AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1356610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356610 MtrunA17_Chr7g0262801 100.000 445 0 0 1 445 1 445 0.0 896
Msa1356610 MtrunA17_Chr1g0182711 96.644 447 12 2 1 445 1 446 0.0 862
Msa1356610 MtrunA17_Chr4g0050561 48.556 381 185 4 65 437 30 407 2.43e-115 344
Msa1356610 MtrunA17_Chr1g0192151 45.669 381 185 2 77 436 37 416 4.33e-112 336
Msa1356610 MtrunA17_Chr4g0014731 44.737 380 189 1 78 436 38 417 8.75e-112 335
Msa1356610 MtrunA17_Chr3g0108321 52.288 306 141 3 67 370 40 342 1.01e-111 333
Msa1356610 MtrunA17_Chr3g0145011 46.092 371 193 2 73 436 18 388 2.74e-107 323
Msa1356610 MtrunA17_Chr3g0141901 45.251 358 196 0 79 436 28 385 2.91e-105 318
Msa1356610 MtrunA17_Chr8g0345461 46.334 341 175 3 111 445 85 423 1.27e-104 317
Msa1356610 MtrunA17_Chr1g0200081 49.201 313 154 3 135 445 123 432 2.18e-101 309
Msa1356610 MtrunA17_Chr7g0264521 47.577 227 116 1 189 415 208 431 3.76e-61 213
Msa1356610 MtrunA17_Chr7g0264521 41.026 234 138 0 181 414 473 706 2.82e-53 191
Msa1356610 MtrunA17_Chr7g0217421 44.490 245 135 1 188 432 40 283 5.73e-61 203
Msa1356610 MtrunA17_Chr1g0180791 47.137 227 117 1 189 415 207 430 2.28e-60 210
Msa1356610 MtrunA17_Chr1g0180791 41.453 234 137 0 181 414 472 705 3.15e-54 193
Msa1356610 MtrunA17_Chr2g0327121 46.256 227 119 2 189 415 209 432 2.47e-56 199
Msa1356610 MtrunA17_Chr2g0327121 41.453 234 137 0 181 414 474 707 5.36e-53 190
Msa1356610 MtrunA17_Chr4g0052411 40.816 245 144 1 188 432 230 473 3.74e-56 197
Msa1356610 MtrunA17_Chr2g0297281 41.224 245 143 1 188 432 287 530 6.72e-55 194
Msa1356610 MtrunA17_Chr7g0248361 37.377 305 177 5 141 432 136 439 1.73e-54 192
Msa1356610 MtrunA17_Chr7g0255651 39.095 243 148 0 172 414 267 509 1.86e-54 191
Msa1356610 MtrunA17_Chr7g0255651 26.923 234 157 4 210 431 36 267 7.35e-19 89.4
Msa1356610 MtrunA17_Chr4g0031821 43.320 247 136 3 189 432 322 567 2.13e-54 194
Msa1356610 MtrunA17_Chr8g0388371 39.841 251 142 2 189 431 406 655 8.76e-53 190
Msa1356610 MtrunA17_Chr7g0260601 42.972 249 134 4 189 432 242 487 1.38e-52 187
Msa1356610 MtrunA17_Chr6g0476861 39.576 283 165 4 155 432 163 444 4.51e-52 186
Msa1356610 MtrunA17_Chr3g0094871 41.463 246 141 2 189 432 13 257 1.07e-51 180
Msa1356610 MtrunA17_Chr5g0429571 42.520 254 138 4 182 430 308 558 1.81e-51 185
Msa1356610 MtrunA17_Chr3g0143721 39.592 245 147 1 188 432 250 493 2.59e-51 184
Msa1356610 MtrunA17_Chr3g0104211 42.063 252 142 3 182 430 299 549 1.69e-50 182
Msa1356610 MtrunA17_Chr7g0255691 38.168 262 160 1 172 431 271 532 1.92e-49 176
Msa1356610 MtrunA17_Chr7g0255691 30.000 220 148 3 192 407 22 239 2.22e-24 105
Msa1356610 MtrunA17_Chr8g0362771 39.754 244 144 2 189 432 239 479 2.20e-48 176
Msa1356610 MtrunA17_Chr3g0135721 37.943 282 164 3 152 433 196 466 3.00e-48 176
Msa1356610 MtrunA17_Chr2g0331161 40.079 252 147 2 189 437 417 667 3.93e-48 176
Msa1356610 MtrunA17_Chr2g0316851 38.723 235 133 4 186 413 593 823 1.22e-47 176
Msa1356610 MtrunA17_Chr7g0255641 40.562 249 145 2 185 431 656 903 1.61e-47 175
Msa1356610 MtrunA17_Chr7g0255641 35.047 214 123 5 226 428 432 640 1.66e-28 119
Msa1356610 MtrunA17_Chr4g0033451 40.164 244 137 3 188 425 381 621 8.61e-47 173
Msa1356610 MtrunA17_Chr6g0456351 40.891 247 140 3 189 433 319 561 9.86e-47 170
Msa1356610 MtrunA17_Chr7g0255721 40.637 251 146 2 183 431 681 930 6.98e-46 170
Msa1356610 MtrunA17_Chr7g0255721 32.218 239 153 4 186 420 385 618 1.44e-29 122
Msa1356610 MtrunA17_Chr1g0158881 37.600 250 147 3 186 433 328 570 1.08e-45 169
Msa1356610 MtrunA17_Chr3g0135761 36.140 285 171 3 149 433 191 464 1.33e-44 165
Msa1356610 MtrunA17_Chr5g0432631 39.184 245 145 2 189 433 231 471 3.48e-43 162
Msa1356610 MtrunA17_Chr7g0255901 39.676 247 140 7 177 418 629 871 4.49e-43 162
Msa1356610 MtrunA17_Chr2g0277831 39.381 226 135 2 189 413 245 469 1.67e-42 160
Msa1356610 MtrunA17_Chr2g0277831 38.627 233 138 3 185 415 531 760 7.72e-40 152
Msa1356610 MtrunA17_Chr4g0004121 36.923 260 150 5 181 431 236 490 3.01e-42 156
Msa1356610 MtrunA17_Chr5g0397121 36.327 245 148 4 188 429 514 753 2.23e-41 157
Msa1356610 MtrunA17_Chr1g0195731 38.961 231 132 5 188 414 935 1160 7.47e-41 155
Msa1356610 MtrunA17_Chr7g0246111 36.626 243 145 5 175 414 200 436 2.28e-40 150
Msa1356610 MtrunA17_Chr1g0204031 38.261 230 134 5 188 414 558 782 3.74e-40 153
Msa1356610 MtrunA17_Chr4g0026631 35.662 272 143 11 181 445 121 367 1.01e-39 147
Msa1356610 MtrunA17_Chr3g0129971 39.149 235 132 5 188 414 297 528 1.19e-39 152
Msa1356610 MtrunA17_Chr8g0387641 35.217 230 141 4 188 414 522 746 2.02e-39 151
Msa1356610 MtrunA17_Chr4g0038101 37.391 230 135 5 189 414 723 947 2.20e-39 151
Msa1356610 MtrunA17_Chr1g0202371 37.391 230 135 5 188 414 398 621 2.47e-39 150
Msa1356610 MtrunA17_Chr1g0195741 37.662 231 135 5 188 414 939 1164 2.56e-39 151
Msa1356610 MtrunA17_Chr2g0321241 34.328 268 152 9 181 445 126 372 3.37e-39 146
Msa1356610 MtrunA17_Chr3g0116131 37.333 225 132 5 188 408 903 1122 3.61e-38 147
Msa1356610 MtrunA17_Chr4g0052271 36.170 235 143 5 181 413 113 342 9.89e-38 141
Msa1356610 MtrunA17_Chr4g0043381 34.956 226 144 1 189 414 839 1061 2.45e-37 145
Msa1356610 MtrunA17_Chr6g0462581 36.522 230 137 5 188 414 501 724 3.82e-37 144
Msa1356610 MtrunA17_Chr1g0202381 36.522 230 138 5 188 414 469 693 4.10e-37 144
Msa1356610 MtrunA17_Chr2g0327231 41.566 166 97 0 182 347 341 506 1.43e-36 140
Msa1356610 MtrunA17_Chr2g0327231 47.727 88 42 1 189 276 155 238 5.76e-19 89.4
Msa1356610 MtrunA17_Chr3g0127401 36.957 230 135 5 189 414 83 306 2.09e-36 137
Msa1356610 MtrunA17_Chr6g0459561 36.992 246 141 8 176 415 371 608 6.10e-35 137
Msa1356610 MtrunA17_Chr3g0086401 38.306 248 126 5 189 414 387 629 1.03e-34 137
Msa1356610 MtrunA17_Chr3g0086401 35.111 225 128 6 199 413 106 322 9.95e-30 122
Msa1356610 MtrunA17_Chr3g0086411 34.733 262 150 4 172 415 200 458 4.28e-34 133
Msa1356610 MtrunA17_Chr3g0086411 38.194 144 83 2 275 412 7 150 1.47e-18 87.8
Msa1356610 MtrunA17_Chr5g0432641 34.191 272 171 4 166 433 166 433 1.02e-33 134
Msa1356610 MtrunA17_Chr4g0047411 33.569 283 159 7 177 432 166 446 1.76e-33 133
Msa1356610 MtrunA17_Chr3g0127431 35.931 231 136 6 189 414 86 309 7.15e-33 128
Msa1356610 MtrunA17_Chr1g0168321 31.597 288 140 6 155 432 134 374 8.23e-33 130
Msa1356610 MtrunA17_Chr8g0357301 32.245 245 152 3 195 430 477 716 5.17e-32 129
Msa1356610 MtrunA17_Chr4g0062081 70.886 79 22 1 190 267 10 88 5.74e-32 117
Msa1356610 MtrunA17_Chr3g0135781 41.615 161 90 2 189 349 57 213 2.29e-31 119
Msa1356610 MtrunA17_Chr6g0459541 33.206 262 138 10 183 414 38 292 1.20e-30 121
Msa1356610 MtrunA17_Chr2g0289231 35.498 231 128 7 188 407 298 518 1.46e-30 124
Msa1356610 MtrunA17_Chr6g0459551 34.071 226 128 7 181 400 96 306 6.36e-26 109
Msa1356610 MtrunA17_Chr5g0432391 37.278 169 97 2 265 430 81 243 1.27e-23 102
Msa1356610 MtrunA17_Chr1g0190401 31.527 203 134 3 172 370 659 860 1.34e-22 101
Msa1356610 MtrunA17_Chr8g0372701 35.260 173 98 6 191 357 225 389 2.19e-14 75.1
Msa1356610 MtrunA17_Chr5g0404651 34.783 161 92 5 202 357 229 381 5.97e-14 73.9
Msa1356610 MtrunA17_Chr5g0404291 35.664 143 78 5 223 361 387 519 6.65e-14 73.9
Msa1356610 MtrunA17_Chr2g0292561 32.934 167 83 7 214 359 226 384 4.47e-12 67.8
