exon:20165;Parent=Msa0379450-mRNA-1
chr3_1 exon 80592309 80592453 80592309 ID=Msa0379450-mRNA-1:exon:20164;Parent=Msa0379450-mRNA-1
chr3_1 exon 80592609 80592893 80592609 ID=Msa0379450-mRNA-1:exon:20163;Parent=Msa0379450-mRNA-1
chr3_1 exon 80593604 80593702 80593604 ID=Msa0379450-mRNA-1:exon:20162;Parent=Msa0379450-mRNA-1
chr3_1 exon 80593816 80594286 80593816 ID=Msa0379450-mRNA-1:exon:20161;Parent=Msa0379450-mRNA-1
chr3_1 five_prime_UTR 80594176 80594286 80594176 ID=Msa0379450-mRNA-1:five_prime_utr;Parent=Msa0379450-mRNA-1
chr3_1 CDS 80593816 80594175 80593816 ID=Msa0379450-mRNA-1:cds;Parent=Msa0379450-mRNA-1
chr3_1 CDS 80593604 80593702 80593604 ID=Msa0379450-mRNA-1:cds;Parent=Msa0379450-mRNA-1
chr3_1 CDS 80592609 80592893 80592609 ID=Msa0379450-mRNA-1:cds;Parent=Msa0379450-mRNA-1
chr3_1 CDS 80592322 80592453 80592322 ID=Msa0379450-mRNA-1:cds;Parent=Msa0379450-mRNA-1
chr3_1 three_prime_UTR 80592309 80592321 80592309 ID=Msa0379450-mRNA-1:three_prime_utr;Parent=Msa0379450-mRNA-1
chr3_1 three_prime_UTR 80591855 80592218 80591855 ID=Msa0379450-mRNA-1:three_prime_utr;Parent=Msa0379450-mRNA-1
Gene Sequence

>Msa0379450

ATGGCGCTACTACGTACTACTACTGTTCCATGTCCAACTCAATTATCTTCCACAAAACACCATGTAATAATAACCAACTCTTTCGACTTTGACAAGAACAAACATTATTCCCTCAATCCTTATTCTCTTCGTTTATCCATTACTCATACTCATACCCCAGCCCTTATTATCACAACCAAACAACTCTCTCATTCTACTCTCACATTTGCCTCTACTTCCGAACAAACCCAAGTAACCACCGAGGAACAAACCGAAGAGTTCTCTACTACCAGGTTACTTGCTCAGAATGTTCCATGGTCAAGTACCACTGAAGATATTCGTTCTTTGTTTGAAAAATATGGAAAAGTCCTTGATGTTGAGCTTTCAATGTATAATAAGAACAGAAACAGGGGTTTAGCGTTTGTGGAAATGGGTTCTCCTGAAGAAGCTTCTGCAGCTCTCAATAGTCTCCAATCGTATGAGTTTGACGGCCGCGTAATAAATATCAAATATGCTAAGCCTAAAAAGGAGAAAATACGGCCATCAGTGGAACGGAAGCCAATAACATATAACTTGTTTGTCGCAAACATTTCTTATGAAGTAAGGTCTAAAGACCTCAAGGAGTTTTTTGATTCGGGAACTGGTAAAGTTGTTTCTGCAGAGGTTATCTTTCATGAGAACCCTAGACGGCCATCTGGTTATGGATTTGTGTCCTTCAAGTCTAAGAAAGAAGCTGATGAAGCTCTTGCCGAGTTTGAAGGAAAGAATTTTATGGGAAGGCCACTAAGGGTGGCACCTAGTAAGCGGTTTGTTCAACTGGCGGAGGAGAGTGCAGGGTCTGAAGATACATCTTCTGAGTTGAGCGTCAATGAGGAAGAAACCGACAAAACTGATTGA

Protein sequence

>Msa0379450

MALLRTTTVPCPTQLSSTKHHVIITNSFDFDKNKHYSLNPYSLRLSITHTHTPALIITTKQLSHSTLTFASTSEQTQVTTEEQTEEFSTTRLLAQNVPWSSTTEDIRSLFEKYGKVLDVELSMYNKNRNRGLAFVEMGSPEEASAALNSLQSYEFDGRVINIKYAKPKKEKIRPSVERKPITYNLFVANISYEVRSKDLKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSFKSKKEADEALAEFEGKNFMGRPLRVAPSKRFVQLAEESAGSEDTSSELSVNEEETDKTD*