Msa1356610 MtrunA17_Chr6g0466811 33.974 156 83 6 214 357 236 383 6.16e-12 67.4
Msa1356610 MtrunA17_Chr6g0452361 31.818 154 90 5 211 357 18 163 1.24e-11 65.1
Msa1356610 MtrunA17_Chr2g0315971 29.891 184 112 7 194 369 477 651 1.27e-11 67.0
Msa1356610 MtrunA17_Chr2g0315971 29.947 187 117 7 191 371 198 376 2.54e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1356610 AT4G29040.1 95.730 445 17 2 1 445 1 443 0.0 854
Msa1356610 AT2G20140.1 95.506 445 18 2 1 445 1 443 0.0 852
Msa1356610 AT5G58290.1 51.381 362 172 2 66 426 33 391 6.43e-133 389
Msa1356610 AT5G20000.1 52.000 325 155 1 114 437 85 409 2.49e-112 337
Msa1356610 AT5G19990.1 51.692 325 156 1 114 437 85 409 3.89e-112 337
Msa1356610 AT5G19990.3 51.692 325 156 1 114 437 85 409 3.89e-112 337
Msa1356610 AT5G19990.2 51.692 325 156 1 114 437 27 351 4.95e-112 334
Msa1356610 AT1G09100.1 45.526 380 186 2 78 436 37 416 1.68e-110 332
Msa1356610 AT3G05530.1 46.006 363 175 1 95 436 55 417 1.95e-110 332
Msa1356610 AT1G45000.1 46.361 371 192 3 73 436 15 385 8.75e-106 320
Msa1356610 AT5G43010.1 46.429 364 191 2 77 436 22 385 3.77e-105 318
Msa1356610 AT1G53750.1 46.199 342 176 3 110 445 84 423 3.90e-104 316
Msa1356610 AT1G53780.3 46.199 342 174 4 111 445 256 594 5.92e-98 306
Msa1356610 AT1G53780.1 46.199 342 174 4 111 445 257 595 6.40e-98 306
Msa1356610 AT1G53780.4 46.199 342 174 4 111 445 257 595 6.40e-98 306
Msa1356610 AT1G53780.2 46.199 342 174 4 111 445 278 616 1.55e-97 305
Msa1356610 AT1G45000.2 44.867 263 138 3 73 328 15 277 2.18e-67 218
Msa1356610 AT3G53230.1 47.577 227 116 1 189 415 207 430 1.21e-60 211
Msa1356610 AT3G53230.1 40.323 248 148 0 181 428 472 719 3.14e-54 194
Msa1356610 AT5G03340.1 47.137 227 117 1 189 415 206 429 6.68e-60 209
Msa1356610 AT5G03340.1 41.453 234 137 0 181 414 471 704 5.16e-53 190
Msa1356610 AT3G09840.1 47.577 227 116 2 189 415 206 429 7.31e-60 209
Msa1356610 AT3G09840.1 41.702 235 136 1 181 414 471 705 3.66e-51 185
Msa1356610 AT2G30950.1 41.633 245 142 1 188 432 225 468 9.51e-57 199
Msa1356610 AT2G30950.2 41.633 245 142 1 188 432 225 468 9.51e-57 199
Msa1356610 AT2G30950.3 41.633 245 142 1 188 432 225 468 9.51e-57 199
Msa1356610 AT2G30950.4 41.633 245 142 1 188 432 229 472 9.53e-57 199
Msa1356610 AT1G07510.1 44.130 247 134 3 189 432 326 571 2.02e-55 197
Msa1356610 AT5G15250.1 43.673 245 137 1 188 432 222 465 4.22e-55 194
Msa1356610 AT1G06430.1 40.408 245 145 1 188 432 218 461 5.51e-55 194
Msa1356610 AT1G06430.3 40.408 245 145 1 188 432 218 461 5.51e-55 194
Msa1356610 AT1G06430.2 40.408 245 145 1 188 432 218 461 5.51e-55 194
Msa1356610 AT3G47060.1 44.355 248 130 4 188 430 323 567 5.37e-54 193
Msa1356610 AT5G58870.1 44.355 248 130 4 188 430 327 571 5.78e-54 193
Msa1356610 AT2G29080.1 44.309 246 134 2 189 432 321 565 1.50e-52 189
Msa1356610 AT5G15250.2 39.925 268 137 2 188 432 222 488 7.70e-52 182
Msa1356610 AT1G50250.1 39.592 245 147 1 188 432 260 503 1.67e-51 185
Msa1356610 AT4G23940.1 39.442 251 143 2 189 431 429 678 3.56e-51 186
Msa1356610 AT5G42270.1 38.776 245 149 1 188 432 248 491 2.72e-50 181
Msa1356610 AT3G15120.2 39.914 233 131 3 186 412 725 954 9.33e-50 182
Msa1356610 AT3G15120.1 39.914 233 131 3 186 412 715 944 9.96e-50 182
Msa1356610 AT1G05910.1 40.726 248 138 3 188 429 379 623 4.48e-49 180
Msa1356610 AT2G03670.1 38.400 250 151 2 185 431 281 530 4.91e-48 174
Msa1356610 AT2G03670.1 32.661 248 160 3 190 431 22 268 3.14e-35 138
Msa1356610 AT2G26140.1 40.408 245 142 2 189 433 226 466 1.04e-47 174
Msa1356610 AT3G56690.1 40.435 230 136 1 185 414 719 947 2.31e-47 175
Msa1356610 AT3G56690.1 41.837 196 110 2 219 413 413 605 7.36e-42 159
Msa1356610 AT3G16290.1 39.749 239 143 1 189 427 409 646 1.38e-46 172
Msa1356610 AT5G53170.1 37.200 250 148 3 186 433 358 600 3.27e-45 168
Msa1356610 AT3G02450.1 40.377 265 150 4 183 443 327 587 5.14e-45 166
Msa1356610 AT2G45500.4 35.743 249 149 6 170 414 63 304 1.42e-43 156
Msa1356610 AT2G45500.3 35.743 249 149 6 170 414 63 304 1.42e-43 156
Msa1356610 AT2G45500.1 35.178 253 153 6 166 414 196 441 2.28e-42 156
Msa1356610 AT2G45500.2 35.178 253 153 6 166 414 192 437 2.72e-42 156
Msa1356610 AT2G45500.5 35.178 253 153 6 166 414 202 447 3.64e-42 156
Msa1356610 AT1G03000.1 37.743 257 153 6 177 429 645 898 3.93e-42 159
Msa1356610 AT1G80350.1 36.154 260 152 5 181 431 230 484 1.20e-41 155
Msa1356610 AT1G02890.1 38.528 231 133 5 188 414 942 1167 1.64e-41 158
Msa1356610 AT4G02480.1 38.528 231 133 5 188 414 961 1186 1.85e-41 158
Msa1356610 AT5G08470.1 37.168 226 139 1 189 414 843 1065 2.12e-40 155
Msa1356610 AT4G28000.3 37.826 230 134 6 188 414 518 741 2.28e-40 154
Msa1356610 AT4G28000.2 37.826 230 134 6 188 414 518 741 2.49e-40 154
Msa1356610 AT5G08470.3 37.168 226 139 1 189 414 834 1056 2.55e-40 154
Msa1356610 AT4G28000.1 37.826 230 134 6 188 414 516 739 2.60e-40 154
Msa1356610 AT5G53540.1 37.391 230 134 5 189 414 86 309 1.10e-39 147
Msa1356610 AT2G34560.1 36.726 226 139 3 189 413 102 324 3.61e-39 145
Msa1356610 AT2G34560.2 36.726 226 139 3 189 413 111 333 5.07e-39 145
Msa1356610 AT3G01610.1 35.366 246 144 3 179 413 222 463 1.94e-38 149
Msa1356610 AT3G01610.1 36.123 227 140 3 189 414 527 749 3.07e-33 133
Msa1356610 AT3G01610.2 35.366 246 144 3 179 413 222 463 1.94e-38 149
Msa1356610 AT3G01610.2 36.123 227 140 3 189 414 527 749 3.19e-33 133
Msa1356610 AT1G64110.1 35.652 230 140 5 188 414 514 738 2.17e-38 148
Msa1356610 AT1G64110.2 35.652 230 140 5 188 414 519 743 2.17e-38 148
Msa1356610 AT1G64110.4 35.652 230 140 5 188 414 519 743 2.17e-38 148
Msa1356610 AT1G64110.5 35.652 230 140 5 188 414 517 741 2.18e-38 148
Msa1356610 AT1G64110.3 35.652 230 140 5 188 414 517 741 2.18e-38 148
Msa1356610 AT5G52882.1 36.957 230 136 6 188 414 515 738 4.74e-38 147
Msa1356610 AT5G64580.1 37.872 235 135 6 188 414 314 545 5.93e-38 147
Msa1356610 AT4G27680.1 36.797 231 134 6 189 414 83 306 4.60e-37 140
Msa1356610 AT2G27600.1 35.055 271 146 11 181 445 123 369 5.05e-37 140
Msa1356610 AT1G50140.2 37.500 232 132 6 189 414 691 915 5.25e-37 144
Msa1356610 AT1G50140.5 37.500 232 132 6 189 414 691 915 5.25e-37 144
Msa1356610 AT1G50140.3 37.500 232 132 6 189 414 713 937 6.29e-37 144
Msa1356610 AT1G50140.1 37.500 232 132 6 189 414 713 937 6.29e-37 144
Msa1356610 AT1G50140.4 37.500 232 132 6 189 414 713 937 6.29e-37 144
Msa1356610 AT2G03670.2 32.661 248 160 3 190 431 22 268 3.52e-36 138
Msa1356610 AT2G03670.2 38.732 142 86 1 185 325 281 422 1.63e-22 99.8
Msa1356610 AT4G24860.3 35.498 231 140 5 188 414 816 1041 8.04e-36 141
Msa1356610 AT4G24860.1 35.498 231 140 5 188 414 818 1043 8.83e-36 141
Msa1356610 AT4G24860.4 35.498 231 140 5 188 414 791 1016 9.06e-36 141
Msa1356610 AT4G24860.2 35.498 231 140 5 188 414 814 1039 1.08e-35 140
Msa1356610 AT3G19740.1 35.115 262 146 7 189 431 703 959 1.69e-35 140
Msa1356610 AT3G27120.1 35.510 245 144 8 176 414 389 625 6.28e-34 135
Msa1356610 AT1G79560.2 32.245 245 152 3 195 430 497 736 6.00e-32 129
Msa1356610 AT1G79560.3 32.245 245 152 3 195 430 497 736 6.24e-32 129
Msa1356610 AT1G79560.1 32.245 245 152 3 195 430 497 736 6.40e-32 129
Msa1356610 AT4G04180.1 35.371 229 131 6 188 407 317 537 1.05e-31 128
Msa1356610 AT4G04180.2 35.371 229 131 6 188 407 312 532 1.10e-31 128
Msa1356610 AT4G04910.1 33.094 278 157 8 177 427 203 478 4.23e-31 127
Msa1356610 AT1G62130.2 32.589 224 132 6 188 408 744 951 5.69e-28 117
Msa1356610 AT1G62130.1 32.589 224 132 6 188 408 751 958 6.20e-28 117
Msa1356610 AT1G02890.2 33.766 231 116 6 188 414 942 1139 1.97e-26 113
Msa1356610 AT3G04340.1 33.690 187 119 3 185 370 782 964 7.88e-23 102
Msa1356610 AT5G08470.2 35.135 148 93 1 189 336 843 987 7.76e-20 93.2
Msa1356610 AT2G18193.1 35.185 162 92 6 200 356 219 372 5.16e-13 71.2
Msa1356610 AT4G36580.1 34.694 147 74 6 223 361 381 513 4.72e-12 68.6
Msa1356610 AT2G18330.1 30.939 181 103 6 185 361 354 516 9.18e-12 67.8
Msa1356610 AT2G18190.1 33.333 165 94 5 200 356 220 376 2.17e-11 66.2
Msa1356610 AT3G28580.1 29.586 169 86 4 214 357 230 390 9.12e-11 64.3
Msa1356610 AT5G17760.1 34.437 151 83 5 214 356 243 385 9.87e-11 64.3

Find 137 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTTAATTTCCTGTATC+TGG 0.101599 tig0015812:+16440 Msa1356610:intergenic
CTCTTCAGTATTGTGAATTA+TGG 0.192739 tig0015812:-12944 Msa1356610:three_prime_UTR
CTTTGCAAGAAGTGTCTTTC+CGG 0.232867 tig0015812:+16327 Msa1356610:intergenic
TGTCGTTGCCGTCTGGTTTC+CGG 0.236164 tig0015812:+18007 Msa1356610:intergenic
CCATACCTTGTCGAGGATTA+TGG 0.247627 tig0015812:+12868 Msa1356610:intergenic
AAAAGTTCCCTCACAAGTTT+TGG 0.248853 tig0015812:+15418 Msa1356610:intergenic
GAGAGAGAGGGTTATATTAT+AGG 0.266376 tig0015812:+18127 Msa1356610:intergenic
AATCAAGGACTATTTGTTAA+TGG 0.271847 tig0015812:-17839 Msa1356610:CDS
CTGCCTCCTTTGTTTCATTT+CGG 0.273091 tig0015812:-13005 Msa1356610:three_prime_UTR
CAAACTTCGGTTACTGAAAC+TGG 0.308708 tig0015812:-17866 Msa1356610:CDS
ACCAGACGGCAACGACAAAA+AGG 0.312803 tig0015812:-18001 Msa1356610:CDS
TACCAGGTTCTTTCTGTTGT+TGG 0.324071 tig0015812:-16556 Msa1356610:intron
ATCTATACCTATTTATTCCT+TGG 0.327359 tig0015812:-12749 Msa1356610:three_prime_UTR
AGAAGTGTCTTTCCGGTTCC+AGG 0.334762 tig0015812:+16334 Msa1356610:intergenic
GTTAAAGAAAACTATAATTC+AGG 0.354276 tig0015812:+12912 Msa1356610:intergenic
GAAGGTTGAGAAGGCTCCTT+TGG 0.355174 tig0015812:-16494 Msa1356610:CDS
CCTGAACTGTATGAAGATAT+TGG 0.355232 tig0015812:-16394 Msa1356610:CDS
TACTAGCCCAAGGAATAAAT+AGG 0.361490 tig0015812:+12742 Msa1356610:intergenic
TTCTTTAATTTCCTGTATCT+GGG 0.365835 tig0015812:+16441 Msa1356610:intergenic
CCATATAAAATGACTCCCTT+TGG 0.372985 tig0015812:+16361 Msa1356610:intergenic
AGAAGAGTTTGTAGCGAATC+AGG 0.373755 tig0015812:-17815 Msa1356610:CDS
CACCAGGAGGCGGTTTGAAC+CGG 0.381250 tig0015812:-18041 Msa1356610:CDS
GTTATGTTTAAGAAGAAAGA+AGG 0.390674 tig0015812:-13073 Msa1356610:CDS
TATTTATTCCTTGGGCTAGT+AGG 0.391524 tig0015812:-12740 Msa1356610:three_prime_UTR
CTGGTGTTCCTTGACCCATA+TGG 0.391979 tig0015812:+18058 Msa1356610:intergenic
TAGAATCAAAACCATCTAAC+TGG 0.394542 tig0015812:+15111 Msa1356610:intergenic
TCAAGATTGCCAACACTCAT+AGG 0.399371 tig0015812:+17724 Msa1356610:intergenic
TATATTATAGGACGAGGAAT+TGG 0.401047 tig0015812:+18139 Msa1356610:intergenic
GTTTCCGGTCACCCGGTTGC+CGG 0.402127 tig0015812:+18022 Msa1356610:intergenic
AGCTGAAGAAGATAGATCTA+AGG 0.403467 tig0015812:-17767 Msa1356610:CDS
AGAAGAATTTGTCATGACTA+AGG 0.410103 tig0015812:-14813 Msa1356610:CDS
CCAATATCTTCATACAGTTC+AGG 0.412254 tig0015812:+16394 Msa1356610:intergenic
TCTATACCTATTTATTCCTT+GGG 0.416949 tig0015812:-12748 Msa1356610:three_prime_UTR
TCATGCTATTGTTTCAAGTT+CGG 0.419114 tig0015812:-17683 Msa1356610:CDS
AAGGAATAAATAGGTATAGA+TGG 0.426273 tig0015812:+12751 Msa1356610:intergenic
ATCAAGGCTTTCAATTCTGT+TGG 0.426673 tig0015812:+15061 Msa1356610:intergenic
AGGCGGTTTGAACCGGCAAC+CGG 0.426732 tig0015812:-18034 Msa1356610:CDS
AAATTTAGATACATACATCT+AGG 0.429419 tig0015812:-14862 Msa1356610:intron
GCAACATTCTTGCGTGTTGT+TGG 0.429964 tig0015812:-15475 Msa1356610:CDS
TGGTTTAGATGCCCAGATAC+AGG 0.432553 tig0015812:-16452 Msa1356610:CDS
CGAAGTTTGCACTTCGATAA+CGG 0.436584 tig0015812:+17880 Msa1356610:intergenic
TCGCAAACAGCGAAAACAAA+AGG 0.439274 tig0015812:-17938 Msa1356610:CDS
CCGTCTGGTTTCCGGTCACC+CGG 0.444415 tig0015812:+18015 Msa1356610:intergenic
TGTTTGCGACCGACGCGAGC+CGG 0.446908 tig0015812:+17952 Msa1356610:intergenic
GAGTTGCTGAACCAGTTAGA+TGG 0.449762 tig0015812:-15122 Msa1356610:CDS
CTTCACATATACAATCCTTC+AGG 0.456387 tig0015812:+13046 Msa1356610:intergenic
CCATAATCCTCGACAAGGTA+TGG 0.457171 tig0015812:-12868 Msa1356610:three_prime_UTR
TATAAAATGACTCCCTTTGG+AGG 0.457417 tig0015812:+16364 Msa1356610:intergenic
TGCCGGTTCAAACCGCCTCC+TGG 0.458290 tig0015812:+18039 Msa1356610:intergenic
CATACAGTTCAGGATGTGTA+AGG 0.459525 tig0015812:+16404 Msa1356610:intergenic
TTCATCAATAAAGACAATAG+AGG 0.461693 tig0015812:+15372 Msa1356610:intergenic
GTTGGACCGGAGTATTATGT+TGG 0.467154 tig0015812:-17661 Msa1356610:CDS
AGAAGAGTGAAGTGAGAGAG+AGG 0.469217 tig0015812:+18114 Msa1356610:intergenic
ATGACTAAGGATGAGTTCTC+TGG 0.469513 tig0015812:-14800 Msa1356610:CDS
ACGCGAGCCGGTGGTGCGGC+CGG 0.471755 tig0015812:+17964 Msa1356610:intergenic
AGTAACTTCTAACCTTCATT+CGG 0.472587 tig0015812:+14723 Msa1356610:intergenic
TTATGTTTAAGAAGAAAGAA+GGG 0.473265 tig0015812:-13072 Msa1356610:CDS
TTATATGGAGAACCTGGAAC+CGG 0.475592 tig0015812:-16346 Msa1356610:CDS
TGTTTCAAGTTCGGTTGGAC+CGG 0.476783 tig0015812:-17674 Msa1356610:CDS
TTTACGAGAACGCCGAATGA+AGG 0.481823 tig0015812:-14735 Msa1356610:intron
TGAACCGGCAACCGGGTGAC+CGG 0.482682 tig0015812:-18026 Msa1356610:CDS
CGACCTGGTCTTAGCAGAGC+TGG 0.483758 tig0015812:+15038 Msa1356610:intergenic
TTGGACCGGAGTATTATGTT+GGG 0.486241 tig0015812:-17660 Msa1356610:CDS
ACTGAAACTGGAACGAATCA+AGG 0.486524 tig0015812:-17854 Msa1356610:CDS
CTTTGTTGATAAGGATCAGT+TGG 0.488476 tig0015812:-17629 Msa1356610:CDS
CGAAATGAAACAAAGGAGGC+AGG 0.490517 tig0015812:+13006 Msa1356610:intergenic
CGCAAACAGCGAAAACAAAA+GGG 0.492686 tig0015812:-17937 Msa1356610:CDS
AAAGCAATATGTACCGAAGC+TGG 0.494002 tig0015812:-14767 Msa1356610:CDS
TCAGGAAAGGTTGAAGCCTC+AGG 0.495323 tig0015812:-17797 Msa1356610:CDS
GAAGAGTGAAGTGAGAGAGA+GGG 0.498910 tig0015812:+18115 Msa1356610:intergenic
TAAGACCAGGTCGAATAGAC+AGG 0.501709 tig0015812:-15028 Msa1356610:CDS
GGCTGCGTCGCGGTTGCCGA+CGG 0.504570 tig0015812:-17908 Msa1356610:CDS
ATTCGAACCGGCCGCACCAC+CGG 0.509282 tig0015812:-17971 Msa1356610:CDS
CGGCAACCGCGACGCAGCCT+CGG 0.510404 tig0015812:+17912 Msa1356610:intergenic
GCTATTGTTTCAAGTTCGGT+TGG 0.512463 tig0015812:-17679 Msa1356610:CDS
ACCTTCATTACAGAGACCAT+TGG 0.516269 tig0015812:+16511 Msa1356610:intergenic
TAAAGCAAGTAAGCCAGCTT+CGG 0.519256 tig0015812:+14754 Msa1356610:intergenic
TTATTCCTTGGGCTAGTAGG+AGG 0.524768 tig0015812:-12737 Msa1356610:three_prime_UTR
GTCTTAGCAGAGCTGGATCA+AGG 0.525057 tig0015812:+15045 Msa1356610:intergenic
TCTTCAGCTTTCTCCTCCTG+AGG 0.525355 tig0015812:+17781 Msa1356610:intergenic
CTCTGTAATGAAGGTTGAGA+AGG 0.525660 tig0015812:-16503 Msa1356610:CDS
CTCTCCCTGATATCAAAACT+AGG 0.526151 tig0015812:-14992 Msa1356610:CDS
CGTGGTTCGCCTATGAGTGT+TGG 0.527223 tig0015812:-17733 Msa1356610:CDS
TGCCTTCTTAAAATCAGCAT+GGG 0.528839 tig0015812:+13105 Msa1356610:intergenic
TCAAGATGAAGTTGATCCAA+TGG 0.539698 tig0015812:-16527 Msa1356610:CDS
TTGCCTTCTTAAAATCAGCA+TGG 0.546147 tig0015812:+13104 Msa1356610:intergenic
TCTAAGGTTGATGATCTTCG+TGG 0.546817 tig0015812:-17751 Msa1356610:CDS
ACCGACGCGAGCCGGTGGTG+CGG 0.547884 tig0015812:+17960 Msa1356610:intergenic
AAAGGACAAGAAATTCGAAC+CGG 0.554284 tig0015812:-17983 Msa1356610:CDS
ATTGATGAAATTGACGCTGT+TGG 0.554458 tig0015812:-15358 Msa1356610:CDS
GAATCATATGCTGACATTGG+TGG 0.555368 tig0015812:-16472 Msa1356610:CDS
GCCGCACCACCGGCTCGCGT+CGG 0.558486 tig0015812:-17961 Msa1356610:CDS
GAGGGTTATATTATAGGACG+AGG 0.565943 tig0015812:+18133 Msa1356610:intergenic
GGCGGTTTGAACCGGCAACC+GGG 0.577140 tig0015812:-18033 Msa1356610:CDS
TCCAATGGTCTCTGTAATGA+AGG 0.577840 tig0015812:-16512 Msa1356610:CDS
GAATGTTGCTGATGTTGAGT+TGG 0.578313 tig0015812:+15489 Msa1356610:intergenic
ATTGGTATCAAGCCTCCAAA+GGG 0.581334 tig0015812:-16376 Msa1356610:CDS
TATTGGTATCAAGCCTCCAA+AGG 0.581644 tig0015812:-16377 Msa1356610:CDS
CATATGGGTCAAGGAACACC+AGG 0.582913 tig0015812:-18057 Msa1356610:CDS
TCATCAATAAAGACAATAGA+GGG 0.582931 tig0015812:+15373 Msa1356610:intergenic
GAAATGAAACAAAGGAGGCA+GGG 0.585580 tig0015812:+13007 Msa1356610:intergenic
GATAAGGATCAGTTGGAACC+TGG 0.586516 tig0015812:-17622 Msa1356610:CDS
AAAGGAGGCAGGGGTAAATG+AGG 0.586817 tig0015812:+13017 Msa1356610:intergenic
TATGTTTAAGAAGAAAGAAG+GGG 0.587164 tig0015812:-13071 Msa1356610:CDS
GTGGAGAGCGTGAAATTCAA+AGG 0.587676 tig0015812:-15154 Msa1356610:CDS
AGATGGTCCAAAACTTGTGA+GGG 0.588030 tig0015812:-15425 Msa1356610:CDS
TACAGTTCAGGATGTGTAAG+GGG 0.589268 tig0015812:+16406 Msa1356610:intergenic
AAAACACCGAAATGAAACAA+AGG 0.594716 tig0015812:+12999 Msa1356610:intergenic
TGCATCAAAATAGCGCAACC+AGG 0.595025 tig0015812:+17604 Msa1356610:intergenic
ATACAGTTCAGGATGTGTAA+GGG 0.600073 tig0015812:+16405 Msa1356610:intergenic
TGCAGGTATGATGCTCACTC+AGG 0.601841 tig0015812:-15176 Msa1356610:intron
CGGAAAGACACTTCTTGCAA+AGG 0.603905 tig0015812:-16326 Msa1356610:intron
CGTTATCGAAGTGCAAACTT+CGG 0.605718 tig0015812:-17879 Msa1356610:CDS
AAATGAAACAAAGGAGGCAG+GGG 0.606531 tig0015812:+13008 Msa1356610:intergenic
TGAAATTCAAAGGACCATGT+TGG 0.608156 tig0015812:-15144 Msa1356610:CDS
GGTCAAGGAACACCAGGAGG+CGG 0.609421 tig0015812:-18051 Msa1356610:CDS
AAGAAAGAAGGGGTGCCTGA+AGG 0.613773 tig0015812:-13061 Msa1356610:CDS
AGTTTGTAGCGAATCAGGAA+AGG 0.618718 tig0015812:-17810 Msa1356610:CDS
TTGGAATCATATGCTGACAT+TGG 0.619347 tig0015812:-16475 Msa1356610:CDS
TTGCGACCGACGCGAGCCGG+TGG 0.620039 tig0015812:+17955 Msa1356610:intergenic
CTGGTTCAGCAACTCCAACA+TGG 0.624925 tig0015812:+15130 Msa1356610:intergenic
CCGGGTGACCGGAAACCAGA+CGG 0.626668 tig0015812:-18015 Msa1356610:CDS
GATCCAGCTCTGCTAAGACC+AGG 0.627123 tig0015812:-15041 Msa1356610:CDS
CAACTGATCCTTATCAACAA+AGG 0.630631 tig0015812:+17630 Msa1356610:intergenic
GAGATGGTCCAAAACTTGTG+AGG 0.639633 tig0015812:-15426 Msa1356610:CDS
TTGACGCTGTTGGTACAAAG+AGG 0.641384 tig0015812:-15348 Msa1356610:intron
ATGTCAGCATATGATTCCAA+AGG 0.644573 tig0015812:+16478 Msa1356610:intergenic
GGAAAGGTTGAAGCCTCAGG+AGG 0.645072 tig0015812:-17794 Msa1356610:CDS
AAAATCCCAACATAATACTC+CGG 0.653134 tig0015812:+17655 Msa1356610:intergenic
GCGAAAACAAAAGGGTTCCG+AGG 0.654416 tig0015812:-17929 Msa1356610:CDS
TTCGATAACGGAGTTACCGT+CGG 0.658917 tig0015812:+17892 Msa1356610:intergenic
AGGTATGATGCTCACTCAGG+TGG 0.668411 tig0015812:-15173 Msa1356610:CDS
AGGGTTCCGAGGCTGCGTCG+CGG 0.672989 tig0015812:-17918 Msa1356610:CDS
ACACCGAAATGAAACAAAGG+AGG 0.675852 tig0015812:+13002 Msa1356610:intergenic
ATACACCTCCTACTAGCCCA+AGG 0.677079 tig0015812:+12732 Msa1356610:intergenic
CAAAACACCATACCTTGTCG+AGG 0.679820 tig0015812:+12861 Msa1356610:intergenic
ATGGGTCAAGGAACACCAGG+AGG 0.699908 tig0015812:-18054 Msa1356610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTATAAAAACTTTTG+AGG + tig0015812:13427-13446 Msa1356610:intergenic 10.0%
!!! CAAAAGTTTTTATAAAATTT+TGG - tig0015812:13427-13446 Msa1356610:intron 10.0%
!! AAAAAACAAAAAAACCATAT+GGG - tig0015812:12715-12734 Msa1356610:three_prime_UTR 15.0%
!! TGTATTAAGTATCAATAAAA+TGG - tig0015812:13823-13842 Msa1356610:intron 15.0%
!!! ATTATTAAGAAAAAAGTACA+CGG + tig0015812:13901-13920 Msa1356610:intergenic 15.0%
!! AGCTTAAAGATATTAATATT+TGG - tig0015812:13987-14006 Msa1356610:intron 15.0%
!! TATATAATTTATATGATGCT+TGG - tig0015812:14203-14222 Msa1356610:intron 15.0%
!! CAATTATATGCATTAATTAA+CGG - tig0015812:15168-15187 Msa1356610:CDS 15.0%
!!! ATATCTTAATTGTACTATTT+TGG - tig0015812:16090-16109 Msa1356610:intron 15.0%
!! TAACTGAATATATGAATTTA+GGG + tig0015812:16244-16263 Msa1356610:intergenic 15.0%
!! TTAACTGAATATATGAATTT+AGG + tig0015812:16245-16264 Msa1356610:intergenic 15.0%
!! AAAAAAAAATATTAGAATGG+TGG - tig0015812:17423-17442 Msa1356610:intron 15.0%
!! GAAAAAACAAAAAAACCATA+TGG - tig0015812:12714-12733 Msa1356610:three_prime_UTR 20.0%
!! TTAAGTATCAATAAAATGGT+TGG - tig0015812:13827-13846 Msa1356610:intron 20.0%
!! TCTATGATAATTCATACAAA+TGG - tig0015812:14628-14647 Msa1356610:intron 20.0%
!! TAACTAAAACTCAATAAGAT+TGG - tig0015812:14651-14670 Msa1356610:intron 20.0%
!! TGAAAAATATTATCCAATCT+TGG - tig0015812:14700-14719 Msa1356610:intron 20.0%
!! GAAAAATATTATCCAATCTT+GGG - tig0015812:14701-14720 Msa1356610:intron 20.0%
!! AATAAAACTATAAAGAGAAG+AGG + tig0015812:14735-14754 Msa1356610:intergenic 20.0%
!! AAATTTAGATACATACATCT+AGG - tig0015812:15925-15944 Msa1356610:intron 20.0%
!!! ATAGTACAATTTAGATGTTT+TGG + tig0015812:16116-16135 Msa1356610:intergenic 20.0%
!!! ACATCTAAATTGTACTATTT+TGG - tig0015812:16118-16137 Msa1356610:intron 20.0%
!! GAATAACAAAATTATAGCAT+AGG - tig0015812:16265-16284 Msa1356610:intron 20.0%
!!! TTAAAGGTGTAAATTGAAAA+AGG + tig0015812:16325-16344 Msa1356610:intergenic 20.0%
!! GTGAAATAAACCAAAAAAAT+GGG + tig0015812:16679-16698 Msa1356610:intergenic 20.0%
!! ATAAAACAAAACAAAAGAGT+GGG + tig0015812:16996-17015 Msa1356610:intergenic 20.0%
!! AATAAAACAAAACAAAAGAG+TGG + tig0015812:16997-17016 Msa1356610:intergenic 20.0%
!! AATATAAATGTCAGAAAACA+CGG + tig0015812:17080-17099 Msa1356610:intergenic 20.0%
!! ATATAAATGTAAAAATACCC+AGG + tig0015812:17132-17151 Msa1356610:intergenic 20.0%
!! TAACAGTATAATTAACAGTA+TGG + tig0015812:17255-17274 Msa1356610:intergenic 20.0%
!! CTGTTAATTATACTGTTAAT+TGG - tig0015812:17257-17276 Msa1356610:intron 20.0%
!! TTATGTTTAAGAAGAAAGAA+GGG - tig0015812:17715-17734 Msa1356610:CDS 20.0%
!! GTTAAAGAAAACTATAATTC+AGG + tig0015812:17878-17897 Msa1356610:intergenic 20.0%
!! TTTCTTTAACTCCAAAAAAT+TGG - tig0015812:17888-17907 Msa1356610:CDS 20.0%
!!! TGGAAAATTTTCCAATTTTT+TGG + tig0015812:17902-17921 Msa1356610:intergenic 20.0%
!!! CGTTTTTTTTTGTTTTGTTT+TGG - tig0015812:18138-18157 Msa1356610:five_prime_UTR 20.0%
!! AATCAAGGACTATTTGTTAA+TGG - tig0015812:12948-12967 Msa1356610:three_prime_UTR 25.0%
!!! CTTTTTTCTCTTGATTGTTA+TGG - tig0015812:13226-13245 Msa1356610:intron 25.0%
! ATGGTGATTATTTGATTCTT+AGG - tig0015812:13245-13264 Msa1356610:intron 25.0%
! TGGTGATTATTTGATTCTTA+GGG - tig0015812:13246-13265 Msa1356610:intron 25.0%
!!! AGGGTTTTGTTTGAATATAT+TGG - tig0015812:13265-13284 Msa1356610:intron 25.0%
!!! GAATTTTTAGGTTTAGGTTT+AGG - tig0015812:13299-13318 Msa1356610:intron 25.0%
! TAAGTGAGAAAACATATAGT+TGG - tig0015812:13339-13358 Msa1356610:intron 25.0%
!!! TTTGGTTTTGGTTGTTTTTA+GGG - tig0015812:13389-13408 Msa1356610:intron 25.0%
!! CTCAAGTATAAACTATTTTG+AGG + tig0015812:13646-13665 Msa1356610:intergenic 25.0%
! TCTTAATAATACTCTTGTTC+AGG - tig0015812:13911-13930 Msa1356610:intron 25.0%
! AACATAATCAACATGTAAAG+TGG - tig0015812:13936-13955 Msa1356610:intron 25.0%
! ACATAATCAACATGTAAAGT+GGG - tig0015812:13937-13956 Msa1356610:intron 25.0%
! ATTAATATTTGGCTGTTATG+TGG - tig0015812:13998-14017 Msa1356610:intron 25.0%
! TGAACATATCTTAATTGACA+TGG - tig0015812:14103-14122 Msa1356610:intron 25.0%
!! TTCTTTAATTTCCTGTATCT+GGG + tig0015812:14349-14368 Msa1356610:intergenic 25.0%
! AGAATTTATGAGTAGTAACA+TGG + tig0015812:14949-14968 Msa1356610:intergenic 25.0%
! ATATTTCTCAAAAAGTCTTC+CGG + tig0015812:15012-15031 Msa1356610:intergenic 25.0%
!! GAGTTGATTCAAAAATACTT+AGG - tig0015812:15339-15358 Msa1356610:intron 25.0%
! ATTCAAAAATACTTAGGAGA+TGG - tig0015812:15345-15364 Msa1356610:intron 25.0%
! TCATCAATAAAGACAATAGA+GGG + tig0015812:15417-15436 Msa1356610:intergenic 25.0%
! TTCATCAATAAAGACAATAG+AGG + tig0015812:15418-15437 Msa1356610:intergenic 25.0%
! CAAAATTATAGCATAGGTTA+TGG - tig0015812:16271-16290 Msa1356610:intron 25.0%
! TCTCATTACCTCAAATTATT+TGG + tig0015812:16383-16402 Msa1356610:intergenic 25.0%
!! ATAATTTGAGGTAATGAGAT+TGG - tig0015812:16384-16403 Msa1356610:CDS 25.0%
!! TAATTTGAGGTAATGAGATT+GGG - tig0015812:16385-16404 Msa1356610:CDS 25.0%
!!! TCTCTCAAAATTTTAAGTGA+TGG + tig0015812:16435-16454 Msa1356610:intergenic 25.0%
!!! CACTTAAAATTTTGAGAGAA+AGG - tig0015812:16436-16455 Msa1356610:CDS 25.0%
! CGTGAAATAAACCAAAAAAA+TGG + tig0015812:16680-16699 Msa1356610:intergenic 25.0%
! ATATAAATGTCAGAAAACAC+GGG + tig0015812:17079-17098 Msa1356610:intergenic 25.0%
! TGCTAAATCAAGTGAATTAA+GGG + tig0015812:17333-17352 Msa1356610:intergenic 25.0%
!!! TTCTTGGTATGTTTTTAAAC+TGG - tig0015812:17455-17474 Msa1356610:intron 25.0%
!!! AGTAGTTTATCTTGTTTTTC+AGG - tig0015812:17656-17675 Msa1356610:CDS 25.0%
! GTTATGTTTAAGAAGAAAGA+AGG - tig0015812:17714-17733 Msa1356610:CDS 25.0%
! TATGTTTAAGAAGAAAGAAG+GGG - tig0015812:17716-17735 Msa1356610:CDS 25.0%
! GGTGTTAAAATGAAGAAAAA+CGG - tig0015812:18004-18023 Msa1356610:CDS 25.0%
! AAAATGAAGAAAAACGGTAA+CGG - tig0015812:18010-18029 Msa1356610:CDS 25.0%
! AAGGAATAAATAGGTATAGA+TGG + tig0015812:18039-18058 Msa1356610:intergenic 25.0%
! ATCTATACCTATTTATTCCT+TGG - tig0015812:18038-18057 Msa1356610:CDS 25.0%
! TCTATACCTATTTATTCCTT+GGG - tig0015812:18039-18058 Msa1356610:CDS 25.0%
! TGTATGCAAAAAAATTATCG+AGG - tig0015812:18073-18092 Msa1356610:exon 25.0%
TATATTATAGGACGAGGAAT+TGG + tig0015812:12651-12670 Msa0956570:intergenic 30.0%
!! TCATGCTATTGTTTCAAGTT+CGG - tig0015812:13104-13123 Msa1356610:CDS 30.0%
AAAATCCCAACATAATACTC+CGG + tig0015812:13135-13154 Msa1356610:intergenic 30.0%
! GATTTTGTCCTTTGTTGATA+AGG - tig0015812:13149-13168 Msa1356610:intron 30.0%
!! ATTTTGATGCATAACAAGGT+AGG - tig0015812:13195-13214 Msa1356610:intron 30.0%
! TTTTGATGCATAACAAGGTA+GGG - tig0015812:13196-13215 Msa1356610:intron 30.0%
! GAAGATTGCGATGAATTTTT+AGG - tig0015812:13287-13306 Msa1356610:intron 30.0%
!!! TGCGATGAATTTTTAGGTTT+AGG - tig0015812:13293-13312 Msa1356610:intron 30.0%
TGAGAAAACATATAGTTGGA+AGG - tig0015812:13343-13362 Msa1356610:intron 30.0%
! ATATAGTTGGAAGGTTGATT+GGG - tig0015812:13352-13371 Msa1356610:intron 30.0%
!!! GTTTGGTTTTGGTTGTTTTT+AGG - tig0015812:13388-13407 Msa1356610:intron 30.0%
! TATAAAATTTTGGGCCTGTT+TGG - tig0015812:13437-13456 Msa1356610:intron 30.0%
AGTATCAATAAAATGGTTGG+CGG - tig0015812:13830-13849 Msa1356610:intron 30.0%
! GACATAGATGAGAGAATTTT+GGG - tig0015812:13959-13978 Msa1356610:intron 30.0%
TTTGTGTTCTATCTTCACTT+GGG - tig0015812:14028-14047 Msa1356610:intron 30.0%
! GGGATTTTCTATTGCATTTA+TGG - tig0015812:14048-14067 Msa1356610:intron 30.0%
GGAATCATACTAAATATGAG+GGG + tig0015812:14134-14153 Msa1356610:intergenic 30.0%
CGGAATCATACTAAATATGA+GGG + tig0015812:14135-14154 Msa1356610:intergenic 30.0%
ACGGAATCATACTAAATATG+AGG + tig0015812:14136-14155 Msa1356610:intergenic 30.0%
ATGATTCCGTGACTTTATTA+TGG - tig0015812:14146-14165 Msa1356610:intron 30.0%
TTCACACCATAATAAAGTCA+CGG + tig0015812:14155-14174 Msa1356610:intergenic 30.0%
! CTTCTTTAATTTCCTGTATC+TGG + tig0015812:14350-14369 Msa1356610:intergenic 30.0%
!!! TTTTCATCCTGTTTTGAAGT+GGG + tig0015812:14686-14705 Msa1356610:intergenic 30.0%
!!! TTTTTCATCCTGTTTTGAAG+TGG + tig0015812:14687-14706 Msa1356610:intergenic 30.0%
TTATCCAATCTTGGGTTAAA+TGG - tig0015812:14709-14728 Msa1356610:intron 30.0%
!! TTGAATGTGGCATTTTGTTT+TGG - tig0015812:15514-15533 Msa1356610:intron 30.0%
!!! TGAATGTGGCATTTTGTTTT+GGG - tig0015812:15515-15534 Msa1356610:intron 30.0%
TAGAATCAAAACCATCTAAC+TGG + tig0015812:15679-15698 Msa1356610:intergenic 30.0%
!!! TTAGATGGTTTTGATTCTAG+AGG - tig0015812:15680-15699 Msa1356610:intron 30.0%
AGAAGAATTTGTCATGACTA+AGG - tig0015812:15974-15993 Msa1356610:intron 30.0%
AGTAACTTCTAACCTTCATT+CGG + tig0015812:16067-16086 Msa1356610:intergenic 30.0%
ATGTGGAAGGAAATATTTGT+TGG - tig0015812:16155-16174 Msa1356610:intron 30.0%
ATTATAGCATAGGTTATGGT+CGG - tig0015812:16275-16294 Msa1356610:intron 30.0%
AGGTGTAAATTGAAAAAGGT+TGG + tig0015812:16321-16340 Msa1356610:intergenic 30.0%
!!! TTTCCTGCGACTTTTTTTAA+AGG + tig0015812:16341-16360 Msa1356610:intergenic 30.0%
TAGAGATGCCAAATAATTTG+AGG - tig0015812:16372-16391 Msa1356610:CDS 30.0%
! CTCCTGAAAAGATCAATTTT+GGG - tig0015812:16480-16499 Msa1356610:CDS 30.0%
! TCCTGAAAAGATCAATTTTG+GGG - tig0015812:16481-16500 Msa1356610:CDS 30.0%
AACATACAGTGTTCTAACAA+GGG + tig0015812:16748-16767 Msa1356610:intergenic 30.0%
AAACATACAGTGTTCTAACA+AGG + tig0015812:16749-16768 Msa1356610:intergenic 30.0%
TTTGTGAGCAAGAGAAAAAA+GGG + tig0015812:16883-16902 Msa1356610:intergenic 30.0%
ATTTGTGAGCAAGAGAAAAA+AGG + tig0015812:16884-16903 Msa1356610:intergenic 30.0%
ACAGATCATAAGTAGATGAA+AGG + tig0015812:16971-16990 Msa1356610:intergenic 30.0%
TGTTATTGACCTGTTTGTTT+AGG - tig0015812:17223-17242 Msa1356610:intron 30.0%
GCTAAATCAAGTGAATTAAG+GGG + tig0015812:17332-17351 Msa1356610:intergenic 30.0%
CTGCTAAATCAAGTGAATTA+AGG + tig0015812:17334-17353 Msa1356610:intergenic 30.0%
TTAGCAGAGTGGAAAAAAAA+TGG - tig0015812:17347-17366 Msa1356610:intron 30.0%
!! TTGGTATGTTTTTAAACTGG+CGG - tig0015812:17458-17477 Msa1356610:intron 30.0%
GATCTTGCTTTGCATTTAAT+TGG - tig0015812:17534-17553 Msa1356610:intron 30.0%
! ATTGTCTTCTGCTAGTTTAT+TGG - tig0015812:17561-17580 Msa1356610:intron 30.0%
!!! CTTGTACCTTGTATTTTTTG+AGG - tig0015812:17599-17618 Msa1356610:CDS 30.0%
!!! TACCTTGTATTTTTTGAGGT+GGG - tig0015812:17603-17622 Msa1356610:CDS 30.0%
! AGATAAACTACTGATGATGA+GGG + tig0015812:17648-17667 Msa1356610:intergenic 30.0%
! AAGATAAACTACTGATGATG+AGG + tig0015812:17649-17668 Msa1356610:intergenic 30.0%
AAAACACCGAAATGAAACAA+AGG + tig0015812:17791-17810 Msa1356610:intergenic 30.0%
CTCTTCAGTATTGTGAATTA+TGG - tig0015812:17843-17862 Msa1356610:CDS 30.0%
! GTATCTGTGATTTTTGTTCA+CGG - tig0015812:17983-18002 Msa1356610:CDS 30.0%
AAATGAAGAAAAACGGTAAC+GGG - tig0015812:18011-18030 Msa1356610:CDS 30.0%
GAGAGAGAGGGTTATATTAT+AGG + tig0015812:12663-12682 Msa0956570:intergenic 35.0%
CAAAAAAACCATATGGGTCA+AGG - tig0015812:12721-12740 Msa1356610:three_prime_UTR 35.0%
AAAGGACAAGAAATTCGAAC+CGG - tig0015812:12804-12823 Msa1356610:three_prime_UTR 35.0%
AGCTGAAGAAGATAGATCTA+AGG - tig0015812:13020-13039 Msa1356610:three_prime_UTR 35.0%
CAACTGATCCTTATCAACAA+AGG + tig0015812:13160-13179 Msa1356610:intergenic 35.0%
! CTTTGTTGATAAGGATCAGT+TGG - tig0015812:13158-13177 Msa1356610:intron 35.0%
!!! CGCTATTTTGATGCATAACA+AGG - tig0015812:13191-13210 Msa1356610:intron 35.0%
! CATATAGTTGGAAGGTTGAT+TGG - tig0015812:13351-13370 Msa1356610:intron 35.0%
TCTAATAAGCCAAACCAAAC+AGG + tig0015812:13454-13473 Msa1356610:intergenic 35.0%
CAGCTTATGAACAATGTCAT+AGG + tig0015812:13532-13551 Msa1356610:intergenic 35.0%
TTATTTGCAGTTCATAGCAC+AGG + tig0015812:13687-13706 Msa1356610:intergenic 35.0%
GTATCAATAAAATGGTTGGC+GGG - tig0015812:13831-13850 Msa1356610:intron 35.0%
! GTACACTATGCTCTTTTTGA+GGG - tig0015812:13853-13872 Msa1356610:intron 35.0%
!! TACACTATGCTCTTTTTGAG+GGG - tig0015812:13854-13873 Msa1356610:intron 35.0%
! GGACATAGATGAGAGAATTT+TGG - tig0015812:13958-13977 Msa1356610:intron 35.0%
CTTTGTGTTCTATCTTCACT+TGG - tig0015812:14027-14046 Msa1356610:intron 35.0%
! GTGAATTTTGTGATGCAGTA+AGG - tig0015812:14170-14189 Msa1356610:intron 35.0%
! TCAAGATGAAGTTGATCCAA+TGG - tig0015812:14260-14279 Msa1356610:intron 35.0%
ATGTCAGCATATGATTCCAA+AGG + tig0015812:14312-14331 Msa1356610:intergenic 35.0%
TTGGAATCATATGCTGACAT+TGG - tig0015812:14312-14331 Msa1356610:intron 35.0%
ATACAGTTCAGGATGTGTAA+GGG + tig0015812:14385-14404 Msa1356610:intergenic 35.0%
CCAATATCTTCATACAGTTC+AGG + tig0015812:14396-14415 Msa1356610:intergenic 35.0%
CCTGAACTGTATGAAGATAT+TGG - tig0015812:14393-14412 Msa1356610:intron 35.0%
TATAAAATGACTCCCTTTGG+AGG + tig0015812:14426-14445 Msa1356610:intergenic 35.0%
CCATATAAAATGACTCCCTT+TGG + tig0015812:14429-14448 Msa1356610:intergenic 35.0%
!! CCAAAGGGAGTCATTTTATA+TGG - tig0015812:14426-14445 Msa1356610:intron 35.0%
!! GTCATTTTATATGGAGAACC+TGG - tig0015812:14435-14454 Msa1356610:intron 35.0%
! AGCATTTTTGTGTGTTTGAC+AGG - tig0015812:14486-14505 Msa1356610:intron 35.0%
! GCATTTTTGTGTGTTTGACA+GGG - tig0015812:14487-14506 Msa1356610:intron 35.0%
! TTTTGAACCCACTTCAAAAC+AGG - tig0015812:14676-14695 Msa1356610:intron 35.0%
! TTCTCTAAGAGAGATTTGTG+TGG - tig0015812:14867-14886 Msa1356610:intron 35.0%
! AGAGAGATTTGTGTGGTTTT+TGG - tig0015812:14874-14893 Msa1356610:intron 35.0%
AAGTGCAAGTAACCAAACAA+AGG - tig0015812:15080-15099 Msa1356610:CDS 35.0%
AGTGCAAGTAACCAAACAAA+GGG - tig0015812:15081-15100 Msa1356610:CDS 35.0%
TCTGCTTCTTAAGTACTCAT+TGG - tig0015812:15109-15128 Msa1356610:CDS 35.0%
GCATGTGATCTTTACTTGTA+TGG - tig0015812:15141-15160 Msa1356610:CDS 35.0%
! AAAAGTTCCCTCACAAGTTT+TGG + tig0015812:15372-15391 Msa1356610:intergenic 35.0%
ATTGATGAAATTGACGCTGT+TGG - tig0015812:15429-15448 Msa1356610:CDS 35.0%
CGTTATTGAGTATCAGCTTT+AGG - tig0015812:15464-15483 Msa1356610:CDS 35.0%
AATGTGTCCTTTCTTGAATG+TGG - tig0015812:15501-15520 Msa1356610:intron 35.0%
CAAAATGCCACATTCAAGAA+AGG + tig0015812:15511-15530 Msa1356610:intergenic 35.0%
TGAAATTCAAAGGACCATGT+TGG - tig0015812:15643-15662 Msa1356610:intron 35.0%
ATCAAGGCTTTCAATTCTGT+TGG + tig0015812:15729-15748 Msa1356610:intergenic 35.0%
!!! GTCTCCTAGTTTTGATATCA+GGG + tig0015812:15802-15821 Msa1356610:intergenic 35.0%
! ACACCTTTAAAAAAAGTCGC+AGG - tig0015812:16335-16354 Msa1356610:CDS 35.0%
TTGGGTAAGAATCTCCTTAA+AGG - tig0015812:16403-16422 Msa1356610:CDS 35.0%
AGTGATGGTTTAAGCCTTTA+AGG + tig0015812:16420-16439 Msa1356610:intergenic 35.0%
! GCTCCTGAAAAGATCAATTT+TGG - tig0015812:16479-16498 Msa1356610:CDS 35.0%
TGAACTACGATATGTAGTCT+GGG + tig0015812:16535-16554 Msa1356610:intergenic 35.0%
!!! GCTAATCTCACCCATTTTTT+TGG - tig0015812:16666-16685 Msa1356610:intron 35.0%
ATCGAAACAGAGAAGGATAT+AGG + tig0015812:16782-16801 Msa1356610:intergenic 35.0%
TTTCTCTTGCTCACAAATTC+TGG - tig0015812:16886-16905 Msa1356610:intron 35.0%
GTGCTTGCATGTAAACTAAA+AGG + tig0015812:16927-16946 Msa1356610:intergenic 35.0%
TTAAAGCTCACGCATATGTA+GGG + tig0015812:17044-17063 Msa1356610:intergenic 35.0%
ATTAAAGCTCACGCATATGT+AGG + tig0015812:17045-17064 Msa1356610:intergenic 35.0%
AAAAATACCCAGGACATGAA+TGG + tig0015812:17122-17141 Msa1356610:intergenic 35.0%
ATTCACTTGATTTAGCAGAG+TGG - tig0015812:17336-17355 Msa1356610:intron 35.0%
!! ATGGTGGTGAAAGTTTTTCT+TGG - tig0015812:17439-17458 Msa1356610:intron 35.0%
AGATCTCGAATATGACTACT+AGG + tig0015812:17519-17538 Msa1356610:intergenic 35.0%
!!! GTACCTTGTATTTTTTGAGG+TGG - tig0015812:17602-17621 Msa1356610:CDS 35.0%
AACCCACCTCAAAAAATACA+AGG + tig0015812:17608-17627 Msa1356610:intergenic 35.0%
!!! TTGTATTTTTTGAGGTGGGT+TGG - tig0015812:17607-17626 Msa1356610:CDS 35.0%
! GATAAACTACTGATGATGAG+GGG + tig0015812:17647-17666 Msa1356610:intergenic 35.0%
TGCCTTCTTAAAATCAGCAT+GGG + tig0015812:17685-17704 Msa1356610:intergenic 35.0%
TTGCCTTCTTAAAATCAGCA+TGG + tig0015812:17686-17705 Msa1356610:intergenic 35.0%
CTTCACATATACAATCCTTC+AGG + tig0015812:17744-17763 Msa1356610:intergenic 35.0%
! ATTTTCCATAATCCTCGACA+AGG - tig0015812:17914-17933 Msa1356610:CDS 35.0%
TACTAGCCCAAGGAATAAAT+AGG + tig0015812:18048-18067 Msa1356610:intergenic 35.0%
!! TATTTATTCCTTGGGCTAGT+AGG - tig0015812:18047-18066 Msa1356610:CDS 35.0%
GAGGGTTATATTATAGGACG+AGG + tig0015812:12657-12676 Msa0956570:intergenic 40.0%
TCGCAAACAGCGAAAACAAA+AGG - tig0015812:12849-12868 Msa1356610:three_prime_UTR 40.0%
CGCAAACAGCGAAAACAAAA+GGG - tig0015812:12850-12869 Msa1356610:three_prime_UTR 40.0%
CGAAGTTTGCACTTCGATAA+CGG + tig0015812:12910-12929 Msa1356610:intergenic 40.0%
CGTTATCGAAGTGCAAACTT+CGG - tig0015812:12908-12927 Msa1356610:three_prime_UTR 40.0%
CAAACTTCGGTTACTGAAAC+TGG - tig0015812:12921-12940 Msa1356610:three_prime_UTR 40.0%
ACTGAAACTGGAACGAATCA+AGG - tig0015812:12933-12952 Msa1356610:three_prime_UTR 40.0%
AGAAGAGTTTGTAGCGAATC+AGG - tig0015812:12972-12991 Msa1356610:three_prime_UTR 40.0%
AGTTTGTAGCGAATCAGGAA+AGG - tig0015812:12977-12996 Msa1356610:three_prime_UTR 40.0%
!! TCTAAGGTTGATGATCTTCG+TGG - tig0015812:13036-13055 Msa1356610:exon 40.0%
TCAAGATTGCCAACACTCAT+AGG + tig0015812:13066-13085 Msa1356610:intergenic 40.0%
!! GCTATTGTTTCAAGTTCGGT+TGG - tig0015812:13108-13127 Msa1356610:CDS 40.0%
! TTGGACCGGAGTATTATGTT+GGG - tig0015812:13127-13146 Msa1356610:intron 40.0%
!! ACCTCGTGTATGTTTGGTTT+TGG - tig0015812:13377-13396 Msa1356610:intron 40.0%
ACCAAAACCAAACATACACG+AGG + tig0015812:13381-13400 Msa1356610:intergenic 40.0%
! AATTTTGGGCCTGTTTGGTT+TGG - tig0015812:13442-13461 Msa1356610:intron 40.0%
! TGACATGTGTTTTGTGAGTC+TGG - tig0015812:13484-13503 Msa1356610:intron 40.0%
CAAGAGTCATGACATTCACT+AGG - tig0015812:13736-13755 Msa1356610:intron 40.0%
! GGTACACTATGCTCTTTTTG+AGG - tig0015812:13852-13871 Msa1356610:intron 40.0%
TACCAGGTTCTTTCTGTTGT+TGG - tig0015812:14231-14250 Msa1356610:intron 40.0%
TCCAATGGTCTCTGTAATGA+AGG - tig0015812:14275-14294 Msa1356610:intron 40.0%
ACCTTCATTACAGAGACCAT+TGG + tig0015812:14279-14298 Msa1356610:intergenic 40.0%
CTCTGTAATGAAGGTTGAGA+AGG - tig0015812:14284-14303 Msa1356610:intron 40.0%
GAATCATATGCTGACATTGG+TGG - tig0015812:14315-14334 Msa1356610:intron 40.0%
TACAGTTCAGGATGTGTAAG+GGG + tig0015812:14384-14403 Msa1356610:intergenic 40.0%
CATACAGTTCAGGATGTGTA+AGG + tig0015812:14386-14405 Msa1356610:intergenic 40.0%
TATTGGTATCAAGCCTCCAA+AGG - tig0015812:14410-14429 Msa1356610:intron 40.0%
ATTGGTATCAAGCCTCCAAA+GGG - tig0015812:14411-14430 Msa1356610:intron 40.0%
TTATATGGAGAACCTGGAAC+CGG - tig0015812:14441-14460 Msa1356610:intron 40.0%
!! CTTTGCAAGAAGTGTCTTTC+CGG + tig0015812:14463-14482 Msa1356610:intergenic 40.0%
TCAAAAAGTCTTCCGGTATG+GGG + tig0015812:15005-15024 Msa1356610:intergenic 40.0%
CTCAAAAAGTCTTCCGGTAT+GGG + tig0015812:15006-15025 Msa1356610:intergenic 40.0%
TCTCAAAAAGTCTTCCGGTA+TGG + tig0015812:15007-15026 Msa1356610:intergenic 40.0%
AGCAGAAACAACCCTTTGTT+TGG + tig0015812:15095-15114 Msa1356610:intergenic 40.0%
! AGAGTGCTTTCTTTGCTTTC+AGG - tig0015812:15269-15288 Msa1356610:intron 40.0%
GAATGTTGCTGATGTTGAGT+TGG + tig0015812:15301-15320 Msa1356610:intergenic 40.0%
AGATGGTCCAAAACTTGTGA+GGG - tig0015812:15362-15381 Msa1356610:CDS 40.0%
! ACTTTTCTGATATGCCATGC+AGG - tig0015812:15594-15613 Msa1356610:intron 40.0%
! ATTTTCCTGTCTATTCGACC+TGG + tig0015812:15767-15786 Msa1356610:intergenic 40.0%
!!! CTAGTTTTGATATCAGGGAG+AGG + tig0015812:15797-15816 Msa1356610:intergenic 40.0%
CTCTCCCTGATATCAAAACT+AGG - tig0015812:15795-15814 Msa1356610:intron 40.0%
!!! CGTCTCCTAGTTTTGATATC+AGG + tig0015812:15803-15822 Msa1356610:intergenic 40.0%
! AACTAGGAGACGCATTTTCA+CGG - tig0015812:15811-15830 Msa1356610:intron 40.0%
ATGACTAAGGATGAGTTCTC+TGG - tig0015812:15987-16006 Msa1356610:intron 40.0%
AAAGCAATATGTACCGAAGC+TGG - tig0015812:16020-16039 Msa1356610:intron 40.0%
TAAAGCAAGTAAGCCAGCTT+CGG + tig0015812:16036-16055 Msa1356610:intergenic 40.0%
! CTTCCACATGATCAGCTTTT+TGG + tig0015812:16144-16163 Msa1356610:intergenic 40.0%
CAAAAAGCTGATCATGTGGA+AGG - tig0015812:16142-16161 Msa1356610:intron 40.0%
AAGTCGCAGGAAAAATGAAG+TGG - tig0015812:16348-16367 Msa1356610:CDS 40.0%
AGTCGCAGGAAAAATGAAGT+GGG - tig0015812:16349-16368 Msa1356610:CDS 40.0%
! GCCCCAAAATTGATCTTTTC+AGG + tig0015812:16485-16504 Msa1356610:intergenic 40.0%
TGGGTTCTTTCGAATGAAGA+AGG + tig0015812:16516-16535 Msa1356610:intergenic 40.0%
CTGAACTACGATATGTAGTC+TGG + tig0015812:16536-16555 Msa1356610:intergenic 40.0%
ATCTGCAAAGCCAAAACACT+CGG + tig0015812:16637-16656 Msa1356610:intergenic 40.0%
AAAGCCAGAAAATTCAGGCT+AGG + tig0015812:16851-16870 Msa1356610:intergenic 40.0%
CAAGAGAAAAAAGGGTTGCT+GGG + tig0015812:16875-16894 Msa1356610:intergenic 40.0%
! ATGCGTGAGCTTTAATGCAT+TGG - tig0015812:17049-17068 Msa1356610:intron 40.0%
! TGCGTGAGCTTTAATGCATT+GGG - tig0015812:17050-17069 Msa1356610:intron 40.0%
TGGAGCTTACCTAAACAAAC+AGG + tig0015812:17235-17254 Msa1356610:intergenic 40.0%
!!! TGGTGTGTTTTTTAACCGCA+AGG - tig0015812:17493-17512 Msa1356610:intron 40.0%
AATATGACTACTAGGCCTTG+CGG + tig0015812:17511-17530 Msa1356610:intergenic 40.0%
!!! GACCCATGCTGATTTTAAGA+AGG - tig0015812:17680-17699 Msa1356610:CDS 40.0%
AAATGAAACAAAGGAGGCAG+GGG + tig0015812:17782-17801 Msa1356610:intergenic 40.0%
GAAATGAAACAAAGGAGGCA+GGG + tig0015812:17783-17802 Msa1356610:intergenic 40.0%
! CTGCCTCCTTTGTTTCATTT+CGG - tig0015812:17782-17801 Msa1356610:CDS 40.0%
ACACCGAAATGAAACAAAGG+AGG + tig0015812:17788-17807 Msa1356610:intergenic 40.0%
!! CAAGGTATGGTGTTTTGTTG+CGG - tig0015812:17932-17951 Msa1356610:CDS 40.0%
GAAGAGTGAAGTGAGAGAGA+GGG + tig0015812:12675-12694 Msa0956570:intergenic 45.0%
AGAAGAGTGAAGTGAGAGAG+AGG + tig0015812:12676-12695 Msa0956570:intergenic 45.0%
!! TTCGATAACGGAGTTACCGT+CGG + tig0015812:12898-12917 Msa1356610:intergenic 45.0%
!! TGTTTCAAGTTCGGTTGGAC+CGG - tig0015812:13113-13132 Msa1356610:intron 45.0%
! GTTGGACCGGAGTATTATGT+TGG - tig0015812:13126-13145 Msa1356610:intron 45.0%
GATAAGGATCAGTTGGAACC+TGG - tig0015812:13165-13184 Msa1356610:intron 45.0%
TGCATCAAAATAGCGCAACC+AGG + tig0015812:13186-13205 Msa1356610:intergenic 45.0%
TGGGAAACCTCGTGTATGTT+TGG - tig0015812:13371-13390 Msa1356610:intron 45.0%
! ATGATGCTTGGCTCTTTACC+AGG - tig0015812:14215-14234 Msa1356610:intron 45.0%
GTCCAACAACAGAAAGAACC+TGG + tig0015812:14236-14255 Msa1356610:intergenic 45.0%
TGGTTTAGATGCCCAGATAC+AGG - tig0015812:14335-14354 Msa1356610:intron 45.0%
CGGAAAGACACTTCTTGCAA+AGG - tig0015812:14461-14480 Msa1356610:intron 45.0%
TGTGTGTTTGACAGGGCTAT+TGG - tig0015812:14494-14513 Msa1356610:intron 45.0%
GAGGCCATTTAACCCAAGAT+TGG + tig0015812:14716-14735 Msa1356610:intergenic 45.0%
! GAAGACACTGACTAGGTAGT+AGG + tig0015812:14983-15002 Msa1356610:intergenic 45.0%
CTTTCTTTGCTTTCAGGCTG+TGG - tig0015812:15275-15294 Msa1356610:intron 45.0%
GCAACATTCTTGCGTGTTGT+TGG - tig0015812:15312-15331 Msa1356610:intron 45.0%
GAGATGGTCCAAAACTTGTG+AGG - tig0015812:15361-15380 Msa1356610:CDS 45.0%
TTGACGCTGTTGGTACAAAG+AGG - tig0015812:15439-15458 Msa1356610:CDS 45.0%
!!! TGGCATTTTGTTTTGGGCGT+AGG - tig0015812:15521-15540 Msa1356610:intron 45.0%
!!! GGCATTTTGTTTTGGGCGTA+GGG - tig0015812:15522-15541 Msa1356610:intron 45.0%
!!! GCATTTTGTTTTGGGCGTAG+GGG - tig0015812:15523-15542 Msa1356610:intron 45.0%
! GTGGAGAGCGTGAAATTCAA+AGG - tig0015812:15633-15652 Msa1356610:intron 45.0%
GAGTTGCTGAACCAGTTAGA+TGG - tig0015812:15665-15684 Msa1356610:intron 45.0%
TAAGACCAGGTCGAATAGAC+AGG - tig0015812:15759-15778 Msa1356610:intron 45.0%
TTTACGAGAACGCCGAATGA+AGG - tig0015812:16052-16071 Msa1356610:intron 45.0%
TGGCCAAAAAGCTGATCATG+TGG - tig0015812:16138-16157 Msa1356610:intron 45.0%
AAGCCAAAACACTCGGCAAA+GGG + tig0015812:16630-16649 Msa1356610:intergenic 45.0%
AAAGCCAAAACACTCGGCAA+AGG + tig0015812:16631-16650 Msa1356610:intergenic 45.0%
GGATTGCATCGAAACAGAGA+AGG + tig0015812:16789-16808 Msa1356610:intergenic 45.0%
GTTTCGATGCAATCCCTTCT+AGG - tig0015812:16794-16813 Msa1356610:intron 45.0%
GCAGTGTGTTGTACCTAGAA+GGG + tig0015812:16810-16829 Msa1356610:intergenic 45.0%
AGCAGTGTGTTGTACCTAGA+AGG + tig0015812:16811-16830 Msa1356610:intergenic 45.0%
TGGGCAAAGCCAGAAAATTC+AGG + tig0015812:16856-16875 Msa1356610:intergenic 45.0%
GCAAGAGAAAAAAGGGTTGC+TGG + tig0015812:16876-16895 Msa1356610:intergenic 45.0%
! GTGTTCCGTGTTTTCTGACA+CGG - tig0015812:17017-17036 Msa1356610:intron 45.0%
! GCGTGAGCTTTAATGCATTG+GGG - tig0015812:17051-17070 Msa1356610:intron 45.0%
ATCGTTGACCATTCATGTCC+TGG - tig0015812:17111-17130 Msa1356610:intron 45.0%
TCGTTGACCATTCATGTCCT+GGG - tig0015812:17112-17131 Msa1356610:intron 45.0%
CGAAATGAAACAAAGGAGGC+AGG + tig0015812:17784-17803 Msa1356610:intergenic 45.0%
CCATACCTTGTCGAGGATTA+TGG + tig0015812:17922-17941 Msa1356610:intergenic 45.0%
CCATAATCCTCGACAAGGTA+TGG - tig0015812:17919-17938 Msa1356610:CDS 45.0%
CAAAACACCATACCTTGTCG+AGG + tig0015812:17929-17948 Msa1356610:intergenic 45.0%
!! TTATTCCTTGGGCTAGTAGG+AGG - tig0015812:18050-18069 Msa1356610:CDS 45.0%
!!! AAAAGTTTTTATAAAATTTT+GGG - tig0015812:13428-13447 Msa1356610:intron 5.0%
!! AAAAAAAAAAAAAAAATCAA+TGG + tig0015812:17202-17221 Msa1356610:intergenic 5.0%
!! AAAAAAAAAAAATATTAGAA+TGG - tig0015812:17420-17439 Msa1356610:intron 5.0%
CTGGTGTTCCTTGACCCATA+TGG + tig0015812:12732-12751 Msa1356610:intergenic 50.0%
CATATGGGTCAAGGAACACC+AGG - tig0015812:12730-12749 Msa1356610:three_prime_UTR 50.0%
ACCAGACGGCAACGACAAAA+AGG - tig0015812:12786-12805 Msa1356610:three_prime_UTR 50.0%
! TCCTTTTTGTCGTTGCCGTC+TGG + tig0015812:12790-12809 Msa1356610:intergenic 50.0%
GCGAAAACAAAAGGGTTCCG+AGG - tig0015812:12858-12877 Msa1356610:three_prime_UTR 50.0%
TCAGGAAAGGTTGAAGCCTC+AGG - tig0015812:12990-13009 Msa1356610:three_prime_UTR 50.0%
TCTTCAGCTTTCTCCTCCTG+AGG + tig0015812:13009-13028 Msa1356610:intergenic 50.0%
GAAGGTTGAGAAGGCTCCTT+TGG - tig0015812:14293-14312 Msa1356610:intron 50.0%
!! AGAAGTGTCTTTCCGGTTCC+AGG + tig0015812:14456-14475 Msa1356610:intergenic 50.0%
! GTATGGGGAAGACACTGACT+AGG + tig0015812:14990-15009 Msa1356610:intergenic 50.0%
AGTCAGTGTCTTCCCCATAC+CGG - tig0015812:14990-15009 Msa1356610:CDS 50.0%
GAGTGAGCATCATACCTGCA+TGG + tig0015812:15611-15630 Msa1356610:intergenic 50.0%
TGCAGGTATGATGCTCACTC+AGG - tig0015812:15611-15630 Msa1356610:intron 50.0%
AGGTATGATGCTCACTCAGG+TGG - tig0015812:15614-15633 Msa1356610:intron 50.0%
CTGGTTCAGCAACTCCAACA+TGG + tig0015812:15660-15679 Msa1356610:intergenic 50.0%
GTCTTAGCAGAGCTGGATCA+AGG + tig0015812:15745-15764 Msa1356610:intergenic 50.0%
! AGGAGACGCATTTTCACGGT+AGG - tig0015812:15815-15834 Msa1356610:intron 50.0%
CGTAGTTCAGCTCTTCTCGT+TGG - tig0015812:16546-16565 Msa1356610:CDS 50.0%
TTATGAGGCAGCTGCAGGAT+GGG + tig0015812:16605-16624 Msa1356610:intergenic 50.0%
ACTCGGCAAAGGGAGTTATG+AGG + tig0015812:16620-16639 Msa1356610:intergenic 50.0%
! ACTCCCTTTGCCGAGTGTTT+TGG - tig0015812:16624-16643 Msa1356610:intron 50.0%
AGGTACAACACACTGCTTGC+AGG - tig0015812:16814-16833 Msa1356610:intron 50.0%
! ACTGCTTGCAGGCATTGTTC+TGG - tig0015812:16825-16844 Msa1356610:intron 50.0%
! CTGGCCTAGCCTGAATTTTC+TGG - tig0015812:16844-16863 Msa1356610:intron 50.0%
AGGGTCCGTGTCAGAAAACA+CGG + tig0015812:17025-17044 Msa1356610:intergenic 50.0%
!! AAGAAAGAAGGGGTGCCTGA+AGG - tig0015812:17726-17745 Msa1356610:CDS 50.0%
AAAGGAGGCAGGGGTAAATG+AGG + tig0015812:17773-17792 Msa1356610:intergenic 50.0%
ATACACCTCCTACTAGCCCA+AGG + tig0015812:18058-18077 Msa1356610:intergenic 50.0%
ATGGGTCAAGGAACACCAGG+AGG - tig0015812:12733-12752 Msa1356610:three_prime_UTR 55.0%
! TGTCGTTGCCGTCTGGTTTC+CGG + tig0015812:12783-12802 Msa1356610:intergenic 55.0%
GGAAAGGTTGAAGCCTCAGG+AGG - tig0015812:12993-13012 Msa1356610:three_prime_UTR 55.0%
CGTGGTTCGCCTATGAGTGT+TGG - tig0015812:13054-13073 Msa1356610:CDS 55.0%
!! TTTTGGGCGTAGGGGTGTGT+GGG - tig0015812:15531-15550 Msa1356610:intron 55.0%
GATCCAGCTCTGCTAAGACC+AGG - tig0015812:15746-15765 Msa1356610:intron 55.0%
GTTATGAGGCAGCTGCAGGA+TGG + tig0015812:16606-16625 Msa1356610:intergenic 55.0%
ACTGGCGGTGACTGTTTCAC+TGG - tig0015812:17473-17492 Msa1356610:intron 55.0%
GGTCAAGGAACACCAGGAGG+CGG - tig0015812:12736-12755 Msa1356610:three_prime_UTR 60.0%
CACCAGGAGGCGGTTTGAAC+CGG - tig0015812:12746-12765 Msa1356610:three_prime_UTR 60.0%
AGGCGGTTTGAACCGGCAAC+CGG - tig0015812:12753-12772 Msa1356610:three_prime_UTR 60.0%
!! GTTTTGGGCGTAGGGGTGTG+TGG - tig0015812:15530-15549 Msa1356610:intron 60.0%
! GTAGGGGTGTGTGGGAACAG+TGG - tig0015812:15539-15558 Msa1356610:intron 60.0%
!! CGACCTGGTCTTAGCAGAGC+TGG + tig0015812:15752-15771 Msa1356610:intergenic 60.0%
GGGAGTTATGAGGCAGCTGC+AGG + tig0015812:16610-16629 Msa1356610:intergenic 60.0%
!! TGCCGGTTCAAACCGCCTCC+TGG + tig0015812:12751-12770 Msa1356610:intergenic 65.0%
GGCGGTTTGAACCGGCAACC+GGG - tig0015812:12754-12773 Msa1356610:three_prime_UTR 65.0%
TGAACCGGCAACCGGGTGAC+CGG - tig0015812:12761-12780 Msa1356610:three_prime_UTR 65.0%
GTTTCCGGTCACCCGGTTGC+CGG + tig0015812:12768-12787 Msa1356610:intergenic 65.0%
! CCGTCTGGTTTCCGGTCACC+CGG + tig0015812:12775-12794 Msa1356610:intergenic 65.0%
CCGGGTGACCGGAAACCAGA+CGG - tig0015812:12772-12791 Msa1356610:three_prime_UTR 65.0%
ATTCGAACCGGCCGCACCAC+CGG - tig0015812:12816-12835 Msa1356610:three_prime_UTR 65.0%
TGTTTGCGACCGACGCGAGC+CGG + tig0015812:12838-12857 Msa1356610:intergenic 65.0%
GGGGTGTGTGGGAACAGTGG+AGG - tig0015812:15542-15561 Msa1356610:intron 65.0%
GGCAGCTGCAGGATGGGTCA+CGG + tig0015812:16599-16618 Msa1356610:intergenic 65.0%
AGGGTTCCGAGGCTGCGTCG+CGG - tig0015812:12869-12888 Msa1356610:three_prime_UTR 70.0%
ACCGACGCGAGCCGGTGGTG+CGG + tig0015812:12830-12849 Msa1356610:intergenic 75.0%
TTGCGACCGACGCGAGCCGG+TGG + tig0015812:12835-12854 Msa1356610:intergenic 75.0%
CGGCAACCGCGACGCAGCCT+CGG + tig0015812:12878-12897 Msa1356610:intergenic 75.0%
GGCTGCGTCGCGGTTGCCGA+CGG - tig0015812:12879-12898 Msa1356610:three_prime_UTR 75.0%
! ACGCGAGCCGGTGGTGCGGC+CGG + tig0015812:12826-12845 Msa1356610:intergenic 80.0%
!!! GCCGCACCACCGGCTCGCGT+CGG - tig0015812:12826-12845 Msa1356610:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
tig0015812 gene 12644 18165 12644 ID=Msa1356610;Name=Msa1356610
tig0015812 mRNA 12644 18165 12644 ID=Msa1356610-mRNA-1;Parent=Msa1356610;Name=Msa1356610-mRNA-1;_AED=0.07;_eAED=0.07;_QI=89|1|1|1|1|1|6|404|445
tig0015812 exon 12644 13131 12644 ID=Msa1356610-mRNA-1:exon:10054;Parent=Msa1356610-mRNA-1
tig0015812 exon 14736 14876 14736 ID=Msa1356610-mRNA-1:exon:10053;Parent=Msa1356610-mRNA-1
tig0015812 exon 14977 15193 14977 ID=Msa1356610-mRNA-1:exon:10052;Parent=Msa1356610-mRNA-1
tig0015812 exon 15349 15518 15349 ID=Msa1356610-mRNA-1:exon:10051;Parent=Msa1356610-mRNA-1
tig0015812 exon 16327 16572 16327 ID=Msa1356610-mRNA-1:exon:10050;Parent=Msa1356610-mRNA-1
tig0015812 exon 17597 18165 17597 ID=Msa1356610-mRNA-1:exon:10049;Parent=Msa1356610-mRNA-1
tig0015812 five_prime_UTR 18077 18165 18077 ID=Msa1356610-mRNA-1:five_prime_utr;Parent=Msa1356610-mRNA-1
tig0015812 CDS 17597 18076 17597 ID=Msa1356610-mRNA-1:cds;Parent=Msa1356610-mRNA-1
tig0015812 CDS 16327 16572 16327 ID=Msa1356610-mRNA-1:cds;Parent=Msa1356610-mRNA-1
tig0015812 CDS 15349 15518 15349 ID=Msa1356610-mRNA-1:cds;Parent=Msa1356610-mRNA-1
tig0015812 CDS 14977 15193 14977 ID=Msa1356610-mRNA-1:cds;Parent=Msa1356610-mRNA-1
tig0015812 CDS 14736 14876 14736 ID=Msa1356610-mRNA-1:cds;Parent=Msa1356610-mRNA-1
tig0015812 CDS 13048 13131 13048 ID=Msa1356610-mRNA-1:cds;Parent=Msa1356610-mRNA-1
tig0015812 three_prime_UTR 12644 13047 12644 ID=Msa1356610-mRNA-1:three_prime_utr;Parent=Msa1356610-mRNA-1
Gene Sequence

>Msa1356610

ATGGGTCAAGGAACACCAGGAGGCGGTTTGAACCGGCAACCGGGTGACCGGAAACCAGACGGCAACGACAAAAAGGACAAGAAATTCGAACCGGCCGCACCACCGGCTCGCGTCGGTCGCAAACAGCGAAAACAAAAGGGTTCCGAGGCTGCGTCGCGGTTGCCGACGGTAACTCCGTTATCGAAGTGCAAACTTCGGTTACTGAAACTGGAACGAATCAAGGACTATTTGTTAATGGAAGAAGAGTTTGTAGCGAATCAGGAAAGGTTGAAGCCTCAGGAGGAGAAAGCTGAAGAAGATAGATCTAAGGTTGATGATCTTCGTGGTTCGCCTATGAGTGTTGGCAATCTTGAAGAGCTTATTGATGAGAATCATGCTATTGTTTCAAGTTCGGTTGGACCGGAGTATTATGTTGGGATTTTGTCCTTTGTTGATAAGGATCAGTTGGAACCTGGTTGCGCTATTTTGATGCATAACAAGGTTCTTTCTGTTGTTGGACTTCTTCAAGATGAAGTTGATCCAATGGTCTCTGTAATGAAGGTTGAGAAGGCTCCTTTGGAATCATATGCTGACATTGGTGGTTTAGATGCCCAGATACAGGAAATTAAAGAAGCTGTAGAGCTTCCCCTTACACATCCTGAACTGTATGAAGATATTGGTATCAAGCCTCCAAAGGGAGTCATTTTATATGGAGAACCTGGAACCGGAAAGACACTTCTTGCAAAGGCTGTGGCCAACTCAACATCAGCAACATTCTTGCGTGTTGTTGGTAGTGAGTTGATTCAAAAATACTTAGGAGATGGTCCAAAACTTGTGAGGGAACTTTTTCGAGTTGCTGATGATCTTTCTCCCTCTATTGTCTTTATTGATGAAATTGACGCTGTTGGTACAAAGAGGTATGATGCTCACTCAGGTGGAGAGCGTGAAATTCAAAGGACCATGTTGGAGTTGCTGAACCAGTTAGATGGTTTTGATTCTAGAGGAGATGTTAAAGTTATTCTCGCAACCAACAGAATTGAAAGCCTTGATCCAGCTCTGCTAAGACCAGGTCGAATAGACAGGAAAATTGAATTTCCTCTCCCTGATATCAAAACTAGGAGACGCATTTTCACGATACATACATCTAGGATGACATTAGCTGACGATGTCAATTTAGAAGAATTTGTCATGACTAAGGATGAGTTCTCTGGAGCTGATATAAAAGCAATATGTACCGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAGGTGACCCATGCTGATTTTAAGAAGGCAAAAGATAAAGTTATGTTTAAGAAGAAAGAAGGGGTGCCTGAAGGATTGTATATGTGA

Protein sequence

>Msa1356610

MGQGTPGGGLNRQPGDRKPDGNDKKDKKFEPAAPPARVGRKQRKQKGSEAASRLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFTIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKDKVMFKKKEGVPEGLYM*